Multiple sequence alignment - TraesCS7D01G364000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G364000 chr7D 100.000 9829 0 0 1 9829 468520398 468510570 0.000000e+00 18151.0
1 TraesCS7D01G364000 chr7D 87.613 331 30 9 3262 3581 169966627 169966957 3.350000e-99 374.0
2 TraesCS7D01G364000 chr7D 96.970 66 2 0 7372 7437 381910122 381910057 2.900000e-20 111.0
3 TraesCS7D01G364000 chr7D 100.000 47 0 0 7506 7552 203520306 203520260 4.890000e-13 87.9
4 TraesCS7D01G364000 chr7B 97.958 4015 38 8 3313 7298 491925600 491921601 0.000000e+00 6920.0
5 TraesCS7D01G364000 chr7B 96.603 2738 37 23 612 3323 491929900 491927193 0.000000e+00 4490.0
6 TraesCS7D01G364000 chr7B 97.940 2281 35 3 7553 9829 491921598 491919326 0.000000e+00 3941.0
7 TraesCS7D01G364000 chr7B 85.324 586 59 17 1 580 491930462 491929898 1.840000e-161 580.0
8 TraesCS7D01G364000 chr7B 88.379 327 31 4 3262 3582 135771156 135771481 4.310000e-103 387.0
9 TraesCS7D01G364000 chr7B 82.370 346 35 10 3229 3564 453939762 453940091 2.700000e-70 278.0
10 TraesCS7D01G364000 chr7A 89.016 3760 234 60 1 3666 532464810 532468484 0.000000e+00 4490.0
11 TraesCS7D01G364000 chr7A 90.101 2576 141 37 4769 7295 532469760 532472270 0.000000e+00 3240.0
12 TraesCS7D01G364000 chr7A 92.552 1893 95 26 7553 9407 532472280 532474164 0.000000e+00 2673.0
13 TraesCS7D01G364000 chr7A 93.470 1118 37 13 3665 4771 532468589 532469681 0.000000e+00 1628.0
14 TraesCS7D01G364000 chr7A 88.889 153 14 3 3432 3582 172595394 172595545 1.690000e-42 185.0
15 TraesCS7D01G364000 chr7A 93.478 46 3 0 3262 3307 172595351 172595396 1.770000e-07 69.4
16 TraesCS7D01G364000 chr5B 88.022 359 34 6 3229 3580 531596248 531595892 5.490000e-112 416.0
17 TraesCS7D01G364000 chr5B 83.333 348 48 7 1947 2290 9414871 9415212 7.410000e-81 313.0
18 TraesCS7D01G364000 chr5B 98.718 78 1 0 7428 7505 713025991 713025914 1.330000e-28 139.0
19 TraesCS7D01G364000 chr5B 80.723 166 28 4 1945 2107 289162596 289162432 1.040000e-24 126.0
20 TraesCS7D01G364000 chr5B 100.000 60 0 0 7372 7431 34148395 34148454 2.900000e-20 111.0
21 TraesCS7D01G364000 chr5B 100.000 47 0 0 7506 7552 533070736 533070690 4.890000e-13 87.9
22 TraesCS7D01G364000 chr1B 87.467 375 29 12 1973 2343 198640303 198640663 5.490000e-112 416.0
23 TraesCS7D01G364000 chr1B 100.000 78 0 0 7428 7505 53331403 53331480 2.860000e-30 145.0
24 TraesCS7D01G364000 chr1B 98.718 78 1 0 7428 7505 285997924 285997847 1.330000e-28 139.0
25 TraesCS7D01G364000 chr1A 85.912 362 36 9 1964 2319 150893163 150893515 1.210000e-98 372.0
26 TraesCS7D01G364000 chr3D 84.726 347 42 7 3229 3568 537963514 537963856 4.400000e-88 337.0
27 TraesCS7D01G364000 chr3D 96.970 66 2 0 7372 7437 399811720 399811655 2.900000e-20 111.0
28 TraesCS7D01G364000 chr3D 80.916 131 24 1 6304 6433 294735873 294736003 1.750000e-17 102.0
29 TraesCS7D01G364000 chr3D 100.000 47 0 0 7506 7552 501928981 501929027 4.890000e-13 87.9
30 TraesCS7D01G364000 chr3D 100.000 47 0 0 7506 7552 607293433 607293387 4.890000e-13 87.9
31 TraesCS7D01G364000 chr1D 86.242 298 30 7 2044 2339 140049280 140048992 7.410000e-81 313.0
32 TraesCS7D01G364000 chr1D 77.985 268 43 9 3266 3529 474923675 474923930 4.750000e-33 154.0
33 TraesCS7D01G364000 chr1D 98.718 78 1 0 7428 7505 141321663 141321586 1.330000e-28 139.0
34 TraesCS7D01G364000 chr1D 100.000 75 0 0 7299 7373 141338870 141338944 1.330000e-28 139.0
35 TraesCS7D01G364000 chr1D 100.000 47 0 0 7506 7552 298782430 298782476 4.890000e-13 87.9
36 TraesCS7D01G364000 chr5D 83.942 274 29 9 3232 3497 525371452 525371186 2.120000e-61 248.0
37 TraesCS7D01G364000 chr5D 82.424 165 26 3 1945 2107 255577495 255577332 3.700000e-29 141.0
38 TraesCS7D01G364000 chr5D 79.200 125 20 5 3463 3583 523449207 523449085 2.280000e-11 82.4
39 TraesCS7D01G364000 chr6D 76.430 437 88 12 6296 6720 186546169 186546602 1.280000e-53 222.0
40 TraesCS7D01G364000 chr6D 89.630 135 14 0 5281 5415 186545308 186545442 1.310000e-38 172.0
41 TraesCS7D01G364000 chr6D 100.000 75 0 0 7299 7373 108475672 108475598 1.330000e-28 139.0
42 TraesCS7D01G364000 chr6D 95.652 69 3 0 7372 7440 124507668 124507600 2.900000e-20 111.0
43 TraesCS7D01G364000 chr6D 100.000 60 0 0 7372 7431 283232362 283232421 2.900000e-20 111.0
44 TraesCS7D01G364000 chr6A 76.389 432 87 13 6296 6715 224616160 224615732 1.660000e-52 219.0
45 TraesCS7D01G364000 chr6A 90.698 129 12 0 5287 5415 224617068 224616940 1.310000e-38 172.0
46 TraesCS7D01G364000 chr6A 100.000 75 0 0 7299 7373 375814765 375814691 1.330000e-28 139.0
47 TraesCS7D01G364000 chr6A 98.718 78 1 0 7428 7505 608894020 608893943 1.330000e-28 139.0
48 TraesCS7D01G364000 chr6A 96.970 66 2 0 7372 7437 413567805 413567740 2.900000e-20 111.0
49 TraesCS7D01G364000 chr6B 78.767 292 55 6 2608 2894 298286809 298287098 1.300000e-43 189.0
50 TraesCS7D01G364000 chr6B 85.714 140 18 2 6582 6720 298292120 298292258 7.960000e-31 147.0
51 TraesCS7D01G364000 chr2A 100.000 76 0 0 7298 7373 563281465 563281540 3.700000e-29 141.0
52 TraesCS7D01G364000 chrUn 100.000 75 0 0 7299 7373 67965829 67965755 1.330000e-28 139.0
53 TraesCS7D01G364000 chrUn 98.718 78 1 0 7428 7505 189392476 189392553 1.330000e-28 139.0
54 TraesCS7D01G364000 chrUn 100.000 75 0 0 7299 7373 392072649 392072575 1.330000e-28 139.0
55 TraesCS7D01G364000 chrUn 100.000 75 0 0 7299 7373 441748760 441748834 1.330000e-28 139.0
56 TraesCS7D01G364000 chr4D 98.718 78 1 0 7428 7505 123412830 123412907 1.330000e-28 139.0
57 TraesCS7D01G364000 chr4D 98.718 78 1 0 7428 7505 241050562 241050639 1.330000e-28 139.0
58 TraesCS7D01G364000 chr4D 100.000 75 0 0 7299 7373 490531849 490531775 1.330000e-28 139.0
59 TraesCS7D01G364000 chr4D 85.470 117 13 3 1952 2066 504523234 504523120 1.730000e-22 119.0
60 TraesCS7D01G364000 chr4D 96.970 66 2 0 7372 7437 123293860 123293795 2.900000e-20 111.0
61 TraesCS7D01G364000 chr4D 96.970 66 2 0 7372 7437 123325617 123325552 2.900000e-20 111.0
62 TraesCS7D01G364000 chr4D 100.000 47 0 0 7506 7552 123721331 123721285 4.890000e-13 87.9
63 TraesCS7D01G364000 chr4A 98.718 78 1 0 7428 7505 67587594 67587517 1.330000e-28 139.0
64 TraesCS7D01G364000 chr4A 100.000 60 0 0 7372 7431 246667789 246667848 2.900000e-20 111.0
65 TraesCS7D01G364000 chr4A 100.000 47 0 0 7506 7552 295233156 295233202 4.890000e-13 87.9
66 TraesCS7D01G364000 chr4A 100.000 47 0 0 7506 7552 295279213 295279167 4.890000e-13 87.9
67 TraesCS7D01G364000 chr2D 100.000 75 0 0 7299 7373 635000835 635000761 1.330000e-28 139.0
