Multiple sequence alignment - TraesCS7D01G366400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G366400 chr7D 100.000 4059 0 0 1 4059 474085779 474081721 0.000000e+00 7496.0
1 TraesCS7D01G366400 chr7D 88.040 602 32 7 1182 1768 591722557 591721981 0.000000e+00 676.0
2 TraesCS7D01G366400 chr7D 77.273 176 37 3 221 393 637045682 637045857 2.580000e-17 100.0
3 TraesCS7D01G366400 chr7B 89.045 2282 160 36 1 2256 498182017 498179800 0.000000e+00 2747.0
4 TraesCS7D01G366400 chr7B 94.100 983 46 7 2290 3267 498179800 498178825 0.000000e+00 1483.0
5 TraesCS7D01G366400 chr7B 90.856 689 40 11 1534 2221 609919943 609919277 0.000000e+00 902.0
6 TraesCS7D01G366400 chr7B 91.599 619 40 5 1534 2151 584786893 584786286 0.000000e+00 845.0
7 TraesCS7D01G366400 chr7B 93.438 381 20 2 1842 2221 699661197 699661573 9.850000e-156 560.0
8 TraesCS7D01G366400 chr7B 98.024 253 4 1 3807 4059 498150942 498150691 4.820000e-119 438.0
9 TraesCS7D01G366400 chr7B 89.892 277 20 5 2290 2565 556663642 556663373 2.320000e-92 350.0
10 TraesCS7D01G366400 chr7B 89.892 277 20 5 2290 2565 699661597 699661866 2.320000e-92 350.0
11 TraesCS7D01G366400 chr7B 79.948 384 36 25 3266 3646 498178743 498178398 1.130000e-60 244.0
12 TraesCS7D01G366400 chr7A 85.896 1021 110 14 842 1840 521949803 521950811 0.000000e+00 1057.0
13 TraesCS7D01G366400 chr7A 81.132 424 61 14 2524 2942 521951570 521951979 5.060000e-84 322.0
14 TraesCS7D01G366400 chr7A 86.454 251 18 6 2973 3222 521951981 521952216 1.120000e-65 261.0
15 TraesCS7D01G366400 chr7A 93.023 86 6 0 3969 4054 521953084 521953169 4.260000e-25 126.0
16 TraesCS7D01G366400 chr6B 92.174 690 41 7 1534 2221 225192833 225192155 0.000000e+00 963.0
17 TraesCS7D01G366400 chr6B 88.099 605 47 8 1179 1768 421315475 421316069 0.000000e+00 695.0
18 TraesCS7D01G366400 chr6B 89.170 277 22 5 2290 2565 301775100 301774831 5.030000e-89 339.0
19 TraesCS7D01G366400 chr2B 91.014 690 49 6 1534 2221 799902897 799902219 0.000000e+00 918.0
20 TraesCS7D01G366400 chr2B 92.913 381 22 2 1842 2221 756095672 756095296 2.130000e-152 549.0
21 TraesCS7D01G366400 chr2B 89.170 277 22 5 2290 2565 75167967 75168236 5.030000e-89 339.0
22 TraesCS7D01G366400 chr2B 95.000 60 2 1 1104 1162 137137525 137137584 4.320000e-15 93.5
23 TraesCS7D01G366400 chr3A 89.535 602 46 7 1182 1768 547998607 547999206 0.000000e+00 747.0
24 TraesCS7D01G366400 chr3A 89.130 92 8 2 1068 1158 514491822 514491912 3.320000e-21 113.0
25 TraesCS7D01G366400 chr4A 89.167 600 47 7 1184 1768 557023222 557023818 0.000000e+00 732.0
26 TraesCS7D01G366400 chr4A 88.870 602 50 7 1182 1768 435284546 435283947 0.000000e+00 725.0
27 TraesCS7D01G366400 chr5A 89.037 602 49 7 1182 1768 490521430 490520831 0.000000e+00 730.0
28 TraesCS7D01G366400 chr5A 94.737 38 2 0 1076 1113 107891222 107891259 4.380000e-05 60.2
29 TraesCS7D01G366400 chr5A 100.000 30 0 0 2755 2784 327222726 327222755 5.670000e-04 56.5
30 TraesCS7D01G366400 chr5A 100.000 30 0 0 2755 2784 327290331 327290360 5.670000e-04 56.5
31 TraesCS7D01G366400 chr5B 92.913 381 22 2 1842 2221 79255830 79256206 2.130000e-152 549.0
32 TraesCS7D01G366400 chr5B 92.651 381 23 2 1842 2221 525629097 525628721 9.920000e-151 544.0
33 TraesCS7D01G366400 chr5B 89.209 278 21 5 2290 2565 525628697 525628427 5.030000e-89 339.0
34 TraesCS7D01G366400 chr5B 89.130 276 23 4 2290 2565 79256230 79256498 1.810000e-88 337.0
35 TraesCS7D01G366400 chr1B 92.651 381 22 3 1842 2221 588177040 588176665 9.920000e-151 544.0
36 TraesCS7D01G366400 chr1B 79.440 822 99 26 1185 1955 495168631 495167829 6.010000e-143 518.0
37 TraesCS7D01G366400 chr1B 87.438 406 36 6 1183 1576 672840386 672839984 1.720000e-123 453.0
38 TraesCS7D01G366400 chr3B 91.468 293 19 1 1079 1371 10488340 10488054 8.170000e-107 398.0
39 TraesCS7D01G366400 chr3B 88.809 277 23 4 2290 2565 509130616 509130347 2.340000e-87 333.0
40 TraesCS7D01G366400 chr3B 89.130 92 8 2 1068 1158 519397649 519397739 3.320000e-21 113.0
41 TraesCS7D01G366400 chr3B 96.667 60 1 1 1104 1162 403864919 403864978 9.280000e-17 99.0
42 TraesCS7D01G366400 chr3B 92.500 40 2 1 686 724 788204767 788204728 5.670000e-04 56.5
43 TraesCS7D01G366400 chr4B 89.170 277 22 5 2290 2565 159985364 159985095 5.030000e-89 339.0
44 TraesCS7D01G366400 chr4B 88.809 277 23 5 2290 2565 6094703 6094434 2.340000e-87 333.0
45 TraesCS7D01G366400 chr6D 89.899 99 9 1 2711 2808 176479740 176479642 4.260000e-25 126.0
46 TraesCS7D01G366400 chr2D 96.154 78 2 1 1104 1180 558945944 558945867 4.260000e-25 126.0
47 TraesCS7D01G366400 chr3D 89.130 92 8 2 1068 1158 395036259 395036349 3.320000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G366400 chr7D 474081721 474085779 4058 True 7496.000000 7496 100.000000 1 4059 1 chr7D.!!$R1 4058
1 TraesCS7D01G366400 chr7D 591721981 591722557 576 True 676.000000 676 88.040000 1182 1768 1 chr7D.!!$R2 586
2 TraesCS7D01G366400 chr7B 498178398 498182017 3619 True 1491.333333 2747 87.697667 1 3646 3 chr7B.!!$R5 3645
3 TraesCS7D01G366400 chr7B 609919277 609919943 666 True 902.000000 902 90.856000 1534 2221 1 chr7B.!!$R4 687
4 TraesCS7D01G366400 chr7B 584786286 584786893 607 True 845.000000 845 91.599000 1534 2151 1 chr7B.!!$R3 617
5 TraesCS7D01G366400 chr7B 699661197 699661866 669 False 455.000000 560 91.665000 1842 2565 2 chr7B.!!$F1 723
6 TraesCS7D01G366400 chr7A 521949803 521953169 3366 False 441.500000 1057 86.626250 842 4054 4 chr7A.!!$F1 3212
7 TraesCS7D01G366400 chr6B 225192155 225192833 678 True 963.000000 963 92.174000 1534 2221 1 chr6B.!!$R1 687
8 TraesCS7D01G366400 chr6B 421315475 421316069 594 False 695.000000 695 88.099000 1179 1768 1 chr6B.!!$F1 589
9 TraesCS7D01G366400 chr2B 799902219 799902897 678 True 918.000000 918 91.014000 1534 2221 1 chr2B.!!$R2 687
10 TraesCS7D01G366400 chr3A 547998607 547999206 599 False 747.000000 747 89.535000 1182 1768 1 chr3A.!!$F2 586
11 TraesCS7D01G366400 chr4A 557023222 557023818 596 False 732.000000 732 89.167000 1184 1768 1 chr4A.!!$F1 584
12 TraesCS7D01G366400 chr4A 435283947 435284546 599 True 725.000000 725 88.870000 1182 1768 1 chr4A.!!$R1 586
13 TraesCS7D01G366400 chr5A 490520831 490521430 599 True 730.000000 730 89.037000 1182 1768 1 chr5A.!!$R1 586
14 TraesCS7D01G366400 chr5B 79255830 79256498 668 False 443.000000 549 91.021500 1842 2565 2 chr5B.!!$F1 723
15 TraesCS7D01G366400 chr5B 525628427 525629097 670 True 441.500000 544 90.930000 1842 2565 2 chr5B.!!$R1 723
16 TraesCS7D01G366400 chr1B 495167829 495168631 802 True 518.000000 518 79.440000 1185 1955 1 chr1B.!!$R1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 375 0.108472 GTGGCCGTTAGGTGGTCTAC 60.108 60.0 0.00 0.00 40.50 2.59 F
