Multiple sequence alignment - TraesCS7D01G363100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G363100 chr7D 100.000 6488 0 0 1 6488 467165447 467158960 0.000000e+00 11982.0
1 TraesCS7D01G363100 chr7D 86.230 443 53 3 6043 6477 467044339 467043897 2.120000e-129 473.0
2 TraesCS7D01G363100 chr7D 89.062 320 29 5 4367 4686 467044761 467044448 6.100000e-105 392.0
3 TraesCS7D01G363100 chr7D 98.684 152 2 0 5750 5901 467159550 467159399 2.980000e-68 270.0
4 TraesCS7D01G363100 chr7D 98.684 152 2 0 5898 6049 467159698 467159547 2.980000e-68 270.0
5 TraesCS7D01G363100 chr7D 87.500 192 17 3 4117 4301 467045104 467044913 1.420000e-51 215.0
6 TraesCS7D01G363100 chr7D 95.652 46 2 0 4663 4708 467044422 467044377 2.510000e-09 75.0
7 TraesCS7D01G363100 chr7D 90.000 50 5 0 1208 1257 496720097 496720048 1.510000e-06 65.8
8 TraesCS7D01G363100 chr7A 91.677 1598 105 19 549 2132 533578332 533579915 0.000000e+00 2189.0
9 TraesCS7D01G363100 chr7A 92.015 1052 59 7 2947 3976 533581278 533582326 0.000000e+00 1454.0
10 TraesCS7D01G363100 chr7A 92.447 940 60 5 3118 4052 565439934 565439001 0.000000e+00 1332.0
11 TraesCS7D01G363100 chr7A 92.063 567 43 2 5924 6488 533582427 533582993 0.000000e+00 797.0
12 TraesCS7D01G363100 chr7A 95.422 415 14 3 2535 2948 533580765 533581175 0.000000e+00 656.0
13 TraesCS7D01G363100 chr7A 88.298 470 43 4 5158 5627 533596076 533596533 2.640000e-153 553.0
14 TraesCS7D01G363100 chr7A 94.318 352 18 1 2129 2478 533580017 533580368 7.400000e-149 538.0
15 TraesCS7D01G363100 chr7A 93.031 287 20 0 3976 4262 533585932 533586218 2.800000e-113 420.0
16 TraesCS7D01G363100 chr7A 92.248 258 19 1 6226 6482 533598354 533598611 1.330000e-96 364.0
17 TraesCS7D01G363100 chr7A 92.742 248 16 1 4056 4301 565438948 565438701 2.220000e-94 357.0
18 TraesCS7D01G363100 chr7A 83.208 399 39 11 4793 5174 533586514 533586901 2.240000e-89 340.0
19 TraesCS7D01G363100 chr7A 87.671 292 19 5 4524 4810 533586218 533586497 2.260000e-84 324.0
20 TraesCS7D01G363100 chr7A 94.488 127 6 1 5776 5901 533582427 533582553 1.850000e-45 195.0
21 TraesCS7D01G363100 chr7A 85.714 84 10 2 4145 4227 78714336 78714254 3.220000e-13 87.9
22 TraesCS7D01G363100 chr7B 89.852 1626 87 29 543 2122 490684159 490682566 0.000000e+00 2017.0
23 TraesCS7D01G363100 chr7B 90.395 1291 111 11 4374 5654 490679494 490678207 0.000000e+00 1685.0
24 TraesCS7D01G363100 chr7B 95.315 555 23 3 2199 2752 490682564 490682012 0.000000e+00 878.0
25 TraesCS7D01G363100 chr7B 92.233 618 26 6 2944 3540 490681709 490681093 0.000000e+00 856.0