68 TraesCS7D01G364000 chr3B 80.892 157 27 3 1944 2098 131061246 131061401 4.820000e-23 121.0
69 TraesCS7D01G364000 chr3B 80.153 131 25 1 6304 6433 389042358 389042488 8.130000e-16 97.1
70 TraesCS7D01G364000 chr3A 83.178 107 17 1 6304 6409 390014141 390014247 8.130000e-16 97.1
71 TraesCS7D01G364000 chr4B 100.000 47 0 0 7506 7552 159076984 159076938 4.890000e-13 87.9
72 TraesCS7D01G364000 chr5A 90.566 53 5 0 2238 2290 7602757 7602809 4.930000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G364000 chr7D 468510570 468520398 9828 True 18151.00 18151 100.00000 1 9829 1 chr7D.!!$R3 9828
1 TraesCS7D01G364000 chr7B 491919326 491930462 11136 True 3982.75 6920 94.45625 1 9829 4 chr7B.!!$R1 9828
2 TraesCS7D01G364000 chr7A 532464810 532474164 9354 False 3007.75 4490 91.28475 1 9407 4 chr7A.!!$F2 9406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 523 2.168521 TCAGGTCGAATGGCTTCCTTAG 59.831 50.000 0.00 0.00 0.00 2.18 F
1267 1310 2.365105 TGTGGGGATCGGGAGGAC 60.365 66.667 0.00 0.00 0.00 3.85 F
1557 1601 0.464452 CGGTCTTAGGTTAGGGCCTG 59.536 60.000 18.53 0.00 39.60 4.85 F
2084 2131 1.202639 TGCTAGCGTGGATATTGGGTG 60.203 52.381 10.77 0.00 0.00 4.61 F
2160 2207 2.972505 GTGTGTGGGACTGTGGCG 60.973 66.667 0.00 0.00 0.00 5.69 F
3452 5142 2.865079 TCAATTTAAAGGCCACGTGGA 58.135 42.857 38.30 15.88 37.39 4.02 F
5469 7390 4.343526 TGCAACATGGTAAATTGACTTGGT 59.656 37.500 0.00 0.00 0.00 3.67 F
7523 9485 0.032615 TGGTTGGTATGGCCCAATCC 60.033 55.000 0.00 2.56 45.79 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1601 0.536006 AGCTGAAGCCTTGTGTGACC 60.536 55.000 0.00 0.0 43.38 4.02 R
2243 2290 1.142060 CAGAACAACCCACACCCTACA 59.858 52.381 0.00 0.0 0.00 2.74 R
3166 3246 5.745227 CAAGAGATCTTAAAAGGCACCCTA 58.255 41.667 0.00 0.0 34.28 3.53 R
3327 5010 8.762645 CAATATAGATTCTATAGAGTTGGGCCA 58.237 37.037 16.44 0.0 0.00 5.36 R
4729 6560 3.717707 TGAGTGACACAAGCAGTACTTC 58.282 45.455 8.59 0.0 36.04 3.01 R
5785 7718 4.634883 GCCTTCATCTGCTATGTCATATGG 59.365 45.833 2.13 0.0 0.00 2.74 R
7550 9512 0.035056 ACCAACTAGCAGGCATCACC 60.035 55.000 1.13 0.0 39.61 4.02 R
9461 11461 0.331616 GTTGGGCCTGTCCAATACCT 59.668 55.000 6.48 0.0 46.97 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 197 5.344743 GGATCTATCCAAACACTGACTCA 57.655 43.478 4.04 0.00 46.38 3.41
262 269 5.943416 CCATGGACACCTCTAACATAAACAA 59.057 40.000 5.56 0.00 0.00 2.83
267 274 7.156673 GGACACCTCTAACATAAACAACTACA 58.843 38.462 0.00 0.00 0.00 2.74
460 467 9.807649 GGCTATGAAATCATGTTTTACAAGATT 57.192 29.630 6.17 4.88 45.13 2.40
510 517 3.483954 CCATCAGGTCGAATGGCTT 57.516 52.632 1.01 0.00 0.00 4.35
516 523 2.168521 TCAGGTCGAATGGCTTCCTTAG 59.831 50.000 0.00 0.00 0.00 2.18
544 551 3.582208 GGATCTATCCAGACATTGCCTCT 59.418 47.826 4.04 0.00 46.38 3.69
583 590 3.796764 AGCCCTAATGAGCTTGAGC 57.203 52.632 0.00 0.00 35.22 4.26
601 608 7.593825 GCTTGAGCTTCTTAATTTTTCTACCA 58.406 34.615 0.00 0.00 38.21 3.25
603 610 9.565213 CTTGAGCTTCTTAATTTTTCTACCATG 57.435 33.333 0.00 0.00 0.00 3.66
604 611 8.055279 TGAGCTTCTTAATTTTTCTACCATGG 57.945 34.615 11.19 11.19 0.00 3.66
606 613 6.042777 GCTTCTTAATTTTTCTACCATGGGC 58.957 40.000 18.09 0.00 0.00 5.36
607 614 6.350949 GCTTCTTAATTTTTCTACCATGGGCA 60.351 38.462 18.09 1.99 0.00 5.36
608 615 6.524101 TCTTAATTTTTCTACCATGGGCAC 57.476 37.500 18.09 0.00 0.00 5.01
631 638 7.173390 GCACCTCTTCTAACATAAACAACTCTT 59.827 37.037 0.00 0.00 0.00 2.85
708 721 8.383175 ACCTTTTACCATGTCAGATAGAGAAAA 58.617 33.333 0.00 0.00 0.00 2.29
709 722 9.401058 CCTTTTACCATGTCAGATAGAGAAAAT 57.599 33.333 0.00 0.00 0.00 1.82
807 821 3.941483 GAGACAGAGACAGAGAAGAGAGG 59.059 52.174 0.00 0.00 0.00 3.69
1208 1251 3.792053 ATCCGCTCGATTCGTGGGC 62.792 63.158 16.74 13.06 33.31 5.36
1267 1310 2.365105 TGTGGGGATCGGGAGGAC 60.365 66.667 0.00 0.00 0.00 3.85
1557 1601 0.464452 CGGTCTTAGGTTAGGGCCTG 59.536 60.000 18.53 0.00 39.60 4.85
1842 1887 2.133281 TTGCATTGGCTCATAGTGCT 57.867 45.000 0.00 0.00 41.91 4.40
1862 1907 6.703165 AGTGCTTTTGATCTTTTGTTGGATTC 59.297 34.615 0.00 0.00 0.00 2.52
1987 2034 5.699001 TGCACGTTAATATTAGGCCATGTAG 59.301 40.000 5.01 0.00 0.00 2.74
2084 2131 1.202639 TGCTAGCGTGGATATTGGGTG 60.203 52.381 10.77 0.00 0.00 4.61
2160 2207 2.972505 GTGTGTGGGACTGTGGCG 60.973 66.667 0.00 0.00 0.00 5.69
2318 2366 7.159372 AGAAGAATTGGAACTCGCTACTTTTA 58.841 34.615 0.00 0.00 0.00 1.52
3027 3107 8.445275 AATATCCGTGCTGTTTCATTTGTATA 57.555 30.769 0.00 0.00 0.00 1.47
3166 3246 5.163301 ACGATCAAATACTGGAAGGTATGCT 60.163 40.000 0.00 0.00 39.30 3.79
3452 5142 2.865079 TCAATTTAAAGGCCACGTGGA 58.135 42.857 38.30 15.88 37.39 4.02
3555 5247 9.199982 CATATCCAATGGCTGATTCAAATTTAC 57.800 33.333 0.00 0.00 0.00 2.01
3634 5347 7.967854 TGAACTGTATATTTGTTGCAGTAATGC 59.032 33.333 8.51 8.51 39.19 3.56
4197 6021 5.287674 AGTGCATGAAGCTGACACTATAT 57.712 39.130 0.00 0.00 45.94 0.86
4198 6022 6.410942 AGTGCATGAAGCTGACACTATATA 57.589 37.500 0.00 0.00 45.94 0.86
4861 6780 7.359514 CCACTCAACATGTATGCATATCTTACG 60.360 40.741 10.16 0.00 33.30 3.18
5185 7106 9.814507 TTTTTGTATTGCTACAGTGTTATAACG 57.185 29.630 10.92 0.00 39.00 3.18
5469 7390 4.343526 TGCAACATGGTAAATTGACTTGGT 59.656 37.500 0.00 0.00 0.00 3.67
5773 7706 7.289549 TGATGAAATATATCATTGCCACCCAAA 59.710 33.333 0.00 0.00 40.08 3.28
5785 7718 2.623416 GCCACCCAAAAGCTATGGATAC 59.377 50.000 17.80 3.43 40.56 2.24
5814 7747 1.683943 TAGCAGATGAAGGCCATTGC 58.316 50.000 5.01 0.00 38.44 3.56
5893 7826 2.761767 TCCGTATAGTGTGGCAGCTTAA 59.238 45.455 0.00 0.00 0.00 1.85
5980 7913 8.340618 TGCTGAGCTGATAAAAGTTATTCTTT 57.659 30.769 5.83 0.00 46.86 2.52
6451 8409 8.624776 CATTCCAAGATGTTAGTAATTTCTCCC 58.375 37.037 0.00 0.00 0.00 4.30
6728 8689 5.468746 TCAAAGTATGTTACTGCCTTCACAC 59.531 40.000 0.00 0.00 39.39 3.82
6729 8690 3.939066 AGTATGTTACTGCCTTCACACC 58.061 45.455 0.00 0.00 37.69 4.16
6761 8722 6.868864 TCTCAGTGTTCTTATGTAGCTGTTTC 59.131 38.462 0.00 0.00 0.00 2.78
6839 8800 4.520874 TGTTTTGTCACTGTTCCAAGTCAA 59.479 37.500 0.00 0.00 0.00 3.18
7043 9005 2.093783 CCCTTTTTCTCGTACACGCATC 59.906 50.000 0.00 0.00 39.60 3.91
7295 9257 4.539726 TCTAGCCCCATTACGAGAGTTAA 58.460 43.478 0.00 0.00 46.40 2.01
7296 9258 3.538634 AGCCCCATTACGAGAGTTAAC 57.461 47.619 0.00 0.00 46.40 2.01
7299 9261 4.341520 AGCCCCATTACGAGAGTTAACTAG 59.658 45.833 8.42 5.92 46.40 2.57
7300 9262 4.099113 GCCCCATTACGAGAGTTAACTAGT 59.901 45.833 8.42 11.46 46.40 2.57
