Multiple sequence alignment - TraesCS7D01G365300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G365300 chr7D 100.000 4743 0 0 932 5674 471866237 471870979 0.000000e+00 8759.0
1 TraesCS7D01G365300 chr7D 100.000 316 0 0 1 316 471865306 471865621 8.190000e-163 584.0
2 TraesCS7D01G365300 chr7D 94.253 87 4 1 1547 1632 218352619 218352705 1.280000e-26 132.0
3 TraesCS7D01G365300 chr7B 92.872 2413 130 19 3295 5674 495720605 495723008 0.000000e+00 3465.0
4 TraesCS7D01G365300 chr7B 94.444 684 32 4 1908 2587 495714665 495715346 0.000000e+00 1048.0
5 TraesCS7D01G365300 chr7B 93.899 672 29 5 2626 3291 495719847 495720512 0.000000e+00 1003.0
6 TraesCS7D01G365300 chr7B 95.134 596 24 2 954 1548 495714052 495714643 0.000000e+00 935.0
7 TraesCS7D01G365300 chr7B 89.628 511 33 11 942 1444 495717752 495718250 2.880000e-177 632.0
8 TraesCS7D01G365300 chr7B 94.915 236 10 2 1996 2229 495718491 495718726 8.980000e-98 368.0
9 TraesCS7D01G365300 chr7B 89.153 295 10 6 2 289 495713401 495713680 1.170000e-91 348.0
10 TraesCS7D01G365300 chr7B 92.857 224 11 4 2263 2483 495719628 495719849 2.550000e-83 320.0
11 TraesCS7D01G365300 chr7B 80.569 422 58 10 5182 5583 48392049 48391632 2.570000e-78 303.0
12 TraesCS7D01G365300 chr7B 80.000 340 36 13 1 316 495717374 495717705 7.400000e-54 222.0
13 TraesCS7D01G365300 chr7B 87.379 103 11 2 1530 1630 399888144 399888246 3.590000e-22 117.0
14 TraesCS7D01G365300 chr7A 90.110 1901 117 38 3001 4847 524701258 524699375 0.000000e+00 2403.0
15 TraesCS7D01G365300 chr7A 91.982 449 25 4 932 1369 524703180 524702732 2.250000e-173 619.0
16 TraesCS7D01G365300 chr7A 91.971 274 15 6 1632 1903 469804635 469804367 1.490000e-100 377.0
17 TraesCS7D01G365300 chr7A 81.595 326 22 11 4 316 524703506 524703206 9.500000e-58 235.0
18 TraesCS7D01G365300 chr7A 79.177 389 36 19 2630 3004 524701772 524701415 1.590000e-55 228.0
19 TraesCS7D01G365300 chr7A 85.586 111 11 5 1521 1630 501073857 501073963 1.670000e-20 111.0
20 TraesCS7D01G365300 chr1D 83.354 811 97 23 4843 5628 395632818 395633615 0.000000e+00 715.0
21 TraesCS7D01G365300 chr1D 93.130 262 15 2 1632 1893 245785305 245785047 1.150000e-101 381.0
22 TraesCS7D01G365300 chr1D 93.103 87 3 2 1547 1631 96041114 96041029 2.150000e-24 124.0
23 TraesCS7D01G365300 chr2D 82.827 757 100 21 4843 5579 487339802 487340548 0.000000e+00 651.0
24 TraesCS7D01G365300 chr2D 93.774 257 13 2 1649 1905 164992505 164992252 3.210000e-102 383.0
25 TraesCS7D01G365300 chr2D 92.164 268 18 2 1632 1899 316505932 316505668 5.370000e-100 375.0
26 TraesCS7D01G365300 chr5B 81.770 757 99 24 4849 5583 648264020 648263281 1.050000e-166 597.0
27 TraesCS7D01G365300 chr5D 80.508 826 117 22 4843 5651 361004097 361003299 1.360000e-165 593.0
28 TraesCS7D01G365300 chr4D 81.009 753 113 25 3037 3782 484686234 484686963 6.380000e-159 571.0
29 TraesCS7D01G365300 chr4D 80.756 582 81 23 4856 5418 111933059 111932490 5.250000e-115 425.0
30 TraesCS7D01G365300 chr4D 90.347 259 25 0 4160 4418 484687197 484687455 1.960000e-89 340.0
31 TraesCS7D01G365300 chr4D 80.376 372 43 15 1003 1356 484684137 484684496 7.300000e-64 255.0
32 TraesCS7D01G365300 chr3A 81.818 660 102 13 4854 5499 556265227 556265882 6.470000e-149 538.0
33 TraesCS7D01G365300 chr3A 93.258 89 4 2 1545 1632 62573484 62573397 4.610000e-26 130.0
34 TraesCS7D01G365300 chr3A 85.185 81 10 1 4849 4929 691704346 691704268 1.310000e-11 82.4
35 TraesCS7D01G365300 chr4B 80.245 734 104 26 3037 3764 617327036 617327734 1.090000e-141 514.0
36 TraesCS7D01G365300 chr4B 92.278 259 20 0 4160 4418 617333208 617333466 8.980000e-98 368.0
37 TraesCS7D01G365300 chr4B 83.102 361 42 10 1003 1355 617325480 617325829 1.540000e-80 311.0
38 TraesCS7D01G365300 chr2A 79.161 715 109 23 4935 5634 632430926 632431615 5.180000e-125 459.0
39 TraesCS7D01G365300 chr2A 92.830 265 16 2 1632 1896 677920819 677920558 1.150000e-101 381.0
40 TraesCS7D01G365300 chr6A 81.081 592 86 17 4895 5470 278577991 278578572 3.120000e-122 449.0
41 TraesCS7D01G365300 chr6A 92.222 90 4 2 1546 1633 1090283 1090371 2.150000e-24 124.0
42 TraesCS7D01G365300 chr5A 82.180 477 69 11 3311 3782 665609134 665609599 4.120000e-106 396.0
43 TraesCS7D01G365300 chr5A 89.961 259 26 0 4160 4418 665609873 665610131 9.110000e-88 335.0
44 TraesCS7D01G365300 chr5A 82.834 367 41 13 1003 1356 665606740 665607097 5.520000e-80 309.0
45 TraesCS7D01G365300 chr5A 96.774 31 1 0 5491 5521 594586246 594586276 1.000000e-02 52.8
46 TraesCS7D01G365300 chr4A 95.565 248 8 2 1649 1893 575178715 575178468 1.480000e-105 394.0
47 TraesCS7D01G365300 chr3D 95.510 245 11 0 1649 1893 285911961 285912205 5.330000e-105 392.0
48 TraesCS7D01G365300 chr3D 72.063 315 68 12 2219 2520 365160108 365159801 6.100000e-10 76.8
49 TraesCS7D01G365300 chr3B 95.528 246 9 2 1649 1893 411604988 411605232 5.330000e-105 392.0
50 TraesCS7D01G365300 chr1B 88.141 312 30 4 1586 1893 262064026 262064334 1.160000e-96 364.0
51 TraesCS7D01G365300 chr6B 92.222 90 6 1 1544 1632 152084104 152084015 5.970000e-25 126.0
52 TraesCS7D01G365300 chr2B 88.235 102 8 3 1537 1635 245822294 245822394 9.990000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G365300 chr7D 471865306 471870979 5673 False 4671.500000 8759 100.000000 1 5674 2 chr7D.!!$F2 5673
1 TraesCS7D01G365300 chr7B 495713401 495723008 9607 False 926.777778 3465 91.433556 1 5674 9 chr7B.!!$F2 5673
2 TraesCS7D01G365300 chr7A 524699375 524703506 4131 True 871.250000 2403 85.716000 4 4847 4 chr7A.!!$R2 4843
3 TraesCS7D01G365300 chr1D 395632818 395633615 797 False 715.000000 715 83.354000 4843 5628 1 chr1D.!!$F1 785
4 TraesCS7D01G365300 chr2D 487339802 487340548 746 False 651.000000 651 82.827000 4843 5579 1 chr2D.!!$F1 736
5 TraesCS7D01G365300 chr5B 648263281 648264020 739 True 597.000000 597 81.770000 4849 5583 1 chr5B.!!$R1 734
6 TraesCS7D01G365300 chr5D 361003299 361004097 798 True 593.000000 593 80.508000 4843 5651 1 chr5D.!!$R1 808
7 TraesCS7D01G365300 chr4D 111932490 111933059 569 True 425.000000 425 80.756000 4856 5418 1 chr4D.!!$R1 562