26 TraesCS7D01G363100 chr7B 93.816 566 33 2 5924 6488 490678090 490677526 0.000000e+00 850.0
27 TraesCS7D01G363100 chr7B 95.501 489 19 2 3559 4047 490680524 490680039 0.000000e+00 778.0
28 TraesCS7D01G363100 chr7B 86.420 567 54 7 5924 6488 490674044 490673499 3.350000e-167 599.0
29 TraesCS7D01G363100 chr7B 91.255 263 21 1 4056 4316 490679971 490679709 2.220000e-94 357.0
30 TraesCS7D01G363100 chr7B 97.368 190 5 0 2737 2926 490681998 490681809 2.260000e-84 324.0
31 TraesCS7D01G363100 chr7B 92.913 127 7 2 5776 5901 490678090 490677965 4.000000e-42 183.0
32 TraesCS7D01G363100 chr7B 90.299 134 11 2 5776 5908 490674044 490673912 2.400000e-39 174.0
33 TraesCS7D01G363100 chr7B 90.000 50 5 0 1208 1257 524811837 524811788 1.510000e-06 65.8
34 TraesCS7D01G363100 chr6A 91.915 940 57 9 3115 4049 68977233 68978158 0.000000e+00 1297.0
35 TraesCS7D01G363100 chr6A 91.935 248 18 1 4056 4301 68978214 68978461 4.820000e-91 346.0
36 TraesCS7D01G363100 chr6D 88.707 549 56 6 1 544 110724375 110724922 0.000000e+00 665.0
37 TraesCS7D01G363100 chr3B 85.915 568 58 13 1 546 360115076 360114509 2.610000e-163 586.0
38 TraesCS7D01G363100 chr3B 86.131 548 65 9 1 544 736254402 736253862 1.210000e-161 580.0
39 TraesCS7D01G363100 chr3B 83.659 563 65 19 1 546 672372124 672371572 7.510000e-139 505.0
40 TraesCS7D01G363100 chr1D 87.018 493 49 10 64 544 203924604 203925093 5.720000e-150 542.0
41 TraesCS7D01G363100 chr1B 84.685 555 71 9 1 546 647038849 647038300 5.720000e-150 542.0
42 TraesCS7D01G363100 chr1B 84.712 556 66 14 1 546 101159059 101159605 7.400000e-149 538.0
43 TraesCS7D01G363100 chr2B 83.784 555 72 14 1 544 744055758 744056305 1.610000e-140 510.0
44 TraesCS7D01G363100 chr2B 84.906 53 8 0 1205 1257 504207769 504207717 3.000000e-03 54.7
45 TraesCS7D01G363100 chr4B 83.453 556 71 16 1 544 522289340 522288794 1.260000e-136 497.0
46 TraesCS7D01G363100 chr4B 87.387 111 14 0 5112 5222 514049433 514049543 1.900000e-25 128.0
47 TraesCS7D01G363100 chr3D 88.158 380 34 6 172 544 576750360 576750735 5.970000e-120 442.0
48 TraesCS7D01G363100 chr1A 92.333 300 19 1 3201 3496 543395290 543395589 2.160000e-114 424.0
49 TraesCS7D01G363100 chr1A 90.244 164 14 1 4140 4301 543395601 543395764 5.100000e-51 213.0
50 TraesCS7D01G363100 chr1A 94.776 134 7 0 3115 3248 543393862 543393995 6.590000e-50 209.0
51 TraesCS7D01G363100 chr4A 87.000 100 13 0 5112 5211 47287000 47286901 5.320000e-21 113.0
52 TraesCS7D01G363100 chr4D 90.000 50 5 0 1208 1257 60170041 60169992 1.510000e-06 65.8