7302 9264 6.637657 CCCCATTACGAGAGTTAACTAGTTT 58.362 40.000 14.49 0.00 46.40 2.66
7303 9265 7.101700 CCCCATTACGAGAGTTAACTAGTTTT 58.898 38.462 14.49 0.00 46.40 2.43
7304 9266 7.605309 CCCCATTACGAGAGTTAACTAGTTTTT 59.395 37.037 14.49 0.00 46.40 1.94
7305 9267 8.654215 CCCATTACGAGAGTTAACTAGTTTTTC 58.346 37.037 14.49 9.18 46.40 2.29
7306 9268 9.420551 CCATTACGAGAGTTAACTAGTTTTTCT 57.579 33.333 14.49 13.58 46.40 2.52
7310 9272 8.800231 ACGAGAGTTAACTAGTTTTTCTTCTC 57.200 34.615 14.49 16.09 46.40 2.87
7311 9273 7.866898 ACGAGAGTTAACTAGTTTTTCTTCTCC 59.133 37.037 14.49 2.71 46.40 3.71
7312 9274 7.060864 CGAGAGTTAACTAGTTTTTCTTCTCCG 59.939 40.741 14.49 9.79 0.00 4.63
7313 9275 6.645827 AGAGTTAACTAGTTTTTCTTCTCCGC 59.354 38.462 14.49 0.00 0.00 5.54
7314 9276 5.404667 AGTTAACTAGTTTTTCTTCTCCGCG 59.595 40.000 14.49 0.00 0.00 6.46
7315 9277 2.685100 ACTAGTTTTTCTTCTCCGCGG 58.315 47.619 22.12 22.12 0.00 6.46
7316 9278 2.298163 ACTAGTTTTTCTTCTCCGCGGA 59.702 45.455 29.03 29.03 0.00 5.54
7317 9279 1.509703 AGTTTTTCTTCTCCGCGGAC 58.490 50.000 27.28 12.11 0.00 4.79
7318 9280 1.070289 AGTTTTTCTTCTCCGCGGACT 59.930 47.619 27.28 14.52 0.00 3.85
7319 9281 1.459975 GTTTTTCTTCTCCGCGGACTC 59.540 52.381 27.28 3.04 0.00 3.36
7320 9282 0.037605 TTTTCTTCTCCGCGGACTCC 60.038 55.000 27.28 0.00 0.00 3.85
7321 9283 1.885163 TTTCTTCTCCGCGGACTCCC 61.885 60.000 27.28 0.00 0.00 4.30
7322 9284 3.839432 CTTCTCCGCGGACTCCCC 61.839 72.222 27.28 0.00 0.00 4.81
7323 9285 4.689549 TTCTCCGCGGACTCCCCA 62.690 66.667 27.28 0.94 34.14 4.96
7324 9286 3.976490 TTCTCCGCGGACTCCCCAT 62.976 63.158 27.28 0.00 34.14 4.00
7325 9287 4.227134 CTCCGCGGACTCCCCATG 62.227 72.222 27.28 8.25 34.14 3.66
7328 9290 4.473520 CGCGGACTCCCCATGCTT 62.474 66.667 0.00 0.00 34.14 3.91
7329 9291 2.825836 GCGGACTCCCCATGCTTG 60.826 66.667 0.00 0.00 34.14 4.01
7330 9292 2.124570 CGGACTCCCCATGCTTGG 60.125 66.667 11.68 11.68 43.23 3.61
7331 9293 2.440980 GGACTCCCCATGCTTGGC 60.441 66.667 13.15 0.00 42.15 4.52
7332 9294 2.825836 GACTCCCCATGCTTGGCG 60.826 66.667 13.15 5.00 42.15 5.69
7337 9299 2.519063 CCCATGCTTGGCGCCATA 60.519 61.111 33.25 20.30 42.15 2.74
7338 9300 2.558286 CCCATGCTTGGCGCCATAG 61.558 63.158 33.25 28.20 42.15 2.23
7339 9301 2.558286 CCATGCTTGGCGCCATAGG 61.558 63.158 33.25 23.33 35.85 2.57
7340 9302 2.908940 ATGCTTGGCGCCATAGGC 60.909 61.111 33.25 31.13 46.75 3.93
7353 9315 4.639135 GCCATAGGCTTTAGGACTTTTG 57.361 45.455 0.00 0.00 46.69 2.44
7354 9316 3.381590 GCCATAGGCTTTAGGACTTTTGG 59.618 47.826 0.00 0.00 46.69 3.28
7355 9317 3.381590 CCATAGGCTTTAGGACTTTTGGC 59.618 47.826 0.00 0.00 33.70 4.52
7356 9318 2.675658 AGGCTTTAGGACTTTTGGCA 57.324 45.000 0.00 0.00 0.00 4.92
7357 9319 2.239400 AGGCTTTAGGACTTTTGGCAC 58.761 47.619 0.00 0.00 0.00 5.01
7358 9320 2.158460 AGGCTTTAGGACTTTTGGCACT 60.158 45.455 0.00 0.00 0.00 4.40
7359 9321 3.073946 AGGCTTTAGGACTTTTGGCACTA 59.926 43.478 0.00 0.00 0.00 2.74
7360 9322 3.440522 GGCTTTAGGACTTTTGGCACTAG 59.559 47.826 0.00 0.00 0.00 2.57
7361 9323 3.440522 GCTTTAGGACTTTTGGCACTAGG 59.559 47.826 0.00 0.00 0.00 3.02
7362 9324 3.713826 TTAGGACTTTTGGCACTAGGG 57.286 47.619 0.00 0.00 0.00 3.53
7363 9325 1.742308 AGGACTTTTGGCACTAGGGA 58.258 50.000 0.00 0.00 0.00 4.20
7364 9326 2.062636 AGGACTTTTGGCACTAGGGAA 58.937 47.619 0.00 0.00 0.00 3.97
7365 9327 2.649816 AGGACTTTTGGCACTAGGGAAT 59.350 45.455 0.00 0.00 0.00 3.01
7366 9328 3.017442 GGACTTTTGGCACTAGGGAATC 58.983 50.000 0.00 0.00 0.00 2.52
7367 9329 3.561313 GGACTTTTGGCACTAGGGAATCA 60.561 47.826 0.00 0.00 0.00 2.57
7368 9330 4.273318 GACTTTTGGCACTAGGGAATCAT 58.727 43.478 0.00 0.00 0.00 2.45
7369 9331 5.437060 GACTTTTGGCACTAGGGAATCATA 58.563 41.667 0.00 0.00 0.00 2.15
7370 9332 5.193679 ACTTTTGGCACTAGGGAATCATAC 58.806 41.667 0.00 0.00 0.00 2.39
7371 9333 5.044846 ACTTTTGGCACTAGGGAATCATACT 60.045 40.000 0.00 0.00 0.00 2.12
7372 9334 5.450818 TTTGGCACTAGGGAATCATACTT 57.549 39.130 0.00 0.00 0.00 2.24
7373 9335 4.689612 TGGCACTAGGGAATCATACTTC 57.310 45.455 0.00 0.00 0.00 3.01
7374 9336 4.298626 TGGCACTAGGGAATCATACTTCT 58.701 43.478 0.00 0.00 0.00 2.85
7375 9337 4.345257 TGGCACTAGGGAATCATACTTCTC 59.655 45.833 0.00 0.00 0.00 2.87
7376 9338 4.591072 GGCACTAGGGAATCATACTTCTCT 59.409 45.833 0.00 0.00 39.33 3.10
7377 9339 5.071115 GGCACTAGGGAATCATACTTCTCTT 59.929 44.000 0.00 0.00 37.20 2.85
7378 9340 6.267928 GGCACTAGGGAATCATACTTCTCTTA 59.732 42.308 0.00 0.00 37.20 2.10
7379 9341 7.038658 GGCACTAGGGAATCATACTTCTCTTAT 60.039 40.741 0.00 0.00 37.20 1.73
7380 9342 8.032451 GCACTAGGGAATCATACTTCTCTTATC 58.968 40.741 0.00 0.00 37.20 1.75
7381 9343 8.240682 CACTAGGGAATCATACTTCTCTTATCG 58.759 40.741 0.00 0.00 37.20 2.92
7382 9344 8.164733 ACTAGGGAATCATACTTCTCTTATCGA 58.835 37.037 0.00 0.00 37.20 3.59
7383 9345 7.841282 AGGGAATCATACTTCTCTTATCGAA 57.159 36.000 0.00 0.00 31.80 3.71
7384 9346 8.429237 AGGGAATCATACTTCTCTTATCGAAT 57.571 34.615 0.00 0.00 31.80 3.34
7385 9347 8.875168 AGGGAATCATACTTCTCTTATCGAATT 58.125 33.333 0.00 0.00 31.80 2.17
7386 9348 9.495572 GGGAATCATACTTCTCTTATCGAATTT 57.504 33.333 0.00 0.00 0.00 1.82
7395 9357 9.829507 ACTTCTCTTATCGAATTTCATTCAGAT 57.170 29.630 0.00 4.06 39.22 2.90
7403 9365 7.452880 TCGAATTTCATTCAGATTTTCCAGT 57.547 32.000 0.00 0.00 39.22 4.00
7404 9366 8.560355 TCGAATTTCATTCAGATTTTCCAGTA 57.440 30.769 0.00 0.00 39.22 2.74
7405 9367 9.177608 TCGAATTTCATTCAGATTTTCCAGTAT 57.822 29.630 0.00 0.00 39.22 2.12
7406 9368 9.793252 CGAATTTCATTCAGATTTTCCAGTATT 57.207 29.630 0.00 0.00 39.22 1.89
7408 9370 9.793252 AATTTCATTCAGATTTTCCAGTATTCG 57.207 29.630 0.00 0.00 0.00 3.34
7409 9371 6.925610 TCATTCAGATTTTCCAGTATTCGG 57.074 37.500 0.00 0.00 0.00 4.30
7410 9372 6.649155 TCATTCAGATTTTCCAGTATTCGGA 58.351 36.000 0.00 0.00 0.00 4.55
7411 9373 6.763135 TCATTCAGATTTTCCAGTATTCGGAG 59.237 38.462 0.00 0.00 33.01 4.63
7412 9374 5.677319 TCAGATTTTCCAGTATTCGGAGT 57.323 39.130 0.00 0.00 33.01 3.85
7413 9375 6.049955 TCAGATTTTCCAGTATTCGGAGTT 57.950 37.500 0.00 0.00 33.01 3.01
7414 9376 5.874810 TCAGATTTTCCAGTATTCGGAGTTG 59.125 40.000 0.00 0.00 33.01 3.16
7415 9377 4.636206 AGATTTTCCAGTATTCGGAGTTGC 59.364 41.667 0.00 0.00 33.01 4.17
7416 9378 3.695830 TTTCCAGTATTCGGAGTTGCT 57.304 42.857 0.00 0.00 33.01 3.91
7417 9379 3.695830 TTCCAGTATTCGGAGTTGCTT 57.304 42.857 0.00 0.00 33.01 3.91
7418 9380 2.972625 TCCAGTATTCGGAGTTGCTTG 58.027 47.619 0.00 0.00 0.00 4.01
7419 9381 2.009774 CCAGTATTCGGAGTTGCTTGG 58.990 52.381 0.00 0.00 0.00 3.61
