Multiple sequence alignment - TraesCS7D01G366000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G366000 chr7D 100.000 6364 0 0 1 6364 473654594 473648231 0.000000e+00 11753
1 TraesCS7D01G366000 chr7D 93.566 715 38 6 5656 6364 529745311 529746023 0.000000e+00 1059
2 TraesCS7D01G366000 chr7D 88.750 240 24 3 2738 2975 432329206 432329444 2.240000e-74 291
3 TraesCS7D01G366000 chr7D 85.409 281 38 3 4737 5016 474006085 474005807 8.070000e-74 289
4 TraesCS7D01G366000 chr7D 80.858 303 52 6 5065 5364 474005716 474005417 3.840000e-57 233
5 TraesCS7D01G366000 chr7B 94.204 1967 68 21 3584 5539 497967828 497965897 0.000000e+00 2959
6 TraesCS7D01G366000 chr7B 91.152 1831 95 24 1 1803 497971590 497969799 0.000000e+00 2422
7 TraesCS7D01G366000 chr7B 92.063 1260 64 10 2353 3598 497969078 497967841 0.000000e+00 1740
8 TraesCS7D01G366000 chr7B 94.194 310 12 5 2125 2434 497969377 497969074 9.660000e-128 468
9 TraesCS7D01G366000 chr7B 92.027 301 17 5 1827 2122 497969805 497969507 3.550000e-112 416
10 TraesCS7D01G366000 chr7B 85.765 281 37 3 4737 5016 498086231 498085953 1.740000e-75 294
11 TraesCS7D01G366000 chr7B 80.392 306 48 7 5065 5364 498085862 498085563 8.300000e-54 222
12 TraesCS7D01G366000 chr7A 92.279 1852 67 39 3696 5540 522112635 522110853 0.000000e+00 2558
13 TraesCS7D01G366000 chr7A 83.871 899 59 39 681 1517 522115241 522114367 0.000000e+00 778
14 TraesCS7D01G366000 chr7A 81.217 575 55 24 2973 3532 522113354 522112818 1.280000e-111 414
15 TraesCS7D01G366000 chr7A 88.934 244 25 2 2737 2978 421713 421956 3.730000e-77 300
16 TraesCS7D01G366000 chr7A 85.609 271 37 2 4744 5013 522023700 522023969 3.760000e-72 283
17 TraesCS7D01G366000 chr7A 82.508 303 47 6 5065 5364 522024069 522024368 1.760000e-65 261
18 TraesCS7D01G366000 chr7A 79.282 362 37 15 2316 2656 522113754 522113410 1.070000e-52 219
19 TraesCS7D01G366000 chr4D 92.707 713 39 8 5654 6360 115066581 115067286 0.000000e+00 1016
20 TraesCS7D01G366000 chr2A 91.911 717 53 5 5651 6364 121949181 121949895 0.000000e+00 998
21 TraesCS7D01G366000 chr2A 91.926 706 39 5 5660 6364 723576672 723575984 0.000000e+00 972
22 TraesCS7D01G366000 chr6D 91.690 722 41 11 5658 6364 418768810 418768093 0.000000e+00 983
23 TraesCS7D01G366000 chr6D 87.200 125 15 1 5537 5660 443766934 443766810 2.390000e-29 141
24 TraesCS7D01G366000 chr3D 89.847 719 55 10 5657 6360 460439959 460440674 0.000000e+00 907
25 TraesCS7D01G366000 chr3D 88.079 713 71 5 5657 6360 91821085 91821792 0.000000e+00 833
26 TraesCS7D01G366000 chr3D 89.300 243 21 4 2734 2974 280046390 280046629 3.730000e-77 300
27 TraesCS7D01G366000 chr3D 82.222 180 32 0 4821 5000 516672335 516672514 8.540000e-34 156
28 TraesCS7D01G366000 chr3D 82.222 180 32 0 4821 5000 516856879 516857058 8.540000e-34 156
29 TraesCS7D01G366000 chr3B 88.375 714 65 10 5653 6356 752180112 752179407 0.000000e+00 843
30 TraesCS7D01G366000 chr3B 88.333 240 23 5 2738 2974 112514526 112514289 3.760000e-72 283
31 TraesCS7D01G366000 chr5D 87.761 719 67 11 5656 6360 14531858 14531147 0.000000e+00 821
32 TraesCS7D01G366000 chr5D 87.917 240 27 2 2738 2975 556772703 556772942 1.350000e-71 281
33 TraesCS7D01G366000 chr4B 88.285 239 24 4 2738 2974 592701694 592701458 3.760000e-72 283
34 TraesCS7D01G366000 chr1D 87.917 240 27 2 2738 2975 357277685 357277446 1.350000e-71 281
35 TraesCS7D01G366000 chr5B 86.345 249 30 4 2737 2983 403177463 403177217 1.050000e-67 268
36 TraesCS7D01G366000 chr5A 94.656 131 7 0 5115 5245 53303368 53303238 3.010000e-48 204
37 TraesCS7D01G366000 chr5A 89.516 124 6 1 4510 4633 53303592 53303476 3.970000e-32 150
38 TraesCS7D01G366000 chr1B 93.893 131 8 0 5115 5245 684302589 684302719 1.400000e-46 198
39 TraesCS7D01G366000 chr1B 90.083 121 5 1 4510 4630 684302356 684302469 3.970000e-32 150
40 TraesCS7D01G366000 chr3A 82.222 180 32 0 4821 5000 651963261 651963440 8.540000e-34 156
41 TraesCS7D01G366000 chr2D 76.066 305 69 4 5063 5365 574657148 574657450 8.540000e-34 156
42 TraesCS7D01G366000 chr6B 87.069 116 14 1 5537 5651 611502489 611502604 5.180000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G366000 chr7D 473648231 473654594 6363 True 11753.00 11753 100.00000 1 6364 1 chr7D.!!$R1 6363
1 TraesCS7D01G366000 chr7D 529745311 529746023 712 False 1059.00 1059 93.56600 5656 6364 1 chr7D.!!$F2 708
2 TraesCS7D01G366000 chr7D 474005417 474006085 668 True 261.00 289 83.13350 4737 5364 2 chr7D.!!$R2 627
3 TraesCS7D01G366000 chr7B 497965897 497971590 5693 True 1601.00 2959 92.72800 1 5539 5 chr7B.!!$R1 5538
4 TraesCS7D01G366000 chr7B 498085563 498086231 668 True 258.00 294 83.07850 4737 5364 2 chr7B.!!$R2 627
5 TraesCS7D01G366000 chr7A 522110853 522115241 4388 True 992.25 2558 84.16225 681 5540 4 chr7A.!!$R1 4859
6 TraesCS7D01G366000 chr7A 522023700 522024368 668 False 272.00 283 84.05850 4744 5364 2 chr7A.!!$F2 620
7 TraesCS7D01G366000 chr4D 115066581 115067286 705 False 1016.00 1016 92.70700 5654 6360 1 chr4D.!!$F1 706
8 TraesCS7D01G366000 chr2A 121949181 121949895 714 False 998.00 998 91.91100 5651 6364 1 chr2A.!!$F1 713
9 TraesCS7D01G366000 chr2A 723575984 723576672 688 True 972.00 972 91.92600 5660 6364 1 chr2A.!!$R1 704
10 TraesCS7D01G366000 chr6D 418768093 418768810 717 True 983.00 983 91.69000 5658 6364 1 chr6D.!!$R1 706
11 TraesCS7D01G366000 chr3D 460439959 460440674 715 False 907.00 907 89.84700 5657 6360 1 chr3D.!!$F3 703
12 TraesCS7D01G366000 chr3D 91821085 91821792 707 False 833.00 833 88.07900 5657 6360 1 chr3D.!!$F1 703
13 TraesCS7D01G366000 chr3B 752179407 752180112 705 True 843.00 843 88.37500 5653 6356 1 chr3B.!!$R2 703
14 TraesCS7D01G366000 chr5D 14531147 14531858 711 True 821.00 821 87.76100 5656 6360 1 chr5D.!!$R1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 617 0.730840 TCATACATGACGTCGTCGCT 59.269 50.000 19.81 7.61 41.18 4.93 F