820 831 0.322546 GGTCACCTGGGCCTTTACAG 60.323 60.0 4.53 0.34 34.54 2.74 F
1346 1364 0.321653 ACCCCAACTGCATCTTCGTC 60.322 55.0 0.00 0.00 0.00 4.20 F
2587 2845 0.443869 CAGTACACAAGCATGGCGTC 59.556 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1364 0.535102 AGTGGGTGCGGAACTTGAAG 60.535 55.000 0.00 0.0 0.00 3.02 R
2583 2841 1.529826 GGAAAGATGCATGTTCGACGC 60.530 52.381 9.83 0.0 0.00 5.19 R
2677 2935 2.469274 AGCAACTCCAGACACATGAG 57.531 50.000 0.00 0.0 0.00 2.90 R
4003 4712 0.022853 CGATACGCGACGTGGAAAAC 59.977 55.000 15.93 0.0 44.57 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.243771 ACGAGACAACAACAACTCCCTAG 60.244 47.826 0.00 0.00 0.00 3.02
43 44 7.366011 CCCTAGAGATGAAATAAGGTTCCACTT 60.366 40.741 0.00 0.00 34.52 3.16
50 51 5.013704 TGAAATAAGGTTCCACTTGCCTAGA 59.986 40.000 0.00 0.00 31.43 2.43
58 59 0.250513 CACTTGCCTAGACCCTGTCC 59.749 60.000 0.00 0.00 32.18 4.02
68 69 4.760047 CCCTGTCCCGACAAGGCG 62.760 72.222 0.00 0.00 41.33 5.52
76 77 4.760047 CGACAAGGCGGGTGGAGG 62.760 72.222 0.00 0.00 0.00 4.30
99 100 3.850122 TGTCTCTGTTAGATGTCACGG 57.150 47.619 0.00 0.00 36.36 4.94
103 104 4.023980 TCTCTGTTAGATGTCACGGGATT 58.976 43.478 0.00 0.00 0.00 3.01
104 105 4.466370 TCTCTGTTAGATGTCACGGGATTT 59.534 41.667 0.00 0.00 0.00 2.17
108 109 2.879103 AGATGTCACGGGATTTGGTT 57.121 45.000 0.00 0.00 0.00 3.67
116 117 0.684535 CGGGATTTGGTTGGCCTTTT 59.315 50.000 3.32 0.00 35.27 2.27
118 119 2.300437 CGGGATTTGGTTGGCCTTTTTA 59.700 45.455 3.32 0.00 35.27 1.52
123 124 6.373216 GGGATTTGGTTGGCCTTTTTATTTAC 59.627 38.462 3.32 0.00 35.27 2.01
132 133 3.733988 GCCTTTTTATTTACTGGAGCCGC 60.734 47.826 0.00 0.00 0.00 6.53
141 142 1.600636 CTGGAGCCGCTTGGTTTCA 60.601 57.895 0.00 0.00 34.16 2.69
142 143 1.152860 TGGAGCCGCTTGGTTTCAA 60.153 52.632 0.00 0.00 26.66 2.69
153 154 4.668177 CGCTTGGTTTCAATATTCGTTCGT 60.668 41.667 0.00 0.00 31.75 3.85
154 155 5.151389 GCTTGGTTTCAATATTCGTTCGTT 58.849 37.500 0.00 0.00 31.75 3.85
181 182 1.244816 GTGTGTTTAGAGGTTGGGGC 58.755 55.000 0.00 0.00 0.00 5.80
190 191 0.252239 GAGGTTGGGGCCTTCCAATT 60.252 55.000 15.58 8.24 46.97 2.32
197 198 4.890499 TGGGGCCTTCCAATTTAATCTA 57.110 40.909 0.84 0.00 37.22 1.98
199 200 4.017037 TGGGGCCTTCCAATTTAATCTACA 60.017 41.667 0.84 0.00 37.22 2.74
222 223 5.007136 CACTTCTCTTTCTTGGTGACACTTC 59.993 44.000 5.39 0.00 42.67 3.01
228 229 3.194005 TCTTGGTGACACTTCCTGTTC 57.806 47.619 5.39 0.00 42.67 3.18
230 231 3.199946 TCTTGGTGACACTTCCTGTTCTT 59.800 43.478 5.39 0.00 42.67 2.52
233 234 3.279434 GGTGACACTTCCTGTTCTTGTT 58.721 45.455 5.39 0.00 31.03 2.83
235 236 4.438744 GGTGACACTTCCTGTTCTTGTTTG 60.439 45.833 5.39 0.00 31.03 2.93
245 246 2.426738 TGTTCTTGTTTGCTGGTCCTTG 59.573 45.455 0.00 0.00 0.00 3.61
265 266 2.187163 GGCCTTAGCAGGACGACC 59.813 66.667 0.00 0.00 44.19 4.79
269 270 2.007547 GCCTTAGCAGGACGACCTTTC 61.008 57.143 2.87 0.00 45.36 2.62
285 287 3.621715 ACCTTTCGACTGTCAACTTCAAC 59.378 43.478 8.73 0.00 0.00 3.18
293 295 5.310720 ACTGTCAACTTCAACAAGGTTTC 57.689 39.130 0.00 0.00 33.37 2.78
295 297 3.445805 TGTCAACTTCAACAAGGTTTCCC 59.554 43.478 0.00 0.00 33.37 3.97
320 322 2.029666 GATGAGGGGGCGATGACG 59.970 66.667 0.00 0.00 42.93 4.35
348 350 1.873903 GCCTTTGTCTCGCTTCAGTGA 60.874 52.381 0.00 0.00 0.00 3.41
359 361 1.740025 GCTTCAGTGATTGTAGTGGCC 59.260 52.381 0.00 0.00 0.00 5.36
361 363 0.973632 TCAGTGATTGTAGTGGCCGT 59.026 50.000 0.00 0.00 0.00 5.68
372 374 0.251922 AGTGGCCGTTAGGTGGTCTA 60.252 55.000 0.00 0.00 40.50 2.59
373 375 0.108472 GTGGCCGTTAGGTGGTCTAC 60.108 60.000 0.00 0.00 40.50 2.59
385 387 2.756760 GGTGGTCTACGAACCTGTATGA 59.243 50.000 0.00 0.00 40.20 2.15
386 388 3.194116 GGTGGTCTACGAACCTGTATGAA 59.806 47.826 0.00 0.00 40.20 2.57
387 389 4.142004 GGTGGTCTACGAACCTGTATGAAT 60.142 45.833 0.00 0.00 40.20 2.57
388 390 5.416947 GTGGTCTACGAACCTGTATGAATT 58.583 41.667 0.00 0.00 40.20 2.17
389 391 5.873164 GTGGTCTACGAACCTGTATGAATTT 59.127 40.000 0.00 0.00 40.20 1.82
390 392 6.370718 GTGGTCTACGAACCTGTATGAATTTT 59.629 38.462 0.00 0.00 40.20 1.82
391 393 6.938030 TGGTCTACGAACCTGTATGAATTTTT 59.062 34.615 0.00 0.00 40.20 1.94
392 394 8.095792 TGGTCTACGAACCTGTATGAATTTTTA 58.904 33.333 0.00 0.00 40.20 1.52
393 395 8.385858 GGTCTACGAACCTGTATGAATTTTTAC 58.614 37.037 0.00 0.00 36.32 2.01
394 396 9.148104 GTCTACGAACCTGTATGAATTTTTACT 57.852 33.333 0.00 0.00 0.00 2.24
395 397 9.362539 TCTACGAACCTGTATGAATTTTTACTC 57.637 33.333 0.00 0.00 0.00 2.59
396 398 7.373778 ACGAACCTGTATGAATTTTTACTCC 57.626 36.000 0.00 0.00 0.00 3.85
426 428 2.543777 TGTACTTGCCCTGACAGTTC 57.456 50.000 0.93 0.00 0.00 3.01
428 430 2.143925 GTACTTGCCCTGACAGTTCAC 58.856 52.381 0.93 0.00 0.00 3.18
431 433 0.531974 TTGCCCTGACAGTTCACGAC 60.532 55.000 0.93 0.00 0.00 4.34
529 531 8.294954 TGAAACTAAGGGTGTGTTTTTCATTA 57.705 30.769 0.00 0.00 34.55 1.90
596 602 8.491045 TCCTTCTTTTCTTTTCCCACAATAAT 57.509 30.769 0.00 0.00 0.00 1.28
597 603 8.933653 TCCTTCTTTTCTTTTCCCACAATAATT 58.066 29.630 0.00 0.00 0.00 1.40
598 604 9.559732 CCTTCTTTTCTTTTCCCACAATAATTT 57.440 29.630 0.00 0.00 0.00 1.82
629 636 6.746745 TTTCTTTCTGTTAGGACGTTGTTT 57.253 33.333 0.00 0.00 0.00 2.83
648 655 4.701171 TGTTTATAGGGTTTTAGGGCGTTG 59.299 41.667 0.00 0.00 0.00 4.10
651 658 0.694196 AGGGTTTTAGGGCGTTGCTA 59.306 50.000 0.00 0.00 0.00 3.49
663 670 1.538419 GCGTTGCTATGTACTCCCTCC 60.538 57.143 0.00 0.00 0.00 4.30
664 671 1.754803 CGTTGCTATGTACTCCCTCCA 59.245 52.381 0.00 0.00 0.00 3.86
673 680 5.568620 ATGTACTCCCTCCATCCAATAAC 57.431 43.478 0.00 0.00 0.00 1.89
674 681 4.631234 TGTACTCCCTCCATCCAATAACT 58.369 43.478 0.00 0.00 0.00 2.24
675 682 5.784023 TGTACTCCCTCCATCCAATAACTA 58.216 41.667 0.00 0.00 0.00 2.24
676 683 6.390504 TGTACTCCCTCCATCCAATAACTAT 58.609 40.000 0.00 0.00 0.00 2.12
678 685 8.014263 TGTACTCCCTCCATCCAATAACTATAA 58.986 37.037 0.00 0.00 0.00 0.98
679 686 7.560796 ACTCCCTCCATCCAATAACTATAAG 57.439 40.000 0.00 0.00 0.00 1.73
680 687 7.313731 ACTCCCTCCATCCAATAACTATAAGA 58.686 38.462 0.00 0.00 0.00 2.10
681 688 7.235812 ACTCCCTCCATCCAATAACTATAAGAC 59.764 40.741 0.00 0.00 0.00 3.01
682 689 6.500751 TCCCTCCATCCAATAACTATAAGACC 59.499 42.308 0.00 0.00 0.00 3.85
683 690 6.502158 CCCTCCATCCAATAACTATAAGACCT 59.498 42.308 0.00 0.00 0.00 3.85
684 691 7.390027 CCTCCATCCAATAACTATAAGACCTG 58.610 42.308 0.00 0.00 0.00 4.00
685 692 7.316393 TCCATCCAATAACTATAAGACCTGG 57.684 40.000 0.00 0.00 0.00 4.45
686 693 6.849697 TCCATCCAATAACTATAAGACCTGGT 59.150 38.462 0.00 0.00 0.00 4.00
687 694 6.936900 CCATCCAATAACTATAAGACCTGGTG 59.063 42.308 2.82 0.00 0.00 4.17
688 695 7.420214 CCATCCAATAACTATAAGACCTGGTGT 60.420 40.741 2.82 0.00 0.00 4.16