7420 9382 2.009774 CAGTATTCGGAGTTGCTTGGG 58.990 52.381 0.00 0.00 0.00 4.12
7421 9383 1.906574 AGTATTCGGAGTTGCTTGGGA 59.093 47.619 0.00 0.00 0.00 4.37
7422 9384 2.304761 AGTATTCGGAGTTGCTTGGGAA 59.695 45.455 0.00 0.00 0.00 3.97
7423 9385 2.286365 ATTCGGAGTTGCTTGGGAAA 57.714 45.000 0.00 0.00 0.00 3.13
7424 9386 2.060050 TTCGGAGTTGCTTGGGAAAA 57.940 45.000 0.00 0.00 0.00 2.29
7425 9387 1.604604 TCGGAGTTGCTTGGGAAAAG 58.395 50.000 0.00 0.00 0.00 2.27
7426 9388 0.598065 CGGAGTTGCTTGGGAAAAGG 59.402 55.000 0.00 0.00 0.00 3.11
7427 9389 1.704641 GGAGTTGCTTGGGAAAAGGT 58.295 50.000 0.00 0.00 0.00 3.50
7428 9390 1.613925 GGAGTTGCTTGGGAAAAGGTC 59.386 52.381 0.00 0.00 0.00 3.85
7429 9391 2.587522 GAGTTGCTTGGGAAAAGGTCT 58.412 47.619 0.00 0.00 0.00 3.85
7430 9392 3.497942 GGAGTTGCTTGGGAAAAGGTCTA 60.498 47.826 0.00 0.00 0.00 2.59
7431 9393 3.487372 AGTTGCTTGGGAAAAGGTCTAC 58.513 45.455 0.00 0.00 0.00 2.59
7432 9394 3.138468 AGTTGCTTGGGAAAAGGTCTACT 59.862 43.478 0.00 0.00 0.00 2.57
7433 9395 4.349930 AGTTGCTTGGGAAAAGGTCTACTA 59.650 41.667 0.00 0.00 0.00 1.82
7434 9396 4.986054 TGCTTGGGAAAAGGTCTACTAA 57.014 40.909 0.00 0.00 0.00 2.24
7435 9397 4.906618 TGCTTGGGAAAAGGTCTACTAAG 58.093 43.478 0.00 0.00 0.00 2.18
7436 9398 4.262617 GCTTGGGAAAAGGTCTACTAAGG 58.737 47.826 0.00 0.00 0.00 2.69
7437 9399 3.994931 TGGGAAAAGGTCTACTAAGGC 57.005 47.619 0.00 0.00 0.00 4.35
7438 9400 3.527937 TGGGAAAAGGTCTACTAAGGCT 58.472 45.455 0.00 0.00 0.00 4.58
7439 9401 3.914435 TGGGAAAAGGTCTACTAAGGCTT 59.086 43.478 4.58 4.58 0.00 4.35
7440 9402 4.019591 TGGGAAAAGGTCTACTAAGGCTTC 60.020 45.833 1.30 0.00 0.00 3.86
7441 9403 4.019591 GGGAAAAGGTCTACTAAGGCTTCA 60.020 45.833 1.30 0.00 0.00 3.02
7442 9404 5.179533 GGAAAAGGTCTACTAAGGCTTCAG 58.820 45.833 1.30 2.58 0.00 3.02
7443 9405 3.897141 AAGGTCTACTAAGGCTTCAGC 57.103 47.619 1.30 0.00 41.14 4.26
7444 9406 3.108847 AGGTCTACTAAGGCTTCAGCT 57.891 47.619 1.30 0.00 41.70 4.24
7445 9407 3.445987 AGGTCTACTAAGGCTTCAGCTT 58.554 45.455 1.30 0.00 41.70 3.74
7446 9408 4.611367 AGGTCTACTAAGGCTTCAGCTTA 58.389 43.478 1.30 0.00 41.70 3.09
7447 9409 5.024118 AGGTCTACTAAGGCTTCAGCTTAA 58.976 41.667 1.30 0.00 41.70 1.85
7448 9410 5.128008 AGGTCTACTAAGGCTTCAGCTTAAG 59.872 44.000 1.30 3.14 41.70 1.85
7449 9411 5.105269 GGTCTACTAAGGCTTCAGCTTAAGT 60.105 44.000 1.30 2.07 41.70 2.24
7450 9412 5.808030 GTCTACTAAGGCTTCAGCTTAAGTG 59.192 44.000 1.30 1.82 41.70 3.16
7451 9413 3.944087 ACTAAGGCTTCAGCTTAAGTGG 58.056 45.455 1.30 0.00 41.70 4.00
7452 9414 2.206576 AAGGCTTCAGCTTAAGTGGG 57.793 50.000 9.33 0.00 41.70 4.61
7453 9415 1.068121 AGGCTTCAGCTTAAGTGGGT 58.932 50.000 9.33 0.00 41.70 4.51
7454 9416 1.425448 AGGCTTCAGCTTAAGTGGGTT 59.575 47.619 9.33 0.00 41.70 4.11
7455 9417 1.813178 GGCTTCAGCTTAAGTGGGTTC 59.187 52.381 9.33 0.00 41.70 3.62
7456 9418 2.504367 GCTTCAGCTTAAGTGGGTTCA 58.496 47.619 9.33 0.00 38.21 3.18
7457 9419 2.485814 GCTTCAGCTTAAGTGGGTTCAG 59.514 50.000 9.33 0.00 38.21 3.02
7458 9420 2.185004 TCAGCTTAAGTGGGTTCAGC 57.815 50.000 4.02 0.00 35.86 4.26
7459 9421 1.168714 CAGCTTAAGTGGGTTCAGCC 58.831 55.000 4.02 0.00 36.20 4.85
7460 9422 0.321653 AGCTTAAGTGGGTTCAGCCG 60.322 55.000 4.02 0.00 36.20 5.52
7461 9423 1.923227 GCTTAAGTGGGTTCAGCCGC 61.923 60.000 4.02 0.01 38.44 6.53
7462 9424 1.302993 TTAAGTGGGTTCAGCCGCC 60.303 57.895 4.96 0.00 38.44 6.13
7463 9425 2.757980 TTAAGTGGGTTCAGCCGCCC 62.758 60.000 4.96 0.00 45.04 6.13
7467 9429 4.986708 GGGTTCAGCCGCCCCAAA 62.987 66.667 0.00 0.00 38.99 3.28
7468 9430 2.679996 GGTTCAGCCGCCCCAAAT 60.680 61.111 0.00 0.00 0.00 2.32
7469 9431 2.710902 GGTTCAGCCGCCCCAAATC 61.711 63.158 0.00 0.00 0.00 2.17
7470 9432 1.678970 GTTCAGCCGCCCCAAATCT 60.679 57.895 0.00 0.00 0.00 2.40
7471 9433 1.678635 TTCAGCCGCCCCAAATCTG 60.679 57.895 0.00 0.00 0.00 2.90
7472 9434 2.045045 CAGCCGCCCCAAATCTGA 60.045 61.111 0.00 0.00 0.00 3.27
7473 9435 2.044946 AGCCGCCCCAAATCTGAC 60.045 61.111 0.00 0.00 0.00 3.51
7474 9436 2.044946 GCCGCCCCAAATCTGACT 60.045 61.111 0.00 0.00 0.00 3.41
7475 9437 2.115291 GCCGCCCCAAATCTGACTC 61.115 63.158 0.00 0.00 0.00 3.36
7476 9438 1.299648 CCGCCCCAAATCTGACTCA 59.700 57.895 0.00 0.00 0.00 3.41
7477 9439 0.322456 CCGCCCCAAATCTGACTCAA 60.322 55.000 0.00 0.00 0.00 3.02
7478 9440 1.683011 CCGCCCCAAATCTGACTCAAT 60.683 52.381 0.00 0.00 0.00 2.57
7479 9441 1.672881 CGCCCCAAATCTGACTCAATC 59.327 52.381 0.00 0.00 0.00 2.67
7480 9442 2.027385 GCCCCAAATCTGACTCAATCC 58.973 52.381 0.00 0.00 0.00 3.01
7481 9443 2.621407 GCCCCAAATCTGACTCAATCCA 60.621 50.000 0.00 0.00 0.00 3.41
7482 9444 3.285484 CCCCAAATCTGACTCAATCCAG 58.715 50.000 0.00 0.00 0.00 3.86
7483 9445 3.285484 CCCAAATCTGACTCAATCCAGG 58.715 50.000 0.00 0.00 0.00 4.45
7484 9446 3.285484 CCAAATCTGACTCAATCCAGGG 58.715 50.000 0.00 0.00 0.00 4.45
7485 9447 3.308688 CCAAATCTGACTCAATCCAGGGT 60.309 47.826 0.00 0.00 0.00 4.34
7486 9448 4.338879 CAAATCTGACTCAATCCAGGGTT 58.661 43.478 0.00 0.00 0.00 4.11
7487 9449 5.500234 CAAATCTGACTCAATCCAGGGTTA 58.500 41.667 0.00 0.00 0.00 2.85
7488 9450 5.983333 AATCTGACTCAATCCAGGGTTAT 57.017 39.130 0.00 0.00 0.00 1.89
7489 9451 7.282585 CAAATCTGACTCAATCCAGGGTTATA 58.717 38.462 0.00 0.00 0.00 0.98
7490 9452 7.639062 AATCTGACTCAATCCAGGGTTATAT 57.361 36.000 0.00 0.00 0.00 0.86
7491 9453 8.742125 AATCTGACTCAATCCAGGGTTATATA 57.258 34.615 0.00 0.00 0.00 0.86
7492 9454 8.923838 ATCTGACTCAATCCAGGGTTATATAT 57.076 34.615 0.00 0.00 0.00 0.86
7493 9455 8.367660 TCTGACTCAATCCAGGGTTATATATC 57.632 38.462 0.00 0.00 0.00 1.63
7494 9456 7.955750 TCTGACTCAATCCAGGGTTATATATCA 59.044 37.037 0.00 0.00 0.00 2.15
7495 9457 8.685257 TGACTCAATCCAGGGTTATATATCAT 57.315 34.615 0.00 0.00 0.00 2.45
7496 9458 9.782900 TGACTCAATCCAGGGTTATATATCATA 57.217 33.333 0.00 0.00 0.00 2.15
7501 9463 9.632638 CAATCCAGGGTTATATATCATAAAGGG 57.367 37.037 0.00 0.00 0.00 3.95
7502 9464 7.208064 TCCAGGGTTATATATCATAAAGGGC 57.792 40.000 0.00 0.00 0.00 5.19
7503 9465 6.971840 TCCAGGGTTATATATCATAAAGGGCT 59.028 38.462 0.00 0.00 0.00 5.19
7504 9466 7.464265 TCCAGGGTTATATATCATAAAGGGCTT 59.536 37.037 0.00 0.00 0.00 4.35
7505 9467 7.557719 CCAGGGTTATATATCATAAAGGGCTTG 59.442 40.741 0.00 0.00 0.00 4.01
7506 9468 7.557719 CAGGGTTATATATCATAAAGGGCTTGG 59.442 40.741 0.00 0.00 0.00 3.61
7507 9469 7.241888 AGGGTTATATATCATAAAGGGCTTGGT 59.758 37.037 0.00 0.00 0.00 3.67
7508 9470 7.893833 GGGTTATATATCATAAAGGGCTTGGTT 59.106 37.037 0.00 0.00 0.00 3.67
7509 9471 8.739972 GGTTATATATCATAAAGGGCTTGGTTG 58.260 37.037 0.00 0.00 0.00 3.77