53 TraesCS7D01G363100 chr4D 90.000 50 5 0 1208 1257 60175968 60176017 1.510000e-06 65.8
54 TraesCS7D01G363100 chr2D 84.906 53 8 0 1205 1257 427336558 427336506 3.000000e-03 54.7
55 TraesCS7D01G363100 chr2A 100.000 29 0 0 4928 4956 561025633 561025661 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G363100 chr7D 467158960 467165447 6487 True 11982.000000 11982 100.000000 1 6488 1 chr7D.!!$R1 6487
1 TraesCS7D01G363100 chr7D 467043897 467045104 1207 True 288.750000 473 89.611000 4117 6477 4 chr7D.!!$R3 2360
2 TraesCS7D01G363100 chr7A 565438701 565439934 1233 True 844.500000 1332 92.594500 3118 4301 2 chr7A.!!$R2 1183
3 TraesCS7D01G363100 chr7A 533578332 533586901 8569 False 768.111111 2189 91.543667 549 6488 9 chr7A.!!$F1 5939
4 TraesCS7D01G363100 chr7A 533596076 533598611 2535 False 458.500000 553 90.273000 5158 6482 2 chr7A.!!$F2 1324
5 TraesCS7D01G363100 chr7B 490673499 490684159 10660 True 791.000000 2017 92.306091 543 6488 11 chr7B.!!$R2 5945
6 TraesCS7D01G363100 chr6A 68977233 68978461 1228 False 821.500000 1297 91.925000 3115 4301 2 chr6A.!!$F1 1186
7 TraesCS7D01G363100 chr6D 110724375 110724922 547 False 665.000000 665 88.707000 1 544 1 chr6D.!!$F1 543
8 TraesCS7D01G363100 chr3B 360114509 360115076 567 True 586.000000 586 85.915000 1 546 1 chr3B.!!$R1 545
9 TraesCS7D01G363100 chr3B 736253862 736254402 540 True 580.000000 580 86.131000 1 544 1 chr3B.!!$R3 543
10 TraesCS7D01G363100 chr3B 672371572 672372124 552 True 505.000000 505 83.659000 1 546 1 chr3B.!!$R2 545
11 TraesCS7D01G363100 chr1B 647038300 647038849 549 True 542.000000 542 84.685000 1 546 1 chr1B.!!$R1 545
12 TraesCS7D01G363100 chr1B 101159059 101159605 546 False 538.000000 538 84.712000 1 546 1 chr1B.!!$F1 545
13 TraesCS7D01G363100 chr2B 744055758 744056305 547 False 510.000000 510 83.784000 1 544 1 chr2B.!!$F1 543
14 TraesCS7D01G363100 chr4B 522288794 522289340 546 True 497.000000 497 83.453000 1 544 1 chr4B.!!$R1 543
15 TraesCS7D01G363100 chr1A 543393862 543395764 1902 False 282.000000 424 92.451000 3115 4301 3 chr1A.!!$F1 1186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 716 0.029834 CAAGCTGAGGCAACACACAC 59.970 55.000 0.00 0.0 41.70 3.82 F
2496 2737 0.031010 AAGAGGCCGGATTACTCCCT 60.031 55.000 5.05 0.0 38.45 4.20 F
3438 5525 1.153524 TCAACCAGGCAGGCATTGT 59.846 52.632 0.00 0.0 43.14 2.71 F
4049 10292 1.275573 AGGAAGAAGTACAAGGTCGGC 59.724 52.381 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2629 3213 0.978907 GGTCCCCACCTTTTCGACTA 59.021 55.0 0.00 0.00 40.00 2.59 R