689 696 7.120923 TCCAATAACTATAAGACCTGGTGTC 57.879 40.000 2.82 0.00 44.82 3.67
730 738 4.060192 TGGGAGGGAGTAGTAGGAGTTAT 58.940 47.826 0.00 0.00 0.00 1.89
731 739 4.485021 TGGGAGGGAGTAGTAGGAGTTATT 59.515 45.833 0.00 0.00 0.00 1.40
732 740 5.042827 TGGGAGGGAGTAGTAGGAGTTATTT 60.043 44.000 0.00 0.00 0.00 1.40
733 741 5.904169 GGGAGGGAGTAGTAGGAGTTATTTT 59.096 44.000 0.00 0.00 0.00 1.82
734 742 6.386342 GGGAGGGAGTAGTAGGAGTTATTTTT 59.614 42.308 0.00 0.00 0.00 1.94
786 796 5.451354 GGAATTACCTGGGCCTTTACATTA 58.549 41.667 4.53 0.00 35.41 1.90
791 801 2.301346 CTGGGCCTTTACATTAGCAGG 58.699 52.381 4.53 0.00 0.00 4.85
792 802 1.919654 TGGGCCTTTACATTAGCAGGA 59.080 47.619 4.53 0.00 0.00 3.86
793 803 2.310349 TGGGCCTTTACATTAGCAGGAA 59.690 45.455 4.53 0.00 0.00 3.36
794 804 3.245443 TGGGCCTTTACATTAGCAGGAAA 60.245 43.478 4.53 0.00 0.00 3.13
795 805 3.767131 GGGCCTTTACATTAGCAGGAAAA 59.233 43.478 0.84 0.00 0.00 2.29
820 831 0.322546 GGTCACCTGGGCCTTTACAG 60.323 60.000 4.53 0.34 34.54 2.74
831 842 1.464997 GCCTTTACAGTGGAAGAAGCG 59.535 52.381 9.38 0.00 0.00 4.68
834 845 3.600388 CTTTACAGTGGAAGAAGCGGAT 58.400 45.455 0.00 0.00 0.00 4.18
835 846 3.695830 TTACAGTGGAAGAAGCGGATT 57.304 42.857 0.00 0.00 0.00 3.01
836 847 2.100605 ACAGTGGAAGAAGCGGATTC 57.899 50.000 0.00 0.00 38.28 2.52
837 848 1.339151 ACAGTGGAAGAAGCGGATTCC 60.339 52.381 1.78 9.21 44.42 3.01
980 998 2.525381 CGCATAGCCCTCCCCTCT 60.525 66.667 0.00 0.00 0.00 3.69
981 999 2.143419 CGCATAGCCCTCCCCTCTT 61.143 63.158 0.00 0.00 0.00 2.85
983 1001 1.773856 GCATAGCCCTCCCCTCTTCC 61.774 65.000 0.00 0.00 0.00 3.46
1003 1021 0.688087 CTACCTCCGCTTTCCTCCCT 60.688 60.000 0.00 0.00 0.00 4.20
1253 1271 2.677003 CCGTTGCATTTCGTCGGCT 61.677 57.895 0.00 0.00 35.01 5.52
1346 1364 0.321653 ACCCCAACTGCATCTTCGTC 60.322 55.000 0.00 0.00 0.00 4.20
1512 1541 3.502920 CGTTGTCTCGTCTAGATTTGCT 58.497 45.455 0.00 0.00 36.36 3.91
1565 1594 5.416083 TGGGTCGAGATGTAGTAATTTGTG 58.584 41.667 0.00 0.00 0.00 3.33
1576 1606 9.901724 GATGTAGTAATTTGTGTTGATCTAACG 57.098 33.333 0.00 0.00 42.34 3.18
1594 1624 2.334838 ACGATGGTTTCTTAGTGTCGC 58.665 47.619 0.00 0.00 0.00 5.19
1603 1633 6.183360 TGGTTTCTTAGTGTCGCTGAATTTTT 60.183 34.615 0.00 0.00 0.00 1.94
1621 1651 3.762407 TTTGTGCTGCTCACTTAGGTA 57.238 42.857 3.57 0.00 45.81 3.08
1625 1655 1.148759 GCTGCTCACTTAGGTAGCGC 61.149 60.000 0.00 0.00 39.14 5.92
1769 1832 5.983540 ACTAATTCTTGAGGACCAGCTAAG 58.016 41.667 0.00 0.00 0.00 2.18
1834 1899 6.379386 GTTAATGCTTTGGTCAGGTTTAGTC 58.621 40.000 0.00 0.00 0.00 2.59
1945 2040 7.386025 CACTATGATTGTGATATCATCGGTTGT 59.614 37.037 9.02 1.12 42.68 3.32
1946 2041 5.989551 TGATTGTGATATCATCGGTTGTG 57.010 39.130 9.02 0.00 29.82 3.33
1994 2089 8.736244 TGAACAAAAGGTTTATAAGGTAGATGC 58.264 33.333 0.00 0.00 40.63 3.91
2044 2140 4.533707 TGAATTGAGAGATGAACTGGACCT 59.466 41.667 0.00 0.00 0.00 3.85
2052 2148 5.958380 AGAGATGAACTGGACCTTACATACA 59.042 40.000 0.00 0.00 0.00 2.29
2111 2207 2.244510 TGTGGTTATCATGATGGGGCTT 59.755 45.455 18.72 0.00 0.00 4.35
2240 2358 6.360370 TGTTAGAGATAGTTCAAGCAACCT 57.640 37.500 0.00 0.00 35.28 3.50
2241 2360 6.166279 TGTTAGAGATAGTTCAAGCAACCTG 58.834 40.000 0.00 0.00 35.28 4.00
2256 2375 5.598769 AGCAACCTGTATTAATACGAGGTC 58.401 41.667 29.73 23.31 40.54 3.85
2261 2412 8.411683 CAACCTGTATTAATACGAGGTCTAACT 58.588 37.037 29.73 20.03 40.54 2.24
2273 2424 6.100004 ACGAGGTCTAACTAATCATGTTGTG 58.900 40.000 0.00 0.00 0.00 3.33
2274 2425 6.071560 ACGAGGTCTAACTAATCATGTTGTGA 60.072 38.462 0.00 0.00 42.06 3.58
2322 2504 6.296803 AGGTCTTTCCTTTTAAGTGTGGTAG 58.703 40.000 0.00 0.00 45.67 3.18
2324 2506 6.017357 GGTCTTTCCTTTTAAGTGTGGTAGTG 60.017 42.308 0.00 0.00 0.00 2.74
2326 2508 6.540914 TCTTTCCTTTTAAGTGTGGTAGTGTG 59.459 38.462 0.00 0.00 0.00 3.82
2327 2509 4.710324 TCCTTTTAAGTGTGGTAGTGTGG 58.290 43.478 0.00 0.00 0.00 4.17
2329 2511 5.366186 TCCTTTTAAGTGTGGTAGTGTGGTA 59.634 40.000 0.00 0.00 0.00 3.25
2330 2512 5.467735 CCTTTTAAGTGTGGTAGTGTGGTAC 59.532 44.000 0.00 0.00 0.00 3.34
2331 2513 4.605640 TTAAGTGTGGTAGTGTGGTACC 57.394 45.455 4.43 4.43 42.68 3.34
2380 2563 5.003160 CCCATCTTCTGTGTCATTGTTACA 58.997 41.667 0.00 0.00 0.00 2.41
2425 2610 6.801539 TTGGACTTTCAGTATAGCTTGTTG 57.198 37.500 0.00 0.00 0.00 3.33
2434 2619 7.418337 TCAGTATAGCTTGTTGTCATTCCTA 57.582 36.000 0.00 0.00 0.00 2.94
2515 2701 8.394971 TCTTTCACAATGAGAGATTTTGCTTA 57.605 30.769 0.00 0.00 33.36 3.09
2583 2841 3.752747 TGATGTTCAGTACACAAGCATGG 59.247 43.478 0.00 0.00 40.19 3.66
2585 2843 1.135972 GTTCAGTACACAAGCATGGCG 60.136 52.381 0.00 0.00 0.00 5.69
2587 2845 0.443869 CAGTACACAAGCATGGCGTC 59.556 55.000 0.00 0.00 0.00 5.19
2652 2910 5.970317 TGCATAGATTGGCTATTTCCATG 57.030 39.130 0.00 0.00 37.72 3.66
2677 2935 4.900635 AATCGTATGGTTGCAATTCCTC 57.099 40.909 0.59 0.00 0.00 3.71
2691 2949 4.190001 CAATTCCTCTCATGTGTCTGGAG 58.810 47.826 0.00 0.00 0.00 3.86
2841 3099 6.040842 ACACAGCAAATTTCACATTTAGGTCT 59.959 34.615 0.00 0.00 0.00 3.85
2874 3132 7.627939 GCTTGAATATGCTCTGTTTGTTGATCT 60.628 37.037 0.00 0.00 0.00 2.75
3065 3329 0.734889 CCATTTGTGTCATCTCCCGC 59.265 55.000 0.00 0.00 0.00 6.13
3191 3456 6.774354 AATCAGTCAAAATTCATTGTGTGC 57.226 33.333 0.00 0.00 0.00 4.57
3232 3497 7.621428 ATGTTTCTATGTTGAAGTGGATCAG 57.379 36.000 0.00 0.00 0.00 2.90
3247 3512 5.091431 GTGGATCAGAAAAGAAAATCTGCG 58.909 41.667 0.00 0.00 42.21 5.18
3252 3517 4.997395 TCAGAAAAGAAAATCTGCGCTAGT 59.003 37.500 9.73 0.00 42.21 2.57
3309 3657 3.606687 AGCGATTTCAAGTTCCCGTTAT 58.393 40.909 0.00 0.00 0.00 1.89
3311 3659 3.486875 GCGATTTCAAGTTCCCGTTATGG 60.487 47.826 0.00 0.00 37.55 2.74
3404 3842 4.093408 TCGAACATTGAGCTTAGCATGAAC 59.907 41.667 7.07 1.56 0.00 3.18
3408 3846 3.423539 TTGAGCTTAGCATGAACACCT 57.576 42.857 7.07 0.00 0.00 4.00
3409 3847 3.423539 TGAGCTTAGCATGAACACCTT 57.576 42.857 7.07 0.00 0.00 3.50
3411 3849 3.244526 TGAGCTTAGCATGAACACCTTGA 60.245 43.478 7.07 0.00 0.00 3.02
3413 3851 2.162408 GCTTAGCATGAACACCTTGACC 59.838 50.000 0.00 0.00 0.00 4.02
3441 3879 3.579151 AGTCAAAAGACAGGTACTCCCTC 59.421 47.826 0.00 0.00 43.86 4.30
3442 3880 3.323979 GTCAAAAGACAGGTACTCCCTCA 59.676 47.826 0.00 0.00 43.86 3.86
3443 3881 3.578716 TCAAAAGACAGGTACTCCCTCAG 59.421 47.826 0.00 0.00 43.86 3.35
3444 3882 3.261818 AAAGACAGGTACTCCCTCAGT 57.738 47.619 0.00 0.00 43.86 3.41
3447 3885 4.399483 AGACAGGTACTCCCTCAGTAAA 57.601 45.455 0.00 0.00 43.86 2.01
3448 3886 4.087907 AGACAGGTACTCCCTCAGTAAAC 58.912 47.826 0.00 0.00 43.86 2.01
3449 3887 4.087907 GACAGGTACTCCCTCAGTAAACT 58.912 47.826 0.00 0.00 43.86 2.66
3450 3888 5.014966 AGACAGGTACTCCCTCAGTAAACTA 59.985 44.000 0.00 0.00 43.86 2.24