8 TraesCS7D01G365300 chr4D 484684137 484687455 3318 False 388.666667 571 83.910667 1003 4418 3 chr4D.!!$F1 3415
9 TraesCS7D01G365300 chr3A 556265227 556265882 655 False 538.000000 538 81.818000 4854 5499 1 chr3A.!!$F1 645
10 TraesCS7D01G365300 chr4B 617325480 617327734 2254 False 412.500000 514 81.673500 1003 3764 2 chr4B.!!$F2 2761
11 TraesCS7D01G365300 chr2A 632430926 632431615 689 False 459.000000 459 79.161000 4935 5634 1 chr2A.!!$F1 699
12 TraesCS7D01G365300 chr6A 278577991 278578572 581 False 449.000000 449 81.081000 4895 5470 1 chr6A.!!$F2 575
13 TraesCS7D01G365300 chr5A 665606740 665610131 3391 False 346.666667 396 84.991667 1003 4418 3 chr5A.!!$F2 3415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 110 1.221021 GGTGTAGTGGGTAGCAGCC 59.779 63.158 0.00 0.00 36.00 4.85 F
1560 2281 1.064091 ACCTACTACTTCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46 F
1659 2380 0.038166 CACAGTGGGCCCATGTTACT 59.962 55.000 31.45 17.76 0.00 2.24 F
1661 2382 1.280998 ACAGTGGGCCCATGTTACTAC 59.719 52.381 31.45 12.75 0.00 2.73 F
1662 2383 1.559682 CAGTGGGCCCATGTTACTACT 59.440 52.381 31.45 15.20 0.00 2.57 F
1663 2384 1.838077 AGTGGGCCCATGTTACTACTC 59.162 52.381 31.45 11.05 0.00 2.59 F
1664 2385 1.838077 GTGGGCCCATGTTACTACTCT 59.162 52.381 31.45 0.00 0.00 3.24 F
2565 3782 2.231235 GGAAGTATGGTTGTTTGGGCAG 59.769 50.000 0.00 0.00 0.00 4.85 F
3815 11152 0.532573 ATGTACACCGAGGCACTGAG 59.467 55.000 0.00 0.00 41.55 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 2361 0.038166 AGTAACATGGGCCCACTGTG 59.962 55.000 31.51 24.93 0.00 3.66 R
3034 9699 0.972471 ATAGGCCCAAAACCTGCAGC 60.972 55.000 8.66 0.00 38.26 5.25 R
3122 10020 2.031333 GGAAGCTTGTGTCTTTCAGCTG 60.031 50.000 7.63 7.63 32.56 4.24 R
3645 10975 3.015145 CCCACCCTCCAATCCGGT 61.015 66.667 0.00 0.00 35.57 5.28 R
3699 11029 2.036958 TCATGTAAACCGCCCATGAG 57.963 50.000 0.00 0.00 39.87 2.90 R
3708 11038 1.282157 ACCTCCTGCCTCATGTAAACC 59.718 52.381 0.00 0.00 0.00 3.27 R
3711 11041 1.951209 TCACCTCCTGCCTCATGTAA 58.049 50.000 0.00 0.00 0.00 2.41 R
3926 11280 0.391130 GTGCCAGGCTGATCACGTAA 60.391 55.000 17.94 0.00 0.00 3.18 R
4962 12384 0.101399 CTATGTCGCTGCTTCTCGGT 59.899 55.000 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 107 1.621814 GAACTGGTGTAGTGGGTAGCA 59.378 52.381 0.00 0.00 40.26 3.49
92 108 1.267121 ACTGGTGTAGTGGGTAGCAG 58.733 55.000 0.00 0.00 43.49 4.24
94 110 1.221021 GGTGTAGTGGGTAGCAGCC 59.779 63.158 0.00 0.00 36.00 4.85
101 117 2.512896 GGGTAGCAGCCCCATGAG 59.487 66.667 1.86 0.00 42.89 2.90
102 118 2.072487 GGGTAGCAGCCCCATGAGA 61.072 63.158 1.86 0.00 42.89 3.27
220 236 3.135712 ACGGTTGGATGGTTGCATAGATA 59.864 43.478 0.00 0.00 0.00 1.98
221 237 3.748048 CGGTTGGATGGTTGCATAGATAG 59.252 47.826 0.00 0.00 0.00 2.08
222 238 4.503123 CGGTTGGATGGTTGCATAGATAGA 60.503 45.833 0.00 0.00 0.00 1.98
223 239 5.564550 GGTTGGATGGTTGCATAGATAGAT 58.435 41.667 0.00 0.00 0.00 1.98
249 265 3.489785 GGTAATGTCAACGTCATCGATCC 59.510 47.826 0.00 0.00 40.62 3.36
267 283 2.401766 CGTCTTCCCATGGTGCTGC 61.402 63.158 11.73 0.00 0.00 5.25
268 284 2.048603 GTCTTCCCATGGTGCTGCC 61.049 63.158 11.73 0.00 37.90 4.85
269 285 2.757099 CTTCCCATGGTGCTGCCC 60.757 66.667 11.73 0.00 36.04 5.36
950 966 2.068834 CCCCGCGATATACCCTAGAT 57.931 55.000 8.23 0.00 0.00 1.98
960 976 2.953284 TACCCTAGATCCTCCACTCG 57.047 55.000 0.00 0.00 0.00 4.18
1047 1067 2.122167 GCCTCTCCTCGACGTCCAT 61.122 63.158 10.58 0.00 0.00 3.41
1126 1149 3.410628 TCGCCAGATGGGGTGCAT 61.411 61.111 14.80 0.00 46.93 3.96
1177 1200 2.267961 GTTCGATTCCACCGCCCT 59.732 61.111 0.00 0.00 0.00 5.19
1432 1505 4.771590 TGAGAATTTGCTCATTGGACAC 57.228 40.909 0.00 0.00 39.84 3.67
1515 2236 7.136119 GGAAATTACTGTGTCGTCATGAAAAA 58.864 34.615 0.00 0.00 0.00 1.94
1536 2257 7.838771 AAAATTTCTGGCAAAATCATCTAGC 57.161 32.000 7.69 0.00 0.00 3.42
1549 2270 9.167311 CAAAATCATCTAGCAAAACCTACTACT 57.833 33.333 0.00 0.00 0.00 2.57
1550 2271 9.740710 AAAATCATCTAGCAAAACCTACTACTT 57.259 29.630 0.00 0.00 0.00 2.24
1551 2272 8.950208 AATCATCTAGCAAAACCTACTACTTC 57.050 34.615 0.00 0.00 0.00 3.01
1552 2273 6.875076 TCATCTAGCAAAACCTACTACTTCC 58.125 40.000 0.00 0.00 0.00 3.46
1554 2275 6.527057 TCTAGCAAAACCTACTACTTCCTC 57.473 41.667 0.00 0.00 0.00 3.71
1559 2280 2.433662 ACCTACTACTTCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
1560 2281 1.064091 ACCTACTACTTCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
1561 2282 1.064166 CCTACTACTTCCTCCGTCCCA 60.064 57.143 0.00 0.00 0.00 4.37
1563 2284 3.181436 CCTACTACTTCCTCCGTCCCATA 60.181 52.174 0.00 0.00 0.00 2.74
1569 2290 7.243824 ACTACTTCCTCCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
1572 2293 6.437793 ACTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
1574 2295 5.715279 TCCTCCGTCCCATAATATAAGAGTG 59.285 44.000 0.00 0.00 0.00 3.51
1576 2297 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
1617 2338 9.120422 GTGTTAAAAACGTTCTTATATTGTGGG 57.880 33.333 0.00 0.00 0.00 4.61
1619 2340 9.333497 GTTAAAAACGTTCTTATATTGTGGGAC 57.667 33.333 0.00 0.00 0.00 4.46
1621 2342 6.737254 AAACGTTCTTATATTGTGGGACAG 57.263 37.500 0.00 0.00 41.80 3.51
1622 2343 5.670792 ACGTTCTTATATTGTGGGACAGA 57.329 39.130 0.00 0.00 41.80 3.41
1624 2345 5.050490 CGTTCTTATATTGTGGGACAGAGG 58.950 45.833 0.00 0.00 41.80 3.69
1625 2346 5.163447 CGTTCTTATATTGTGGGACAGAGGA 60.163 44.000 0.00 0.00 41.80 3.71
1626 2347 6.629515 CGTTCTTATATTGTGGGACAGAGGAA 60.630 42.308 0.00 0.00 41.80 3.36
1627 2348 6.485830 TCTTATATTGTGGGACAGAGGAAG 57.514 41.667 0.00 0.00 41.80 3.46
1628 2349 5.964477 TCTTATATTGTGGGACAGAGGAAGT 59.036 40.000 0.00 0.00 41.80 3.01
1629 2350 7.130099 TCTTATATTGTGGGACAGAGGAAGTA 58.870 38.462 0.00 0.00 41.80 2.24
1630 2351 5.878406 ATATTGTGGGACAGAGGAAGTAG 57.122 43.478 0.00 0.00 41.80 2.57
1631 2352 2.696526 TGTGGGACAGAGGAAGTAGT 57.303 50.000 0.00 0.00 41.80 2.73
1632 2353 3.820195 TGTGGGACAGAGGAAGTAGTA 57.180 47.619 0.00 0.00 41.80 1.82
1633 2354 3.698289 TGTGGGACAGAGGAAGTAGTAG 58.302 50.000 0.00 0.00 41.80 2.57
1635 2356 3.695556 GTGGGACAGAGGAAGTAGTAGAC 59.304 52.174 0.00 0.00 41.80 2.59