1789 1899 0.248289 GGCCCTTGCAGACGTTACTA 59.752 55.000 0.00 0.00 40.13 1.82 F
2264 2512 0.698238 ATGGACCAACTTGCTGGCTA 59.302 50.000 0.00 0.00 40.45 3.93 F
2332 2580 1.544759 CCACAGCCGTAGAAAAACCCT 60.545 52.381 0.00 0.00 0.00 4.34 F
3374 3755 0.035036 GGCCGTAGCTTTCTATCCCC 59.965 60.000 0.00 0.00 39.73 4.81 F
4405 4892 0.476338 TGCCCAACTTCCACAAGCTA 59.524 50.000 0.00 0.00 32.09 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2863 0.326595 TCAAAGGTGGATAGGCGCAA 59.673 50.0 10.83 0.00 0.00 4.85 R
3024 3380 0.178961 AAGCCTCCCAAAACCTCCAC 60.179 55.0 0.00 0.00 0.00 4.02 R
3086 3461 0.187851 ATACTACCACCGGGCTAGCT 59.812 55.0 15.72 0.00 37.90 3.32 R
3466 3850 0.455633 CAAACCGACGGTAGAGGACG 60.456 60.0 22.06 0.00 33.12 4.79 R
4547 5034 1.086634 GTCATCCAGACCTTCTGCGC 61.087 60.0 0.00 0.00 42.98 6.09 R
5586 6123 0.173255 AAATGCTAAAATGGCGCGCT 59.827 45.0 32.29 13.63 0.00 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 142 7.821846 TGAAAATATTGTTGCCCTAAATCCAAC 59.178 33.333 0.00 0.00 39.32 3.77
143 145 8.602472 AATATTGTTGCCCTAAATCCAACTAA 57.398 30.769 0.00 0.00 39.53 2.24
205 207 9.691362 TTTGATTTCATAAACCTGCTACTTTTC 57.309 29.630 0.00 0.00 0.00 2.29
252 254 9.613957 CTTCATATATAGGAACAGTTGTACTCG 57.386 37.037 5.74 0.00 0.00 4.18
280 282 5.624344 ATCAATGCTTGTTCTGAGTTCAG 57.376 39.130 2.69 2.69 45.08 3.02
283 285 2.216046 TGCTTGTTCTGAGTTCAGCTG 58.784 47.619 7.63 7.63 43.46 4.24
301 303 4.095932 CAGCTGCTGATGTGTTCATACAAT 59.904 41.667 24.88 0.00 32.48 2.71
321 323 7.759489 ACAATACAAAGGTTCTATGCAAAGA 57.241 32.000 0.00 0.00 0.00 2.52
398 404 5.662208 TCCCCTTAGGAACACGTTTGATATA 59.338 40.000 0.00 0.00 43.78 0.86
413 419 7.117812 ACGTTTGATATAGGAGCCATTTAATCG 59.882 37.037 0.00 0.00 0.00 3.34
415 421 8.443937 GTTTGATATAGGAGCCATTTAATCGTC 58.556 37.037 0.00 0.00 0.00 4.20
531 540 8.708742 TGATATGTAAAACAGAGTTGTCTTTCG 58.291 33.333 0.00 0.00 36.23 3.46
535 544 8.068893 TGTAAAACAGAGTTGTCTTTCGTATC 57.931 34.615 0.00 0.00 36.23 2.24
536 545 7.707464 TGTAAAACAGAGTTGTCTTTCGTATCA 59.293 33.333 0.00 0.00 36.23 2.15
608 617 0.730840 TCATACATGACGTCGTCGCT 59.269 50.000 19.81 7.61 41.18 4.93
634 643 1.125093 TCCCCCGTTTCTCAAGCAGA 61.125 55.000 0.00 0.00 0.00 4.26
666 675 4.803426 CTGAGACCCGCTGACGCC 62.803 72.222 0.00 0.00 38.22 5.68
676 685 4.796231 CTGACGCCGAACTCCCCG 62.796 72.222 0.00 0.00 0.00 5.73
791 802 2.989571 ACTTCTCCTTTCCTTCCACCAT 59.010 45.455 0.00 0.00 0.00 3.55
884 900 5.245531 ACATAACCCACACACAAGATACAG 58.754 41.667 0.00 0.00 0.00 2.74
917 943 1.010793 AGAGAGAGAGGGAGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
943 976 4.632458 GGAGGAGATCGACGCGGC 62.632 72.222 12.47 6.41 0.00 6.53
1206 1262 8.893563 TTTTACCATCCCTAAATTGAATGACT 57.106 30.769 0.00 0.00 0.00 3.41
1211 1267 6.830324 CCATCCCTAAATTGAATGACTGAAGA 59.170 38.462 0.00 0.00 0.00 2.87
1415 1487 0.562177 TTCCTAGTATGGCCCCCGTA 59.438 55.000 0.00 0.00 0.00 4.02
1432 1506 0.390472 GTAGCGCATAGGCCATCTCC 60.390 60.000 11.47 0.00 36.38 3.71
1456 1552 2.200170 GATGCTTGCCGGCGAAGTTT 62.200 55.000 27.83 19.81 34.52 2.66
1472 1568 0.804989 GTTTTCTGCATCCCTCACGG 59.195 55.000 0.00 0.00 0.00 4.94
1609 1708 7.201367 CGGCCGTTTTTGTAAACCATTAATTAG 60.201 37.037 19.50 0.00 40.42 1.73
1610 1709 7.599621 GGCCGTTTTTGTAAACCATTAATTAGT 59.400 33.333 0.00 0.00 40.42 2.24
1611 1710 8.980610 GCCGTTTTTGTAAACCATTAATTAGTT 58.019 29.630 0.00 0.00 40.42 2.24
1613 1712 9.786224 CGTTTTTGTAAACCATTAATTAGTTGC 57.214 29.630 2.21 0.92 40.42 4.17
1632 1731 1.599047 CGCCTGGAATCTCTGTGGT 59.401 57.895 0.00 0.00 0.00 4.16
1653 1759 3.861689 GTGCGTATGACTAAACCTACCAC 59.138 47.826 0.00 0.00 0.00 4.16
1657 1763 5.277974 GCGTATGACTAAACCTACCACGATA 60.278 44.000 0.00 0.00 0.00 2.92
1658 1764 6.728200 CGTATGACTAAACCTACCACGATAA 58.272 40.000 0.00 0.00 0.00 1.75
1660 1766 5.329035 TGACTAAACCTACCACGATAACC 57.671 43.478 0.00 0.00 0.00 2.85
1661 1767 4.771577 TGACTAAACCTACCACGATAACCA 59.228 41.667 0.00 0.00 0.00 3.67
1662 1768 5.422970 TGACTAAACCTACCACGATAACCAT 59.577 40.000 0.00 0.00 0.00 3.55
1663 1769 6.070653 TGACTAAACCTACCACGATAACCATT 60.071 38.462 0.00 0.00 0.00 3.16
1664 1770 6.714278 ACTAAACCTACCACGATAACCATTT 58.286 36.000 0.00 0.00 0.00 2.32
1665 1771 7.850193 ACTAAACCTACCACGATAACCATTTA 58.150 34.615 0.00 0.00 0.00 1.40
1666 1772 8.488668 ACTAAACCTACCACGATAACCATTTAT 58.511 33.333 0.00 0.00 0.00 1.40
1667 1773 7.562454 AAACCTACCACGATAACCATTTATG 57.438 36.000 0.00 0.00 0.00 1.90
1684 1790 7.085746 CCATTTATGCATTTATGATTCGCTCA 58.914 34.615 17.57 0.00 38.53 4.26
1745 1854 7.120138 TCCAATTTCGAATCTTTGGGTTACTAC 59.880 37.037 23.76 0.00 39.27 2.73
1789 1899 0.248289 GGCCCTTGCAGACGTTACTA 59.752 55.000 0.00 0.00 40.13 1.82
1792 1902 3.381949 GCCCTTGCAGACGTTACTATAG 58.618 50.000 0.00 0.00 37.47 1.31
1796 1906 4.733887 CCTTGCAGACGTTACTATAGTTCG 59.266 45.833 11.40 17.38 0.00 3.95
1797 1907 4.952262 TGCAGACGTTACTATAGTTCGT 57.048 40.909 24.96 24.96 38.95 3.85
1798 1908 5.300969 TGCAGACGTTACTATAGTTCGTT 57.699 39.130 25.25 16.93 37.45 3.85
1799 1909 5.702865 TGCAGACGTTACTATAGTTCGTTT 58.297 37.500 25.25 20.33 37.45 3.60
1800 1910 6.151691 TGCAGACGTTACTATAGTTCGTTTT 58.848 36.000 25.25 18.01 37.45 2.43
1801 1911 6.088483 TGCAGACGTTACTATAGTTCGTTTTG 59.912 38.462 25.25 24.44 37.45 2.44
1802 1912 6.456026 CAGACGTTACTATAGTTCGTTTTGC 58.544 40.000 25.25 17.15 37.45 3.68
1803 1913 5.284660 AGACGTTACTATAGTTCGTTTTGCG 59.715 40.000 25.25 15.08 37.45 4.85
1804 1914 4.201523 ACGTTACTATAGTTCGTTTTGCGC 60.202 41.667 21.58 0.00 41.07 6.09
1805 1915 4.250588 GTTACTATAGTTCGTTTTGCGCG 58.749 43.478 11.40 0.00 41.07 6.86
1806 1916 2.331194 ACTATAGTTCGTTTTGCGCGT 58.669 42.857 8.43 0.00 41.07 6.01