3452 3890 6.262207 ACAGGTACTCCCTCAGTAAACTAAT 58.738 40.000 0.00 0.00 43.86 1.73
3453 3891 7.416731 ACAGGTACTCCCTCAGTAAACTAATA 58.583 38.462 0.00 0.00 43.86 0.98
3454 3892 8.066247 ACAGGTACTCCCTCAGTAAACTAATAT 58.934 37.037 0.00 0.00 43.86 1.28
3455 3893 9.584008 CAGGTACTCCCTCAGTAAACTAATATA 57.416 37.037 0.00 0.00 43.86 0.86
3461 3899 9.790389 CTCCCTCAGTAAACTAATATAATAGCG 57.210 37.037 0.00 0.00 0.00 4.26
3462 3900 9.305555 TCCCTCAGTAAACTAATATAATAGCGT 57.694 33.333 0.00 0.00 0.00 5.07
3499 3937 8.880991 AAGTAGTGATCTTAGTTTACAGAGGA 57.119 34.615 0.00 0.00 0.00 3.71
3500 3938 8.880991 AGTAGTGATCTTAGTTTACAGAGGAA 57.119 34.615 0.00 0.00 0.00 3.36
3501 3939 8.962679 AGTAGTGATCTTAGTTTACAGAGGAAG 58.037 37.037 0.00 0.00 0.00 3.46
3502 3940 7.784470 AGTGATCTTAGTTTACAGAGGAAGT 57.216 36.000 0.00 0.00 0.00 3.01
3514 3979 5.234466 ACAGAGGAAGTAAACAATGCTCT 57.766 39.130 4.78 4.78 41.78 4.09
3515 3980 5.241662 ACAGAGGAAGTAAACAATGCTCTC 58.758 41.667 6.89 0.00 39.48 3.20
3516 3981 4.328440 CAGAGGAAGTAAACAATGCTCTCG 59.672 45.833 6.89 2.14 39.48 4.04
3517 3982 4.220821 AGAGGAAGTAAACAATGCTCTCGA 59.779 41.667 4.78 0.00 37.30 4.04
3518 3983 4.246458 AGGAAGTAAACAATGCTCTCGAC 58.754 43.478 0.00 0.00 0.00 4.20
3519 3984 3.994392 GGAAGTAAACAATGCTCTCGACA 59.006 43.478 0.00 0.00 0.00 4.35
3520 3985 4.451096 GGAAGTAAACAATGCTCTCGACAA 59.549 41.667 0.00 0.00 0.00 3.18
3521 3986 5.049680 GGAAGTAAACAATGCTCTCGACAAA 60.050 40.000 0.00 0.00 0.00 2.83
3522 3987 6.371809 AAGTAAACAATGCTCTCGACAAAA 57.628 33.333 0.00 0.00 0.00 2.44
3523 3988 5.748592 AGTAAACAATGCTCTCGACAAAAC 58.251 37.500 0.00 0.00 0.00 2.43
3524 3989 4.630894 AAACAATGCTCTCGACAAAACA 57.369 36.364 0.00 0.00 0.00 2.83
3525 3990 3.885484 ACAATGCTCTCGACAAAACAG 57.115 42.857 0.00 0.00 0.00 3.16
3526 3991 3.466836 ACAATGCTCTCGACAAAACAGA 58.533 40.909 0.00 0.00 0.00 3.41
3527 3992 3.496130 ACAATGCTCTCGACAAAACAGAG 59.504 43.478 0.00 0.00 37.35 3.35
3528 3993 3.667497 ATGCTCTCGACAAAACAGAGA 57.333 42.857 0.00 0.00 36.52 3.10
3534 3999 5.109662 TCTCGACAAAACAGAGAGTAGTG 57.890 43.478 0.00 0.00 36.25 2.74
3535 4000 4.820173 TCTCGACAAAACAGAGAGTAGTGA 59.180 41.667 0.00 0.00 36.25 3.41
3536 4001 5.473846 TCTCGACAAAACAGAGAGTAGTGAT 59.526 40.000 0.00 0.00 36.25 3.06
3537 4002 5.700846 TCGACAAAACAGAGAGTAGTGATC 58.299 41.667 0.00 0.00 0.00 2.92
3538 4003 4.859798 CGACAAAACAGAGAGTAGTGATCC 59.140 45.833 0.00 0.00 0.00 3.36
3539 4004 5.564848 CGACAAAACAGAGAGTAGTGATCCA 60.565 44.000 0.00 0.00 0.00 3.41
3540 4005 6.174720 ACAAAACAGAGAGTAGTGATCCAA 57.825 37.500 0.00 0.00 0.00 3.53
3541 4006 6.226787 ACAAAACAGAGAGTAGTGATCCAAG 58.773 40.000 0.00 0.00 0.00 3.61
3567 4033 5.019785 TCTTATTTCTTTACGGAGGGAGC 57.980 43.478 0.00 0.00 0.00 4.70
3586 4052 8.887036 AGGGAGCACAAATTAAAAAGTAAAAG 57.113 30.769 0.00 0.00 0.00 2.27
3587 4053 8.700973 AGGGAGCACAAATTAAAAAGTAAAAGA 58.299 29.630 0.00 0.00 0.00 2.52
3588 4054 9.320352 GGGAGCACAAATTAAAAAGTAAAAGAA 57.680 29.630 0.00 0.00 0.00 2.52
3625 4114 0.319900 AACAATGCTGCGTCTCGACT 60.320 50.000 0.00 0.00 0.00 4.18
3626 4115 1.010935 ACAATGCTGCGTCTCGACTG 61.011 55.000 0.00 0.00 0.00 3.51
3651 4140 1.264288 CACCTCTGAAAACCAACTCGC 59.736 52.381 0.00 0.00 0.00 5.03
3661 4150 6.927416 TGAAAACCAACTCGCTATAGTTCTA 58.073 36.000 0.84 0.00 37.61 2.10
3662 4151 7.033791 TGAAAACCAACTCGCTATAGTTCTAG 58.966 38.462 0.84 0.00 37.61 2.43
3663 4152 4.571372 ACCAACTCGCTATAGTTCTAGC 57.429 45.455 0.84 0.00 37.61 3.42
3664 4153 4.208746 ACCAACTCGCTATAGTTCTAGCT 58.791 43.478 0.84 0.00 41.61 3.32
3666 4155 5.826737 ACCAACTCGCTATAGTTCTAGCTTA 59.173 40.000 0.84 0.00 41.61 3.09
3667 4156 6.144175 CCAACTCGCTATAGTTCTAGCTTAC 58.856 44.000 0.84 0.00 41.61 2.34
3668 4157 6.238676 CCAACTCGCTATAGTTCTAGCTTACA 60.239 42.308 0.84 0.00 41.61 2.41
3670 4159 7.513371 ACTCGCTATAGTTCTAGCTTACAAT 57.487 36.000 0.84 0.00 41.61 2.71
3671 4160 7.586747 ACTCGCTATAGTTCTAGCTTACAATC 58.413 38.462 0.84 0.00 41.61 2.67
3672 4161 7.446013 ACTCGCTATAGTTCTAGCTTACAATCT 59.554 37.037 0.84 0.00 41.61 2.40
3674 4163 8.076781 TCGCTATAGTTCTAGCTTACAATCTTG 58.923 37.037 0.84 0.00 41.61 3.02
3675 4164 7.148885 CGCTATAGTTCTAGCTTACAATCTTGC 60.149 40.741 0.84 0.00 41.61 4.01
3676 4165 7.117092 GCTATAGTTCTAGCTTACAATCTTGCC 59.883 40.741 0.84 0.00 40.79 4.52
3677 4166 5.428184 AGTTCTAGCTTACAATCTTGCCT 57.572 39.130 0.00 0.00 0.00 4.75
3678 4167 5.181748 AGTTCTAGCTTACAATCTTGCCTG 58.818 41.667 0.00 0.00 0.00 4.85
3680 4169 5.932619 TCTAGCTTACAATCTTGCCTGTA 57.067 39.130 0.00 0.00 0.00 2.74
3716 4311 6.913873 AAAAACTAACAGAAGCACGACTAA 57.086 33.333 0.00 0.00 0.00 2.24
3717 4312 6.913873 AAAACTAACAGAAGCACGACTAAA 57.086 33.333 0.00 0.00 0.00 1.85
3718 4313 5.902051 AACTAACAGAAGCACGACTAAAC 57.098 39.130 0.00 0.00 0.00 2.01
3719 4314 4.940463 ACTAACAGAAGCACGACTAAACA 58.060 39.130 0.00 0.00 0.00 2.83
3720 4315 5.353938 ACTAACAGAAGCACGACTAAACAA 58.646 37.500 0.00 0.00 0.00 2.83
3721 4316 4.531659 AACAGAAGCACGACTAAACAAC 57.468 40.909 0.00 0.00 0.00 3.32
3722 4317 3.793559 ACAGAAGCACGACTAAACAACT 58.206 40.909 0.00 0.00 0.00 3.16
3724 4319 5.353938 ACAGAAGCACGACTAAACAACTAA 58.646 37.500 0.00 0.00 0.00 2.24
3725 4320 5.462398 ACAGAAGCACGACTAAACAACTAAG 59.538 40.000 0.00 0.00 0.00 2.18
3726 4321 4.448060 AGAAGCACGACTAAACAACTAAGC 59.552 41.667 0.00 0.00 0.00 3.09
3727 4322 3.991367 AGCACGACTAAACAACTAAGCT 58.009 40.909 0.00 0.00 0.00 3.74
3728 4323 3.988517 AGCACGACTAAACAACTAAGCTC 59.011 43.478 0.00 0.00 0.00 4.09
3732 4327 4.989168 ACGACTAAACAACTAAGCTCCAAG 59.011 41.667 0.00 0.00 0.00 3.61
3733 4328 4.389077 CGACTAAACAACTAAGCTCCAAGG 59.611 45.833 0.00 0.00 0.00 3.61
3734 4329 4.652822 ACTAAACAACTAAGCTCCAAGGG 58.347 43.478 0.00 0.00 0.00 3.95
3736 4331 2.568623 ACAACTAAGCTCCAAGGGTG 57.431 50.000 0.00 0.00 0.00 4.61
3738 4333 2.039084 ACAACTAAGCTCCAAGGGTGAG 59.961 50.000 0.00 0.00 0.00 3.51
3739 4334 1.280457 ACTAAGCTCCAAGGGTGAGG 58.720 55.000 0.00 0.00 0.00 3.86
3740 4335 0.107459 CTAAGCTCCAAGGGTGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
3742 4337 2.045536 GCTCCAAGGGTGAGGCAG 60.046 66.667 0.00 0.00 0.00 4.85
3743 4338 2.045536 CTCCAAGGGTGAGGCAGC 60.046 66.667 0.00 0.00 0.00 5.25
3744 4339 2.530151 TCCAAGGGTGAGGCAGCT 60.530 61.111 0.00 0.00 31.98 4.24
3746 4341 0.840288 TCCAAGGGTGAGGCAGCTAA 60.840 55.000 0.00 0.00 31.98 3.09
3747 4342 0.393537 CCAAGGGTGAGGCAGCTAAG 60.394 60.000 0.00 0.00 31.98 2.18
3748 4343 0.393537 CAAGGGTGAGGCAGCTAAGG 60.394 60.000 0.00 0.00 31.98 2.69
3750 4345 0.547712 AGGGTGAGGCAGCTAAGGAA 60.548 55.000 0.00 0.00 31.98 3.36
3751 4346 0.328258 GGGTGAGGCAGCTAAGGAAA 59.672 55.000 0.00 0.00 31.98 3.13