1638 2359 5.104444 TGGGACAGAGGAAGTAGTAGACTAG 60.104 48.000 0.00 0.00 37.44 2.57
1639 2360 4.818005 GGACAGAGGAAGTAGTAGACTAGC 59.182 50.000 0.00 0.00 37.44 3.42
1640 2361 4.784177 ACAGAGGAAGTAGTAGACTAGCC 58.216 47.826 0.00 0.00 37.44 3.93
1641 2362 4.227754 ACAGAGGAAGTAGTAGACTAGCCA 59.772 45.833 0.00 0.00 37.44 4.75
1642 2363 4.577283 CAGAGGAAGTAGTAGACTAGCCAC 59.423 50.000 0.00 0.00 37.44 5.01
1644 2365 4.528920 AGGAAGTAGTAGACTAGCCACAG 58.471 47.826 0.00 0.00 37.44 3.66
1645 2366 4.018233 AGGAAGTAGTAGACTAGCCACAGT 60.018 45.833 0.00 0.00 37.44 3.55
1647 2368 3.622630 AGTAGTAGACTAGCCACAGTGG 58.377 50.000 16.16 16.16 37.30 4.00
1648 2369 1.853963 AGTAGACTAGCCACAGTGGG 58.146 55.000 21.77 7.25 38.19 4.61
1656 2377 2.118076 CCACAGTGGGCCCATGTT 59.882 61.111 31.45 14.58 32.67 2.71
1657 2378 1.382240 CCACAGTGGGCCCATGTTA 59.618 57.895 31.45 0.00 32.67 2.41
1659 2380 0.038166 CACAGTGGGCCCATGTTACT 59.962 55.000 31.45 17.76 0.00 2.24
1661 2382 1.280998 ACAGTGGGCCCATGTTACTAC 59.719 52.381 31.45 12.75 0.00 2.73
1662 2383 1.559682 CAGTGGGCCCATGTTACTACT 59.440 52.381 31.45 15.20 0.00 2.57
1663 2384 1.838077 AGTGGGCCCATGTTACTACTC 59.162 52.381 31.45 11.05 0.00 2.59
1664 2385 1.838077 GTGGGCCCATGTTACTACTCT 59.162 52.381 31.45 0.00 0.00 3.24
1666 2387 3.646637 GTGGGCCCATGTTACTACTCTAT 59.353 47.826 31.45 0.00 0.00 1.98
1667 2388 3.646162 TGGGCCCATGTTACTACTCTATG 59.354 47.826 24.45 0.00 0.00 2.23
1668 2389 3.646637 GGGCCCATGTTACTACTCTATGT 59.353 47.826 19.95 0.00 0.00 2.29
1669 2390 4.102681 GGGCCCATGTTACTACTCTATGTT 59.897 45.833 19.95 0.00 0.00 2.71
1670 2391 5.306160 GGGCCCATGTTACTACTCTATGTTA 59.694 44.000 19.95 0.00 0.00 2.41
1671 2392 6.221659 GGCCCATGTTACTACTCTATGTTAC 58.778 44.000 0.00 0.00 0.00 2.50
1672 2393 6.041751 GGCCCATGTTACTACTCTATGTTACT 59.958 42.308 0.00 0.00 0.00 2.24
1673 2394 7.232127 GGCCCATGTTACTACTCTATGTTACTA 59.768 40.741 0.00 0.00 0.00 1.82
1674 2395 8.081025 GCCCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
1675 2396 8.574737 CCCATGTTACTACTCTATGTTACTACC 58.425 40.741 0.00 0.00 0.00 3.18
1686 2407 8.384718 ACTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
1687 2408 7.696981 TCTATGTTACTACCTCTATAGTGGGG 58.303 42.308 21.82 16.35 36.09 4.96
1688 2409 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
1689 2410 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
1690 2411 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
1691 2412 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
1692 2413 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
1693 2414 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
1694 2415 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
1695 2416 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
1696 2417 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
1697 2418 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
1699 2420 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
1700 2421 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
1701 2422 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
1702 2423 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
1704 2425 4.721776 AGTGGGGAGTAACATATGTGTGAT 59.278 41.667 9.63 0.00 38.92 3.06
1705 2426 5.903010 AGTGGGGAGTAACATATGTGTGATA 59.097 40.000 9.63 0.00 38.92 2.15
1707 2428 6.482308 GTGGGGAGTAACATATGTGTGATAAC 59.518 42.308 9.63 1.91 38.92 1.89
1709 2430 7.147391 TGGGGAGTAACATATGTGTGATAACAT 60.147 37.037 9.63 0.00 43.21 2.71
1716 2437 6.554419 ACATATGTGTGATAACATGCAACAC 58.446 36.000 7.78 8.32 40.93 3.32
1717 2438 6.375174 ACATATGTGTGATAACATGCAACACT 59.625 34.615 7.78 5.41 40.93 3.55
1718 2439 5.710513 ATGTGTGATAACATGCAACACTT 57.289 34.783 14.68 7.42 39.32 3.16
1719 2440 5.107109 TGTGTGATAACATGCAACACTTC 57.893 39.130 14.68 0.79 33.41 3.01
1720 2441 4.578105 TGTGTGATAACATGCAACACTTCA 59.422 37.500 14.68 3.18 33.41 3.02
1721 2442 5.241285 TGTGTGATAACATGCAACACTTCAT 59.759 36.000 14.68 0.00 33.41 2.57
1722 2443 6.151691 GTGTGATAACATGCAACACTTCATT 58.848 36.000 8.05 0.00 33.41 2.57
1723 2444 6.642131 GTGTGATAACATGCAACACTTCATTT 59.358 34.615 8.05 0.00 33.41 2.32
1724 2445 7.807433 GTGTGATAACATGCAACACTTCATTTA 59.193 33.333 8.05 0.00 33.41 1.40
1725 2446 8.522003 TGTGATAACATGCAACACTTCATTTAT 58.478 29.630 0.00 0.00 33.41 1.40
1730 2451 6.332630 ACATGCAACACTTCATTTATTAGGC 58.667 36.000 0.00 0.00 0.00 3.93
1731 2452 6.153340 ACATGCAACACTTCATTTATTAGGCT 59.847 34.615 0.00 0.00 0.00 4.58
1732 2453 7.339212 ACATGCAACACTTCATTTATTAGGCTA 59.661 33.333 0.00 0.00 0.00 3.93
1733 2454 7.880160 TGCAACACTTCATTTATTAGGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
1734 2455 8.972458 TGCAACACTTCATTTATTAGGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
1735 2456 9.056005 TGCAACACTTCATTTATTAGGCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
1736 2457 9.273016 GCAACACTTCATTTATTAGGCTATAGA 57.727 33.333 3.21 0.00 0.00 1.98
1746 2467 9.883142 ATTTATTAGGCTATAGACTCATCTTGC 57.117 33.333 12.64 0.00 36.29 4.01
1747 2468 5.730296 TTAGGCTATAGACTCATCTTGCC 57.270 43.478 12.64 0.00 41.26 4.52
1748 2469 3.855668 AGGCTATAGACTCATCTTGCCT 58.144 45.455 0.83 0.00 43.78 4.75
1750 2471 4.040217 AGGCTATAGACTCATCTTGCCTTG 59.960 45.833 0.83 0.00 45.01 3.61
1751 2472 4.039730 GGCTATAGACTCATCTTGCCTTGA 59.960 45.833 3.21 0.00 39.50 3.02
1752 2473 5.279910 GGCTATAGACTCATCTTGCCTTGAT 60.280 44.000 3.21 0.00 39.50 2.57
1753 2474 6.071108 GGCTATAGACTCATCTTGCCTTGATA 60.071 42.308 3.21 0.00 39.50 2.15
1754 2475 7.364585 GGCTATAGACTCATCTTGCCTTGATAT 60.365 40.741 3.21 0.00 39.50 1.63
1758 2479 5.104610 AGACTCATCTTGCCTTGATATGTGT 60.105 40.000 0.00 0.00 0.00 3.72
1759 2480 4.880120 ACTCATCTTGCCTTGATATGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
1762 2483 5.529800 TCATCTTGCCTTGATATGTGTGATG 59.470 40.000 0.00 0.00 0.00 3.07
1763 2484 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
1765 2486 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
1766 2487 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
1767 2488 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