1807 1917 2.733026 ACTATAGTTCGTTTTGCGCGTT 59.267 40.909 8.43 0.00 41.07 4.84
1820 1930 1.463056 TGCGCGTTCAACTATTTCCTG 59.537 47.619 8.43 0.00 0.00 3.86
1821 1931 1.463444 GCGCGTTCAACTATTTCCTGT 59.537 47.619 8.43 0.00 0.00 4.00
1960 2075 3.069872 GGGCAATTCATTCATGGTGCATA 59.930 43.478 0.00 0.00 34.43 3.14
1979 2094 5.636965 TGCATATCCACAATTTTTGGAAACG 59.363 36.000 8.30 1.80 46.37 3.60
2003 2118 3.880047 ACTACTGCAAAGTATACCGCA 57.120 42.857 10.70 10.70 0.00 5.69
2018 2133 3.398920 GCATAGACGCGCACACAT 58.601 55.556 5.73 0.00 0.00 3.21
2087 2207 5.388475 CGTGGAGTTTGAAGATTTGTAGTCG 60.388 44.000 0.00 0.00 0.00 4.18
2157 2404 9.490379 AATAAATACTAGTAATCCTCTTTGGCG 57.510 33.333 6.70 0.00 35.26 5.69
2164 2411 4.523173 AGTAATCCTCTTTGGCGATCGATA 59.477 41.667 21.57 3.07 35.26 2.92
2205 2452 5.160641 CAGTTTACAAAACAGGCGCATATT 58.839 37.500 10.83 0.00 0.00 1.28
2206 2453 5.060816 CAGTTTACAAAACAGGCGCATATTG 59.939 40.000 10.83 11.15 0.00 1.90
2209 2456 2.176369 CAAAACAGGCGCATATTGTCG 58.824 47.619 10.83 0.00 0.00 4.35
2264 2512 0.698238 ATGGACCAACTTGCTGGCTA 59.302 50.000 0.00 0.00 40.45 3.93
2301 2549 2.038557 ACTCCAACGCAACCTGACTTAT 59.961 45.455 0.00 0.00 0.00 1.73
2328 2576 5.584649 CAGATAATCCACAGCCGTAGAAAAA 59.415 40.000 0.00 0.00 0.00 1.94
2332 2580 1.544759 CCACAGCCGTAGAAAAACCCT 60.545 52.381 0.00 0.00 0.00 4.34
2574 2925 8.402798 TGCGGTTAAATTGGATAATATGACAT 57.597 30.769 0.00 0.00 0.00 3.06
2635 2986 5.713792 TCATAAATTTTTCGGGCAGACAA 57.286 34.783 0.00 0.00 0.00 3.18
2747 3098 3.520721 GGCCTTAAACCTTACTACCTCCA 59.479 47.826 0.00 0.00 0.00 3.86
2761 3112 3.669939 ACCTCCATCCTGGTTTATTGG 57.330 47.619 0.00 0.00 39.03 3.16
2777 3128 7.733501 TGGTTTATTGGTCCCCTTTGTAATTTA 59.266 33.333 0.00 0.00 0.00 1.40
2780 3131 5.669164 TTGGTCCCCTTTGTAATTTATGC 57.331 39.130 0.00 0.00 0.00 3.14
2790 3141 8.450180 CCCTTTGTAATTTATGCCAATTTTGAC 58.550 33.333 0.00 0.00 0.00 3.18
2803 3154 8.329203 TGCCAATTTTGACCAAATATTTAACC 57.671 30.769 0.00 0.00 33.60 2.85
2813 3164 8.778358 TGACCAAATATTTAACCAACAAAATGC 58.222 29.630 0.00 0.00 0.00 3.56
3024 3380 5.885230 ATATGTTTGTGTGATGTGGAGTG 57.115 39.130 0.00 0.00 0.00 3.51
3081 3456 6.540189 AGACAAGTTGATTCGGGATATTTCAG 59.460 38.462 10.54 0.00 0.00 3.02
3082 3457 5.066505 ACAAGTTGATTCGGGATATTTCAGC 59.933 40.000 10.54 0.00 0.00 4.26
3083 3458 4.780815 AGTTGATTCGGGATATTTCAGCA 58.219 39.130 0.00 0.00 0.00 4.41
3084 3459 4.576463 AGTTGATTCGGGATATTTCAGCAC 59.424 41.667 0.00 0.00 0.00 4.40
3085 3460 4.422073 TGATTCGGGATATTTCAGCACT 57.578 40.909 0.00 0.00 0.00 4.40
3086 3461 5.545063 TGATTCGGGATATTTCAGCACTA 57.455 39.130 0.00 0.00 0.00 2.74
3087 3462 5.541845 TGATTCGGGATATTTCAGCACTAG 58.458 41.667 0.00 0.00 0.00 2.57
3088 3463 3.386768 TCGGGATATTTCAGCACTAGC 57.613 47.619 0.00 0.00 42.56 3.42
3108 3483 2.161030 CTAGCCCGGTGGTAGTATCTC 58.839 57.143 16.51 0.00 39.67 2.75
3112 3487 1.618487 CCGGTGGTAGTATCTCTCCC 58.382 60.000 0.00 0.00 0.00 4.30
3168 3547 5.305585 TCAGTTGGTGTTCTCTCCATAAAC 58.694 41.667 0.00 0.00 37.13 2.01
3369 3750 0.978151 TGGTTGGCCGTAGCTTTCTA 59.022 50.000 0.00 0.00 39.73 2.10
3374 3755 0.035036 GGCCGTAGCTTTCTATCCCC 59.965 60.000 0.00 0.00 39.73 4.81
3380 3761 3.757493 CGTAGCTTTCTATCCCCGTAGAT 59.243 47.826 0.00 0.00 31.19 1.98
3451 3835 1.946650 CGATCGCCGAAAGCTCTCC 60.947 63.158 0.26 0.00 41.76 3.71
3466 3850 2.295070 GCTCTCCGATCTCCTTACCTTC 59.705 54.545 0.00 0.00 0.00 3.46
3469 3853 2.291190 CTCCGATCTCCTTACCTTCGTC 59.709 54.545 0.00 0.00 0.00 4.20
3539 3924 2.025727 GTACGGGTCGATGGCTCG 59.974 66.667 0.00 0.00 46.41 5.03
3560 3945 3.714391 GGACACGTACTTTCTGAAGTGT 58.286 45.455 10.87 10.87 45.46 3.55
3574 3959 9.694520 CTTTCTGAAGTGTATACATGAATTTCG 57.305 33.333 9.18 5.96 0.00 3.46
3577 3962 8.038351 TCTGAAGTGTATACATGAATTTCGGAA 58.962 33.333 9.18 0.00 0.00 4.30
3589 3974 5.992729 TGAATTTCGGAAAACTCGTTTAGG 58.007 37.500 7.33 0.00 31.63 2.69
3605 4017 4.670735 CGTTTAGGGCTTTATTGGAACACG 60.671 45.833 0.00 0.00 39.29 4.49
3611 4023 4.412207 GGCTTTATTGGAACACGTGAATC 58.588 43.478 25.01 18.84 39.29 2.52
3618 4030 2.890945 TGGAACACGTGAATCTGAGAGA 59.109 45.455 25.01 0.00 0.00 3.10
3627 4039 7.116948 ACACGTGAATCTGAGAGATTTTTGTAG 59.883 37.037 25.01 0.00 44.41 2.74
3634 4046 8.744568 ATCTGAGAGATTTTTGTAGGAATTCC 57.255 34.615 17.31 17.31 28.69 3.01
3640 4052 7.499232 AGAGATTTTTGTAGGAATTCCATACCG 59.501 37.037 26.22 0.00 38.89 4.02
3642 4054 7.998964 AGATTTTTGTAGGAATTCCATACCGAT 59.001 33.333 26.22 11.25 38.89 4.18
3682 4100 4.100498 AGAAAGGGAGAGAAACACAACGTA 59.900 41.667 0.00 0.00 0.00 3.57
3689 4107 6.867293 GGGAGAGAAACACAACGTATATATCC 59.133 42.308 0.00 0.00 0.00 2.59
3709 4176 5.310409 TCCTTTGACATCTTCCTTTGACT 57.690 39.130 0.00 0.00 0.00 3.41
3710 4177 5.065914 TCCTTTGACATCTTCCTTTGACTG 58.934 41.667 0.00 0.00 0.00 3.51
3738 4205 3.119209 TCACAGCTCATTTTTGTTGTGCA 60.119 39.130 0.00 0.00 36.70 4.57
3742 4209 5.354792 ACAGCTCATTTTTGTTGTGCATTTT 59.645 32.000 0.00 0.00 36.36 1.82
3761 4230 1.205055 TTGTGTGTGTACCACCAGGA 58.795 50.000 10.70 0.00 43.85 3.86
4004 4473 1.561076 TCCTACCTAGGTACGTGCTCA 59.439 52.381 18.10 0.00 44.02 4.26
4014 4483 1.731709 GTACGTGCTCATCACATTGCA 59.268 47.619 0.00 0.00 45.92 4.08
4031 4500 1.237285 GCAAGCTCTTTCCGGCTGAA 61.237 55.000 0.00 0.00 38.91 3.02
4081 4554 4.429522 TGCATGCAGGCGGATGGT 62.430 61.111 18.46 0.00 41.06 3.55
4199 4672 3.007831 TGGAAGCCCATTTTCATTTCACC 59.992 43.478 0.00 0.00 37.58 4.02
4201 4674 3.967332 AGCCCATTTTCATTTCACCTG 57.033 42.857 0.00 0.00 0.00 4.00
4220 4694 1.841919 TGACCTGGACATGCATGATCT 59.158 47.619 32.75 11.11 0.00 2.75
4222 4696 3.181462 TGACCTGGACATGCATGATCTAC 60.181 47.826 32.75 12.33 0.00 2.59
4261 4747 1.605712 GCAGTAAGGTCTGAGCGTGTT 60.606 52.381 5.56 0.00 37.61 3.32
4405 4892 0.476338 TGCCCAACTTCCACAAGCTA 59.524 50.000 0.00 0.00 32.09 3.32