4387 10982 0.107654 AATCGCCGAAGAAGAAGGGG 60.108 55.0 0.00 0.00 39.06 4.79 R
4459 11054 0.329261 TCACCAGATGGGCCTCTTTG 59.671 55.0 4.53 5.27 42.05 2.77 R
5787 12491 0.038892 CGCAAAACAGAGCATGCCTT 60.039 50.0 15.66 0.00 35.41 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 167 1.546923 TCATTGAGCACCATTGGCAAG 59.453 47.619 5.96 0.00 0.00 4.01
233 240 7.872163 TCATGACAAGTTTTGTATTGCATTC 57.128 32.000 0.00 0.00 45.52 2.67
375 450 0.533755 AACAGCGCAAAGAGCAGACT 60.534 50.000 11.47 0.00 46.13 3.24
384 459 0.394565 AAGAGCAGACTCCGCAAAGT 59.605 50.000 0.00 0.00 44.65 2.66
391 466 2.342279 CTCCGCAAAGTCGACCCA 59.658 61.111 13.01 0.00 0.00 4.51
442 523 2.841317 GGGTCCGTTTGAGGGGTT 59.159 61.111 0.00 0.00 0.00 4.11
445 526 0.466739 GGTCCGTTTGAGGGGTTTGT 60.467 55.000 0.00 0.00 0.00 2.83
546 627 3.195825 GGGTCTGCTAGAGTTGCTCTAAA 59.804 47.826 7.22 0.00 41.74 1.85
635 716 0.029834 CAAGCTGAGGCAACACACAC 59.970 55.000 0.00 0.00 41.70 3.82
636 717 0.394216 AAGCTGAGGCAACACACACA 60.394 50.000 0.00 0.00 41.70 3.72
637 718 1.097547 AGCTGAGGCAACACACACAC 61.098 55.000 0.00 0.00 41.70 3.82
638 719 1.375853 GCTGAGGCAACACACACACA 61.376 55.000 0.00 0.00 38.54 3.72
639 720 0.659427 CTGAGGCAACACACACACAG 59.341 55.000 0.00 0.00 41.41 3.66
640 721 0.035534 TGAGGCAACACACACACAGT 60.036 50.000 0.00 0.00 41.41 3.55
641 722 1.208293 TGAGGCAACACACACACAGTA 59.792 47.619 0.00 0.00 41.41 2.74
643 724 1.209504 AGGCAACACACACACAGTACT 59.790 47.619 0.00 0.00 41.41 2.73
656 737 1.808945 ACAGTACTGTACGTTCCTCCG 59.191 52.381 26.91 0.00 42.90 4.63
659 740 1.647545 TACTGTACGTTCCTCCGCCG 61.648 60.000 0.00 0.00 0.00 6.46
813 901 1.142474 GCATTTCAGCAACAGCAACC 58.858 50.000 0.00 0.00 0.00 3.77
838 927 4.420206 TCCTCTCTGAACATTCCTCTTGA 58.580 43.478 0.00 0.00 0.00 3.02
961 1078 2.239681 TGGGGACTCTTCTCTCCTTC 57.760 55.000 0.00 0.00 0.00 3.46
965 1082 4.202792 TGGGGACTCTTCTCTCCTTCTAAA 60.203 45.833 0.00 0.00 0.00 1.85
983 1100 5.520632 TCTAAACAACACGAGACTTCTCTG 58.479 41.667 4.76 4.85 40.75 3.35
1096 1221 0.384669 GAAGAGGATGGCATGCAAGC 59.615 55.000 21.36 11.74 0.00 4.01
1139 1264 3.646942 TTGTGGTGTGGTTGGCCGT 62.647 57.895 0.00 0.00 37.67 5.68
1188 1313 2.284699 ACGAGGGGGAGTGGGAAG 60.285 66.667 0.00 0.00 0.00 3.46
1239 1364 4.287781 TTCGTCTTCGGCACCGCA 62.288 61.111 3.66 0.00 39.59 5.69
1267 1392 4.510571 CGCCTACCAGGTAGTAACAATTT 58.489 43.478 23.04 0.00 37.80 1.82
1325 1450 7.467557 TTTTTGTGAAGTTCTTGCATTGATC 57.532 32.000 4.17 0.00 0.00 2.92
1384 1509 5.001232 TCACTTAATTGGCTAGTGTGTTCC 58.999 41.667 0.00 0.00 40.08 3.62