7510 9472 8.739972 GTTATATATCATAAAGGGCTTGGTTGG 58.260 37.037 0.00 0.00 0.00 3.77
7511 9473 2.990740 TCATAAAGGGCTTGGTTGGT 57.009 45.000 0.00 0.00 0.00 3.67
7512 9474 4.601406 ATCATAAAGGGCTTGGTTGGTA 57.399 40.909 0.00 0.00 0.00 3.25
7513 9475 4.601406 TCATAAAGGGCTTGGTTGGTAT 57.399 40.909 0.00 0.00 0.00 2.73
7514 9476 4.277476 TCATAAAGGGCTTGGTTGGTATG 58.723 43.478 0.00 0.00 0.00 2.39
7515 9477 1.937191 AAAGGGCTTGGTTGGTATGG 58.063 50.000 0.00 0.00 0.00 2.74
7516 9478 0.614697 AAGGGCTTGGTTGGTATGGC 60.615 55.000 0.00 0.00 0.00 4.40
7517 9479 2.058001 GGGCTTGGTTGGTATGGCC 61.058 63.158 0.00 0.00 38.92 5.36
7518 9480 2.058001 GGCTTGGTTGGTATGGCCC 61.058 63.158 0.00 0.00 36.04 5.80
7519 9481 1.304879 GCTTGGTTGGTATGGCCCA 60.305 57.895 0.00 0.00 36.04 5.36
7520 9482 0.902516 GCTTGGTTGGTATGGCCCAA 60.903 55.000 0.00 0.00 42.16 4.12
7521 9483 1.864669 CTTGGTTGGTATGGCCCAAT 58.135 50.000 0.00 0.00 45.79 3.16
7522 9484 1.756538 CTTGGTTGGTATGGCCCAATC 59.243 52.381 0.00 0.00 45.79 2.67
7523 9485 0.032615 TGGTTGGTATGGCCCAATCC 60.033 55.000 0.00 2.56 45.79 3.01
7524 9486 0.759060 GGTTGGTATGGCCCAATCCC 60.759 60.000 0.00 0.00 45.79 3.85
7525 9487 0.032615 GTTGGTATGGCCCAATCCCA 60.033 55.000 0.00 0.00 45.79 4.37
7526 9488 0.940452 TTGGTATGGCCCAATCCCAT 59.060 50.000 0.00 0.00 44.85 4.00
7527 9489 0.482446 TGGTATGGCCCAATCCCATC 59.518 55.000 0.00 0.00 41.97 3.51
7528 9490 0.482446 GGTATGGCCCAATCCCATCA 59.518 55.000 0.00 0.00 41.97 3.07
7529 9491 1.077663 GGTATGGCCCAATCCCATCAT 59.922 52.381 0.00 0.00 41.97 2.45
7530 9492 2.493313 GGTATGGCCCAATCCCATCATT 60.493 50.000 0.00 0.00 41.97 2.57
7531 9493 2.500269 ATGGCCCAATCCCATCATTT 57.500 45.000 0.00 0.00 38.71 2.32
7532 9494 3.634218 ATGGCCCAATCCCATCATTTA 57.366 42.857 0.00 0.00 38.71 1.40
7533 9495 3.411454 TGGCCCAATCCCATCATTTAA 57.589 42.857 0.00 0.00 0.00 1.52
7534 9496 3.729108 TGGCCCAATCCCATCATTTAAA 58.271 40.909 0.00 0.00 0.00 1.52
7535 9497 4.305524 TGGCCCAATCCCATCATTTAAAT 58.694 39.130 0.00 0.00 0.00 1.40
7536 9498 4.102838 TGGCCCAATCCCATCATTTAAATG 59.897 41.667 20.13 20.13 37.75 2.32
7550 9512 6.283694 TCATTTAAATGAGAGTGGATCGAGG 58.716 40.000 23.86 0.00 40.32 4.63
7551 9513 4.672587 TTAAATGAGAGTGGATCGAGGG 57.327 45.455 0.00 0.00 0.00 4.30
8251 10218 0.178990 AGGTGACCACTTTGGAAGCC 60.179 55.000 3.63 0.00 40.96 4.35
8610 10607 2.029844 GGTGTGCGAAGAGGTGAGC 61.030 63.158 0.00 0.00 0.00 4.26
8641 10638 7.715657 TGTTTGAGCATTGACTCAGTATTTTT 58.284 30.769 9.62 0.00 46.85 1.94
9138 11138 5.536554 AAGATAGAAAGTCACATTGTGCG 57.463 39.130 12.04 0.00 32.98 5.34
9461 11461 2.855014 AGGCCCGTTTGGTACCCA 60.855 61.111 10.07 0.00 36.04 4.51
9497 11497 0.107848 AACCCCAGAATTACTCGCCG 60.108 55.000 0.00 0.00 0.00 6.46
9529 11529 0.178958 AGAGGAGACACCAGACGGTT 60.179 55.000 0.00 0.00 46.31 4.44
9539 11539 1.758592 CAGACGGTTGGGGGAGAAA 59.241 57.895 0.00 0.00 0.00 2.52
9540 11540 0.109723 CAGACGGTTGGGGGAGAAAA 59.890 55.000 0.00 0.00 0.00 2.29
9585 11585 9.784531 CAATACTTGGATTATCTAACCATCAGT 57.215 33.333 0.00 0.00 33.56 3.41
9587 11587 6.831976 ACTTGGATTATCTAACCATCAGTCC 58.168 40.000 0.00 0.00 33.56 3.85
9588 11588 5.825593 TGGATTATCTAACCATCAGTCCC 57.174 43.478 0.00 0.00 0.00 4.46
9656 11656 2.041485 TGATGATTTCTGTGGCAAGGGA 59.959 45.455 0.00 0.00 0.00 4.20
9659 11659 2.238521 GATTTCTGTGGCAAGGGACAA 58.761 47.619 0.00 0.00 30.25 3.18
9663 11663 1.003580 TCTGTGGCAAGGGACAAGATC 59.996 52.381 0.00 0.00 30.25 2.75
9733 11733 6.606241 TTTACTCCCTCCATCCCATAATTT 57.394 37.500 0.00 0.00 0.00 1.82
9745 11745 9.983024 TCCATCCCATAATTTAAGAGTGTTTTA 57.017 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 76 8.029642 ACATGGTTTTACAGTCTTATTCGAAG 57.970 34.615 3.35 0.00 0.00 3.79
82 87 5.971763 TCTTGCAAAACATGGTTTTACAGT 58.028 33.333 5.84 0.00 0.00 3.55
85 90 7.713764 AGAATCTTGCAAAACATGGTTTTAC 57.286 32.000 5.84 2.40 27.43 2.01
91 96 6.917533 AGTTCTAGAATCTTGCAAAACATGG 58.082 36.000 8.75 0.00 0.00 3.66
128 133 5.689068 CACTCGACCTAACGTTTTTACTTCT 59.311 40.000 5.91 0.00 34.70 2.85
129 134 5.107722 CCACTCGACCTAACGTTTTTACTTC 60.108 44.000 5.91 0.00 34.70 3.01
132 137 3.120889 GCCACTCGACCTAACGTTTTTAC 60.121 47.826 5.91 0.00 34.70 2.01
133 138 3.059166 GCCACTCGACCTAACGTTTTTA 58.941 45.455 5.91 0.00 34.70 1.52
138 145 1.593296 GGAGCCACTCGACCTAACGT 61.593 60.000 0.00 0.00 34.70 3.99
190 197 7.936301 GGGCTTTTATCTGAAGATGAGATTAGT 59.064 37.037 2.99 0.00 36.05 2.24
212 219 5.659971 AGAAAATATGAAGCTCATTTGGGCT 59.340 36.000 0.00 0.00 38.26 5.19
229 236 5.779241 AGAGGTGTCCATGGAAGAAAATA 57.221 39.130 18.20 0.00 0.00 1.40
262 269 7.545965 GTGCTCATGTAGTGTAATTCTTGTAGT 59.454 37.037 0.00 0.00 0.00 2.73
267 274 5.643777 GTGGTGCTCATGTAGTGTAATTCTT 59.356 40.000 0.00 0.00 0.00 2.52
304 311 3.895041 ACCAAACTTGTTTCATGGTAGGG 59.105 43.478 6.57 1.48 42.38 3.53
474 481 9.679661 ACCTGATGGTTTTATTTTTCTTGTTTT 57.320 25.926 0.00 0.00 46.05 2.43
507 514 6.345298 GGATAGATCCTAATGCTAAGGAAGC 58.655 44.000 0.98 0.00 46.06 3.86
509 516 7.179338 GTCTGGATAGATCCTAATGCTAAGGAA 59.821 40.741 9.91 0.00 46.06 3.36
533 540 6.100404 AGATGAGATTAGAGAGGCAATGTC 57.900 41.667 0.00 0.00 0.00 3.06
537 544 5.896106 TCTGAAGATGAGATTAGAGAGGCAA 59.104 40.000 0.00 0.00 0.00 4.52
540 547 7.822161 TTCTCTGAAGATGAGATTAGAGAGG 57.178 40.000 0.00 0.00 40.94 3.69
544 551 6.183360 GGGCTTTCTCTGAAGATGAGATTAGA 60.183 42.308 0.00 0.00 39.87 2.10
580 587 7.484140 CCCATGGTAGAAAAATTAAGAAGCTC 58.516 38.462 11.73 0.00 0.00 4.09
581 588 6.127338 GCCCATGGTAGAAAAATTAAGAAGCT 60.127 38.462 11.73 0.00 0.00 3.74
582 589 6.042777 GCCCATGGTAGAAAAATTAAGAAGC 58.957 40.000 11.73 0.00 0.00 3.86
583 590 7.035612 GTGCCCATGGTAGAAAAATTAAGAAG 58.964 38.462 11.73 0.00 0.00 2.85
586 593 5.422012 AGGTGCCCATGGTAGAAAAATTAAG 59.578 40.000 11.73 0.00 0.00 1.85
589 596 3.769300 GAGGTGCCCATGGTAGAAAAATT 59.231 43.478 11.73 0.00 0.00 1.82
590 597 3.011708 AGAGGTGCCCATGGTAGAAAAAT 59.988 43.478 11.73 0.00 0.00 1.82
591 598 2.378547 AGAGGTGCCCATGGTAGAAAAA 59.621 45.455 11.73 0.00 0.00 1.94
593 600 1.668826 AGAGGTGCCCATGGTAGAAA 58.331 50.000 11.73 0.00 0.00 2.52
594 601 1.559682 GAAGAGGTGCCCATGGTAGAA 59.440 52.381 11.73 0.00 0.00 2.10
595 602 1.204146 GAAGAGGTGCCCATGGTAGA 58.796 55.000 11.73 0.00 0.00 2.59
597 604 2.504175 GTTAGAAGAGGTGCCCATGGTA 59.496 50.000 11.73 0.00 0.00 3.25
598 605 1.282157 GTTAGAAGAGGTGCCCATGGT 59.718 52.381 11.73 0.00 0.00 3.55
600 607 2.787473 TGTTAGAAGAGGTGCCCATG 57.213 50.000 0.00 0.00 0.00 3.66