4489 4976 2.898738 CTGGCGCAGACCATCTCT 59.101 61.111 10.83 0.00 39.54 3.10
4641 5128 7.442969 CCTCATCGAGATCCAGGTACTATATAC 59.557 44.444 0.00 0.00 36.02 1.47
4642 5129 8.091952 TCATCGAGATCCAGGTACTATATACT 57.908 38.462 0.00 0.00 36.02 2.12
4643 5130 9.210228 TCATCGAGATCCAGGTACTATATACTA 57.790 37.037 0.00 0.00 36.02 1.82
5427 5962 5.250235 TCATCTTTCTCGCCTTGTAGTAG 57.750 43.478 0.00 0.00 0.00 2.57
5429 5964 4.436242 TCTTTCTCGCCTTGTAGTAGTG 57.564 45.455 0.00 0.00 0.00 2.74
5432 5967 2.522185 TCTCGCCTTGTAGTAGTGGTT 58.478 47.619 0.00 0.00 0.00 3.67
5515 6052 1.134729 TCAGTGAATGATGCAGCGCTA 60.135 47.619 10.99 0.00 31.12 4.26
5520 6057 1.389445 GAATGATGCAGCGCTATCTCG 59.611 52.381 10.99 0.00 0.00 4.04
5542 6079 2.866762 CCAGTAAACGATGGCTTAGAGC 59.133 50.000 0.00 0.00 41.46 4.09
5543 6080 3.521560 CAGTAAACGATGGCTTAGAGCA 58.478 45.455 2.04 0.00 44.75 4.26
5544 6081 4.122776 CAGTAAACGATGGCTTAGAGCAT 58.877 43.478 2.04 0.00 44.75 3.79
5545 6082 4.210120 CAGTAAACGATGGCTTAGAGCATC 59.790 45.833 2.04 0.00 44.75 3.91
5556 6093 4.094684 GAGCATCTCCAACGTCCG 57.905 61.111 0.00 0.00 0.00 4.79
5557 6094 2.125512 AGCATCTCCAACGTCCGC 60.126 61.111 0.00 0.00 0.00 5.54
5558 6095 2.434185 GCATCTCCAACGTCCGCA 60.434 61.111 0.00 0.00 0.00 5.69
5559 6096 2.740714 GCATCTCCAACGTCCGCAC 61.741 63.158 0.00 0.00 0.00 5.34
5560 6097 1.374125 CATCTCCAACGTCCGCACA 60.374 57.895 0.00 0.00 0.00 4.57
5561 6098 0.948623 CATCTCCAACGTCCGCACAA 60.949 55.000 0.00 0.00 0.00 3.33
5562 6099 0.250124 ATCTCCAACGTCCGCACAAA 60.250 50.000 0.00 0.00 0.00 2.83
5563 6100 0.462225 TCTCCAACGTCCGCACAAAA 60.462 50.000 0.00 0.00 0.00 2.44
5564 6101 0.378962 CTCCAACGTCCGCACAAAAA 59.621 50.000 0.00 0.00 0.00 1.94
5565 6102 1.001815 CTCCAACGTCCGCACAAAAAT 60.002 47.619 0.00 0.00 0.00 1.82
5566 6103 1.405821 TCCAACGTCCGCACAAAAATT 59.594 42.857 0.00 0.00 0.00 1.82
5567 6104 1.784283 CCAACGTCCGCACAAAAATTC 59.216 47.619 0.00 0.00 0.00 2.17
5568 6105 2.455032 CAACGTCCGCACAAAAATTCA 58.545 42.857 0.00 0.00 0.00 2.57
5569 6106 2.113910 ACGTCCGCACAAAAATTCAC 57.886 45.000 0.00 0.00 0.00 3.18
5570 6107 1.041726 CGTCCGCACAAAAATTCACG 58.958 50.000 0.00 0.00 0.00 4.35
5571 6108 0.775861 GTCCGCACAAAAATTCACGC 59.224 50.000 0.00 0.00 0.00 5.34
5572 6109 0.665835 TCCGCACAAAAATTCACGCT 59.334 45.000 0.00 0.00 0.00 5.07
5573 6110 1.052287 CCGCACAAAAATTCACGCTC 58.948 50.000 0.00 0.00 0.00 5.03
5574 6111 1.599171 CCGCACAAAAATTCACGCTCA 60.599 47.619 0.00 0.00 0.00 4.26
5575 6112 2.115595 CGCACAAAAATTCACGCTCAA 58.884 42.857 0.00 0.00 0.00 3.02
5576 6113 2.725723 CGCACAAAAATTCACGCTCAAT 59.274 40.909 0.00 0.00 0.00 2.57
5577 6114 3.911365 CGCACAAAAATTCACGCTCAATA 59.089 39.130 0.00 0.00 0.00 1.90
5578 6115 4.381270 CGCACAAAAATTCACGCTCAATAA 59.619 37.500 0.00 0.00 0.00 1.40
5579 6116 5.108065 CGCACAAAAATTCACGCTCAATAAA 60.108 36.000 0.00 0.00 0.00 1.40
5580 6117 6.561166 CGCACAAAAATTCACGCTCAATAAAA 60.561 34.615 0.00 0.00 0.00 1.52
5581 6118 7.122550 GCACAAAAATTCACGCTCAATAAAAA 58.877 30.769 0.00 0.00 0.00 1.94
5582 6119 7.798052 GCACAAAAATTCACGCTCAATAAAAAT 59.202 29.630 0.00 0.00 0.00 1.82
5583 6120 9.649024 CACAAAAATTCACGCTCAATAAAAATT 57.351 25.926 0.00 0.00 0.00 1.82
5591 6128 5.634156 CGCTCAATAAAAATTATAGCGCG 57.366 39.130 0.00 0.00 43.78 6.86
5592 6129 4.027991 CGCTCAATAAAAATTATAGCGCGC 59.972 41.667 26.66 26.66 43.78 6.86
5593 6130 4.320953 GCTCAATAAAAATTATAGCGCGCC 59.679 41.667 30.33 10.31 0.00 6.53
5594 6131 5.425577 TCAATAAAAATTATAGCGCGCCA 57.574 34.783 30.33 16.82 0.00 5.69
5595 6132 6.007936 TCAATAAAAATTATAGCGCGCCAT 57.992 33.333 30.33 23.70 0.00 4.40
5596 6133 6.442952 TCAATAAAAATTATAGCGCGCCATT 58.557 32.000 30.33 17.83 0.00 3.16
5597 6134 6.920758 TCAATAAAAATTATAGCGCGCCATTT 59.079 30.769 30.33 22.38 0.00 2.32
5598 6135 7.436673 TCAATAAAAATTATAGCGCGCCATTTT 59.563 29.630 30.33 26.23 0.00 1.82
5599 6136 8.695284 CAATAAAAATTATAGCGCGCCATTTTA 58.305 29.630 30.33 25.34 0.00 1.52
5600 6137 6.747659 AAAAATTATAGCGCGCCATTTTAG 57.252 33.333 30.33 0.00 0.00 1.85
5601 6138 2.961522 TTATAGCGCGCCATTTTAGC 57.038 45.000 30.33 0.00 0.00 3.09
5602 6139 1.872388 TATAGCGCGCCATTTTAGCA 58.128 45.000 30.33 0.00 0.00 3.49
5603 6140 1.238439 ATAGCGCGCCATTTTAGCAT 58.762 45.000 30.33 7.53 0.00 3.79
5604 6141 1.021202 TAGCGCGCCATTTTAGCATT 58.979 45.000 30.33 6.92 0.00 3.56
5605 6142 0.173255 AGCGCGCCATTTTAGCATTT 59.827 45.000 30.33 0.00 0.00 2.32
5606 6143 0.998669 GCGCGCCATTTTAGCATTTT 59.001 45.000 23.24 0.00 0.00 1.82
5607 6144 1.393196 GCGCGCCATTTTAGCATTTTT 59.607 42.857 23.24 0.00 0.00 1.94
5608 6145 2.600867 GCGCGCCATTTTAGCATTTTTA 59.399 40.909 23.24 0.00 0.00 1.52
5609 6146 3.061429 GCGCGCCATTTTAGCATTTTTAA 59.939 39.130 23.24 0.00 0.00 1.52
5610 6147 4.260172 GCGCGCCATTTTAGCATTTTTAAT 60.260 37.500 23.24 0.00 0.00 1.40
5611 6148 5.189625 CGCGCCATTTTAGCATTTTTAATG 58.810 37.500 0.00 0.00 0.00 1.90
5612 6149 4.963352 GCGCCATTTTAGCATTTTTAATGC 59.037 37.500 14.78 14.78 44.85 3.56
5618 6155 2.296658 GCATTTTTAATGCGCCGGG 58.703 52.632 4.18 0.00 35.17 5.73
5619 6156 0.179124 GCATTTTTAATGCGCCGGGA 60.179 50.000 4.18 0.00 35.17 5.14
5620 6157 1.537990 GCATTTTTAATGCGCCGGGAT 60.538 47.619 4.18 0.00 35.17 3.85
5621 6158 2.393764 CATTTTTAATGCGCCGGGATC 58.606 47.619 4.18 0.00 0.00 3.36
5622 6159 1.464734 TTTTTAATGCGCCGGGATCA 58.535 45.000 4.18 0.00 0.00 2.92
5623 6160 1.464734 TTTTAATGCGCCGGGATCAA 58.535 45.000 4.18 0.00 0.00 2.57
5624 6161 0.736053 TTTAATGCGCCGGGATCAAC 59.264 50.000 4.18 0.00 0.00 3.18
5625 6162 0.393132 TTAATGCGCCGGGATCAACA 60.393 50.000 4.18 0.00 0.00 3.33
5626 6163 0.179032 TAATGCGCCGGGATCAACAT 60.179 50.000 4.18 0.00 0.00 2.71
5627 6164 1.447317 AATGCGCCGGGATCAACATC 61.447 55.000 4.18 0.00 0.00 3.06