1768 2489 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
1769 2490 5.050769 GCCTTGATATGTGTGATGTTACTCG 60.051 44.000 0.00 0.00 0.00 4.18
1770 2491 6.042777 CCTTGATATGTGTGATGTTACTCGT 58.957 40.000 0.00 0.00 0.00 4.18
1772 2493 7.167635 CCTTGATATGTGTGATGTTACTCGTAC 59.832 40.741 0.00 0.00 0.00 3.67
1773 2494 7.329588 TGATATGTGTGATGTTACTCGTACT 57.670 36.000 0.00 0.00 0.00 2.73
1775 2496 8.340443 TGATATGTGTGATGTTACTCGTACTAC 58.660 37.037 0.00 0.00 0.00 2.73
1776 2497 6.754702 ATGTGTGATGTTACTCGTACTACT 57.245 37.500 0.00 0.00 0.00 2.57
1777 2498 7.854557 ATGTGTGATGTTACTCGTACTACTA 57.145 36.000 0.00 0.00 0.00 1.82
1779 2500 8.272545 TGTGTGATGTTACTCGTACTACTAAT 57.727 34.615 0.00 0.00 0.00 1.73
1787 2508 9.823647 TGTTACTCGTACTACTAATAACTAGCT 57.176 33.333 0.00 0.00 0.00 3.32
1791 2512 9.995003 ACTCGTACTACTAATAACTAGCTATGT 57.005 33.333 0.00 0.00 0.00 2.29
1800 2521 9.982651 ACTAATAACTAGCTATGTTACCACATG 57.017 33.333 14.19 0.00 43.92 3.21
1801 2522 9.982651 CTAATAACTAGCTATGTTACCACATGT 57.017 33.333 14.19 0.00 43.92 3.21
1802 2523 8.888579 AATAACTAGCTATGTTACCACATGTC 57.111 34.615 14.19 0.00 43.92 3.06
1803 2524 6.546428 AACTAGCTATGTTACCACATGTCT 57.454 37.500 0.00 0.00 43.92 3.41
1804 2525 6.150396 ACTAGCTATGTTACCACATGTCTC 57.850 41.667 0.00 0.00 43.92 3.36
1805 2526 5.894393 ACTAGCTATGTTACCACATGTCTCT 59.106 40.000 0.00 0.00 43.92 3.10
1806 2527 5.269505 AGCTATGTTACCACATGTCTCTC 57.730 43.478 0.00 0.00 43.92 3.20
1807 2528 4.959210 AGCTATGTTACCACATGTCTCTCT 59.041 41.667 0.00 0.00 43.92 3.10
1809 2530 6.070538 AGCTATGTTACCACATGTCTCTCTTT 60.071 38.462 0.00 0.00 43.92 2.52
1811 2532 5.808366 TGTTACCACATGTCTCTCTTTCT 57.192 39.130 0.00 0.00 0.00 2.52
1812 2533 6.174720 TGTTACCACATGTCTCTCTTTCTT 57.825 37.500 0.00 0.00 0.00 2.52
1813 2534 6.223852 TGTTACCACATGTCTCTCTTTCTTC 58.776 40.000 0.00 0.00 0.00 2.87
1814 2535 4.963318 ACCACATGTCTCTCTTTCTTCA 57.037 40.909 0.00 0.00 0.00 3.02
1815 2536 5.495926 ACCACATGTCTCTCTTTCTTCAT 57.504 39.130 0.00 0.00 0.00 2.57
1816 2537 5.874093 ACCACATGTCTCTCTTTCTTCATT 58.126 37.500 0.00 0.00 0.00 2.57
1818 2539 7.453393 ACCACATGTCTCTCTTTCTTCATTTA 58.547 34.615 0.00 0.00 0.00 1.40
1819 2540 8.105829 ACCACATGTCTCTCTTTCTTCATTTAT 58.894 33.333 0.00 0.00 0.00 1.40
1820 2541 8.954350 CCACATGTCTCTCTTTCTTCATTTATT 58.046 33.333 0.00 0.00 0.00 1.40
1821 2542 9.770503 CACATGTCTCTCTTTCTTCATTTATTG 57.229 33.333 0.00 0.00 0.00 1.90
1822 2543 8.457261 ACATGTCTCTCTTTCTTCATTTATTGC 58.543 33.333 0.00 0.00 0.00 3.56
1825 2546 8.509690 TGTCTCTCTTTCTTCATTTATTGCTTG 58.490 33.333 0.00 0.00 0.00 4.01
1826 2547 8.510505 GTCTCTCTTTCTTCATTTATTGCTTGT 58.489 33.333 0.00 0.00 0.00 3.16
1827 2548 8.725148 TCTCTCTTTCTTCATTTATTGCTTGTC 58.275 33.333 0.00 0.00 0.00 3.18
1829 2550 8.292448 TCTCTTTCTTCATTTATTGCTTGTCAC 58.708 33.333 0.00 0.00 0.00 3.67
1830 2551 7.939782 TCTTTCTTCATTTATTGCTTGTCACA 58.060 30.769 0.00 0.00 0.00 3.58
1831 2552 8.579006 TCTTTCTTCATTTATTGCTTGTCACAT 58.421 29.630 0.00 0.00 0.00 3.21
1832 2553 8.746922 TTTCTTCATTTATTGCTTGTCACATC 57.253 30.769 0.00 0.00 0.00 3.06
1833 2554 7.451501 TCTTCATTTATTGCTTGTCACATCA 57.548 32.000 0.00 0.00 0.00 3.07
1834 2555 8.058667 TCTTCATTTATTGCTTGTCACATCAT 57.941 30.769 0.00 0.00 0.00 2.45
1835 2556 8.186163 TCTTCATTTATTGCTTGTCACATCATC 58.814 33.333 0.00 0.00 0.00 2.92
1837 2558 8.735692 TCATTTATTGCTTGTCACATCATCTA 57.264 30.769 0.00 0.00 0.00 1.98
1838 2559 9.346005 TCATTTATTGCTTGTCACATCATCTAT 57.654 29.630 0.00 0.00 0.00 1.98
1839 2560 9.961265 CATTTATTGCTTGTCACATCATCTATT 57.039 29.630 0.00 0.00 0.00 1.73
1877 2598 9.850628 TGTGTGATGTTACTACTAATGTTACTC 57.149 33.333 0.00 0.00 0.00 2.59
1878 2599 9.298774 GTGTGATGTTACTACTAATGTTACTCC 57.701 37.037 0.00 0.00 0.00 3.85
1879 2600 8.472413 TGTGATGTTACTACTAATGTTACTCCC 58.528 37.037 0.00 0.00 0.00 4.30
1880 2601 8.472413 GTGATGTTACTACTAATGTTACTCCCA 58.528 37.037 0.00 0.00 0.00 4.37
1881 2602 8.472413 TGATGTTACTACTAATGTTACTCCCAC 58.528 37.037 0.00 0.00 0.00 4.61
1882 2603 8.605325 ATGTTACTACTAATGTTACTCCCACT 57.395 34.615 0.00 0.00 0.00 4.00
1883 2604 7.833786 TGTTACTACTAATGTTACTCCCACTG 58.166 38.462 0.00 0.00 0.00 3.66
1885 2606 6.282199 ACTACTAATGTTACTCCCACTGTG 57.718 41.667 0.00 0.00 0.00 3.66
1886 2607 4.553330 ACTAATGTTACTCCCACTGTGG 57.447 45.455 20.01 20.01 37.25 4.17
1915 2640 8.355169 GGTCGTACCAGTAATTGTATAGATTCA 58.645 37.037 0.00 0.00 38.42 2.57
1921 2646 9.561069 ACCAGTAATTGTATAGATTCAATGGTC 57.439 33.333 0.00 0.00 34.98 4.02
1978 2992 9.750125 GAAAACTCCAAAATATTATCATGGGTC 57.250 33.333 0.00 0.00 0.00 4.46
2140 3164 3.266510 TGCATGTGGTATGGAGAGTTC 57.733 47.619 0.00 0.00 0.00 3.01
2195 3219 8.626526 TGGTATTTGGACTAAAGAGTGAAAAAC 58.373 33.333 0.00 0.00 35.45 2.43
2238 3262 4.392047 CATGCATAGAAGTATTGGCTGGA 58.608 43.478 0.00 0.00 0.00 3.86
2262 3286 7.510675 AGTATCCTCTATTCCCAAAAACTGA 57.489 36.000 0.00 0.00 0.00 3.41
2281 3306 8.611654 AAACTGAATCAATTTTTCATGGGAAG 57.388 30.769 0.00 0.00 32.94 3.46
2298 3323 3.181483 GGGAAGAATGCATTGCTACAAGG 60.181 47.826 18.59 0.00 0.00 3.61
2333 3549 9.232473 AGATGGGTCTAACAAAATAAAAGAGAC 57.768 33.333 0.00 0.00 31.36 3.36
2518 3735 3.785486 TGCGTGAGGAATCATCTAGTTG 58.215 45.455 0.00 0.00 0.00 3.16
2533 3750 8.833231 TCATCTAGTTGTTCTAAAAAGACTGG 57.167 34.615 0.83 0.00 0.00 4.00
2565 3782 2.231235 GGAAGTATGGTTGTTTGGGCAG 59.769 50.000 0.00 0.00 0.00 4.85
2628 3847 8.541899 TTTTCCTAAATAACTCCTTTTGTGGT 57.458 30.769 0.00 0.00 0.00 4.16
2686 8364 9.448438 AAAGGATAAATATGCCAAACCTTTTTC 57.552 29.630 0.00 0.00 41.62 2.29
2780 8466 8.797438 AGACTCTGAAAAGATAAATGGAAAACC 58.203 33.333 0.00 0.00 0.00 3.27
2870 8568 9.988350 AATGCGTAATAGTGTAATTTTTCTCAG 57.012 29.630 0.00 0.00 0.00 3.35
2871 8569 8.542497 TGCGTAATAGTGTAATTTTTCTCAGT 57.458 30.769 0.00 0.00 0.00 3.41
2883 8582 4.320608 TTTTCTCAGTCAAATTGTGGCC 57.679 40.909 0.00 0.00 29.16 5.36
2975 8687 5.564550 ACTCTGCATTTCCTGATTTAGTGT 58.435 37.500 0.00 0.00 0.00 3.55
2976 8688 5.413833 ACTCTGCATTTCCTGATTTAGTGTG 59.586 40.000 0.00 0.00 0.00 3.82
3019 9684 6.228258 TCCATGTACCAAAGTTTACTCAGTC 58.772 40.000 0.00 0.00 0.00 3.51