1405 1530 4.101585 TCCTTTCACATAATCGATGGAGCT 59.898 41.667 0.00 0.00 40.18 4.09
1428 1553 2.359531 CCCTCGTCTTCTCTGTGGTATC 59.640 54.545 0.00 0.00 0.00 2.24
1448 1573 8.528643 TGGTATCGGATCTGTTATAAATCGATT 58.471 33.333 4.39 4.39 0.00 3.34
1661 1790 6.030228 GTCGATGCCTCCTTTGAAAAATAAG 58.970 40.000 0.00 0.00 0.00 1.73
1666 1795 7.301868 TGCCTCCTTTGAAAAATAAGACATT 57.698 32.000 0.00 0.00 0.00 2.71
1760 1889 0.596082 CCCCGTTTGGATGTTGACAC 59.404 55.000 0.00 0.00 37.49 3.67
1818 1947 6.127647 GGAGTTGGATTTGAAGATTGTGCATA 60.128 38.462 0.00 0.00 0.00 3.14
1894 2023 3.425713 CACATGCGCGCAAGGACT 61.426 61.111 39.68 19.40 38.28 3.85
1939 2068 4.887071 ACAGGAGTTAGAATTTTGCACACA 59.113 37.500 0.00 0.00 0.00 3.72
1996 2125 1.068679 GCTCAAAGCAAGCAGGAACTC 60.069 52.381 0.00 0.00 41.89 3.01
1997 2126 2.224606 CTCAAAGCAAGCAGGAACTCA 58.775 47.619 0.00 0.00 34.60 3.41
1998 2127 2.224606 TCAAAGCAAGCAGGAACTCAG 58.775 47.619 0.00 0.00 34.60 3.35
2048 2179 6.255215 GCATAGTAAATTACTCTTGCGCAAA 58.745 36.000 25.01 9.31 37.89 3.68
2123 2257 6.628919 AATAATTAGCCAAACGTACCCATC 57.371 37.500 0.00 0.00 0.00 3.51
2161 2400 2.362077 GTGGTGCACTGAAAAGGAATGT 59.638 45.455 17.98 0.00 0.00 2.71
2174 2413 7.006509 TGAAAAGGAATGTTCTCCAGAAGAAT 58.993 34.615 0.00 0.00 45.57 2.40
2266 2505 8.947115 GGTAAAATCATAGCTAAGTTGTCTTGT 58.053 33.333 0.00 0.00 35.36 3.16
2319 2558 7.119387 TGACTCACTGACTCCTCATCTTTATA 58.881 38.462 0.00 0.00 0.00 0.98
2458 2699 7.221450 ACACTACATAACACACTAAACATGGT 58.779 34.615 0.00 0.00 0.00 3.55
2468 2709 4.099266 ACACTAAACATGGTTGTGTGCATT 59.901 37.500 22.55 8.32 39.90 3.56
2496 2737 0.031010 AAGAGGCCGGATTACTCCCT 60.031 55.000 5.05 0.00 38.45 4.20
2498 2739 1.459730 AGGCCGGATTACTCCCTCC 60.460 63.158 5.05 0.00 38.45 4.30
2500 2741 1.749033 GCCGGATTACTCCCTCCAG 59.251 63.158 5.05 0.00 38.45 3.86
2513 2754 3.173965 TCCCTCCAGTCGAAGAAGAAAT 58.826 45.455 0.00 0.00 39.69 2.17
2515 2756 4.775780 TCCCTCCAGTCGAAGAAGAAATAA 59.224 41.667 0.00 0.00 39.69 1.40
2516 2757 4.870991 CCCTCCAGTCGAAGAAGAAATAAC 59.129 45.833 0.00 0.00 39.69 1.89
2626 3210 6.039717 TCTCAGTTTTGGGAAGATGACTTTTG 59.960 38.462 0.00 0.00 36.39 2.44
2628 3212 6.831353 TCAGTTTTGGGAAGATGACTTTTGTA 59.169 34.615 0.00 0.00 36.39 2.41
2629 3213 7.505585 TCAGTTTTGGGAAGATGACTTTTGTAT 59.494 33.333 0.00 0.00 36.39 2.29
2631 3215 9.014297 AGTTTTGGGAAGATGACTTTTGTATAG 57.986 33.333 0.00 0.00 36.39 1.31
2806 3419 1.843368 TCTGTTGGTAGTACGAGGGG 58.157 55.000 0.00 0.00 0.00 4.79
2830 3443 2.019984 GTCAATGTGGATGGAAGAGGC 58.980 52.381 0.00 0.00 0.00 4.70