5628 6165 3.640000 GCGCCGGGATCAACATCG 61.640 66.667 2.18 0.00 0.00 3.84
5629 6166 3.640000 CGCCGGGATCAACATCGC 61.640 66.667 2.18 0.00 38.37 4.58
5630 6167 2.203070 GCCGGGATCAACATCGCT 60.203 61.111 2.18 0.00 39.36 4.93
5631 6168 1.819632 GCCGGGATCAACATCGCTT 60.820 57.895 2.18 0.00 39.36 4.68
5632 6169 1.376609 GCCGGGATCAACATCGCTTT 61.377 55.000 2.18 0.00 39.36 3.51
5633 6170 1.948104 CCGGGATCAACATCGCTTTA 58.052 50.000 0.00 0.00 39.36 1.85
5634 6171 1.867233 CCGGGATCAACATCGCTTTAG 59.133 52.381 0.00 0.00 39.36 1.85
5635 6172 1.261619 CGGGATCAACATCGCTTTAGC 59.738 52.381 0.00 0.00 39.36 3.09
5636 6173 2.288666 GGGATCAACATCGCTTTAGCA 58.711 47.619 2.29 0.00 42.21 3.49
5637 6174 2.289002 GGGATCAACATCGCTTTAGCAG 59.711 50.000 2.29 0.00 42.21 4.24
5638 6175 3.198068 GGATCAACATCGCTTTAGCAGA 58.802 45.455 2.29 1.15 42.21 4.26
5639 6176 3.001736 GGATCAACATCGCTTTAGCAGAC 59.998 47.826 2.29 0.00 42.21 3.51
5640 6177 1.992667 TCAACATCGCTTTAGCAGACG 59.007 47.619 2.29 0.00 42.21 4.18
5641 6178 0.721718 AACATCGCTTTAGCAGACGC 59.278 50.000 2.29 0.00 42.21 5.19
5642 6179 1.084370 ACATCGCTTTAGCAGACGCC 61.084 55.000 2.29 0.00 42.21 5.68
5643 6180 1.521681 ATCGCTTTAGCAGACGCCC 60.522 57.895 2.29 0.00 42.21 6.13
5644 6181 2.238847 ATCGCTTTAGCAGACGCCCA 62.239 55.000 2.29 0.00 42.21 5.36
5645 6182 2.032634 CGCTTTAGCAGACGCCCAA 61.033 57.895 2.29 0.00 42.21 4.12
5646 6183 1.573829 CGCTTTAGCAGACGCCCAAA 61.574 55.000 2.29 0.00 42.21 3.28
5647 6184 0.596082 GCTTTAGCAGACGCCCAAAA 59.404 50.000 0.00 0.00 41.59 2.44
5648 6185 1.000717 GCTTTAGCAGACGCCCAAAAA 60.001 47.619 0.00 0.00 41.59 1.94
5649 6186 2.661594 CTTTAGCAGACGCCCAAAAAC 58.338 47.619 0.00 0.00 39.83 2.43
5779 6320 0.238289 CCGCGTCAAAATTGAGCACT 59.762 50.000 4.92 0.00 37.98 4.40
5780 6321 1.463056 CCGCGTCAAAATTGAGCACTA 59.537 47.619 4.92 0.00 37.98 2.74
5998 6558 3.126073 CGTCGTCACCATCATCATCATT 58.874 45.455 0.00 0.00 0.00 2.57
6029 6589 0.333652 TGGTCTGGTCCGAGGTATCA 59.666 55.000 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 243 8.972262 AGCATTGATATATACGAGTACAACTG 57.028 34.615 0.00 0.00 0.00 3.16
280 282 4.627611 ATTGTATGAACACATCAGCAGC 57.372 40.909 0.00 0.00 42.53 5.25
283 285 6.968904 CCTTTGTATTGTATGAACACATCAGC 59.031 38.462 0.00 0.00 42.53 4.26
373 375 2.148768 CAAACGTGTTCCTAAGGGGAC 58.851 52.381 0.00 0.00 45.03 4.46
381 387 4.443034 GGCTCCTATATCAAACGTGTTCCT 60.443 45.833 0.00 0.00 0.00 3.36
383 389 4.439057 TGGCTCCTATATCAAACGTGTTC 58.561 43.478 0.00 0.00 0.00 3.18
398 404 3.136443 TCCATGACGATTAAATGGCTCCT 59.864 43.478 0.00 0.00 40.62 3.69
413 419 8.457261 GCATCCATATCTAAGAAAATCCATGAC 58.543 37.037 0.00 0.00 0.00 3.06
415 421 7.147949 GGGCATCCATATCTAAGAAAATCCATG 60.148 40.741 0.00 0.00 0.00 3.66
446 452 4.775295 CGGTTCCCGTACAAACCA 57.225 55.556 17.28 0.00 44.25 3.67
525 534 6.294899 CGGGGATAATAACCTGATACGAAAGA 60.295 42.308 0.00 0.00 35.02 2.52
531 540 4.546829 TGCGGGGATAATAACCTGATAC 57.453 45.455 0.00 0.00 35.02 2.24
535 544 4.993029 TTTTTGCGGGGATAATAACCTG 57.007 40.909 0.00 0.00 36.18 4.00
569 578 1.270907 CACCAGTGGCTACCTCTCTT 58.729 55.000 9.78 0.00 0.00 2.85
575 584 1.553248 TGTATGACACCAGTGGCTACC 59.447 52.381 9.78 0.00 39.96 3.18
576 585 3.118775 TCATGTATGACACCAGTGGCTAC 60.119 47.826 9.78 5.88 39.96 3.58
608 617 0.250424 GAGAAACGGGGGAACGGAAA 60.250 55.000 0.00 0.00 38.39 3.13
634 643 3.890147 GGTCTCAGTATATTCAGTCCGGT 59.110 47.826 0.00 0.00 0.00 5.28
791 802 1.610673 AGCTTTGCTCCTCCTCCGA 60.611 57.895 0.00 0.00 30.62 4.55
884 900 4.036734 CCTCTCTCTCTACAAGTGATCTGC 59.963 50.000 0.00 0.00 0.00 4.26
917 943 1.152830 GATCTCCTCCTCGGCCTCT 59.847 63.158 0.00 0.00 0.00 3.69
988 1025 4.176752 GTCCATGGCCCCGACTCC 62.177 72.222 6.96 0.00 0.00 3.85
989 1026 4.530857 CGTCCATGGCCCCGACTC 62.531 72.222 6.96 0.00 0.00 3.36
991 1028 4.832608 GACGTCCATGGCCCCGAC 62.833 72.222 20.41 12.93 0.00 4.79
1065 1108 1.068741 GGATGGATGGACGTACCTGTC 59.931 57.143 0.00 0.00 39.86 3.51
1078 1121 4.508047 GCAAGAATGGTAGGATGGATGGAT 60.508 45.833 0.00 0.00 0.00 3.41
1082 1125 4.803329 AAGCAAGAATGGTAGGATGGAT 57.197 40.909 0.00 0.00 35.91 3.41
1169 1225 1.996798 TGGTAAAAATCCAACCGCCA 58.003 45.000 0.00 0.00 35.98 5.69
1205 1261 2.427506 CTCGGTTTCCCCTTTCTTCAG 58.572 52.381 0.00 0.00 0.00 3.02
1206 1262 1.073284 CCTCGGTTTCCCCTTTCTTCA 59.927 52.381 0.00 0.00 0.00 3.02
1211 1267 2.439245 GGCCTCGGTTTCCCCTTT 59.561 61.111 0.00 0.00 0.00 3.11
1415 1487 1.414061 AAGGAGATGGCCTATGCGCT 61.414 55.000 9.73 0.00 37.26 5.92
1432 1506 2.182537 GCCGGCAAGCATCCAAAG 59.817 61.111 24.80 0.00 0.00 2.77
1532 1631 2.433838 CAGCAGCTGTGAGGGACG 60.434 66.667 16.64 0.00 0.00 4.79
1533 1632 2.745492 GCAGCAGCTGTGAGGGAC 60.745 66.667 23.60 1.10 37.91 4.46
1609 1708 1.078143 AGAGATTCCAGGCGGCAAC 60.078 57.895 13.08 0.00 0.00 4.17
1610 1709 1.078214 CAGAGATTCCAGGCGGCAA 60.078 57.895 13.08 0.00 0.00 4.52
1611 1710 2.293318 ACAGAGATTCCAGGCGGCA 61.293 57.895 13.08 0.00 0.00 5.69
1612 1711 1.817099 CACAGAGATTCCAGGCGGC 60.817 63.158 0.00 0.00 0.00 6.53
1613 1712 1.153289 CCACAGAGATTCCAGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
1632 1731 3.427909 CGTGGTAGGTTTAGTCATACGCA 60.428 47.826 0.00 0.00 0.00 5.24
1657 1763 7.436118 AGCGAATCATAAATGCATAAATGGTT 58.564 30.769 15.85 15.85 0.00 3.67
1658 1764 6.985117 AGCGAATCATAAATGCATAAATGGT 58.015 32.000 16.88 10.15 0.00 3.55
1660 1766 8.019094 TCTGAGCGAATCATAAATGCATAAATG 58.981 33.333 0.00 7.24 37.28 2.32
1661 1767 8.102800 TCTGAGCGAATCATAAATGCATAAAT 57.897 30.769 0.00 0.00 37.28 1.40
1662 1768 7.495135 TCTGAGCGAATCATAAATGCATAAA 57.505 32.000 0.00 0.00 37.28 1.40
1663 1769 7.148356 GGATCTGAGCGAATCATAAATGCATAA 60.148 37.037 0.00 0.00 37.28 1.90
1664 1770 6.314648 GGATCTGAGCGAATCATAAATGCATA 59.685 38.462 0.00 0.00 37.28 3.14
1665 1771 5.123502 GGATCTGAGCGAATCATAAATGCAT 59.876 40.000 0.00 0.00 37.28 3.96