601 608 5.193679 GTTTATGTTAGAAGAGGTGCCCAT 58.806 41.667 0.00 0.00 0.00 4.00
603 610 4.585879 TGTTTATGTTAGAAGAGGTGCCC 58.414 43.478 0.00 0.00 0.00 5.36
604 611 5.705905 AGTTGTTTATGTTAGAAGAGGTGCC 59.294 40.000 0.00 0.00 0.00 5.01
606 613 8.608844 AAGAGTTGTTTATGTTAGAAGAGGTG 57.391 34.615 0.00 0.00 0.00 4.00
631 638 5.924254 GTGGCGCTCACATAGTGTAATTATA 59.076 40.000 19.85 0.00 45.39 0.98
683 690 8.792830 TTTTCTCTATCTGACATGGTAAAAGG 57.207 34.615 0.00 0.00 0.00 3.11
1063 1088 2.816958 CGATTGCTGCTGCTCCGT 60.817 61.111 17.00 0.05 40.48 4.69
1267 1310 1.450312 GCCACCGATCCTTGACCTG 60.450 63.158 0.00 0.00 0.00 4.00
1557 1601 0.536006 AGCTGAAGCCTTGTGTGACC 60.536 55.000 0.00 0.00 43.38 4.02
1842 1887 6.398234 TCCGAATCCAACAAAAGATCAAAA 57.602 33.333 0.00 0.00 0.00 2.44
1862 1907 5.006153 TGTCCTGTCAAATACTACATCCG 57.994 43.478 0.00 0.00 0.00 4.18
2084 2131 5.992217 CACACTCCTCCCTAATTAATAGCAC 59.008 44.000 0.00 0.00 0.00 4.40
2160 2207 3.515602 AGGGCTCATATTCCATGTTCC 57.484 47.619 0.00 0.00 0.00 3.62
2243 2290 1.142060 CAGAACAACCCACACCCTACA 59.858 52.381 0.00 0.00 0.00 2.74
3166 3246 5.745227 CAAGAGATCTTAAAAGGCACCCTA 58.255 41.667 0.00 0.00 34.28 3.53
3327 5010 8.762645 CAATATAGATTCTATAGAGTTGGGCCA 58.237 37.037 16.44 0.00 0.00 5.36
4729 6560 3.717707 TGAGTGACACAAGCAGTACTTC 58.282 45.455 8.59 0.00 36.04 3.01
4861 6780 4.829064 TGAGCAAATCCGGTAATTATGC 57.171 40.909 0.00 7.91 0.00 3.14
5185 7106 6.319141 AGGACACAAGCTTCAGAAAATTAC 57.681 37.500 0.00 0.00 0.00 1.89
5469 7390 8.594550 AGGCAAAGAAACTATAGAAGTCTTACA 58.405 33.333 6.78 0.00 37.50 2.41
5785 7718 4.634883 GCCTTCATCTGCTATGTCATATGG 59.365 45.833 2.13 0.00 0.00 2.74
5893 7826 9.936329 ATTGATAATATTCAAACCCTACCAACT 57.064 29.630 0.00 0.00 38.98 3.16
5980 7913 7.665145 TCAGATCAATAAAACTGATGTCCAACA 59.335 33.333 0.00 0.00 33.63 3.33
6068 8001 4.939052 ACAACTATCACTAGATTCCCCG 57.061 45.455 0.00 0.00 35.67 5.73
6451 8409 4.806640 AAATGTTGCAGGGAAAGGTATG 57.193 40.909 0.00 0.00 0.00 2.39
6575 8533 7.439157 TCATGTTCCTCAAATCTGTTTACAG 57.561 36.000 3.47 3.47 45.08 2.74
6728 8689 6.653989 ACATAAGAACACTGAGATAAAGGGG 58.346 40.000 0.00 0.00 0.00 4.79
6729 8690 7.439655 GCTACATAAGAACACTGAGATAAAGGG 59.560 40.741 0.00 0.00 0.00 3.95
6761 8722 4.868450 TTTGAACCAAACTGTGAGTACG 57.132 40.909 0.00 0.00 0.00 3.67
6839 8800 6.105397 TGGTATTGAACGGAAAAGTACTCT 57.895 37.500 0.00 0.00 0.00 3.24
7295 9257 2.298163 TCCGCGGAGAAGAAAAACTAGT 59.702 45.455 27.28 0.00 0.00 2.57
7296 9258 2.666994 GTCCGCGGAGAAGAAAAACTAG 59.333 50.000 31.97 0.00 0.00 2.57
7299 9261 1.459975 GAGTCCGCGGAGAAGAAAAAC 59.540 52.381 31.97 14.37 0.00 2.43
7300 9262 1.607251 GGAGTCCGCGGAGAAGAAAAA 60.607 52.381 31.97 0.00 0.00 1.94
7302 9264 1.590147 GGAGTCCGCGGAGAAGAAA 59.410 57.895 31.97 0.87 0.00 2.52
7303 9265 2.348888 GGGAGTCCGCGGAGAAGAA 61.349 63.158 31.97 1.85 0.00 2.52
7304 9266 2.754658 GGGAGTCCGCGGAGAAGA 60.755 66.667 31.97 2.83 0.00 2.87
7305 9267 3.839432 GGGGAGTCCGCGGAGAAG 61.839 72.222 31.97 0.00 0.00 2.85
7306 9268 3.976490 ATGGGGAGTCCGCGGAGAA 62.976 63.158 31.97 11.00 39.47 2.87
7307 9269 4.458829 ATGGGGAGTCCGCGGAGA 62.459 66.667 31.97 4.83 39.47 3.71
7308 9270 4.227134 CATGGGGAGTCCGCGGAG 62.227 72.222 31.97 10.66 39.47 4.63
7311 9273 4.473520 AAGCATGGGGAGTCCGCG 62.474 66.667 20.33 9.01 39.47 6.46
7312 9274 2.825836 CAAGCATGGGGAGTCCGC 60.826 66.667 19.10 19.10 38.76 5.54
7313 9275 2.124570 CCAAGCATGGGGAGTCCG 60.125 66.667 2.26 0.00 43.51 4.79
7333 9295 3.381590 GCCAAAAGTCCTAAAGCCTATGG 59.618 47.826 0.00 0.00 0.00 2.74
7334 9296 4.016444 TGCCAAAAGTCCTAAAGCCTATG 58.984 43.478 0.00 0.00 0.00 2.23
7335 9297 4.017126 GTGCCAAAAGTCCTAAAGCCTAT 58.983 43.478 0.00 0.00 0.00 2.57
7336 9298 3.073946 AGTGCCAAAAGTCCTAAAGCCTA 59.926 43.478 0.00 0.00 0.00 3.93
7337 9299 2.158460 AGTGCCAAAAGTCCTAAAGCCT 60.158 45.455 0.00 0.00 0.00 4.58
7338 9300 2.239400 AGTGCCAAAAGTCCTAAAGCC 58.761 47.619 0.00 0.00 0.00 4.35
7339 9301 3.440522 CCTAGTGCCAAAAGTCCTAAAGC 59.559 47.826 0.00 0.00 0.00 3.51
7340 9302 4.010349 CCCTAGTGCCAAAAGTCCTAAAG 58.990 47.826 0.00 0.00 0.00 1.85
7341 9303 3.653836 TCCCTAGTGCCAAAAGTCCTAAA 59.346 43.478 0.00 0.00 0.00 1.85
7342 9304 3.253220 TCCCTAGTGCCAAAAGTCCTAA 58.747 45.455 0.00 0.00 0.00 2.69
7343 9305 2.910544 TCCCTAGTGCCAAAAGTCCTA 58.089 47.619 0.00 0.00 0.00 2.94
7344 9306 1.742308 TCCCTAGTGCCAAAAGTCCT 58.258 50.000 0.00 0.00 0.00 3.85
7345 9307 2.579410 TTCCCTAGTGCCAAAAGTCC 57.421 50.000 0.00 0.00 0.00 3.85
7346 9308 3.686016 TGATTCCCTAGTGCCAAAAGTC 58.314 45.455 0.00 0.00 0.00 3.01
7347 9309 3.806949 TGATTCCCTAGTGCCAAAAGT 57.193 42.857 0.00 0.00 0.00 2.66
7348 9310 5.440610 AGTATGATTCCCTAGTGCCAAAAG 58.559 41.667 0.00 0.00 0.00 2.27
7349 9311 5.450818 AGTATGATTCCCTAGTGCCAAAA 57.549 39.130 0.00 0.00 0.00 2.44
7350 9312 5.191722 AGAAGTATGATTCCCTAGTGCCAAA 59.808 40.000 0.00 0.00 0.00 3.28
7351 9313 4.721776 AGAAGTATGATTCCCTAGTGCCAA 59.278 41.667 0.00 0.00 0.00 4.52
7352 9314 4.298626 AGAAGTATGATTCCCTAGTGCCA 58.701 43.478 0.00 0.00 0.00 4.92
7353 9315 4.591072 AGAGAAGTATGATTCCCTAGTGCC 59.409 45.833 0.00 0.00 0.00 5.01
7354 9316 5.799827 AGAGAAGTATGATTCCCTAGTGC 57.200 43.478 0.00 0.00 0.00 4.40
7355 9317 8.240682 CGATAAGAGAAGTATGATTCCCTAGTG 58.759 40.741 0.00 0.00 0.00 2.74
7356 9318 8.164733 TCGATAAGAGAAGTATGATTCCCTAGT 58.835 37.037 0.00 0.00 0.00 2.57
7357 9319 8.568676 TCGATAAGAGAAGTATGATTCCCTAG 57.431 38.462 0.00 0.00 0.00 3.02
7358 9320 8.935614 TTCGATAAGAGAAGTATGATTCCCTA 57.064 34.615 0.00 0.00 0.00 3.53
7359 9321 7.841282 TTCGATAAGAGAAGTATGATTCCCT 57.159 36.000 0.00 0.00 0.00 4.20
7360 9322 9.495572 AAATTCGATAAGAGAAGTATGATTCCC 57.504 33.333 0.00 0.00 0.00 3.97
7382 9344 9.793252 CGAATACTGGAAAATCTGAATGAAATT 57.207 29.630 0.00 0.00 40.93 1.82
7383 9345 8.408601 CCGAATACTGGAAAATCTGAATGAAAT 58.591 33.333 0.00 0.00 0.00 2.17
7384 9346 7.609918 TCCGAATACTGGAAAATCTGAATGAAA 59.390 33.333 0.00 0.00 30.98 2.69
7385 9347 7.109501 TCCGAATACTGGAAAATCTGAATGAA 58.890 34.615 0.00 0.00 30.98 2.57
7386 9348 6.649155 TCCGAATACTGGAAAATCTGAATGA 58.351 36.000 0.00 0.00 30.98 2.57
7387 9349 6.540189 ACTCCGAATACTGGAAAATCTGAATG 59.460 38.462 0.00 0.00 34.44 2.67
7388 9350 6.653989 ACTCCGAATACTGGAAAATCTGAAT 58.346 36.000 0.00 0.00 34.44 2.57
7389 9351 6.049955 ACTCCGAATACTGGAAAATCTGAA 57.950 37.500 0.00 0.00 34.44 3.02
7390 9352 5.677319 ACTCCGAATACTGGAAAATCTGA 57.323 39.130 0.00 0.00 34.44 3.27