3116 3857 9.657419 ATTAACGCATCAAGATGATACATATCA 57.343 29.630 13.93 4.11 45.78 2.15
3145 3886 6.794374 TGAACATGAGCGTTTAATTATGCAT 58.206 32.000 3.79 3.79 32.39 3.96
3146 3887 7.257003 TGAACATGAGCGTTTAATTATGCATT 58.743 30.769 3.54 0.00 32.39 3.56
3335 5418 3.578688 CTGATAAACAGGCTTGCCAAAC 58.421 45.455 14.54 0.00 42.39 2.93
3339 5422 5.480073 TGATAAACAGGCTTGCCAAACTATT 59.520 36.000 14.54 3.04 0.00 1.73
3436 5523 1.607467 GGTCAACCAGGCAGGCATT 60.607 57.895 0.00 0.00 43.14 3.56
3438 5525 1.153524 TCAACCAGGCAGGCATTGT 59.846 52.632 0.00 0.00 43.14 2.71
3469 5556 2.414994 AGGTCATTGATGCACTCCTG 57.585 50.000 0.00 0.00 0.00 3.86
3588 6224 4.884247 AGCTCACTAACAAGGTGAACTAC 58.116 43.478 0.00 0.00 42.15 2.73
3594 6230 9.268268 CTCACTAACAAGGTGAACTACAATTAA 57.732 33.333 0.00 0.00 42.15 1.40
3741 6378 4.216472 GGAGCAACTTTTTCTTGGGTCTAG 59.784 45.833 0.00 0.00 0.00 2.43
3778 6415 6.259829 GTCTAACAACCAAACCATGCAAATTT 59.740 34.615 0.00 0.00 0.00 1.82
4028 10271 2.738643 CGCCACGGTTTCAGACATCTAT 60.739 50.000 0.00 0.00 0.00 1.98
4049 10292 1.275573 AGGAAGAAGTACAAGGTCGGC 59.724 52.381 0.00 0.00 0.00 5.54
4091 10393 1.544724 TGGGCCTGAAGTTGCAATAC 58.455 50.000 0.59 0.00 0.00 1.89
4216 10523 2.300152 CCTGTCTCAAACTCCACAGCTA 59.700 50.000 0.00 0.00 35.83 3.32
4230 10537 1.815421 AGCTAATGTTGAGGCCGCG 60.815 57.895 0.00 0.00 0.00 6.46
4297 10606 8.880750 ACTCGCTAACTTCATTAACTATTTTCC 58.119 33.333 0.00 0.00 0.00 3.13
4308 10617 6.845758 TTAACTATTTTCCACTCTCTCCGA 57.154 37.500 0.00 0.00 0.00 4.55
4309 10618 5.941555 AACTATTTTCCACTCTCTCCGAT 57.058 39.130 0.00 0.00 0.00 4.18
4316 10625 3.910989 TCCACTCTCTCCGATCCATAAA 58.089 45.455 0.00 0.00 0.00 1.40
4317 10626 4.286707 TCCACTCTCTCCGATCCATAAAA 58.713 43.478 0.00 0.00 0.00 1.52
4318 10627 4.714802 TCCACTCTCTCCGATCCATAAAAA 59.285 41.667 0.00 0.00 0.00 1.94
4319 10628 5.053145 CCACTCTCTCCGATCCATAAAAAG 58.947 45.833 0.00 0.00 0.00 2.27
4320 10629 5.395768 CCACTCTCTCCGATCCATAAAAAGT 60.396 44.000 0.00 0.00 0.00 2.66
4322 10631 5.187967 ACTCTCTCCGATCCATAAAAAGTGT 59.812 40.000 0.00 0.00 0.00 3.55
4325 10634 2.933906 TCCGATCCATAAAAAGTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
4326 10635 2.675844 CCGATCCATAAAAAGTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
4327 10636 3.485216 CCGATCCATAAAAAGTGTCGCAC 60.485 47.826 2.28 2.28 34.10 5.34
4402 10997 1.448013 CGACCCCTTCTTCTTCGGC 60.448 63.158 0.00 0.00 0.00 5.54
4432 11027 1.471676 GCGACAATGAGATCGAGGGTT 60.472 52.381 0.00 0.00 40.86 4.11