1666 1772 4.453478 GGATCTGAGCGAATCATAAATGCA 59.547 41.667 0.00 0.00 37.28 3.96
1667 1773 4.142730 GGGATCTGAGCGAATCATAAATGC 60.143 45.833 0.00 0.00 37.28 3.56
1684 1790 1.827969 GCGTATATCTGGCTGGGATCT 59.172 52.381 0.00 0.00 0.00 2.75
1745 1854 3.814268 CGATTGCCAACCCAGCGG 61.814 66.667 0.00 0.00 0.00 5.52
1796 1906 3.118972 GGAAATAGTTGAACGCGCAAAAC 59.881 43.478 5.73 8.24 0.00 2.43
1797 1907 3.003897 AGGAAATAGTTGAACGCGCAAAA 59.996 39.130 5.73 0.00 0.00 2.44
1798 1908 2.550606 AGGAAATAGTTGAACGCGCAAA 59.449 40.909 5.73 0.00 0.00 3.68
1799 1909 2.095969 CAGGAAATAGTTGAACGCGCAA 60.096 45.455 5.73 0.00 0.00 4.85
1800 1910 1.463056 CAGGAAATAGTTGAACGCGCA 59.537 47.619 5.73 0.00 0.00 6.09
1801 1911 1.463444 ACAGGAAATAGTTGAACGCGC 59.537 47.619 5.73 0.00 0.00 6.86
1802 1912 4.804139 AGATACAGGAAATAGTTGAACGCG 59.196 41.667 3.53 3.53 0.00 6.01
1803 1913 5.581085 ACAGATACAGGAAATAGTTGAACGC 59.419 40.000 0.00 0.00 0.00 4.84
1804 1914 7.596749 AACAGATACAGGAAATAGTTGAACG 57.403 36.000 0.00 0.00 0.00 3.95
1805 1915 9.612620 CAAAACAGATACAGGAAATAGTTGAAC 57.387 33.333 0.00 0.00 0.00 3.18
1806 1916 8.296713 GCAAAACAGATACAGGAAATAGTTGAA 58.703 33.333 0.00 0.00 0.00 2.69
1807 1917 7.446931 TGCAAAACAGATACAGGAAATAGTTGA 59.553 33.333 0.00 0.00 0.00 3.18
1960 2075 3.181461 TGGCGTTTCCAAAAATTGTGGAT 60.181 39.130 5.61 0.00 44.62 3.41
1979 2094 3.308866 CGGTATACTTTGCAGTAGTTGGC 59.691 47.826 8.61 0.00 38.96 4.52
1985 2100 5.526115 GTCTATGCGGTATACTTTGCAGTA 58.474 41.667 18.06 11.85 41.19 2.74
2003 2118 3.398920 GCATGTGTGCGCGTCTAT 58.601 55.556 8.43 0.00 42.28 1.98
2033 2151 1.600013 ACGTTGTGTTTAGAATGCGCA 59.400 42.857 14.96 14.96 0.00 6.09
2034 2152 2.309898 ACGTTGTGTTTAGAATGCGC 57.690 45.000 0.00 0.00 0.00 6.09
2060 2178 1.156736 AATCTTCAAACTCCACGGCG 58.843 50.000 4.80 4.80 0.00 6.46
2087 2207 5.511377 CACATCCGTTAACAACACATAATGC 59.489 40.000 6.39 0.00 0.00 3.56
2139 2386 4.023107 TCGATCGCCAAAGAGGATTACTAG 60.023 45.833 11.09 0.00 41.22 2.57
2140 2387 3.887110 TCGATCGCCAAAGAGGATTACTA 59.113 43.478 11.09 0.00 41.22 1.82
2141 2388 2.693591 TCGATCGCCAAAGAGGATTACT 59.306 45.455 11.09 0.00 41.22 2.24
2157 2404 5.140747 ACTCAAATACCAGGCTATCGATC 57.859 43.478 0.00 0.00 0.00 3.69
2164 2411 3.356529 CTGGAACTCAAATACCAGGCT 57.643 47.619 0.00 0.00 44.04 4.58
2205 2452 3.620300 CTGACTTACGGCCGCGACA 62.620 63.158 28.58 18.52 0.00 4.35
2206 2453 2.879462 CTGACTTACGGCCGCGAC 60.879 66.667 28.58 14.76 0.00 5.19
2301 2549 1.831106 ACGGCTGTGGATTATCTGACA 59.169 47.619 0.00 0.00 0.00 3.58
2308 2556 4.004982 GGTTTTTCTACGGCTGTGGATTA 58.995 43.478 13.02 1.51 35.34 1.75
2328 2576 3.331889 ACCTCTCAACAATCAATGAGGGT 59.668 43.478 10.93 6.15 41.63 4.34
2332 2580 8.690203 TTTCTAAACCTCTCAACAATCAATGA 57.310 30.769 0.00 0.00 0.00 2.57
2512 2863 0.326595 TCAAAGGTGGATAGGCGCAA 59.673 50.000 10.83 0.00 0.00 4.85
2574 2925 4.837896 TTCCATTGACGTGTAATTGCAA 57.162 36.364 0.00 0.00 0.00 4.08
2613 2964 5.713792 TTGTCTGCCCGAAAAATTTATGA 57.286 34.783 0.00 0.00 0.00 2.15
2617 2968 5.423886 TCTTTTTGTCTGCCCGAAAAATTT 58.576 33.333 0.00 0.00 29.19 1.82
2625 2976 0.593128 CCACTCTTTTTGTCTGCCCG 59.407 55.000 0.00 0.00 0.00 6.13
2680 3031 5.180680 GCCTCGGAACTTGTTTGTAGTTTAT 59.819 40.000 0.00 0.00 36.04 1.40
2761 3112 5.669164 TTGGCATAAATTACAAAGGGGAC 57.331 39.130 0.00 0.00 0.00 4.46
2777 3128 8.955388 GGTTAAATATTTGGTCAAAATTGGCAT 58.045 29.630 11.05 0.00 39.29 4.40
2822 3173 9.683069 GAATCCAGCGATATAATTTTTGTTGAT 57.317 29.630 0.00 0.00 0.00 2.57
2827 3178 9.903682 AATCTGAATCCAGCGATATAATTTTTG 57.096 29.630 0.00 0.00 40.20 2.44
2830 3181 9.071276 ACAAATCTGAATCCAGCGATATAATTT 57.929 29.630 0.00 0.00 40.20 1.82
2836 3187 5.427378 TGAACAAATCTGAATCCAGCGATA 58.573 37.500 0.00 0.00 40.20 2.92
2841 3192 8.954350 AGAAACTATGAACAAATCTGAATCCAG 58.046 33.333 0.00 0.00 41.74 3.86
2947 3298 1.272258 CCCCGTCCTGGTTTATTGGTT 60.272 52.381 0.00 0.00 35.15 3.67
3024 3380 0.178961 AAGCCTCCCAAAACCTCCAC 60.179 55.000 0.00 0.00 0.00 4.02
3081 3456 2.107141 CACCGGGCTAGCTAGTGC 59.893 66.667 21.62 9.45 40.05 4.40
3082 3457 0.754217 TACCACCGGGCTAGCTAGTG 60.754 60.000 21.62 17.85 37.90 2.74
3083 3458 0.467659 CTACCACCGGGCTAGCTAGT 60.468 60.000 21.62 6.84 37.90 2.57
3084 3459 0.467659 ACTACCACCGGGCTAGCTAG 60.468 60.000 16.84 16.84 37.90 3.42
3085 3460 0.846015 TACTACCACCGGGCTAGCTA 59.154 55.000 15.72 0.00 37.90 3.32
3086 3461 0.187851 ATACTACCACCGGGCTAGCT 59.812 55.000 15.72 0.00 37.90 3.32
3087 3462 0.602060 GATACTACCACCGGGCTAGC 59.398 60.000 6.04 6.04 37.90 3.42
3088 3463 2.161030 GAGATACTACCACCGGGCTAG 58.839 57.143 6.32 3.46 37.90 3.42
3089 3464 1.779092 AGAGATACTACCACCGGGCTA 59.221 52.381 6.32 0.00 37.90 3.93
3090 3465 0.556747 AGAGATACTACCACCGGGCT 59.443 55.000 6.32 0.00 37.90 5.19
3108 3483 1.821258 GCTACGTTGGTAGGGGGAG 59.179 63.158 0.00 0.00 45.15 4.30
3168 3547 2.050350 TCTAGGAAGACGTGCCGGG 61.050 63.158 2.18 0.00 0.00 5.73
3325 3706 5.965334 TCGGAAAATTATGAGACGTACGTAC 59.035 40.000 22.87 18.21 0.00 3.67
3336 3717 3.383185 GGCCAACCATCGGAAAATTATGA 59.617 43.478 0.00 0.00 35.26 2.15
3337 3718 3.716601 GGCCAACCATCGGAAAATTATG 58.283 45.455 0.00 0.00 35.26 1.90
3341 3722 0.610785 ACGGCCAACCATCGGAAAAT 60.611 50.000 2.24 0.00 34.57 1.82
3369 3750 0.969894 GCACTAGCATCTACGGGGAT 59.030 55.000 0.00 0.00 41.58 3.85
3374 3755 0.459899 TGGTGGCACTAGCATCTACG 59.540 55.000 18.45 0.00 44.61 3.51
3380 3761 2.920384 TCGGTGGTGGCACTAGCA 60.920 61.111 28.42 15.34 44.61 3.49
3451 3835 2.291190 GAGGACGAAGGTAAGGAGATCG 59.709 54.545 0.00 0.00 39.30 3.69
3466 3850 0.455633 CAAACCGACGGTAGAGGACG 60.456 60.000 22.06 0.00 33.12 4.79
3469 3853 0.736325 CAGCAAACCGACGGTAGAGG 60.736 60.000 22.06 11.08 33.12 3.69
3539 3924 3.714391 ACACTTCAGAAAGTACGTGTCC 58.286 45.455 0.00 0.00 43.99 4.02