3026 9691 7.881775 ACCAAAGTTTACTCAGTCAAGAAAT 57.118 32.000 0.00 0.00 0.00 2.17
3028 9693 9.574516 ACCAAAGTTTACTCAGTCAAGAAATAT 57.425 29.630 0.00 0.00 0.00 1.28
3029 9694 9.831737 CCAAAGTTTACTCAGTCAAGAAATATG 57.168 33.333 0.00 0.00 0.00 1.78
3034 9699 7.615582 TTACTCAGTCAAGAAATATGCTTGG 57.384 36.000 14.94 5.18 42.24 3.61
3122 10020 2.553172 ACCGGACTGCTTATCTACGATC 59.447 50.000 9.46 0.00 0.00 3.69
3145 10043 2.575532 CTGAAAGACACAAGCTTCCCA 58.424 47.619 0.00 0.00 34.07 4.37
3493 10820 4.389576 CGCTTGCGCTGTGGAACC 62.390 66.667 9.73 0.00 34.36 3.62
3627 10954 2.343758 GCTGACGAGGAGGTGCAA 59.656 61.111 0.00 0.00 0.00 4.08
3708 11038 4.100084 TGCTGGGACTCATGGGCG 62.100 66.667 0.00 0.00 0.00 6.13
3711 11041 2.933287 TGGGACTCATGGGCGGTT 60.933 61.111 0.00 0.00 0.00 4.44
3794 11124 5.193679 ACTAAGGTAATCAAGGCATGGAAC 58.806 41.667 0.00 0.00 0.00 3.62
3815 11152 0.532573 ATGTACACCGAGGCACTGAG 59.467 55.000 0.00 0.00 41.55 3.35
3834 11178 3.054875 TGAGCCTCTTGTATGCATTCAGT 60.055 43.478 3.54 0.00 0.00 3.41
4085 11454 4.991776 TCATCCATTTTCAGTACCCACAA 58.008 39.130 0.00 0.00 0.00 3.33
4101 11470 0.098728 ACAAACGCACTGCACTTGTC 59.901 50.000 10.54 0.00 30.60 3.18
4125 11497 2.041485 TCAATTGCTTGGACTGATGGGA 59.959 45.455 0.00 0.00 32.95 4.37
4318 11690 3.063084 GACAGCGTCCCGGACTCT 61.063 66.667 15.70 10.17 0.00 3.24
4446 11818 8.721478 GCATATCGATCAGCTCCTTTTAATTAA 58.279 33.333 0.00 0.00 0.00 1.40
4619 11996 3.455685 CGCGTACGGAAACACCTC 58.544 61.111 18.39 0.00 36.31 3.85
4625 12002 2.423577 GTACGGAAACACCTCTTGCAT 58.576 47.619 0.00 0.00 36.31 3.96
4640 12017 4.914983 TCTTGCATCTGGACAAGATCTTT 58.085 39.130 4.86 0.00 45.48 2.52
4835 12218 1.359848 CGGTGCTGGCTAGTGTAAAG 58.640 55.000 0.00 0.00 0.00 1.85
4840 12223 4.941873 GGTGCTGGCTAGTGTAAAGTAATT 59.058 41.667 0.00 0.00 0.00 1.40
4918 12321 0.652180 CAACGGTACAACACAACGCG 60.652 55.000 3.53 3.53 0.00 6.01
4933 12355 0.859232 ACGCGACAGCACAAAGTAAG 59.141 50.000 15.93 0.00 45.49 2.34
4939 12361 4.762809 CGACAGCACAAAGTAAGAGAAAC 58.237 43.478 0.00 0.00 0.00 2.78
4962 12384 2.872732 CTCCGGCAAGATACCTAGGTA 58.127 52.381 23.82 23.82 34.87 3.08
5015 12437 3.840666 AGAAAGTGAGACATTGGAGCCTA 59.159 43.478 0.00 0.00 0.00 3.93
5070 12500 1.522580 GAAGGAGATCAGCCGGCAC 60.523 63.158 31.54 16.56 0.00 5.01
5100 12530 2.053865 CCAATGCCATCGCTTGGGT 61.054 57.895 6.39 0.00 46.55 4.51
5127 12559 2.398554 CCAACGCCATCCTGTTCCG 61.399 63.158 0.00 0.00 0.00 4.30
5260 12696 0.034059 AGGTCTTCGAGCACAACCAG 59.966 55.000 6.55 0.00 31.89 4.00
5471 12913 2.242043 CAATGGTTTTCACCCAGAGCT 58.758 47.619 0.00 0.00 43.49 4.09
5490 12932 1.283029 CTCATGGTGAATGGGGTCACT 59.717 52.381 5.40 0.00 45.98 3.41
5540 12989 2.289382 ACACACAACATCGCTATCACCA 60.289 45.455 0.00 0.00 0.00 4.17
5567 13018 3.632189 GACACAGTTAGGCAAAGCTTTG 58.368 45.455 30.70 30.70 41.03 2.77
5583 13034 0.832135 TTTGGCTCAGGACTCGACCT 60.832 55.000 0.00 0.00 41.43 3.85
5584 13035 0.832135 TTGGCTCAGGACTCGACCTT 60.832 55.000 0.00 0.00 38.32 3.50
5588 13039 0.172352 CTCAGGACTCGACCTTCAGC 59.828 60.000 0.00 0.00 38.32 4.26
5609 13060 1.212935 CCCCCACCAACTAGATCCAAG 59.787 57.143 0.00 0.00 0.00 3.61
5648 13099 0.249573 AAGTTACACACGACACCCGG 60.250 55.000 0.00 0.00 43.93 5.73
5651 13102 0.680618 TTACACACGACACCCGGAAT 59.319 50.000 0.73 0.00 43.93 3.01
5653 13104 0.245539 ACACACGACACCCGGAATAG 59.754 55.000 0.73 0.00 43.93 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.368808 CCGCGAACACCGTTGCTG 62.369 66.667 8.23 0.00 41.15 4.41
30 31 5.543714 TGTACAGTATTGAAACCATCGTGT 58.456 37.500 0.00 0.00 0.00 4.49
38 39 5.321516 GTTCGCCATGTACAGTATTGAAAC 58.678 41.667 0.33 0.00 0.00 2.78
91 107 2.090606 AGATTCTCTCTCTCATGGGGCT 60.091 50.000 0.00 0.00 0.00 5.19
92 108 2.299867 GAGATTCTCTCTCTCATGGGGC 59.700 54.545 6.42 0.00 45.97 5.80
102 118 1.969240 GCAGGTGGGGAGATTCTCTCT 60.969 57.143 13.20 1.95 42.95 3.10
155 171 2.065906 TTGGTTTTTGTCGCCGCTCC 62.066 55.000 0.00 0.00 0.00 4.70
198 214 1.280710 TCTATGCAACCATCCAACCGT 59.719 47.619 0.00 0.00 32.85 4.83
220 236 3.513912 TGACGTTGACATTACCCTGATCT 59.486 43.478 0.00 0.00 0.00 2.75
221 237 3.857052 TGACGTTGACATTACCCTGATC 58.143 45.455 0.00 0.00 0.00 2.92
222 238 3.973206 TGACGTTGACATTACCCTGAT 57.027 42.857 0.00 0.00 0.00 2.90
223 239 3.674955 CGATGACGTTGACATTACCCTGA 60.675 47.826 0.00 0.00 34.56 3.86
249 265 2.401766 GCAGCACCATGGGAAGACG 61.402 63.158 18.09 0.04 0.00 4.18
267 283 4.038804 TGAAGGGGAGGGGAGGGG 62.039 72.222 0.00 0.00 0.00 4.79
268 284 2.692741 GTGAAGGGGAGGGGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
269 285 3.083997 CGTGAAGGGGAGGGGAGG 61.084 72.222 0.00 0.00 0.00 4.30
935 951 3.633065 GTGGAGGATCTAGGGTATATCGC 59.367 52.174 0.00 0.00 33.73 4.58
937 953 5.127491 CGAGTGGAGGATCTAGGGTATATC 58.873 50.000 0.00 0.00 33.73 1.63
950 966 0.392193 GTACCGAGACGAGTGGAGGA 60.392 60.000 0.00 0.00 0.00 3.71
960 976 2.350537 CGCGCTACGTACCGAGAC 60.351 66.667 14.23 0.00 36.87 3.36
1096 1119 4.162690 GGCGAGGAAGTGGCCGAT 62.163 66.667 0.00 0.00 40.69 4.18
1177 1200 2.675844 CAACGAGGGCACGATCAAATTA 59.324 45.455 9.99 0.00 37.03 1.40
1369 1421 7.425606 AGCGTTGAAAAATTGAACAGTCTAAT 58.574 30.769 0.00 0.00 0.00 1.73
1372 1424 5.066505 AGAGCGTTGAAAAATTGAACAGTCT 59.933 36.000 0.00 0.00 0.00 3.24
1432 1505 5.363580 AGGCATTCAAATACCCAATTACCAG 59.636 40.000 0.00 0.00 0.00 4.00
1515 2236 6.534475 TTGCTAGATGATTTTGCCAGAAAT 57.466 33.333 0.00 0.00 32.16 2.17
1536 2257 4.492611 GACGGAGGAAGTAGTAGGTTTTG 58.507 47.826 0.00 0.00 0.00 2.44
1549 2270 6.210784 CACTCTTATATTATGGGACGGAGGAA 59.789 42.308 0.00 0.00 0.00 3.36
1550 2271 5.715279 CACTCTTATATTATGGGACGGAGGA 59.285 44.000 0.00 0.00 0.00 3.71
1551 2272 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
1552 2273 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
1554 2275 9.550406 TTAAAACACTCTTATATTATGGGACGG 57.450 33.333 0.00 0.00 0.00 4.79
1590 2311 9.887406 CCACAATATAAGAACGTTTTTAACACT 57.113 29.630 14.41 2.21 0.00 3.55
1592 2313 9.064706 TCCCACAATATAAGAACGTTTTTAACA 57.935 29.630 14.41 6.96 0.00 2.41