3752 4347 1.271926 GGGTGAGGCAGCTAAGGAAAA 60.272 52.381 0.00 0.00 31.98 2.29
3753 4348 2.087646 GGTGAGGCAGCTAAGGAAAAG 58.912 52.381 0.00 0.00 0.00 2.27
3754 4349 2.290323 GGTGAGGCAGCTAAGGAAAAGA 60.290 50.000 0.00 0.00 0.00 2.52
3755 4350 3.006247 GTGAGGCAGCTAAGGAAAAGAG 58.994 50.000 0.00 0.00 0.00 2.85
3757 4352 1.098869 GGCAGCTAAGGAAAAGAGGC 58.901 55.000 0.00 0.00 0.00 4.70
3758 4353 1.098869 GCAGCTAAGGAAAAGAGGCC 58.901 55.000 0.00 0.00 0.00 5.19
3759 4354 1.756430 CAGCTAAGGAAAAGAGGCCC 58.244 55.000 0.00 0.00 0.00 5.80
3760 4355 0.626382 AGCTAAGGAAAAGAGGCCCC 59.374 55.000 0.00 0.00 0.00 5.80
3761 4356 0.748367 GCTAAGGAAAAGAGGCCCCG 60.748 60.000 0.00 0.00 0.00 5.73
3762 4357 0.618981 CTAAGGAAAAGAGGCCCCGT 59.381 55.000 0.00 0.00 0.00 5.28
3763 4358 0.326927 TAAGGAAAAGAGGCCCCGTG 59.673 55.000 0.00 0.00 0.00 4.94
3764 4359 1.423794 AAGGAAAAGAGGCCCCGTGA 61.424 55.000 0.00 0.00 0.00 4.35
3765 4360 1.377333 GGAAAAGAGGCCCCGTGAG 60.377 63.158 0.00 0.00 0.00 3.51
3766 4361 2.034221 AAAAGAGGCCCCGTGAGC 59.966 61.111 0.00 0.00 0.00 4.26
3774 4369 2.825836 CCCCGTGAGCCTGCAATC 60.826 66.667 0.00 0.00 0.00 2.67
3775 4370 2.270205 CCCGTGAGCCTGCAATCT 59.730 61.111 0.00 0.00 0.00 2.40
3776 4371 1.817099 CCCGTGAGCCTGCAATCTC 60.817 63.158 7.68 7.68 0.00 2.75
3777 4372 1.817099 CCGTGAGCCTGCAATCTCC 60.817 63.158 11.11 3.91 0.00 3.71
3778 4373 1.817099 CGTGAGCCTGCAATCTCCC 60.817 63.158 11.11 1.05 0.00 4.30
3779 4374 1.300963 GTGAGCCTGCAATCTCCCA 59.699 57.895 11.11 0.00 0.00 4.37
3786 4381 2.579873 CCTGCAATCTCCCAGGTTATG 58.420 52.381 0.00 0.00 42.87 1.90
3787 4382 1.952296 CTGCAATCTCCCAGGTTATGC 59.048 52.381 0.00 0.00 0.00 3.14
3788 4383 1.322442 GCAATCTCCCAGGTTATGCC 58.678 55.000 0.00 0.00 37.58 4.40
3790 4385 2.579873 CAATCTCCCAGGTTATGCCAG 58.420 52.381 0.00 0.00 40.61 4.85
3792 4387 1.152881 CTCCCAGGTTATGCCAGCC 60.153 63.158 0.00 0.00 40.61 4.85
3793 4388 2.123726 CCCAGGTTATGCCAGCCC 60.124 66.667 0.00 0.00 40.61 5.19
3795 4390 1.152881 CCAGGTTATGCCAGCCCTC 60.153 63.158 0.00 0.00 40.61 4.30
3796 4391 1.639635 CCAGGTTATGCCAGCCCTCT 61.640 60.000 0.00 0.00 40.61 3.69
3797 4392 0.257039 CAGGTTATGCCAGCCCTCTT 59.743 55.000 0.00 0.00 40.61 2.85
3798 4393 0.257039 AGGTTATGCCAGCCCTCTTG 59.743 55.000 0.00 0.00 40.61 3.02
3799 4394 1.387295 GGTTATGCCAGCCCTCTTGC 61.387 60.000 0.00 0.00 37.17 4.01
3803 4398 3.145551 GCCAGCCCTCTTGCCATG 61.146 66.667 0.00 0.00 0.00 3.66
3804 4399 3.145551 CCAGCCCTCTTGCCATGC 61.146 66.667 0.00 0.00 0.00 4.06
3806 4401 1.681327 CAGCCCTCTTGCCATGCTT 60.681 57.895 0.00 0.00 0.00 3.91
3807 4402 1.681327 AGCCCTCTTGCCATGCTTG 60.681 57.895 0.00 0.00 0.00 4.01
3808 4403 2.718073 GCCCTCTTGCCATGCTTGG 61.718 63.158 14.22 14.22 46.66 3.61
3810 4405 1.035932 CCCTCTTGCCATGCTTGGAG 61.036 60.000 22.21 11.37 46.92 3.86
3811 4406 1.664321 CCTCTTGCCATGCTTGGAGC 61.664 60.000 22.21 8.22 46.92 4.70
3813 4408 0.963856 TCTTGCCATGCTTGGAGCTG 60.964 55.000 22.21 8.54 46.92 4.24
3814 4409 2.558554 CTTGCCATGCTTGGAGCTGC 62.559 60.000 22.21 0.00 46.92 5.25
3815 4410 2.754658 GCCATGCTTGGAGCTGCT 60.755 61.111 22.21 0.00 46.92 4.24
3817 4412 1.807886 CCATGCTTGGAGCTGCTTC 59.192 57.895 13.33 0.96 46.92 3.86
3818 4413 1.428219 CATGCTTGGAGCTGCTTCG 59.572 57.895 6.82 0.00 42.97 3.79
3819 4414 1.002868 ATGCTTGGAGCTGCTTCGT 60.003 52.632 6.82 0.00 42.97 3.85
3823 4418 1.535462 GCTTGGAGCTGCTTCGTTAAA 59.465 47.619 6.82 0.00 38.45 1.52
3824 4419 2.665794 GCTTGGAGCTGCTTCGTTAAAC 60.666 50.000 6.82 0.00 38.45 2.01
3825 4420 2.248280 TGGAGCTGCTTCGTTAAACA 57.752 45.000 6.82 0.00 0.00 2.83
3826 4421 1.871039 TGGAGCTGCTTCGTTAAACAC 59.129 47.619 6.82 0.00 0.00 3.32
3827 4422 1.871039 GGAGCTGCTTCGTTAAACACA 59.129 47.619 2.53 0.00 0.00 3.72
3828 4423 2.349532 GGAGCTGCTTCGTTAAACACAC 60.350 50.000 2.53 0.00 0.00 3.82
3831 4426 4.124238 AGCTGCTTCGTTAAACACACTAA 58.876 39.130 0.00 0.00 0.00 2.24
3833 4428 5.929992 AGCTGCTTCGTTAAACACACTAATA 59.070 36.000 0.00 0.00 0.00 0.98
3834 4429 6.594159 AGCTGCTTCGTTAAACACACTAATAT 59.406 34.615 0.00 0.00 0.00 1.28
3835 4430 7.119262 AGCTGCTTCGTTAAACACACTAATATT 59.881 33.333 0.00 0.00 0.00 1.28
3837 4432 9.262472 CTGCTTCGTTAAACACACTAATATTTC 57.738 33.333 0.00 0.00 0.00 2.17
3838 4433 8.775527 TGCTTCGTTAAACACACTAATATTTCA 58.224 29.630 0.00 0.00 0.00 2.69
3950 4602 7.989826 ACCAAGTGATAATATCAACTTTCTGC 58.010 34.615 4.30 0.00 41.69 4.26
4003 4712 7.605449 TCCTTCCAAATATTTGCTTTGAGAAG 58.395 34.615 20.67 21.87 38.66 2.85
4009 4718 8.498358 CCAAATATTTGCTTTGAGAAGTTTTCC 58.502 33.333 20.67 0.00 35.99 3.13
4012 4721 3.691049 TGCTTTGAGAAGTTTTCCACG 57.309 42.857 0.00 0.00 35.25 4.94
4026 4735 2.502123 CCACGTCGCGTATCGTTGG 61.502 63.158 19.20 18.48 38.32 3.77
4045 4754 5.411831 TTGGCAATGGCAAAACATACATA 57.588 34.783 20.04 0.00 44.79 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.163612 GGCAAGTGGAACCTTATTTCATCTC 60.164 44.000 0.00 0.00 37.80 2.75
43 44 2.363795 CGGGACAGGGTCTAGGCA 60.364 66.667 0.00 0.00 32.47 4.75
68 69 0.765510 ACAGAGACAAACCTCCACCC 59.234 55.000 0.00 0.00 33.76 4.61
69 70 2.640316 AACAGAGACAAACCTCCACC 57.360 50.000 0.00 0.00 33.76 4.61
70 71 4.602340 TCTAACAGAGACAAACCTCCAC 57.398 45.455 0.00 0.00 33.76 4.02
71 72 4.593206 ACATCTAACAGAGACAAACCTCCA 59.407 41.667 0.00 0.00 36.87 3.86
72 73 5.153950 ACATCTAACAGAGACAAACCTCC 57.846 43.478 0.00 0.00 36.87 4.30
73 74 5.635700 GTGACATCTAACAGAGACAAACCTC 59.364 44.000 0.00 0.00 36.87 3.85
74 75 5.542779 GTGACATCTAACAGAGACAAACCT 58.457 41.667 0.00 0.00 36.87 3.50
75 76 4.386049 CGTGACATCTAACAGAGACAAACC 59.614 45.833 0.00 0.00 36.87 3.27
76 77 4.386049 CCGTGACATCTAACAGAGACAAAC 59.614 45.833 0.00 0.00 36.87 2.93
99 100 7.119116 CAGTAAATAAAAAGGCCAACCAAATCC 59.881 37.037 5.01 0.00 39.06 3.01
103 104 5.602978 TCCAGTAAATAAAAAGGCCAACCAA 59.397 36.000 5.01 0.00 39.06 3.67
104 105 5.148502 TCCAGTAAATAAAAAGGCCAACCA 58.851 37.500 5.01 0.00 39.06 3.67
108 109 3.767131 GGCTCCAGTAAATAAAAAGGCCA 59.233 43.478 5.01 0.00 36.31 5.36
116 117 2.026636 ACCAAGCGGCTCCAGTAAATAA 60.027 45.455 1.45 0.00 34.57 1.40
118 119 0.328258 ACCAAGCGGCTCCAGTAAAT 59.672 50.000 1.45 0.00 34.57 1.40
123 124 1.172180 TTGAAACCAAGCGGCTCCAG 61.172 55.000 1.45 0.00 34.57 3.86
132 133 6.635239 ACAAACGAACGAATATTGAAACCAAG 59.365 34.615 0.14 0.00 0.00 3.61
141 142 5.119588 ACACGATCACAAACGAACGAATATT 59.880 36.000 0.14 0.00 35.42 1.28
142 143 4.624024 ACACGATCACAAACGAACGAATAT 59.376 37.500 0.14 0.00 35.42 1.28
153 154 4.699637 ACCTCTAAACACACGATCACAAA 58.300 39.130 0.00 0.00 0.00 2.83
154 155 4.330944 ACCTCTAAACACACGATCACAA 57.669 40.909 0.00 0.00 0.00 3.33