3560 3945 7.837202 ACGAGTTTTCCGAAATTCATGTATA 57.163 32.000 0.00 0.00 32.71 1.47
3574 3959 5.892160 ATAAAGCCCTAAACGAGTTTTCC 57.108 39.130 6.53 0.00 34.23 3.13
3577 3962 5.318630 TCCAATAAAGCCCTAAACGAGTTT 58.681 37.500 6.46 6.46 36.63 2.66
3589 3974 3.907894 TTCACGTGTTCCAATAAAGCC 57.092 42.857 16.51 0.00 0.00 4.35
3605 4017 8.553459 TTCCTACAAAAATCTCTCAGATTCAC 57.447 34.615 0.00 0.00 43.67 3.18
3611 4023 7.928307 TGGAATTCCTACAAAAATCTCTCAG 57.072 36.000 24.73 0.00 36.82 3.35
3618 4030 7.777910 TGATCGGTATGGAATTCCTACAAAAAT 59.222 33.333 24.73 10.75 36.82 1.82
3682 4100 9.566432 GTCAAAGGAAGATGTCAAAGGATATAT 57.434 33.333 0.00 0.00 0.00 0.86
3689 4107 5.994054 TCTCAGTCAAAGGAAGATGTCAAAG 59.006 40.000 0.00 0.00 0.00 2.77
3709 4176 6.395426 ACAAAAATGAGCTGTGAAATCTCA 57.605 33.333 0.00 0.00 40.62 3.27
3710 4177 6.698766 ACAACAAAAATGAGCTGTGAAATCTC 59.301 34.615 0.00 0.00 0.00 2.75
3761 4230 4.825252 GCCGCCGTCCATACCGTT 62.825 66.667 0.00 0.00 0.00 4.44
3947 4416 2.173382 GTGTAGTTGCGCTTGCCG 59.827 61.111 9.73 0.00 38.03 5.69
3982 4451 1.028130 GCACGTACCTAGGTAGGACC 58.972 60.000 36.55 25.18 46.63 4.46
4004 4473 2.163010 CGGAAAGAGCTTGCAATGTGAT 59.837 45.455 0.00 0.00 0.00 3.06
4014 4483 1.981256 TTTTCAGCCGGAAAGAGCTT 58.019 45.000 5.05 0.00 45.70 3.74
4036 4505 9.715121 ATCATTATTTTCAGTTTGCAATGTTCT 57.285 25.926 0.00 0.00 0.00 3.01
4040 4509 7.690637 GCACATCATTATTTTCAGTTTGCAATG 59.309 33.333 0.00 0.00 0.00 2.82
4048 4517 5.968254 TGCATGCACATCATTATTTTCAGT 58.032 33.333 18.46 0.00 31.79 3.41
4057 4526 1.435925 CGCCTGCATGCACATCATT 59.564 52.632 18.46 0.00 31.79 2.57
4081 4554 1.812686 AAGCCGCAGAACCAGACGTA 61.813 55.000 0.00 0.00 0.00 3.57
4195 4668 1.126948 TGCATGTCCAGGTCAGGTGA 61.127 55.000 0.28 0.00 0.00 4.02
4199 4672 2.158798 AGATCATGCATGTCCAGGTCAG 60.159 50.000 25.43 0.00 0.00 3.51
4201 4674 2.634815 AGATCATGCATGTCCAGGTC 57.365 50.000 25.43 14.30 0.00 3.85
4220 4694 3.688185 GCTACTACCATGATCGATCGGTA 59.312 47.826 22.97 22.97 32.81 4.02
4222 4696 2.488153 TGCTACTACCATGATCGATCGG 59.512 50.000 20.03 17.54 0.00 4.18
4234 4720 3.067040 GCTCAGACCTTACTGCTACTACC 59.933 52.174 0.00 0.00 37.75 3.18
4261 4747 1.665282 CAAGGCGCTGCATGCAAAA 60.665 52.632 22.88 0.00 43.06 2.44
4547 5034 1.086634 GTCATCCAGACCTTCTGCGC 61.087 60.000 0.00 0.00 42.98 6.09
4641 5128 8.869897 CGAGCTCAAGAGACTAGAGTTATATAG 58.130 40.741 15.40 0.00 0.00 1.31
4642 5129 8.586744 TCGAGCTCAAGAGACTAGAGTTATATA 58.413 37.037 15.40 0.00 0.00 0.86
4643 5130 7.446769 TCGAGCTCAAGAGACTAGAGTTATAT 58.553 38.462 15.40 0.00 0.00 0.86
4681 5168 5.129980 ACTCAATTCATCATCACCTGCTCTA 59.870 40.000 0.00 0.00 0.00 2.43
5427 5962 2.017049 CCTCATTCAATCCCGAACCAC 58.983 52.381 0.00 0.00 0.00 4.16
5429 5964 2.710096 TCCTCATTCAATCCCGAACC 57.290 50.000 0.00 0.00 0.00 3.62
5432 5967 5.630415 AGTTATTCCTCATTCAATCCCGA 57.370 39.130 0.00 0.00 0.00 5.14
5515 6052 2.225068 CCATCGTTTACTGGCGAGAT 57.775 50.000 1.44 0.00 40.56 2.75
5528 6065 1.342819 GGAGATGCTCTAAGCCATCGT 59.657 52.381 0.00 0.00 41.51 3.73
5540 6077 2.125512 GCGGACGTTGGAGATGCT 60.126 61.111 0.00 0.00 0.00 3.79
5541 6078 2.434185 TGCGGACGTTGGAGATGC 60.434 61.111 0.00 0.00 0.00 3.91
5542 6079 0.948623 TTGTGCGGACGTTGGAGATG 60.949 55.000 1.60 0.00 0.00 2.90
5543 6080 0.250124 TTTGTGCGGACGTTGGAGAT 60.250 50.000 1.60 0.00 0.00 2.75
5544 6081 0.462225 TTTTGTGCGGACGTTGGAGA 60.462 50.000 1.60 0.00 0.00 3.71
5545 6082 0.378962 TTTTTGTGCGGACGTTGGAG 59.621 50.000 1.60 0.00 0.00 3.86
5546 6083 1.025812 ATTTTTGTGCGGACGTTGGA 58.974 45.000 1.60 0.00 0.00 3.53
5547 6084 1.784283 GAATTTTTGTGCGGACGTTGG 59.216 47.619 1.60 0.00 0.00 3.77
5548 6085 2.215363 GTGAATTTTTGTGCGGACGTTG 59.785 45.455 1.60 0.00 0.00 4.10
5549 6086 2.456010 GTGAATTTTTGTGCGGACGTT 58.544 42.857 1.60 0.00 0.00 3.99
5550 6087 1.595976 CGTGAATTTTTGTGCGGACGT 60.596 47.619 1.60 0.00 0.00 4.34
5551 6088 1.041726 CGTGAATTTTTGTGCGGACG 58.958 50.000 1.60 0.00 0.00 4.79
5552 6089 0.775861 GCGTGAATTTTTGTGCGGAC 59.224 50.000 0.00 0.00 0.00 4.79
5553 6090 0.665835 AGCGTGAATTTTTGTGCGGA 59.334 45.000 0.00 0.00 0.00 5.54
5554 6091 1.052287 GAGCGTGAATTTTTGTGCGG 58.948 50.000 0.00 0.00 0.00 5.69
5555 6092 1.752753 TGAGCGTGAATTTTTGTGCG 58.247 45.000 0.00 0.00 0.00 5.34
5556 6093 5.820926 TTATTGAGCGTGAATTTTTGTGC 57.179 34.783 0.00 0.00 0.00 4.57
5557 6094 9.649024 AATTTTTATTGAGCGTGAATTTTTGTG 57.351 25.926 0.00 0.00 0.00 3.33
5563 6100 9.169468 CGCTATAATTTTTATTGAGCGTGAATT 57.831 29.630 12.78 0.00 39.89 2.17
5564 6101 7.323656 GCGCTATAATTTTTATTGAGCGTGAAT 59.676 33.333 18.30 0.00 43.25 2.57
5565 6102 6.631238 GCGCTATAATTTTTATTGAGCGTGAA 59.369 34.615 18.30 0.00 43.25 3.18
5566 6103 6.133392 GCGCTATAATTTTTATTGAGCGTGA 58.867 36.000 18.30 0.00 43.25 4.35
5567 6104 5.056807 CGCGCTATAATTTTTATTGAGCGTG 59.943 40.000 21.42 19.14 43.82 5.34
5568 6105 5.137403 CGCGCTATAATTTTTATTGAGCGT 58.863 37.500 21.42 0.00 43.25 5.07
5569 6106 4.027991 GCGCGCTATAATTTTTATTGAGCG 59.972 41.667 26.67 23.59 45.30 5.03
5570 6107 4.320953 GGCGCGCTATAATTTTTATTGAGC 59.679 41.667 32.29 2.98 0.00 4.26
5571 6108 5.448438 TGGCGCGCTATAATTTTTATTGAG 58.552 37.500 32.29 0.00 0.00 3.02
5572 6109 5.425577 TGGCGCGCTATAATTTTTATTGA 57.574 34.783 32.29 0.00 0.00 2.57
5573 6110 6.689178 AATGGCGCGCTATAATTTTTATTG 57.311 33.333 30.54 0.00 0.00 1.90
5574 6111 7.707774 AAAATGGCGCGCTATAATTTTTATT 57.292 28.000 30.54 15.13 28.61 1.40
5575 6112 7.061789 GCTAAAATGGCGCGCTATAATTTTTAT 59.938 33.333 31.33 20.37 33.67 1.40
5576 6113 6.361214 GCTAAAATGGCGCGCTATAATTTTTA 59.639 34.615 31.33 27.59 33.67 1.52
5577 6114 5.174943 GCTAAAATGGCGCGCTATAATTTTT 59.825 36.000 31.33 27.85 33.67 1.94
5578 6115 4.679654 GCTAAAATGGCGCGCTATAATTTT 59.320 37.500 30.54 30.30 35.32 1.82