7391 9353 5.447818 GCAACTCCGAATACTGGAAAATCTG 60.448 44.000 0.00 0.00 34.44 2.90
7392 9354 4.636206 GCAACTCCGAATACTGGAAAATCT 59.364 41.667 0.00 0.00 34.44 2.40
7393 9355 4.636206 AGCAACTCCGAATACTGGAAAATC 59.364 41.667 0.00 0.00 34.44 2.17
7394 9356 4.589908 AGCAACTCCGAATACTGGAAAAT 58.410 39.130 0.00 0.00 34.44 1.82
7395 9357 4.015872 AGCAACTCCGAATACTGGAAAA 57.984 40.909 0.00 0.00 34.44 2.29
7396 9358 3.695830 AGCAACTCCGAATACTGGAAA 57.304 42.857 0.00 0.00 34.44 3.13
7397 9359 3.334691 CAAGCAACTCCGAATACTGGAA 58.665 45.455 0.00 0.00 34.44 3.53
7398 9360 2.354704 CCAAGCAACTCCGAATACTGGA 60.355 50.000 0.00 0.00 0.00 3.86
7399 9361 2.009774 CCAAGCAACTCCGAATACTGG 58.990 52.381 0.00 0.00 0.00 4.00
7400 9362 2.009774 CCCAAGCAACTCCGAATACTG 58.990 52.381 0.00 0.00 0.00 2.74
7401 9363 1.906574 TCCCAAGCAACTCCGAATACT 59.093 47.619 0.00 0.00 0.00 2.12
7402 9364 2.396590 TCCCAAGCAACTCCGAATAC 57.603 50.000 0.00 0.00 0.00 1.89
7403 9365 3.426787 TTTCCCAAGCAACTCCGAATA 57.573 42.857 0.00 0.00 0.00 1.75
7404 9366 2.286365 TTTCCCAAGCAACTCCGAAT 57.714 45.000 0.00 0.00 0.00 3.34
7405 9367 1.953686 CTTTTCCCAAGCAACTCCGAA 59.046 47.619 0.00 0.00 0.00 4.30
7406 9368 1.604604 CTTTTCCCAAGCAACTCCGA 58.395 50.000 0.00 0.00 0.00 4.55
7407 9369 0.598065 CCTTTTCCCAAGCAACTCCG 59.402 55.000 0.00 0.00 0.00 4.63
7408 9370 1.613925 GACCTTTTCCCAAGCAACTCC 59.386 52.381 0.00 0.00 0.00 3.85
7409 9371 2.587522 AGACCTTTTCCCAAGCAACTC 58.412 47.619 0.00 0.00 0.00 3.01
7410 9372 2.755952 AGACCTTTTCCCAAGCAACT 57.244 45.000 0.00 0.00 0.00 3.16
7411 9373 3.487372 AGTAGACCTTTTCCCAAGCAAC 58.513 45.455 0.00 0.00 0.00 4.17
7412 9374 3.876309 AGTAGACCTTTTCCCAAGCAA 57.124 42.857 0.00 0.00 0.00 3.91
7413 9375 4.263331 CCTTAGTAGACCTTTTCCCAAGCA 60.263 45.833 0.00 0.00 0.00 3.91
7414 9376 4.262617 CCTTAGTAGACCTTTTCCCAAGC 58.737 47.826 0.00 0.00 0.00 4.01
7415 9377 4.019231 AGCCTTAGTAGACCTTTTCCCAAG 60.019 45.833 0.00 0.00 0.00 3.61
7416 9378 3.914435 AGCCTTAGTAGACCTTTTCCCAA 59.086 43.478 0.00 0.00 0.00 4.12
7417 9379 3.527937 AGCCTTAGTAGACCTTTTCCCA 58.472 45.455 0.00 0.00 0.00 4.37
7418 9380 4.019591 TGAAGCCTTAGTAGACCTTTTCCC 60.020 45.833 0.00 0.00 0.00 3.97
7419 9381 5.161943 TGAAGCCTTAGTAGACCTTTTCC 57.838 43.478 0.00 0.00 0.00 3.13
7420 9382 4.632251 GCTGAAGCCTTAGTAGACCTTTTC 59.368 45.833 0.00 0.00 34.31 2.29
7421 9383 4.287326 AGCTGAAGCCTTAGTAGACCTTTT 59.713 41.667 0.00 0.00 43.38 2.27
7422 9384 3.841255 AGCTGAAGCCTTAGTAGACCTTT 59.159 43.478 0.00 0.00 43.38 3.11
7423 9385 3.445987 AGCTGAAGCCTTAGTAGACCTT 58.554 45.455 0.00 0.00 43.38 3.50
7424 9386 3.108847 AGCTGAAGCCTTAGTAGACCT 57.891 47.619 0.00 0.00 43.38 3.85
7425 9387 3.897141 AAGCTGAAGCCTTAGTAGACC 57.103 47.619 0.00 0.00 43.38 3.85
7426 9388 5.808030 CACTTAAGCTGAAGCCTTAGTAGAC 59.192 44.000 11.06 0.00 43.38 2.59
7427 9389 5.105310 CCACTTAAGCTGAAGCCTTAGTAGA 60.105 44.000 11.06 0.00 43.38 2.59
7428 9390 5.112686 CCACTTAAGCTGAAGCCTTAGTAG 58.887 45.833 11.06 0.00 43.38 2.57
7429 9391 4.081087 CCCACTTAAGCTGAAGCCTTAGTA 60.081 45.833 11.06 0.00 43.38 1.82
7430 9392 3.307762 CCCACTTAAGCTGAAGCCTTAGT 60.308 47.826 11.06 0.00 43.38 2.24
7431 9393 3.274288 CCCACTTAAGCTGAAGCCTTAG 58.726 50.000 11.06 0.00 43.38 2.18
7432 9394 2.642807 ACCCACTTAAGCTGAAGCCTTA 59.357 45.455 11.06 0.00 43.38 2.69
7433 9395 1.425448 ACCCACTTAAGCTGAAGCCTT 59.575 47.619 11.06 0.00 43.38 4.35
7434 9396 1.068121 ACCCACTTAAGCTGAAGCCT 58.932 50.000 11.06 0.00 43.38 4.58
7435 9397 1.813178 GAACCCACTTAAGCTGAAGCC 59.187 52.381 11.06 0.00 43.38 4.35
7436 9398 2.485814 CTGAACCCACTTAAGCTGAAGC 59.514 50.000 11.06 0.00 42.49 3.86
7437 9399 2.485814 GCTGAACCCACTTAAGCTGAAG 59.514 50.000 9.49 9.49 0.00 3.02
7438 9400 2.504367 GCTGAACCCACTTAAGCTGAA 58.496 47.619 1.29 0.00 0.00 3.02
7439 9401 1.271379 GGCTGAACCCACTTAAGCTGA 60.271 52.381 1.29 0.00 34.29 4.26
7440 9402 1.168714 GGCTGAACCCACTTAAGCTG 58.831 55.000 1.29 0.39 34.29 4.24
7441 9403 0.321653 CGGCTGAACCCACTTAAGCT 60.322 55.000 1.29 0.00 34.29 3.74
7442 9404 1.923227 GCGGCTGAACCCACTTAAGC 61.923 60.000 1.29 0.00 33.26 3.09
7443 9405 1.305930 GGCGGCTGAACCCACTTAAG 61.306 60.000 0.00 0.00 33.26 1.85
7444 9406 1.302993 GGCGGCTGAACCCACTTAA 60.303 57.895 0.00 0.00 33.26 1.85
7445 9407 2.349755 GGCGGCTGAACCCACTTA 59.650 61.111 0.00 0.00 33.26 2.24
7446 9408 4.660938 GGGCGGCTGAACCCACTT 62.661 66.667 9.56 0.00 46.22 3.16
7450 9412 4.986708 TTTGGGGCGGCTGAACCC 62.987 66.667 16.65 16.65 46.24 4.11
7451 9413 2.679996 ATTTGGGGCGGCTGAACC 60.680 61.111 9.56 1.30 0.00 3.62
7452 9414 1.678970 AGATTTGGGGCGGCTGAAC 60.679 57.895 9.56 0.00 0.00 3.18
7453 9415 1.678635 CAGATTTGGGGCGGCTGAA 60.679 57.895 9.56 1.60 0.00 3.02
7454 9416 2.045045 CAGATTTGGGGCGGCTGA 60.045 61.111 9.56 0.00 0.00 4.26
7455 9417 2.045045 TCAGATTTGGGGCGGCTG 60.045 61.111 9.56 0.00 0.00 4.85
7456 9418 2.044946 GTCAGATTTGGGGCGGCT 60.045 61.111 9.56 0.00 0.00 5.52
7457 9419 2.044946 AGTCAGATTTGGGGCGGC 60.045 61.111 0.00 0.00 0.00 6.53
7458 9420 0.322456 TTGAGTCAGATTTGGGGCGG 60.322 55.000 0.00 0.00 0.00 6.13
7459 9421 1.672881 GATTGAGTCAGATTTGGGGCG 59.327 52.381 0.00 0.00 0.00 6.13
7460 9422 2.027385 GGATTGAGTCAGATTTGGGGC 58.973 52.381 0.00 0.00 0.00 5.80
7461 9423 3.285484 CTGGATTGAGTCAGATTTGGGG 58.715 50.000 0.00 0.00 33.11 4.96
7462 9424 3.285484 CCTGGATTGAGTCAGATTTGGG 58.715 50.000 0.00 0.00 33.11 4.12
7463 9425 3.285484 CCCTGGATTGAGTCAGATTTGG 58.715 50.000 0.00 0.00 33.11 3.28
7464 9426 3.960571 ACCCTGGATTGAGTCAGATTTG 58.039 45.455 0.00 0.00 33.11 2.32
7465 9427 4.664688 AACCCTGGATTGAGTCAGATTT 57.335 40.909 0.00 0.00 33.11 2.17
7466 9428 5.983333 ATAACCCTGGATTGAGTCAGATT 57.017 39.130 0.00 0.00 33.11 2.40
7467 9429 8.923838 ATATATAACCCTGGATTGAGTCAGAT 57.076 34.615 0.00 0.00 33.11 2.90
7468 9430 7.955750 TGATATATAACCCTGGATTGAGTCAGA 59.044 37.037 0.00 0.00 33.11 3.27
7469 9431 8.138928 TGATATATAACCCTGGATTGAGTCAG 57.861 38.462 0.00 0.00 0.00 3.51
7470 9432 8.685257 ATGATATATAACCCTGGATTGAGTCA 57.315 34.615 0.00 0.00 0.00 3.41
7475 9437 9.632638 CCCTTTATGATATATAACCCTGGATTG 57.367 37.037 0.00 0.00 0.00 2.67
7476 9438 8.282256 GCCCTTTATGATATATAACCCTGGATT 58.718 37.037 0.00 0.00 0.00 3.01
7477 9439 7.633391 AGCCCTTTATGATATATAACCCTGGAT 59.367 37.037 0.00 0.00 0.00 3.41
7478 9440 6.971840 AGCCCTTTATGATATATAACCCTGGA 59.028 38.462 0.00 0.00 0.00 3.86
7479 9441 7.213178 AGCCCTTTATGATATATAACCCTGG 57.787 40.000 0.00 0.00 0.00 4.45
7480 9442 7.557719 CCAAGCCCTTTATGATATATAACCCTG 59.442 40.741 0.00 0.00 0.00 4.45