181 182 9.454859 AAGAGAAGTGTAGATTAAATTGGAAGG 57.545 33.333 0.00 0.00 0.00 3.46
190 191 8.647796 TCACCAAGAAAGAGAAGTGTAGATTAA 58.352 33.333 0.00 0.00 0.00 1.40
197 198 4.080863 AGTGTCACCAAGAAAGAGAAGTGT 60.081 41.667 0.00 0.00 0.00 3.55
199 200 4.762289 AGTGTCACCAAGAAAGAGAAGT 57.238 40.909 0.00 0.00 0.00 3.01
209 210 3.199880 AGAACAGGAAGTGTCACCAAG 57.800 47.619 0.00 0.00 39.03 3.61
222 223 1.338020 GGACCAGCAAACAAGAACAGG 59.662 52.381 0.00 0.00 0.00 4.00
228 229 0.675633 CCCAAGGACCAGCAAACAAG 59.324 55.000 0.00 0.00 0.00 3.16
230 231 1.152567 CCCCAAGGACCAGCAAACA 60.153 57.895 0.00 0.00 33.47 2.83
233 234 4.299796 GCCCCCAAGGACCAGCAA 62.300 66.667 0.00 0.00 38.24 3.91
245 246 4.176752 CGTCCTGCTAAGGCCCCC 62.177 72.222 0.00 0.00 44.11 5.40
265 266 4.857871 TGTTGAAGTTGACAGTCGAAAG 57.142 40.909 0.00 0.00 0.00 2.62
269 270 2.936498 ACCTTGTTGAAGTTGACAGTCG 59.064 45.455 0.00 0.00 0.00 4.18
270 271 4.965119 AACCTTGTTGAAGTTGACAGTC 57.035 40.909 0.00 0.00 0.00 3.51
271 272 4.157840 GGAAACCTTGTTGAAGTTGACAGT 59.842 41.667 0.00 0.00 0.00 3.55
272 273 4.672409 GGAAACCTTGTTGAAGTTGACAG 58.328 43.478 0.00 0.00 0.00 3.51
273 274 4.712122 GGAAACCTTGTTGAAGTTGACA 57.288 40.909 0.00 0.00 0.00 3.58
293 295 3.227276 CCCTCATCGGAGTCGGGG 61.227 72.222 0.00 0.00 39.64 5.73
295 297 3.227276 CCCCCTCATCGGAGTCGG 61.227 72.222 0.00 0.00 39.64 4.79
314 316 4.760047 AGGCGCACCACCGTCATC 62.760 66.667 10.83 0.00 39.06 2.92
320 322 2.594592 AGACAAAGGCGCACCACC 60.595 61.111 10.83 0.00 39.06 4.61
322 324 2.664851 CGAGACAAAGGCGCACCA 60.665 61.111 10.83 0.00 39.06 4.17
348 350 1.065709 CCACCTAACGGCCACTACAAT 60.066 52.381 2.24 0.00 0.00 2.71
359 361 1.815003 AGGTTCGTAGACCACCTAACG 59.185 52.381 7.82 0.00 45.08 3.18
361 363 2.880443 ACAGGTTCGTAGACCACCTAA 58.120 47.619 7.82 0.00 45.13 2.69
372 374 7.166167 AGGAGTAAAAATTCATACAGGTTCGT 58.834 34.615 4.11 0.00 0.00 3.85
373 375 7.611213 AGGAGTAAAAATTCATACAGGTTCG 57.389 36.000 4.11 0.00 0.00 3.95
387 389 9.895138 AAGTACAAAGAACACTAGGAGTAAAAA 57.105 29.630 0.00 0.00 0.00 1.94
388 390 9.321562 CAAGTACAAAGAACACTAGGAGTAAAA 57.678 33.333 0.00 0.00 0.00 1.52
389 391 7.440255 GCAAGTACAAAGAACACTAGGAGTAAA 59.560 37.037 0.00 0.00 0.00 2.01
390 392 6.927381 GCAAGTACAAAGAACACTAGGAGTAA 59.073 38.462 0.00 0.00 0.00 2.24
391 393 6.453092 GCAAGTACAAAGAACACTAGGAGTA 58.547 40.000 0.00 0.00 0.00 2.59
392 394 5.298347 GCAAGTACAAAGAACACTAGGAGT 58.702 41.667 0.00 0.00 0.00 3.85
393 395 4.691216 GGCAAGTACAAAGAACACTAGGAG 59.309 45.833 0.00 0.00 0.00 3.69
394 396 4.504340 GGGCAAGTACAAAGAACACTAGGA 60.504 45.833 0.00 0.00 0.00 2.94
395 397 3.751698 GGGCAAGTACAAAGAACACTAGG 59.248 47.826 0.00 0.00 0.00 3.02
396 398 4.452455 CAGGGCAAGTACAAAGAACACTAG 59.548 45.833 0.00 0.00 0.00 2.57
407 409 1.765904 TGAACTGTCAGGGCAAGTACA 59.234 47.619 4.53 0.00 0.00 2.90
431 433 3.131223 TGGCAGAAGAACTTCCGATCTAG 59.869 47.826 10.41 0.00 40.33 2.43
566 572 6.893005 TGTGGGAAAAGAAAAGAAGGAAGTTA 59.107 34.615 0.00 0.00 0.00 2.24
570 576 6.806668 ATTGTGGGAAAAGAAAAGAAGGAA 57.193 33.333 0.00 0.00 0.00 3.36
599 605 7.992008 ACGTCCTAACAGAAAGAAATGAAAAA 58.008 30.769 0.00 0.00 0.00 1.94
600 606 7.562454 ACGTCCTAACAGAAAGAAATGAAAA 57.438 32.000 0.00 0.00 0.00 2.29
601 607 7.066525 ACAACGTCCTAACAGAAAGAAATGAAA 59.933 33.333 0.00 0.00 0.00 2.69
602 608 6.540914 ACAACGTCCTAACAGAAAGAAATGAA 59.459 34.615 0.00 0.00 0.00 2.57
604 610 6.300354 ACAACGTCCTAACAGAAAGAAATG 57.700 37.500 0.00 0.00 0.00 2.32
605 611 6.937436 AACAACGTCCTAACAGAAAGAAAT 57.063 33.333 0.00 0.00 0.00 2.17
606 612 6.746745 AAACAACGTCCTAACAGAAAGAAA 57.253 33.333 0.00 0.00 0.00 2.52
629 636 2.506644 AGCAACGCCCTAAAACCCTATA 59.493 45.455 0.00 0.00 0.00 1.31
648 655 2.609747 TGGATGGAGGGAGTACATAGC 58.390 52.381 0.00 0.00 0.00 2.97
651 658 5.227593 AGTTATTGGATGGAGGGAGTACAT 58.772 41.667 0.00 0.00 0.00 2.29
663 670 7.509546 ACACCAGGTCTTATAGTTATTGGATG 58.490 38.462 0.00 0.00 0.00 3.51
664 671 7.691993 ACACCAGGTCTTATAGTTATTGGAT 57.308 36.000 0.00 0.00 0.00 3.41
686 693 8.106462 TCCCATAATATGAGAGTGTTTTTGACA 58.894 33.333 1.10 0.00 35.42 3.58
687 694 8.506168 TCCCATAATATGAGAGTGTTTTTGAC 57.494 34.615 1.10 0.00 0.00 3.18
688 695 7.775093 CCTCCCATAATATGAGAGTGTTTTTGA 59.225 37.037 10.26 0.00 33.74 2.69
689 696 7.013655 CCCTCCCATAATATGAGAGTGTTTTTG 59.986 40.741 10.26 0.00 33.74 2.44
690 697 7.062957 CCCTCCCATAATATGAGAGTGTTTTT 58.937 38.462 10.26 0.00 33.74 1.94
696 703 5.361630 ACTCCCTCCCATAATATGAGAGT 57.638 43.478 10.26 7.27 33.74 3.24
698 705 6.485388 ACTACTCCCTCCCATAATATGAGA 57.515 41.667 1.10 0.00 0.00 3.27
758 766 1.844497 AGGCCCAGGTAATTCCTACAC 59.156 52.381 0.00 0.00 46.24 2.90
766 776 4.079443 TGCTAATGTAAAGGCCCAGGTAAT 60.079 41.667 0.00 0.00 0.00 1.89
804 814 0.609131 CCACTGTAAAGGCCCAGGTG 60.609 60.000 10.94 6.76 32.90 4.00
820 831 1.740025 CAAGGAATCCGCTTCTTCCAC 59.260 52.381 9.75 0.00 42.83 4.02
831 842 5.694006 CACTATCTCACGAATCAAGGAATCC 59.306 44.000 0.00 0.00 0.00 3.01
834 845 5.914898 TCACTATCTCACGAATCAAGGAA 57.085 39.130 0.00 0.00 0.00 3.36
835 846 5.163509 CCTTCACTATCTCACGAATCAAGGA 60.164 44.000 0.00 0.00 30.13 3.36
836 847 5.046529 CCTTCACTATCTCACGAATCAAGG 58.953 45.833 0.00 0.00 0.00 3.61
837 848 4.505922 GCCTTCACTATCTCACGAATCAAG 59.494 45.833 0.00 0.00 0.00 3.02
968 986 1.947254 TAGGGAAGAGGGGAGGGCT 60.947 63.158 0.00 0.00 0.00 5.19
969 987 1.766864 GTAGGGAAGAGGGGAGGGC 60.767 68.421 0.00 0.00 0.00 5.19
980 998 0.252558 AGGAAAGCGGAGGTAGGGAA 60.253 55.000 0.00 0.00 37.06 3.97
981 999 0.686769 GAGGAAAGCGGAGGTAGGGA 60.687 60.000 0.00 0.00 37.06 4.20
983 1001 1.687297 GGGAGGAAAGCGGAGGTAGG 61.687 65.000 0.00 0.00 37.06 3.18
1253 1271 1.724623 GCACACGAACGCTTCAGAATA 59.275 47.619 0.00 0.00 0.00 1.75
1346 1364 0.535102 AGTGGGTGCGGAACTTGAAG 60.535 55.000 0.00 0.00 0.00 3.02
1512 1541 3.120338 GCACAGCGCAAACAAATACTAGA 60.120 43.478 11.47 0.00 41.79 2.43
1565 1594 7.331193 ACACTAAGAAACCATCGTTAGATCAAC 59.669 37.037 0.00 0.00 34.23 3.18
1576 1606 3.585862 TCAGCGACACTAAGAAACCATC 58.414 45.455 0.00 0.00 0.00 3.51
1644 1675 6.603940 AGCATAAAATGAAAGCAACCCTAA 57.396 33.333 0.00 0.00 0.00 2.69
1649 1680 5.160641 TCCGAAGCATAAAATGAAAGCAAC 58.839 37.500 0.00 0.00 0.00 4.17
1757 1819 2.031495 AGGTTGACTTAGCTGGTCCT 57.969 50.000 15.70 6.81 33.22 3.85
1945 2040 7.542890 TCAGAAAAAGTATGCAAACAACTTCA 58.457 30.769 0.00 0.00 32.42 3.02
1946 2041 7.985634 TCAGAAAAAGTATGCAAACAACTTC 57.014 32.000 0.00 0.00 32.42 3.01
1994 2089 4.456911 ACAAGACTGACAGGCATGTTAATG 59.543 41.667 13.40 2.54 40.68 1.90
2007 2102 4.816385 TCTCAATTCACCAACAAGACTGAC 59.184 41.667 0.00 0.00 0.00 3.51
2014 2109 6.016860 CAGTTCATCTCTCAATTCACCAACAA 60.017 38.462 0.00 0.00 0.00 2.83