1594 2315 9.064706 TGTCCCACAATATAAGAACGTTTTTAA 57.935 29.630 14.41 5.85 0.00 1.52
1595 2316 8.618702 TGTCCCACAATATAAGAACGTTTTTA 57.381 30.769 13.02 13.02 0.00 1.52
1597 2318 6.938030 TCTGTCCCACAATATAAGAACGTTTT 59.062 34.615 0.46 0.00 0.00 2.43
1599 2320 6.045072 TCTGTCCCACAATATAAGAACGTT 57.955 37.500 0.00 0.00 0.00 3.99
1600 2321 5.395324 CCTCTGTCCCACAATATAAGAACGT 60.395 44.000 0.00 0.00 0.00 3.99
1601 2322 5.050490 CCTCTGTCCCACAATATAAGAACG 58.950 45.833 0.00 0.00 0.00 3.95
1602 2323 6.235231 TCCTCTGTCCCACAATATAAGAAC 57.765 41.667 0.00 0.00 0.00 3.01
1604 2325 5.964477 ACTTCCTCTGTCCCACAATATAAGA 59.036 40.000 0.00 0.00 0.00 2.10
1606 2327 6.901300 ACTACTTCCTCTGTCCCACAATATAA 59.099 38.462 0.00 0.00 0.00 0.98
1609 2330 4.684724 ACTACTTCCTCTGTCCCACAATA 58.315 43.478 0.00 0.00 0.00 1.90
1610 2331 3.521727 ACTACTTCCTCTGTCCCACAAT 58.478 45.455 0.00 0.00 0.00 2.71
1611 2332 2.972348 ACTACTTCCTCTGTCCCACAA 58.028 47.619 0.00 0.00 0.00 3.33
1615 2336 4.239428 AGTCTACTACTTCCTCTGTCCC 57.761 50.000 0.00 0.00 33.35 4.46
1617 2338 4.818005 GGCTAGTCTACTACTTCCTCTGTC 59.182 50.000 0.00 0.00 39.80 3.51
1619 2340 4.577283 GTGGCTAGTCTACTACTTCCTCTG 59.423 50.000 0.00 0.00 39.80 3.35
1621 2342 4.525024 TGTGGCTAGTCTACTACTTCCTC 58.475 47.826 0.00 0.00 39.80 3.71
1622 2343 4.018233 ACTGTGGCTAGTCTACTACTTCCT 60.018 45.833 0.00 0.00 39.80 3.36
1624 2345 4.096682 CCACTGTGGCTAGTCTACTACTTC 59.903 50.000 14.87 0.00 39.80 3.01
1625 2346 4.017808 CCACTGTGGCTAGTCTACTACTT 58.982 47.826 14.87 0.00 39.80 2.24
1626 2347 3.622630 CCACTGTGGCTAGTCTACTACT 58.377 50.000 14.87 0.00 42.62 2.57
1627 2348 2.688958 CCCACTGTGGCTAGTCTACTAC 59.311 54.545 21.47 0.00 35.79 2.73
1628 2349 3.014304 CCCACTGTGGCTAGTCTACTA 57.986 52.381 21.47 0.00 35.79 1.82
1629 2350 1.853963 CCCACTGTGGCTAGTCTACT 58.146 55.000 21.47 0.00 35.79 2.57
1639 2360 0.965363 GTAACATGGGCCCACTGTGG 60.965 60.000 31.51 20.01 37.25 4.17
1640 2361 0.038166 AGTAACATGGGCCCACTGTG 59.962 55.000 31.51 24.93 0.00 3.66
1641 2362 1.280998 GTAGTAACATGGGCCCACTGT 59.719 52.381 31.51 27.63 0.00 3.55
1642 2363 1.559682 AGTAGTAACATGGGCCCACTG 59.440 52.381 31.51 26.95 0.00 3.66
1644 2365 1.838077 AGAGTAGTAACATGGGCCCAC 59.162 52.381 31.51 14.94 0.00 4.61
1645 2366 2.263895 AGAGTAGTAACATGGGCCCA 57.736 50.000 30.92 30.92 0.00 5.36
1647 2368 4.957684 ACATAGAGTAGTAACATGGGCC 57.042 45.455 0.00 0.00 0.00 5.80
1648 2369 7.052142 AGTAACATAGAGTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
1649 2370 8.574737 GGTAGTAACATAGAGTAGTAACATGGG 58.425 40.741 0.00 0.00 0.00 4.00
1661 2382 7.830201 CCCCACTATAGAGGTAGTAACATAGAG 59.170 44.444 14.29 0.00 33.29 2.43
1662 2383 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
1663 2384 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
1664 2385 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
1666 2387 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
1667 2388 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
1668 2389 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
1669 2390 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
1670 2391 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
1671 2392 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
1672 2393 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
1673 2394 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
1674 2395 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
1675 2396 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
1677 2398 7.232737 TCACACATATGTTACTCCCCACTATAG 59.767 40.741 5.37 0.00 36.72 1.31
1680 2401 5.274015 TCACACATATGTTACTCCCCACTA 58.726 41.667 5.37 0.00 36.72 2.74
1681 2402 4.101114 TCACACATATGTTACTCCCCACT 58.899 43.478 5.37 0.00 36.72 4.00
1682 2403 4.481368 TCACACATATGTTACTCCCCAC 57.519 45.455 5.37 0.00 36.72 4.61
1683 2404 6.157123 TGTTATCACACATATGTTACTCCCCA 59.843 38.462 5.37 0.00 36.72 4.96
1684 2405 6.588204 TGTTATCACACATATGTTACTCCCC 58.412 40.000 5.37 0.00 36.72 4.81
1685 2406 7.307989 GCATGTTATCACACATATGTTACTCCC 60.308 40.741 5.37 0.00 36.72 4.30
1686 2407 7.226523 TGCATGTTATCACACATATGTTACTCC 59.773 37.037 5.37 0.00 36.72 3.85
1687 2408 8.141835 TGCATGTTATCACACATATGTTACTC 57.858 34.615 5.37 0.00 36.72 2.59
1688 2409 8.397906 GTTGCATGTTATCACACATATGTTACT 58.602 33.333 5.37 0.00 36.72 2.24
1689 2410 8.180920 TGTTGCATGTTATCACACATATGTTAC 58.819 33.333 5.37 0.00 36.72 2.50
1690 2411 8.180920 GTGTTGCATGTTATCACACATATGTTA 58.819 33.333 5.37 0.00 36.72 2.41
1691 2412 7.028962 GTGTTGCATGTTATCACACATATGTT 58.971 34.615 5.37 0.00 36.72 2.71
1692 2413 6.375174 AGTGTTGCATGTTATCACACATATGT 59.625 34.615 15.74 1.41 40.80 2.29
1693 2414 6.788243 AGTGTTGCATGTTATCACACATATG 58.212 36.000 15.74 0.00 35.51 1.78
1694 2415 7.121020 TGAAGTGTTGCATGTTATCACACATAT 59.879 33.333 15.74 4.04 35.51 1.78
1695 2416 6.429385 TGAAGTGTTGCATGTTATCACACATA 59.571 34.615 15.74 1.77 35.51 2.29
1696 2417 5.241285 TGAAGTGTTGCATGTTATCACACAT 59.759 36.000 15.74 5.81 37.93 3.21
1697 2418 4.578105 TGAAGTGTTGCATGTTATCACACA 59.422 37.500 15.74 0.00 35.03 3.72
1699 2420 5.963176 ATGAAGTGTTGCATGTTATCACA 57.037 34.783 12.61 0.00 37.31 3.58
1700 2421 8.915871 ATAAATGAAGTGTTGCATGTTATCAC 57.084 30.769 0.00 0.30 0.00 3.06
1704 2425 7.973388 GCCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
1705 2426 6.813152 GCCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
1707 2428 6.567050 AGCCTAATAAATGAAGTGTTGCATG 58.433 36.000 0.00 0.00 0.00 4.06
1709 2430 7.880160 ATAGCCTAATAAATGAAGTGTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
1720 2441 9.883142 GCAAGATGAGTCTATAGCCTAATAAAT 57.117 33.333 0.00 0.00 33.30 1.40
1721 2442 8.314751 GGCAAGATGAGTCTATAGCCTAATAAA 58.685 37.037 0.00 0.00 40.78 1.40
1722 2443 7.676043 AGGCAAGATGAGTCTATAGCCTAATAA 59.324 37.037 13.74 0.00 46.63 1.40
1723 2444 7.185565 AGGCAAGATGAGTCTATAGCCTAATA 58.814 38.462 13.74 0.00 46.63 0.98
1724 2445 6.022315 AGGCAAGATGAGTCTATAGCCTAAT 58.978 40.000 13.74 0.00 46.63 1.73
1725 2446 5.398236 AGGCAAGATGAGTCTATAGCCTAA 58.602 41.667 13.74 0.00 46.63 2.69