4469 11064 1.177401 GTTCATGACCAAAGAGGCCC 58.823 55.000 0.00 0.00 43.14 5.80
4528 11123 6.014584 TCAATCACTACACCACATTCTACACT 60.015 38.462 0.00 0.00 0.00 3.55
4635 11230 6.383436 AGTTCCTACCCCTCTTGTATCTTTAC 59.617 42.308 0.00 0.00 0.00 2.01
4733 11377 6.356556 TGGAGATAAGGTAACCATCACATTG 58.643 40.000 0.00 0.00 32.32 2.82
4777 11424 7.601073 TTTTGTGTTGTAATGTTGCATTTGA 57.399 28.000 0.00 0.00 0.00 2.69
4782 11429 8.671921 TGTGTTGTAATGTTGCATTTGAATTTT 58.328 25.926 0.00 0.00 0.00 1.82
4817 11502 7.285566 ACTGTAGGCATCATGACTGAATATTT 58.714 34.615 2.03 0.00 35.73 1.40
4833 11518 1.726853 ATTTCTCTTGTTCGCCTCCG 58.273 50.000 0.00 0.00 0.00 4.63
4851 11536 1.295357 CGTACGTGCAGGCCAATTCA 61.295 55.000 5.01 0.00 0.00 2.57
4887 11572 2.192443 CCTGGCAGCATGAGGAGG 59.808 66.667 9.56 0.00 39.69 4.30
4971 11665 8.188531 GCAAGTACATGCACAATATGAATTTT 57.811 30.769 17.73 0.00 45.70 1.82
5009 11704 6.204359 CAAAACACTGAAAGAGATGGAACAG 58.796 40.000 0.00 0.00 39.28 3.16
5013 11708 5.529060 ACACTGAAAGAGATGGAACAGAAAC 59.471 40.000 0.00 0.00 39.28 2.78
5027 11722 3.279434 ACAGAAACCGCTTCAGAGTTTT 58.721 40.909 0.00 0.00 36.40 2.43
5034 11729 4.642429 ACCGCTTCAGAGTTTTATGAACT 58.358 39.130 0.00 0.00 31.64 3.01
5051 11753 8.800370 TTATGAACTTAACAAGGATGTGCATA 57.200 30.769 0.00 0.00 40.46 3.14
5054 11756 7.761409 TGAACTTAACAAGGATGTGCATATTC 58.239 34.615 0.00 0.00 40.46 1.75
5071 11773 9.229784 GTGCATATTCTCAATCAAGTGTAATTG 57.770 33.333 0.00 0.00 34.80 2.32
5096 11800 6.751514 TGTGCCTTCGACATAACATTAAAT 57.248 33.333 0.00 0.00 0.00 1.40
5097 11801 6.550843 TGTGCCTTCGACATAACATTAAATG 58.449 36.000 0.00 0.00 0.00 2.32
5104 11808 9.694520 CTTCGACATAACATTAAATGAACTCTG 57.305 33.333 0.00 0.00 0.00 3.35
5217 11921 5.690464 ACCTCACAAATCTAGCTGATTCT 57.310 39.130 10.52 1.96 43.99 2.40
5232 11936 6.284459 AGCTGATTCTATAAGGTGCTAACAC 58.716 40.000 0.00 0.00 46.66 3.32
5233 11937 6.098982 AGCTGATTCTATAAGGTGCTAACACT 59.901 38.462 0.00 0.00 46.57 3.55
5257 11961 3.887621 TTACCTTCCCTTGATCAGTCG 57.112 47.619 0.00 0.00 0.00 4.18
5260 11964 2.637872 ACCTTCCCTTGATCAGTCGAAA 59.362 45.455 0.00 0.00 0.00 3.46
5274 11978 6.861065 TCAGTCGAAACTTCTTTTGCTATT 57.139 33.333 0.00 0.00 31.71 1.73
5282 11986 9.994432 CGAAACTTCTTTTGCTATTCATAGATT 57.006 29.630 0.00 0.00 32.05 2.40
5307 12011 8.410673 TGGTTAATCTTTGGTACTGCAATTTA 57.589 30.769 0.00 0.00 0.00 1.40
5322 12026 1.213296 ATTTATGCAGGGAGGACGGT 58.787 50.000 0.00 0.00 0.00 4.83
5376 12080 1.276421 CTCGACAATTGGGAGTGGACT 59.724 52.381 10.83 0.00 0.00 3.85
5391 12095 0.103208 GGACTGCTGGATACACCTCG 59.897 60.000 0.00 0.00 46.17 4.63