7481 9443 7.241888 ACCAAGCCCTTTATGATATATAACCCT 59.758 37.037 0.00 0.00 0.00 4.34
7482 9444 7.410991 ACCAAGCCCTTTATGATATATAACCC 58.589 38.462 0.00 0.00 0.00 4.11
7483 9445 8.739972 CAACCAAGCCCTTTATGATATATAACC 58.260 37.037 0.00 0.00 0.00 2.85
7484 9446 8.739972 CCAACCAAGCCCTTTATGATATATAAC 58.260 37.037 0.00 0.00 0.00 1.89
7485 9447 8.452868 ACCAACCAAGCCCTTTATGATATATAA 58.547 33.333 0.00 0.00 0.00 0.98
7486 9448 7.995663 ACCAACCAAGCCCTTTATGATATATA 58.004 34.615 0.00 0.00 0.00 0.86
7487 9449 6.863322 ACCAACCAAGCCCTTTATGATATAT 58.137 36.000 0.00 0.00 0.00 0.86
7488 9450 6.274322 ACCAACCAAGCCCTTTATGATATA 57.726 37.500 0.00 0.00 0.00 0.86
7489 9451 5.142806 ACCAACCAAGCCCTTTATGATAT 57.857 39.130 0.00 0.00 0.00 1.63
7490 9452 4.601406 ACCAACCAAGCCCTTTATGATA 57.399 40.909 0.00 0.00 0.00 2.15
7491 9453 3.473113 ACCAACCAAGCCCTTTATGAT 57.527 42.857 0.00 0.00 0.00 2.45
7492 9454 2.990740 ACCAACCAAGCCCTTTATGA 57.009 45.000 0.00 0.00 0.00 2.15
7493 9455 3.384467 CCATACCAACCAAGCCCTTTATG 59.616 47.826 0.00 0.00 0.00 1.90
7494 9456 3.642141 CCATACCAACCAAGCCCTTTAT 58.358 45.455 0.00 0.00 0.00 1.40
7495 9457 2.886391 GCCATACCAACCAAGCCCTTTA 60.886 50.000 0.00 0.00 0.00 1.85
7496 9458 1.937191 CCATACCAACCAAGCCCTTT 58.063 50.000 0.00 0.00 0.00 3.11
7497 9459 0.614697 GCCATACCAACCAAGCCCTT 60.615 55.000 0.00 0.00 0.00 3.95
7498 9460 1.000359 GCCATACCAACCAAGCCCT 60.000 57.895 0.00 0.00 0.00 5.19
7499 9461 2.058001 GGCCATACCAACCAAGCCC 61.058 63.158 0.00 0.00 38.86 5.19
7500 9462 2.058001 GGGCCATACCAACCAAGCC 61.058 63.158 4.39 0.00 42.05 4.35
7501 9463 0.902516 TTGGGCCATACCAACCAAGC 60.903 55.000 7.26 0.00 45.19 4.01
7502 9464 3.372557 TTGGGCCATACCAACCAAG 57.627 52.632 7.26 0.00 45.19 3.61
7508 9470 0.482446 GATGGGATTGGGCCATACCA 59.518 55.000 24.10 22.94 42.05 3.25
7509 9471 0.482446 TGATGGGATTGGGCCATACC 59.518 55.000 7.26 14.06 37.93 2.73
7510 9472 2.610438 ATGATGGGATTGGGCCATAC 57.390 50.000 7.26 4.27 0.00 2.39
7511 9473 3.634218 AAATGATGGGATTGGGCCATA 57.366 42.857 7.26 0.00 0.00 2.74
7512 9474 2.500269 AAATGATGGGATTGGGCCAT 57.500 45.000 7.26 0.00 0.00 4.40
7513 9475 3.411454 TTAAATGATGGGATTGGGCCA 57.589 42.857 0.00 0.00 0.00 5.36
7514 9476 4.347583 TCATTTAAATGATGGGATTGGGCC 59.652 41.667 23.86 0.00 40.32 5.80
7515 9477 5.305128 TCTCATTTAAATGATGGGATTGGGC 59.695 40.000 26.83 0.00 43.87 5.36
7516 9478 6.552350 ACTCTCATTTAAATGATGGGATTGGG 59.448 38.462 26.83 17.18 43.87 4.12
7517 9479 7.431249 CACTCTCATTTAAATGATGGGATTGG 58.569 38.462 26.83 14.92 43.87 3.16
7518 9480 7.286087 TCCACTCTCATTTAAATGATGGGATTG 59.714 37.037 30.95 24.94 43.87 2.67
7519 9481 7.356680 TCCACTCTCATTTAAATGATGGGATT 58.643 34.615 30.95 18.81 43.87 3.01
7520 9482 6.914665 TCCACTCTCATTTAAATGATGGGAT 58.085 36.000 30.95 16.39 43.87 3.85
7521 9483 6.325993 TCCACTCTCATTTAAATGATGGGA 57.674 37.500 30.95 26.86 43.87 4.37
7522 9484 6.072838 CGATCCACTCTCATTTAAATGATGGG 60.073 42.308 30.95 25.71 43.87 4.00
7523 9485 6.707608 TCGATCCACTCTCATTTAAATGATGG 59.292 38.462 28.43 28.43 43.87 3.51
7524 9486 7.095313 CCTCGATCCACTCTCATTTAAATGATG 60.095 40.741 26.83 21.78 43.87 3.07
7525 9487 6.933521 CCTCGATCCACTCTCATTTAAATGAT 59.066 38.462 26.83 13.30 43.87 2.45
7526 9488 6.283694 CCTCGATCCACTCTCATTTAAATGA 58.716 40.000 25.44 25.44 42.78 2.57
7527 9489 5.468072 CCCTCGATCCACTCTCATTTAAATG 59.532 44.000 20.13 20.13 37.75 2.32
7528 9490 5.131142 ACCCTCGATCCACTCTCATTTAAAT 59.869 40.000 0.00 0.00 0.00 1.40
7529 9491 4.469945 ACCCTCGATCCACTCTCATTTAAA 59.530 41.667 0.00 0.00 0.00 1.52
7530 9492 4.030913 ACCCTCGATCCACTCTCATTTAA 58.969 43.478 0.00 0.00 0.00 1.52
7531 9493 3.384789 CACCCTCGATCCACTCTCATTTA 59.615 47.826 0.00 0.00 0.00 1.40
7532 9494 2.169352 CACCCTCGATCCACTCTCATTT 59.831 50.000 0.00 0.00 0.00 2.32
7533 9495 1.759445 CACCCTCGATCCACTCTCATT 59.241 52.381 0.00 0.00 0.00 2.57
7534 9496 1.063642 TCACCCTCGATCCACTCTCAT 60.064 52.381 0.00 0.00 0.00 2.90
7535 9497 0.331616 TCACCCTCGATCCACTCTCA 59.668 55.000 0.00 0.00 0.00 3.27
7536 9498 1.339610 CATCACCCTCGATCCACTCTC 59.660 57.143 0.00 0.00 0.00 3.20
7537 9499 1.407936 CATCACCCTCGATCCACTCT 58.592 55.000 0.00 0.00 0.00 3.24
7538 9500 0.249657 GCATCACCCTCGATCCACTC 60.250 60.000 0.00 0.00 0.00 3.51
7539 9501 1.690219 GGCATCACCCTCGATCCACT 61.690 60.000 0.00 0.00 0.00 4.00
7540 9502 1.227674 GGCATCACCCTCGATCCAC 60.228 63.158 0.00 0.00 0.00 4.02
7541 9503 1.383109 AGGCATCACCCTCGATCCA 60.383 57.895 0.00 0.00 40.58 3.41
7542 9504 1.070445 CAGGCATCACCCTCGATCC 59.930 63.158 0.00 0.00 40.58 3.36
7543 9505 1.596477 GCAGGCATCACCCTCGATC 60.596 63.158 0.00 0.00 40.58 3.69
7544 9506 0.760567 TAGCAGGCATCACCCTCGAT 60.761 55.000 0.00 0.00 40.58 3.59
7545 9507 1.381191 TAGCAGGCATCACCCTCGA 60.381 57.895 0.00 0.00 40.58 4.04
7546 9508 1.068753 CTAGCAGGCATCACCCTCG 59.931 63.158 0.00 0.00 40.58 4.63
7547 9509 0.543749 AACTAGCAGGCATCACCCTC 59.456 55.000 0.00 0.00 40.58 4.30
7548 9510 0.254178 CAACTAGCAGGCATCACCCT 59.746 55.000 0.00 0.00 40.58 4.34
7549 9511 0.749454 CCAACTAGCAGGCATCACCC 60.749 60.000 0.00 0.00 40.58 4.61
7550 9512 0.035056 ACCAACTAGCAGGCATCACC 60.035 55.000 1.13 0.00 39.61 4.02
7551 9513 1.470098 CAACCAACTAGCAGGCATCAC 59.530 52.381 1.13 0.00 0.00 3.06
8251 10218 1.153289 CCTCATCGGGTTCCTGCTG 60.153 63.158 0.00 0.00 0.00 4.41
8610 10607 4.214437 GAGTCAATGCTCAAACAAAGACG 58.786 43.478 0.95 0.00 34.48 4.18
9420 11420 1.683319 GGGAGTTCAGGGGATTTCTGC 60.683 57.143 0.00 0.00 32.63 4.26
9461 11461 0.331616 GTTGGGCCTGTCCAATACCT 59.668 55.000 6.48 0.00 46.97 3.08
9497 11497 3.181465 TGTCTCCTCTCACACAAGGTTTC 60.181 47.826 0.00 0.00 34.12 2.78
9529 11529 2.815158 GGCAAGTAATTTTCTCCCCCA 58.185 47.619 0.00 0.00 0.00 4.96
9539 11539 2.224917 TGGAGGGTTTCGGCAAGTAATT 60.225 45.455 0.00 0.00 0.00 1.40
9540 11540 1.353022 TGGAGGGTTTCGGCAAGTAAT 59.647 47.619 0.00 0.00 0.00 1.89
9581 11581 1.133167 TCAGTTGGTCTGAGGGACTGA 60.133 52.381 10.91 10.91 46.77 3.41
9582 11582 1.342074 TCAGTTGGTCTGAGGGACTG 58.658 55.000 7.52 7.52 46.77 3.51
9583 11583 3.871623 TCAGTTGGTCTGAGGGACT 57.128 52.632 0.00 0.00 46.77 3.85
9656 11656 1.550065 CGACGCAGATTCGATCTTGT 58.450 50.000 0.00 0.00 38.85 3.16
9659 11659 1.299468 GGCGACGCAGATTCGATCT 60.299 57.895 23.09 0.00 38.85 2.75
9663 11663 3.257561 CCTGGCGACGCAGATTCG 61.258 66.667 23.09 0.00 39.56 3.34
9780 11782 6.514063 GTGTATAATACTCCTTCTGTCCCAC 58.486 44.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.