5579 6116 4.226761 GCTAAAATGGCGCGCTATAATTT 58.773 39.130 30.54 26.75 0.00 1.82
5580 6117 3.252215 TGCTAAAATGGCGCGCTATAATT 59.748 39.130 30.54 26.79 0.00 1.40
5581 6118 2.811431 TGCTAAAATGGCGCGCTATAAT 59.189 40.909 30.54 22.64 0.00 1.28
5582 6119 2.214347 TGCTAAAATGGCGCGCTATAA 58.786 42.857 30.54 17.20 0.00 0.98
5583 6120 1.872388 TGCTAAAATGGCGCGCTATA 58.128 45.000 30.54 17.50 0.00 1.31
5584 6121 1.238439 ATGCTAAAATGGCGCGCTAT 58.762 45.000 32.29 28.79 0.00 2.97
5585 6122 1.021202 AATGCTAAAATGGCGCGCTA 58.979 45.000 32.29 27.68 0.00 4.26
5586 6123 0.173255 AAATGCTAAAATGGCGCGCT 59.827 45.000 32.29 13.63 0.00 5.92
5587 6124 0.998669 AAAATGCTAAAATGGCGCGC 59.001 45.000 25.94 25.94 0.00 6.86
5588 6125 4.831741 TTAAAAATGCTAAAATGGCGCG 57.168 36.364 0.00 0.00 0.00 6.86
5589 6126 4.963352 GCATTAAAAATGCTAAAATGGCGC 59.037 37.500 15.55 0.00 41.52 6.53
5590 6127 5.189625 CGCATTAAAAATGCTAAAATGGCG 58.810 37.500 19.22 0.00 42.50 5.69
5591 6128 4.963352 GCGCATTAAAAATGCTAAAATGGC 59.037 37.500 19.22 11.23 42.50 4.40
5592 6129 5.500825 GGCGCATTAAAAATGCTAAAATGG 58.499 37.500 19.22 6.18 42.50 3.16
5593 6130 5.189625 CGGCGCATTAAAAATGCTAAAATG 58.810 37.500 19.22 6.77 42.50 2.32
5594 6131 4.269844 CCGGCGCATTAAAAATGCTAAAAT 59.730 37.500 19.22 0.00 42.50 1.82
5595 6132 3.614616 CCGGCGCATTAAAAATGCTAAAA 59.385 39.130 19.22 0.00 42.50 1.52
5596 6133 3.182967 CCGGCGCATTAAAAATGCTAAA 58.817 40.909 19.22 0.00 42.50 1.85
5597 6134 2.480416 CCCGGCGCATTAAAAATGCTAA 60.480 45.455 19.22 0.00 42.50 3.09
5598 6135 1.066303 CCCGGCGCATTAAAAATGCTA 59.934 47.619 19.22 0.00 42.50 3.49
5599 6136 0.179113 CCCGGCGCATTAAAAATGCT 60.179 50.000 19.22 0.00 42.50 3.79
5600 6137 0.179124 TCCCGGCGCATTAAAAATGC 60.179 50.000 10.83 13.35 41.35 3.56
5601 6138 2.223688 TGATCCCGGCGCATTAAAAATG 60.224 45.455 10.83 0.00 0.00 2.32
5602 6139 2.028130 TGATCCCGGCGCATTAAAAAT 58.972 42.857 10.83 0.00 0.00 1.82
5603 6140 1.464734 TGATCCCGGCGCATTAAAAA 58.535 45.000 10.83 0.00 0.00 1.94
5604 6141 1.133407 GTTGATCCCGGCGCATTAAAA 59.867 47.619 10.83 0.00 0.00 1.52
5605 6142 0.736053 GTTGATCCCGGCGCATTAAA 59.264 50.000 10.83 0.00 0.00 1.52
5606 6143 0.393132 TGTTGATCCCGGCGCATTAA 60.393 50.000 10.83 0.00 0.00 1.40
5607 6144 0.179032 ATGTTGATCCCGGCGCATTA 60.179 50.000 10.83 0.00 0.00 1.90
5608 6145 1.447317 GATGTTGATCCCGGCGCATT 61.447 55.000 10.83 0.00 0.00 3.56
5609 6146 1.893808 GATGTTGATCCCGGCGCAT 60.894 57.895 10.83 0.00 0.00 4.73
5610 6147 2.513666 GATGTTGATCCCGGCGCA 60.514 61.111 10.83 0.00 0.00 6.09
5611 6148 3.640000 CGATGTTGATCCCGGCGC 61.640 66.667 0.00 0.00 0.00 6.53
5612 6149 3.640000 GCGATGTTGATCCCGGCG 61.640 66.667 0.00 0.00 0.00 6.46
5613 6150 1.376609 AAAGCGATGTTGATCCCGGC 61.377 55.000 0.00 0.00 0.00 6.13
5614 6151 1.867233 CTAAAGCGATGTTGATCCCGG 59.133 52.381 0.00 0.00 0.00 5.73
5615 6152 1.261619 GCTAAAGCGATGTTGATCCCG 59.738 52.381 0.00 0.00 0.00 5.14
5616 6153 2.288666 TGCTAAAGCGATGTTGATCCC 58.711 47.619 0.00 0.00 45.83 3.85
5617 6154 3.001736 GTCTGCTAAAGCGATGTTGATCC 59.998 47.826 0.00 0.00 45.83 3.36
5618 6155 3.302092 CGTCTGCTAAAGCGATGTTGATC 60.302 47.826 0.00 0.00 45.83 2.92
5619 6156 2.604914 CGTCTGCTAAAGCGATGTTGAT 59.395 45.455 0.00 0.00 45.83 2.57
5620 6157 1.992667 CGTCTGCTAAAGCGATGTTGA 59.007 47.619 0.00 0.00 45.83 3.18
5621 6158 1.527793 GCGTCTGCTAAAGCGATGTTG 60.528 52.381 13.56 0.00 45.83 3.33
5622 6159 0.721718 GCGTCTGCTAAAGCGATGTT 59.278 50.000 13.56 0.00 45.83 2.71
5623 6160 1.084370 GGCGTCTGCTAAAGCGATGT 61.084 55.000 13.56 0.00 45.83 3.06
5624 6161 1.638467 GGCGTCTGCTAAAGCGATG 59.362 57.895 9.95 9.95 45.83 3.84
5625 6162 1.521681 GGGCGTCTGCTAAAGCGAT 60.522 57.895 0.00 0.00 45.83 4.58
5626 6163 2.125673 GGGCGTCTGCTAAAGCGA 60.126 61.111 0.00 0.00 45.83 4.93
5627 6164 1.573829 TTTGGGCGTCTGCTAAAGCG 61.574 55.000 0.00 0.00 45.83 4.68
5628 6165 0.596082 TTTTGGGCGTCTGCTAAAGC 59.404 50.000 0.00 0.00 42.25 3.51
5629 6166 2.661594 GTTTTTGGGCGTCTGCTAAAG 58.338 47.619 0.00 0.00 42.25 1.85
5630 6167 1.002251 CGTTTTTGGGCGTCTGCTAAA 60.002 47.619 0.00 0.00 42.25 1.85
5631 6168 0.589223 CGTTTTTGGGCGTCTGCTAA 59.411 50.000 0.00 0.00 42.25 3.09
5632 6169 1.847890 GCGTTTTTGGGCGTCTGCTA 61.848 55.000 0.00 0.00 42.25 3.49
5633 6170 3.030652 CGTTTTTGGGCGTCTGCT 58.969 55.556 0.00 0.00 42.25 4.24
5634 6171 2.729491 GCGTTTTTGGGCGTCTGC 60.729 61.111 0.00 0.00 41.71 4.26
5635 6172 2.426752 CGCGTTTTTGGGCGTCTG 60.427 61.111 0.00 0.00 46.79 3.51
5640 6177 2.409241 TTAGGCACGCGTTTTTGGGC 62.409 55.000 10.22 10.98 0.00 5.36
5641 6178 0.386731 CTTAGGCACGCGTTTTTGGG 60.387 55.000 10.22 0.00 0.00 4.12
5642 6179 0.589223 TCTTAGGCACGCGTTTTTGG 59.411 50.000 10.22 0.00 0.00 3.28
5643 6180 1.950472 CTCTTAGGCACGCGTTTTTG 58.050 50.000 10.22 0.00 0.00 2.44
5644 6181 0.237498 GCTCTTAGGCACGCGTTTTT 59.763 50.000 10.22 0.00 0.00 1.94
5645 6182 0.882927 TGCTCTTAGGCACGCGTTTT 60.883 50.000 10.22 0.00 37.29 2.43
5646 6183 0.673644 ATGCTCTTAGGCACGCGTTT 60.674 50.000 10.22 0.00 45.36 3.60
5647 6184 1.079127 ATGCTCTTAGGCACGCGTT 60.079 52.632 10.22 0.00 45.36 4.84
5648 6185 1.519455 GATGCTCTTAGGCACGCGT 60.519 57.895 5.58 5.58 45.36 6.01
5649 6186 0.807667 AAGATGCTCTTAGGCACGCG 60.808 55.000 3.53 3.53 45.36 6.01
5652 6189 4.201861 GCTGTTAAAGATGCTCTTAGGCAC 60.202 45.833 0.00 0.00 45.36 5.01
5690 6227 2.671596 GGCAAATGAGTTTTTAGCGCA 58.328 42.857 11.47 0.00 0.00 6.09
5824 6365 7.659290 ATCGTTTTAAAAATGTACGCTATGC 57.341 32.000 1.31 0.00 32.65 3.14
5927 6479 9.464714 CTATCTAGTAGTTTTATGTCGTTGCAT 57.535 33.333 0.00 0.00 0.00 3.96
5966 6523 0.877071 GTGACGACGACTGGGAGTAA 59.123 55.000 0.00 0.00 0.00 2.24
5998 6558 2.685017 AGACCAGCGAGGATGGCA 60.685 61.111 5.19 0.00 43.70 4.92
6029 6589 0.251341 GTTGGGAGGACATGTGGCTT 60.251 55.000 1.15 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.