2052 2148 6.816140 CACAGACAAACCTTTGGTTAAACAAT 59.184 34.615 6.80 0.00 46.20 2.71
2111 2207 5.946377 TCAGTTACAGAGTAAGCTCATCTGA 59.054 40.000 22.56 9.10 42.48 3.27
2151 2247 8.902540 TTCAGAAGACTAAATGCTAACAAGAA 57.097 30.769 0.00 0.00 0.00 2.52
2152 2248 9.507329 AATTCAGAAGACTAAATGCTAACAAGA 57.493 29.630 0.00 0.00 0.00 3.02
2166 2262 8.951243 GGATTAGCACTAAAAATTCAGAAGACT 58.049 33.333 0.00 0.00 0.00 3.24
2179 2277 7.836685 TCAATACATTTGGGGATTAGCACTAAA 59.163 33.333 0.00 0.00 34.69 1.85
2227 2337 7.101054 TCGTATTAATACAGGTTGCTTGAACT 58.899 34.615 22.27 0.00 32.45 3.01
2231 2341 5.815740 ACCTCGTATTAATACAGGTTGCTTG 59.184 40.000 27.04 11.75 39.50 4.01
2250 2369 6.330278 TCACAACATGATTAGTTAGACCTCG 58.670 40.000 0.00 0.00 29.99 4.63
2265 2416 8.853126 ACATTCCCTATTCATATTCACAACATG 58.147 33.333 0.00 0.00 0.00 3.21
2282 2433 7.571025 GGAAAGACCTATACAAACATTCCCTA 58.429 38.462 0.00 0.00 35.41 3.53
2322 2504 5.160641 CACATTAGCAAAATGGTACCACAC 58.839 41.667 19.09 5.03 29.08 3.82
2324 2506 5.160641 CACACATTAGCAAAATGGTACCAC 58.839 41.667 19.09 3.71 29.08 4.16
2326 2508 4.082245 AGCACACATTAGCAAAATGGTACC 60.082 41.667 4.43 4.43 29.08 3.34
2327 2509 5.059404 AGCACACATTAGCAAAATGGTAC 57.941 39.130 14.18 6.30 29.08 3.34
2329 2511 4.158394 CCTAGCACACATTAGCAAAATGGT 59.842 41.667 14.18 7.88 32.14 3.55
2330 2512 4.158394 ACCTAGCACACATTAGCAAAATGG 59.842 41.667 14.18 7.40 32.14 3.16
2331 2513 5.314923 ACCTAGCACACATTAGCAAAATG 57.685 39.130 9.54 9.54 0.00 2.32
2332 2514 5.711976 AGAACCTAGCACACATTAGCAAAAT 59.288 36.000 0.00 0.00 0.00 1.82
2434 2619 9.771915 CAACAAGCACAACAAATAAAAAGAAAT 57.228 25.926 0.00 0.00 0.00 2.17
2522 2708 9.162764 GAAAGTAACCACTCTATAGCATGAAAA 57.837 33.333 0.00 0.00 32.29 2.29
2523 2709 8.318412 TGAAAGTAACCACTCTATAGCATGAAA 58.682 33.333 0.00 0.00 32.29 2.69
2524 2710 7.847096 TGAAAGTAACCACTCTATAGCATGAA 58.153 34.615 0.00 0.00 32.29 2.57
2525 2711 7.418337 TGAAAGTAACCACTCTATAGCATGA 57.582 36.000 0.00 0.00 32.29 3.07
2544 2800 6.201234 TGAACATCACAAAACATGCATGAAAG 59.799 34.615 32.75 19.67 0.00 2.62
2583 2841 1.529826 GGAAAGATGCATGTTCGACGC 60.530 52.381 9.83 0.00 0.00 5.19
2585 2843 4.572389 ACTATGGAAAGATGCATGTTCGAC 59.428 41.667 9.83 4.12 38.19 4.20
2587 2845 5.178252 CCTACTATGGAAAGATGCATGTTCG 59.822 44.000 9.83 1.14 38.19 3.95
2652 2910 4.798387 GGAATTGCAACCATACGATTTCAC 59.202 41.667 0.00 0.00 0.00 3.18
2659 2917 3.270027 TGAGAGGAATTGCAACCATACG 58.730 45.455 0.00 0.00 0.00 3.06
2677 2935 2.469274 AGCAACTCCAGACACATGAG 57.531 50.000 0.00 0.00 0.00 2.90
2691 2949 7.970061 TGACAAGAATGCAAAGATATTAGCAAC 59.030 33.333 0.00 0.00 40.76 4.17
2841 3099 3.557185 CAGAGCATATTCAAGCGCAACTA 59.443 43.478 11.47 0.00 35.48 2.24
2874 3132 5.562696 GCAGAGAAAATTGATTCGGTCACAA 60.563 40.000 0.00 0.00 36.32 3.33
3109 3374 9.073475 GTATATGAGATAGTCTGACCAAGTTCT 57.927 37.037 3.76 0.20 0.00 3.01
3232 3497 6.128526 ACTGTACTAGCGCAGATTTTCTTTTC 60.129 38.462 11.47 0.00 36.62 2.29
3247 3512 7.168135 ACGTTGTTAGTTGTTAACTGTACTAGC 59.832 37.037 7.22 12.92 42.84 3.42
3252 3517 9.526713 TCATTACGTTGTTAGTTGTTAACTGTA 57.473 29.630 7.22 0.00 42.84 2.74
3373 3811 7.910162 TGCTAAGCTCAATGTTCGATATTTTTC 59.090 33.333 0.00 0.00 0.00 2.29
3404 3842 1.966451 GACTTGCCCGGTCAAGGTG 60.966 63.158 27.47 5.80 45.72 4.00
3409 3847 0.181587 TCTTTTGACTTGCCCGGTCA 59.818 50.000 0.00 0.00 41.23 4.02
3411 3849 2.715536 GTCTTTTGACTTGCCCGGT 58.284 52.632 0.00 0.00 45.55 5.28
3458 3896 9.303537 GATCACTACTTTAAGATTCTAAACGCT 57.696 33.333 0.00 0.00 0.00 5.07
3459 3897 9.303537 AGATCACTACTTTAAGATTCTAAACGC 57.696 33.333 0.00 0.00 0.00 4.84
3473 3911 9.310449 TCCTCTGTAAACTAAGATCACTACTTT 57.690 33.333 0.00 0.00 0.00 2.66
3477 3915 8.880991 ACTTCCTCTGTAAACTAAGATCACTA 57.119 34.615 0.00 0.00 0.00 2.74
3490 3928 6.769512 AGAGCATTGTTTACTTCCTCTGTAA 58.230 36.000 0.00 0.00 0.00 2.41
3491 3929 6.360370 AGAGCATTGTTTACTTCCTCTGTA 57.640 37.500 0.00 0.00 0.00 2.74
3492 3930 5.234466 AGAGCATTGTTTACTTCCTCTGT 57.766 39.130 0.00 0.00 0.00 3.41
3494 3932 4.220821 TCGAGAGCATTGTTTACTTCCTCT 59.779 41.667 0.00 0.00 0.00 3.69
3495 3933 4.327627 GTCGAGAGCATTGTTTACTTCCTC 59.672 45.833 0.00 0.00 0.00 3.71
3497 3935 3.994392 TGTCGAGAGCATTGTTTACTTCC 59.006 43.478 0.00 0.00 0.00 3.46
3498 3936 5.591643 TTGTCGAGAGCATTGTTTACTTC 57.408 39.130 0.00 0.00 0.00 3.01
3499 3937 6.183360 TGTTTTGTCGAGAGCATTGTTTACTT 60.183 34.615 0.00 0.00 0.00 2.24
3500 3938 5.295787 TGTTTTGTCGAGAGCATTGTTTACT 59.704 36.000 0.00 0.00 0.00 2.24
3501 3939 5.507077 TGTTTTGTCGAGAGCATTGTTTAC 58.493 37.500 0.00 0.00 0.00 2.01
3502 3940 5.525745 TCTGTTTTGTCGAGAGCATTGTTTA 59.474 36.000 0.00 0.00 0.00 2.01
3514 3979 5.335740 GGATCACTACTCTCTGTTTTGTCGA 60.336 44.000 0.00 0.00 0.00 4.20
3515 3980 4.859798 GGATCACTACTCTCTGTTTTGTCG 59.140 45.833 0.00 0.00 0.00 4.35
3516 3981 5.784177 TGGATCACTACTCTCTGTTTTGTC 58.216 41.667 0.00 0.00 0.00 3.18
3517 3982 5.808366 TGGATCACTACTCTCTGTTTTGT 57.192 39.130 0.00 0.00 0.00 2.83
3518 3983 6.146837 CACTTGGATCACTACTCTCTGTTTTG 59.853 42.308 0.00 0.00 0.00 2.44
3519 3984 6.226787 CACTTGGATCACTACTCTCTGTTTT 58.773 40.000 0.00 0.00 0.00 2.43
3520 3985 5.788450 CACTTGGATCACTACTCTCTGTTT 58.212 41.667 0.00 0.00 0.00 2.83
3521 3986 4.322349 GCACTTGGATCACTACTCTCTGTT 60.322 45.833 0.00 0.00 0.00 3.16
3522 3987 3.194542 GCACTTGGATCACTACTCTCTGT 59.805 47.826 0.00 0.00 0.00 3.41
3523 3988 3.446873 AGCACTTGGATCACTACTCTCTG 59.553 47.826 0.00 0.00 0.00 3.35
3524 3989 3.699038 GAGCACTTGGATCACTACTCTCT 59.301 47.826 0.00 0.00 0.00 3.10
3525 3990 3.699038 AGAGCACTTGGATCACTACTCTC 59.301 47.826 0.00 0.00 33.23 3.20
3526 3991 3.707316 AGAGCACTTGGATCACTACTCT 58.293 45.455 0.00 0.00 33.23 3.24
3527 3992 4.464069 AAGAGCACTTGGATCACTACTC 57.536 45.455 0.00 0.00 33.23 2.59
3528 3993 6.552445 AATAAGAGCACTTGGATCACTACT 57.448 37.500 6.66 0.00 37.53 2.57
3529 3994 7.044798 AGAAATAAGAGCACTTGGATCACTAC 58.955 38.462 6.66 0.00 37.53 2.73
3530 3995 7.187824 AGAAATAAGAGCACTTGGATCACTA 57.812 36.000 6.66 0.00 37.53 2.74
3531 3996 6.059787 AGAAATAAGAGCACTTGGATCACT 57.940 37.500 6.66 0.00 37.53 3.41
3532 3997 6.749923 AAGAAATAAGAGCACTTGGATCAC 57.250 37.500 6.66 0.00 37.53 3.06
3533 3998 7.064609 CGTAAAGAAATAAGAGCACTTGGATCA 59.935 37.037 6.66 0.00 37.53 2.92
3534 3999 7.402640 CGTAAAGAAATAAGAGCACTTGGATC 58.597 38.462 6.66 2.19 37.53 3.36
3535 4000 6.316390 CCGTAAAGAAATAAGAGCACTTGGAT 59.684 38.462 6.66 0.00 37.53 3.41
3536 4001 5.642063 CCGTAAAGAAATAAGAGCACTTGGA 59.358 40.000 6.66 0.00 37.53 3.53
3537 4002 5.642063 TCCGTAAAGAAATAAGAGCACTTGG 59.358 40.000 6.66 0.00 37.53 3.61
3538 4003 6.183360 CCTCCGTAAAGAAATAAGAGCACTTG 60.183 42.308 6.66 0.00 37.53 3.16