1727 2448 3.855668 AGGCAAGATGAGTCTATAGCCT 58.144 45.455 11.05 11.05 45.15 4.58
1728 2449 4.039730 TCAAGGCAAGATGAGTCTATAGCC 59.960 45.833 0.00 0.00 42.62 3.93
1729 2450 5.207110 TCAAGGCAAGATGAGTCTATAGC 57.793 43.478 0.00 0.00 33.30 2.97
1730 2451 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
1731 2452 8.309656 CACATATCAAGGCAAGATGAGTCTATA 58.690 37.037 2.43 0.00 33.30 1.31
1732 2453 7.160049 CACATATCAAGGCAAGATGAGTCTAT 58.840 38.462 2.43 0.00 33.30 1.98
1733 2454 6.098838 ACACATATCAAGGCAAGATGAGTCTA 59.901 38.462 2.43 0.00 33.30 2.59
1734 2455 5.104610 ACACATATCAAGGCAAGATGAGTCT 60.105 40.000 2.43 0.00 35.82 3.24
1735 2456 5.007430 CACACATATCAAGGCAAGATGAGTC 59.993 44.000 2.43 0.00 0.00 3.36
1736 2457 4.880120 CACACATATCAAGGCAAGATGAGT 59.120 41.667 2.43 0.00 0.00 3.41
1737 2458 5.121105 TCACACATATCAAGGCAAGATGAG 58.879 41.667 2.43 0.00 0.00 2.90
1738 2459 5.101648 TCACACATATCAAGGCAAGATGA 57.898 39.130 2.43 0.00 0.00 2.92
1739 2460 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
1740 2461 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
1741 2462 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
1742 2463 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
1743 2464 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
1745 2466 5.050769 CGAGTAACATCACACATATCAAGGC 60.051 44.000 0.00 0.00 0.00 4.35
1746 2467 6.042777 ACGAGTAACATCACACATATCAAGG 58.957 40.000 0.00 0.00 0.00 3.61
1747 2468 7.915923 AGTACGAGTAACATCACACATATCAAG 59.084 37.037 0.00 0.00 0.00 3.02
1748 2469 7.768240 AGTACGAGTAACATCACACATATCAA 58.232 34.615 0.00 0.00 0.00 2.57
1750 2471 8.557864 AGTAGTACGAGTAACATCACACATATC 58.442 37.037 0.00 0.00 0.00 1.63
1751 2472 8.447924 AGTAGTACGAGTAACATCACACATAT 57.552 34.615 0.00 0.00 0.00 1.78
1752 2473 7.854557 AGTAGTACGAGTAACATCACACATA 57.145 36.000 0.00 0.00 0.00 2.29
1753 2474 6.754702 AGTAGTACGAGTAACATCACACAT 57.245 37.500 0.00 0.00 0.00 3.21
1754 2475 7.671495 TTAGTAGTACGAGTAACATCACACA 57.329 36.000 0.00 0.00 0.00 3.72
1765 2486 9.995003 ACATAGCTAGTTATTAGTAGTACGAGT 57.005 33.333 0.00 0.00 31.14 4.18
1790 2511 6.223852 TGAAGAAAGAGAGACATGTGGTAAC 58.776 40.000 1.15 0.00 0.00 2.50
1791 2512 6.419484 TGAAGAAAGAGAGACATGTGGTAA 57.581 37.500 1.15 0.00 0.00 2.85
1792 2513 6.611613 ATGAAGAAAGAGAGACATGTGGTA 57.388 37.500 1.15 0.00 0.00 3.25
1795 2516 9.770503 CAATAAATGAAGAAAGAGAGACATGTG 57.229 33.333 1.15 0.00 0.00 3.21
1797 2518 8.675504 AGCAATAAATGAAGAAAGAGAGACATG 58.324 33.333 0.00 0.00 0.00 3.21
1798 2519 8.804912 AGCAATAAATGAAGAAAGAGAGACAT 57.195 30.769 0.00 0.00 0.00 3.06
1799 2520 8.509690 CAAGCAATAAATGAAGAAAGAGAGACA 58.490 33.333 0.00 0.00 0.00 3.41
1800 2521 8.510505 ACAAGCAATAAATGAAGAAAGAGAGAC 58.489 33.333 0.00 0.00 0.00 3.36
1801 2522 8.627208 ACAAGCAATAAATGAAGAAAGAGAGA 57.373 30.769 0.00 0.00 0.00 3.10
1802 2523 8.509690 TGACAAGCAATAAATGAAGAAAGAGAG 58.490 33.333 0.00 0.00 0.00 3.20
1803 2524 8.292448 GTGACAAGCAATAAATGAAGAAAGAGA 58.708 33.333 0.00 0.00 0.00 3.10
1804 2525 8.077991 TGTGACAAGCAATAAATGAAGAAAGAG 58.922 33.333 0.00 0.00 0.00 2.85
1805 2526 7.939782 TGTGACAAGCAATAAATGAAGAAAGA 58.060 30.769 0.00 0.00 0.00 2.52
1806 2527 8.752766 ATGTGACAAGCAATAAATGAAGAAAG 57.247 30.769 0.00 0.00 0.00 2.62
1807 2528 8.358895 TGATGTGACAAGCAATAAATGAAGAAA 58.641 29.630 0.00 0.00 0.00 2.52
1809 2530 7.451501 TGATGTGACAAGCAATAAATGAAGA 57.548 32.000 0.00 0.00 0.00 2.87
1811 2532 8.058667 AGATGATGTGACAAGCAATAAATGAA 57.941 30.769 0.00 0.00 0.00 2.57
1812 2533 7.634671 AGATGATGTGACAAGCAATAAATGA 57.365 32.000 0.00 0.00 0.00 2.57
1813 2534 9.961265 AATAGATGATGTGACAAGCAATAAATG 57.039 29.630 0.00 0.00 0.00 2.32
1819 2540 9.399797 AGATAAAATAGATGATGTGACAAGCAA 57.600 29.630 0.00 0.00 0.00 3.91
1820 2541 8.969260 AGATAAAATAGATGATGTGACAAGCA 57.031 30.769 0.00 0.00 0.00 3.91
1851 2572 9.850628 GAGTAACATTAGTAGTAACATCACACA 57.149 33.333 0.00 0.00 0.00 3.72
1852 2573 9.298774 GGAGTAACATTAGTAGTAACATCACAC 57.701 37.037 0.00 0.00 0.00 3.82
1854 2575 8.472413 TGGGAGTAACATTAGTAGTAACATCAC 58.528 37.037 0.00 0.00 0.00 3.06
1855 2576 8.472413 GTGGGAGTAACATTAGTAGTAACATCA 58.528 37.037 0.00 0.00 0.00 3.07
1856 2577 8.693625 AGTGGGAGTAACATTAGTAGTAACATC 58.306 37.037 0.00 0.00 0.00 3.06
1857 2578 8.475639 CAGTGGGAGTAACATTAGTAGTAACAT 58.524 37.037 0.00 0.00 0.00 2.71
1860 2581 7.093640 CCACAGTGGGAGTAACATTAGTAGTAA 60.094 40.741 12.40 0.00 32.67 2.24
1861 2582 6.379133 CCACAGTGGGAGTAACATTAGTAGTA 59.621 42.308 12.40 0.00 32.67 1.82
1862 2583 5.187186 CCACAGTGGGAGTAACATTAGTAGT 59.813 44.000 12.40 0.00 32.67 2.73
1864 2585 5.670792 CCACAGTGGGAGTAACATTAGTA 57.329 43.478 12.40 0.00 32.67 1.82
1879 2600 1.005394 GGTACGACCACCCACAGTG 60.005 63.158 0.00 0.00 46.83 3.66
1880 2601 1.458020 TGGTACGACCACCCACAGT 60.458 57.895 3.02 0.00 44.79 3.55
1881 2602 1.292223 CTGGTACGACCACCCACAG 59.708 63.158 3.02 0.00 44.79 3.66
1882 2603 0.178967 TACTGGTACGACCACCCACA 60.179 55.000 3.02 0.00 44.79 4.17
1883 2604 0.968405 TTACTGGTACGACCACCCAC 59.032 55.000 3.02 0.00 44.79 4.61
1885 2606 2.027837 ACAATTACTGGTACGACCACCC 60.028 50.000 3.02 0.00 44.79 4.61
1886 2607 3.323751 ACAATTACTGGTACGACCACC 57.676 47.619 3.02 1.31 44.79 4.61
1887 2608 7.031226 TCTATACAATTACTGGTACGACCAC 57.969 40.000 3.02 0.00 44.79 4.16
1889 2610 8.355169 TGAATCTATACAATTACTGGTACGACC 58.645 37.037 0.00 0.00 39.22 4.79
1901 2622 9.872684 AAGGATGACCATTGAATCTATACAATT 57.127 29.630 0.00 0.00 38.94 2.32
1915 2640 2.776536 CCTGGAGAGAAGGATGACCATT 59.223 50.000 0.00 0.00 36.91 3.16
1920 2645 1.362584 TGTCCCTGGAGAGAAGGATGA 59.637 52.381 0.00 0.00 36.91 2.92
1921 2646 1.871418 TGTCCCTGGAGAGAAGGATG 58.129 55.000 0.00 0.00 36.91 3.51
1978 2992 7.148052 GGGCATACATGTCTACTATACCACTAG 60.148 44.444 0.00 0.00 31.84 2.57
2140 3164 0.538584 GGGTAGGGTTAACTCCGGTG 59.461 60.000 0.61 0.00 0.00 4.94
2238 3262 8.560903 ATTCAGTTTTTGGGAATAGAGGATACT 58.439 33.333 0.00 0.00 38.54 2.12
2257 3281 7.965718 TCTTCCCATGAAAAATTGATTCAGTT 58.034 30.769 11.30 0.00 39.92 3.16
2262 3286 7.169591 TGCATTCTTCCCATGAAAAATTGATT 58.830 30.769 0.00 0.00 0.00 2.57
2281 3306 3.515330 AAGCCTTGTAGCAATGCATTC 57.485 42.857 9.53 4.91 34.23 2.67