3539 4004 5.875359 CCTCCGTAAAGAAATAAGAGCACTT 59.125 40.000 1.05 1.05 39.81 3.16
3540 4005 5.420409 CCTCCGTAAAGAAATAAGAGCACT 58.580 41.667 0.00 0.00 0.00 4.40
3541 4006 4.571176 CCCTCCGTAAAGAAATAAGAGCAC 59.429 45.833 0.00 0.00 0.00 4.40
3586 4052 1.853963 TCTCAGCTCAGGGTAGGTTC 58.146 55.000 0.00 0.00 0.00 3.62
3587 4053 2.303311 GTTTCTCAGCTCAGGGTAGGTT 59.697 50.000 0.00 0.00 0.00 3.50
3588 4054 1.903183 GTTTCTCAGCTCAGGGTAGGT 59.097 52.381 0.00 0.00 0.00 3.08
3593 4059 1.471684 GCATTGTTTCTCAGCTCAGGG 59.528 52.381 0.00 0.00 0.00 4.45
3625 4114 1.562008 TGGTTTTCAGAGGTGTCCACA 59.438 47.619 0.00 0.00 0.00 4.17
3626 4115 2.341846 TGGTTTTCAGAGGTGTCCAC 57.658 50.000 0.00 0.00 0.00 4.02
3651 4140 8.364142 AGGCAAGATTGTAAGCTAGAACTATAG 58.636 37.037 0.00 0.00 0.00 1.31
3661 4150 9.627123 TTTAATATACAGGCAAGATTGTAAGCT 57.373 29.630 0.00 0.00 33.85 3.74
3666 4155 8.952278 TCGTTTTTAATATACAGGCAAGATTGT 58.048 29.630 0.00 0.00 0.00 2.71
3667 4156 9.781834 TTCGTTTTTAATATACAGGCAAGATTG 57.218 29.630 0.00 0.00 0.00 2.67
3698 4288 5.462398 AGTTGTTTAGTCGTGCTTCTGTTAG 59.538 40.000 0.00 0.00 0.00 2.34
3699 4289 5.353938 AGTTGTTTAGTCGTGCTTCTGTTA 58.646 37.500 0.00 0.00 0.00 2.41
3705 4300 4.377897 AGCTTAGTTGTTTAGTCGTGCTT 58.622 39.130 0.00 0.00 0.00 3.91
3707 4302 3.123116 GGAGCTTAGTTGTTTAGTCGTGC 59.877 47.826 0.00 0.00 0.00 5.34
3716 4311 2.441750 TCACCCTTGGAGCTTAGTTGTT 59.558 45.455 0.00 0.00 0.00 2.83
3717 4312 2.039084 CTCACCCTTGGAGCTTAGTTGT 59.961 50.000 0.00 0.00 0.00 3.32
3718 4313 2.616510 CCTCACCCTTGGAGCTTAGTTG 60.617 54.545 0.00 0.00 0.00 3.16
3719 4314 1.630878 CCTCACCCTTGGAGCTTAGTT 59.369 52.381 0.00 0.00 0.00 2.24
3720 4315 1.280457 CCTCACCCTTGGAGCTTAGT 58.720 55.000 0.00 0.00 0.00 2.24
3721 4316 0.107459 GCCTCACCCTTGGAGCTTAG 60.107 60.000 0.00 0.00 0.00 2.18
3722 4317 0.840288 TGCCTCACCCTTGGAGCTTA 60.840 55.000 0.00 0.00 0.00 3.09
3724 4319 2.530151 TGCCTCACCCTTGGAGCT 60.530 61.111 0.00 0.00 0.00 4.09
3725 4320 2.045536 CTGCCTCACCCTTGGAGC 60.046 66.667 0.00 0.00 0.00 4.70
3726 4321 1.267574 TAGCTGCCTCACCCTTGGAG 61.268 60.000 0.00 0.00 0.00 3.86
3727 4322 0.840288 TTAGCTGCCTCACCCTTGGA 60.840 55.000 0.00 0.00 0.00 3.53
3728 4323 0.393537 CTTAGCTGCCTCACCCTTGG 60.394 60.000 0.00 0.00 0.00 3.61
3732 4327 0.328258 TTTCCTTAGCTGCCTCACCC 59.672 55.000 0.00 0.00 0.00 4.61
3733 4328 2.087646 CTTTTCCTTAGCTGCCTCACC 58.912 52.381 0.00 0.00 0.00 4.02
3734 4329 3.006247 CTCTTTTCCTTAGCTGCCTCAC 58.994 50.000 0.00 0.00 0.00 3.51
3736 4331 2.637947 CCTCTTTTCCTTAGCTGCCTC 58.362 52.381 0.00 0.00 0.00 4.70
3738 4333 1.098869 GCCTCTTTTCCTTAGCTGCC 58.901 55.000 0.00 0.00 0.00 4.85
3739 4334 1.098869 GGCCTCTTTTCCTTAGCTGC 58.901 55.000 0.00 0.00 0.00 5.25
3740 4335 1.683319 GGGGCCTCTTTTCCTTAGCTG 60.683 57.143 0.84 0.00 0.00 4.24
3742 4337 0.748367 CGGGGCCTCTTTTCCTTAGC 60.748 60.000 0.00 0.00 0.00 3.09
3743 4338 0.618981 ACGGGGCCTCTTTTCCTTAG 59.381 55.000 0.00 0.00 0.00 2.18
3744 4339 0.326927 CACGGGGCCTCTTTTCCTTA 59.673 55.000 0.00 0.00 0.00 2.69
3746 4341 1.842381 CTCACGGGGCCTCTTTTCCT 61.842 60.000 0.00 0.00 0.00 3.36
3747 4342 1.377333 CTCACGGGGCCTCTTTTCC 60.377 63.158 0.00 0.00 0.00 3.13
3748 4343 2.041115 GCTCACGGGGCCTCTTTTC 61.041 63.158 0.00 0.00 0.00 2.29
3750 4345 4.035102 GGCTCACGGGGCCTCTTT 62.035 66.667 0.00 0.00 45.57 2.52
3757 4352 2.825836 GATTGCAGGCTCACGGGG 60.826 66.667 0.00 0.00 0.00 5.73
3758 4353 1.817099 GAGATTGCAGGCTCACGGG 60.817 63.158 11.66 0.00 0.00 5.28
3759 4354 1.817099 GGAGATTGCAGGCTCACGG 60.817 63.158 16.60 0.00 32.83 4.94
3760 4355 1.817099 GGGAGATTGCAGGCTCACG 60.817 63.158 16.60 0.00 32.83 4.35
3761 4356 0.747283 CTGGGAGATTGCAGGCTCAC 60.747 60.000 16.60 14.36 35.13 3.51
3762 4357 1.605992 CTGGGAGATTGCAGGCTCA 59.394 57.895 16.60 0.99 32.83 4.26
3763 4358 1.153005 CCTGGGAGATTGCAGGCTC 60.153 63.158 8.85 8.85 0.00 4.70
3764 4359 1.504275 AACCTGGGAGATTGCAGGCT 61.504 55.000 0.00 0.00 38.33 4.58
3765 4360 0.255890 TAACCTGGGAGATTGCAGGC 59.744 55.000 0.00 0.00 38.33 4.85
3766 4361 2.579873 CATAACCTGGGAGATTGCAGG 58.420 52.381 0.00 0.00 40.48 4.85
3767 4362 1.952296 GCATAACCTGGGAGATTGCAG 59.048 52.381 0.00 0.00 0.00 4.41
3769 4364 1.322442 GGCATAACCTGGGAGATTGC 58.678 55.000 0.00 0.00 34.51 3.56
3772 4367 0.475906 GCTGGCATAACCTGGGAGAT 59.524 55.000 0.00 0.00 40.22 2.75
3773 4368 1.635817 GGCTGGCATAACCTGGGAGA 61.636 60.000 0.00 0.00 40.22 3.71
3774 4369 1.152881 GGCTGGCATAACCTGGGAG 60.153 63.158 0.00 0.00 40.22 4.30
3775 4370 2.689691 GGGCTGGCATAACCTGGGA 61.690 63.158 2.88 0.00 40.22 4.37
3776 4371 2.123726 GGGCTGGCATAACCTGGG 60.124 66.667 2.88 0.00 40.22 4.45
3777 4372 1.152881 GAGGGCTGGCATAACCTGG 60.153 63.158 9.17 0.00 40.22 4.45
3778 4373 0.257039 AAGAGGGCTGGCATAACCTG 59.743 55.000 9.17 0.00 40.22 4.00
3779 4374 0.257039 CAAGAGGGCTGGCATAACCT 59.743 55.000 2.88 4.66 40.22 3.50
3781 4376 1.387295 GGCAAGAGGGCTGGCATAAC 61.387 60.000 2.88 0.00 43.23 1.89
3782 4377 1.076777 GGCAAGAGGGCTGGCATAA 60.077 57.895 2.88 0.00 43.23 1.90
3783 4378 1.648302 ATGGCAAGAGGGCTGGCATA 61.648 55.000 11.08 0.00 43.23 3.14
3785 4380 3.664888 ATGGCAAGAGGGCTGGCA 61.665 61.111 2.88 3.26 43.23 4.92
3786 4381 3.145551 CATGGCAAGAGGGCTGGC 61.146 66.667 0.00 0.00 43.83 4.85
3787 4382 3.145551 GCATGGCAAGAGGGCTGG 61.146 66.667 0.00 0.00 43.83 4.85
3788 4383 1.681327 AAGCATGGCAAGAGGGCTG 60.681 57.895 0.00 0.00 43.83 4.85
3790 4385 2.718073 CCAAGCATGGCAAGAGGGC 61.718 63.158 0.00 0.00 40.58 5.19
3799 4394 1.807886 GAAGCAGCTCCAAGCATGG 59.192 57.895 0.19 0.19 45.56 3.66
3803 4398 1.156736 TTAACGAAGCAGCTCCAAGC 58.843 50.000 0.00 0.00 42.84 4.01
3804 4399 2.548057 TGTTTAACGAAGCAGCTCCAAG 59.452 45.455 0.00 0.00 0.00 3.61
3806 4401 1.871039 GTGTTTAACGAAGCAGCTCCA 59.129 47.619 0.00 0.00 0.00 3.86
3807 4402 1.871039 TGTGTTTAACGAAGCAGCTCC 59.129 47.619 0.00 0.00 0.00 4.70
3808 4403 2.544267 AGTGTGTTTAACGAAGCAGCTC 59.456 45.455 0.00 0.00 0.00 4.09
3810 4405 4.461992 TTAGTGTGTTTAACGAAGCAGC 57.538 40.909 0.00 0.00 0.00 5.25
3811 4406 9.262472 GAAATATTAGTGTGTTTAACGAAGCAG 57.738 33.333 0.00 0.00 0.00 4.24
3813 4408 9.769093 ATGAAATATTAGTGTGTTTAACGAAGC 57.231 29.630 0.00 0.00 0.00 3.86
3938 4590 6.899393 TGGAGTAAAATGCAGAAAGTTGAT 57.101 33.333 0.00 0.00 0.00 2.57
4003 4712 0.022853 CGATACGCGACGTGGAAAAC 59.977 55.000 15.93 0.00 44.57 2.43
4009 4718 2.984466 CCAACGATACGCGACGTG 59.016 61.111 23.87 6.90 44.57 4.49
4012 4721 0.315059 CATTGCCAACGATACGCGAC 60.315 55.000 15.93 2.51 44.57 5.19
4026 4735 6.907206 ACATTATGTATGTTTTGCCATTGC 57.093 33.333 0.00 0.00 45.19 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.