2298 3323 4.079253 TGTTAGACCCATCTCCAAAAAGC 58.921 43.478 0.00 0.00 36.29 3.51
2333 3549 9.288576 TCTCAAGCCAGATTAAATATGGTATTG 57.711 33.333 12.58 12.58 43.48 1.90
2435 3652 4.065321 TGTTATTGCACCCCAACAAAAG 57.935 40.909 0.00 0.00 35.99 2.27
2497 3714 3.195610 ACAACTAGATGATTCCTCACGCA 59.804 43.478 7.05 0.00 33.22 5.24
2533 3750 7.865706 ACAACCATACTTCCAAGATATTGTC 57.134 36.000 0.00 0.00 0.00 3.18
2565 3782 5.679601 AGCATTCTTAGGACTCCAAGATTC 58.320 41.667 9.48 4.61 31.15 2.52
2606 3825 6.007703 CCACCACAAAAGGAGTTATTTAGGA 58.992 40.000 0.00 0.00 0.00 2.94
2619 3838 4.526650 AGTTATTTAGCCCCACCACAAAAG 59.473 41.667 0.00 0.00 0.00 2.27
2624 3843 6.785337 AAATAAGTTATTTAGCCCCACCAC 57.215 37.500 17.40 0.00 36.66 4.16
2627 3846 8.741841 TGTGTAAAATAAGTTATTTAGCCCCAC 58.258 33.333 18.83 18.16 37.39 4.61
2628 3847 8.880991 TGTGTAAAATAAGTTATTTAGCCCCA 57.119 30.769 18.83 10.74 37.39 4.96
2686 8364 3.658757 ATTGGTCACAATTGGGAAACG 57.341 42.857 13.07 0.00 44.69 3.60
2779 8465 5.877564 TGTTTTTGAAAAGGGCTTACTTTGG 59.122 36.000 3.12 0.00 40.36 3.28
2780 8466 6.976636 TGTTTTTGAAAAGGGCTTACTTTG 57.023 33.333 3.12 0.00 40.36 2.77
2870 8568 4.329462 TGGTTTTAGGCCACAATTTGAC 57.671 40.909 5.01 0.00 0.00 3.18
2871 8569 5.359194 TTTGGTTTTAGGCCACAATTTGA 57.641 34.783 5.01 0.00 35.46 2.69
2883 8582 5.817296 GGTACTACGGGGTATTTGGTTTTAG 59.183 44.000 0.00 0.00 0.00 1.85
2975 8687 9.699410 ACATGGAAGAAATATGGAGTAATTTCA 57.301 29.630 9.66 0.00 35.96 2.69
3012 9677 4.397417 GCCAAGCATATTTCTTGACTGAGT 59.603 41.667 13.40 0.00 42.52 3.41
3019 9684 3.444916 CTGCAGCCAAGCATATTTCTTG 58.555 45.455 0.00 7.27 44.68 3.02
3026 9691 1.273048 CAAAACCTGCAGCCAAGCATA 59.727 47.619 8.66 0.00 44.68 3.14
3028 9693 1.442567 CAAAACCTGCAGCCAAGCA 59.557 52.632 8.66 0.00 43.35 3.91
3029 9694 1.301165 CCAAAACCTGCAGCCAAGC 60.301 57.895 8.66 0.00 0.00 4.01
3034 9699 0.972471 ATAGGCCCAAAACCTGCAGC 60.972 55.000 8.66 0.00 38.26 5.25
3122 10020 2.031333 GGAAGCTTGTGTCTTTCAGCTG 60.031 50.000 7.63 7.63 32.56 4.24
3145 10043 3.942748 CCACGACTAGAGCTAAGAAGACT 59.057 47.826 0.00 0.00 0.00 3.24
3264 10167 5.401531 TGTTATCTCAGTACGCTCCTTTT 57.598 39.130 0.00 0.00 0.00 2.27
3645 10975 3.015145 CCCACCCTCCAATCCGGT 61.015 66.667 0.00 0.00 35.57 5.28
3699 11029 2.036958 TCATGTAAACCGCCCATGAG 57.963 50.000 0.00 0.00 39.87 2.90
3708 11038 1.282157 ACCTCCTGCCTCATGTAAACC 59.718 52.381 0.00 0.00 0.00 3.27
3711 11041 1.951209 TCACCTCCTGCCTCATGTAA 58.049 50.000 0.00 0.00 0.00 2.41
3794 11124 1.078709 CAGTGCCTCGGTGTACATTG 58.921 55.000 0.00 0.00 0.00 2.82
3815 11152 5.118990 TCTTACTGAATGCATACAAGAGGC 58.881 41.667 0.00 0.00 34.64 4.70
3871 11215 2.946947 AGCGTACCAAAGCTGCAAT 58.053 47.368 1.02 0.00 42.82 3.56
3926 11280 0.391130 GTGCCAGGCTGATCACGTAA 60.391 55.000 17.94 0.00 0.00 3.18
4085 11454 0.744414 AGTGACAAGTGCAGTGCGTT 60.744 50.000 11.20 3.48 0.00 4.84
4101 11470 3.119602 CCATCAGTCCAAGCAATTGAGTG 60.120 47.826 10.34 5.73 0.00 3.51
4125 11497 2.958355 CCGCCAGAAACCCATCAAATAT 59.042 45.455 0.00 0.00 0.00 1.28
4449 11821 6.470877 CGCCGTTTGTTAACAATTAGCATTAT 59.529 34.615 21.17 0.00 35.55 1.28
4454 11826 3.812656 TCGCCGTTTGTTAACAATTAGC 58.187 40.909 21.17 20.06 35.55 3.09
4511 11887 1.331214 AATCCTGTTTGGGTGCACAG 58.669 50.000 20.43 5.95 40.23 3.66
4619 11996 4.674623 GCAAAGATCTTGTCCAGATGCAAG 60.675 45.833 17.17 0.00 42.92 4.01
4625 12002 3.072915 TCTTGGCAAAGATCTTGTCCAGA 59.927 43.478 21.23 18.27 37.51 3.86
4640 12017 0.827089 CACACCAACCCATCTTGGCA 60.827 55.000 0.00 0.00 44.19 4.92
4766 12149 2.482142 CCTTATCAGGTCGAAGCAGGTC 60.482 54.545 0.00 0.00 35.06 3.85
4844 12227 8.724229 GGACGTTAGCCTCTTTTCTTAAATAAA 58.276 33.333 0.00 0.00 0.00 1.40
4847 12230 5.350640 CGGACGTTAGCCTCTTTTCTTAAAT 59.649 40.000 0.00 0.00 0.00 1.40
4851 12234 2.612221 CCGGACGTTAGCCTCTTTTCTT 60.612 50.000 0.00 0.00 0.00 2.52
4852 12235 1.067071 CCGGACGTTAGCCTCTTTTCT 60.067 52.381 0.00 0.00 0.00 2.52
4853 12236 1.356938 CCGGACGTTAGCCTCTTTTC 58.643 55.000 0.00 0.00 0.00 2.29
4854 12237 0.672711 GCCGGACGTTAGCCTCTTTT 60.673 55.000 5.05 0.00 0.00 2.27
4855 12238 1.079336 GCCGGACGTTAGCCTCTTT 60.079 57.895 5.05 0.00 0.00 2.52
4856 12239 1.542187 AAGCCGGACGTTAGCCTCTT 61.542 55.000 5.05 0.00 0.00 2.85
4857 12240 1.542187 AAAGCCGGACGTTAGCCTCT 61.542 55.000 5.05 0.00 0.00 3.69
4858 12241 0.174162 TAAAGCCGGACGTTAGCCTC 59.826 55.000 5.05 0.00 0.00 4.70
4859 12242 0.609662 TTAAAGCCGGACGTTAGCCT 59.390 50.000 5.05 0.00 0.00 4.58
4860 12243 1.441738 TTTAAAGCCGGACGTTAGCC 58.558 50.000 5.05 0.00 0.00 3.93
4864 12264 5.883503 TCATTAATTTAAAGCCGGACGTT 57.116 34.783 5.05 3.76 0.00 3.99
4918 12321 5.734855 TGTTTCTCTTACTTTGTGCTGTC 57.265 39.130 0.00 0.00 0.00 3.51
4933 12355 0.320771 TCTTGCCGGAGCTGTTTCTC 60.321 55.000 5.05 0.00 40.80 2.87
4939 12361 1.000283 CTAGGTATCTTGCCGGAGCTG 60.000 57.143 5.05 0.00 40.80 4.24
4962 12384 0.101399 CTATGTCGCTGCTTCTCGGT 59.899 55.000 0.00 0.00 0.00 4.69
4992 12414 3.840666 AGGCTCCAATGTCTCACTTTCTA 59.159 43.478 0.00 0.00 0.00 2.10
5127 12559 2.447714 GCTGGGGGATCCTGAGGAC 61.448 68.421 12.58 0.00 36.68 3.85
5260 12696 1.064458 GGAGCTAGGTTCGACGAGC 59.936 63.158 2.72 2.72 35.07 5.03
5471 12913 1.281867 GAGTGACCCCATTCACCATGA 59.718 52.381 0.00 0.00 46.14 3.07
5490 12932 0.608130 CCTTGGAGGTGTCATCGTGA 59.392 55.000 0.00 0.00 0.00 4.35
5514 12956 2.143008 AGCGATGTTGTGTGTCGTTA 57.857 45.000 0.00 0.00 37.66 3.18
5540 12989 1.004918 GCCTAACTGTGTCGGTGCT 60.005 57.895 0.00 0.00 0.00 4.40
5567 13018 1.251527 TGAAGGTCGAGTCCTGAGCC 61.252 60.000 0.00 0.00 37.93 4.70
5600 13051 2.173356 CTGGCCATGGTTCTTGGATCTA 59.827 50.000 14.67 0.00 36.26 1.98
5609 13060 3.291611 CTTGGCTGGCCATGGTTC 58.708 61.111 15.41 6.95 46.64 3.62
5628 13079 1.134226 CGGGTGTCGTGTGTAACTTC 58.866 55.000 0.00 0.00 38.04 3.01
5648 13099 0.874607 CGCTACCACGTGCCCTATTC 60.875 60.000 10.91 0.00 0.00 1.75
5651 13102 1.940883 CTTCGCTACCACGTGCCCTA 61.941 60.000 10.91 0.00 0.00 3.53
5653 13104 2.813908 CTTCGCTACCACGTGCCC 60.814 66.667 10.91 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.