5412 12116 2.921754 GAGATTCGGGTTGTACTTCGTG 59.078 50.000 0.00 0.00 0.00 4.35
5472 12176 4.580167 TCAGTCCAGTGGTTCAAGAATTTG 59.420 41.667 9.54 0.00 35.57 2.32
5521 12225 8.427902 TGATAGCTAATGTAGAGGTCATGATT 57.572 34.615 0.00 0.00 0.00 2.57
5525 12229 7.665690 AGCTAATGTAGAGGTCATGATTACAG 58.334 38.462 0.00 0.00 0.00 2.74
5539 12243 8.383619 GTCATGATTACAGACACACTTCAATAC 58.616 37.037 0.00 0.00 32.68 1.89
5564 12268 6.681729 TTTCTATGACTTGTACAGAGGGTT 57.318 37.500 0.00 0.00 0.00 4.11
5657 12361 8.224620 ACCATATTCCCTAGATTAAATGAGCT 57.775 34.615 0.00 0.00 0.00 4.09
5665 12369 9.435570 TCCCTAGATTAAATGAGCTTAGTTACT 57.564 33.333 0.00 0.00 0.00 2.24
5678 12382 9.534565 TGAGCTTAGTTACTATTGATGATGTTC 57.465 33.333 0.00 0.00 0.00 3.18
5679 12383 9.757227 GAGCTTAGTTACTATTGATGATGTTCT 57.243 33.333 0.00 0.00 0.00 3.01
5680 12384 9.757227 AGCTTAGTTACTATTGATGATGTTCTC 57.243 33.333 0.00 0.00 0.00 2.87
5714 12418 7.898014 AAAAACCCTAGATTAAATAGGCCTG 57.102 36.000 17.99 0.00 38.83 4.85
5715 12419 6.592207 AAACCCTAGATTAAATAGGCCTGT 57.408 37.500 17.99 5.57 38.83 4.00
5716 12420 5.827326 ACCCTAGATTAAATAGGCCTGTC 57.173 43.478 17.99 3.81 38.83 3.51
5717 12421 5.477913 ACCCTAGATTAAATAGGCCTGTCT 58.522 41.667 17.99 11.11 38.83 3.41
5718 12422 5.308237 ACCCTAGATTAAATAGGCCTGTCTG 59.692 44.000 17.99 4.60 38.83 3.51
5719 12423 5.280215 CCCTAGATTAAATAGGCCTGTCTGG 60.280 48.000 17.99 10.37 38.83 3.86
5720 12424 5.544176 CCTAGATTAAATAGGCCTGTCTGGA 59.456 44.000 17.99 0.00 33.76 3.86
5726 12430 3.775654 GGCCTGTCTGGACCCTCG 61.776 72.222 0.00 0.00 38.13 4.63
5727 12431 2.997897 GCCTGTCTGGACCCTCGT 60.998 66.667 0.00 0.00 38.35 4.18
5728 12432 2.584391 GCCTGTCTGGACCCTCGTT 61.584 63.158 0.00 0.00 38.35 3.85
5731 12435 0.898320 CTGTCTGGACCCTCGTTGAT 59.102 55.000 0.00 0.00 0.00 2.57
5743 12447 5.950023 ACCCTCGTTGATAAGATAGGAGTA 58.050 41.667 0.00 0.00 0.00 2.59
5755 12459 9.756571 GATAAGATAGGAGTACCCTTATGAAGA 57.243 37.037 8.03 0.00 44.85 2.87
5758 12462 7.770662 AGATAGGAGTACCCTTATGAAGATCA 58.229 38.462 8.03 0.00 44.85 2.92
5759 12463 7.893302 AGATAGGAGTACCCTTATGAAGATCAG 59.107 40.741 8.03 0.00 44.85 2.90
5760 12464 5.782925 AGGAGTACCCTTATGAAGATCAGT 58.217 41.667 0.00 0.00 44.85 3.41
5761 12465 6.923670 AGGAGTACCCTTATGAAGATCAGTA 58.076 40.000 0.00 0.00 44.85 2.74
5762 12466 7.540183 AGGAGTACCCTTATGAAGATCAGTAT 58.460 38.462 0.00 0.00 44.85 2.12
5763 12467 8.679725 AGGAGTACCCTTATGAAGATCAGTATA 58.320 37.037 0.00 0.00 44.85 1.47
5764 12468 8.962679 GGAGTACCCTTATGAAGATCAGTATAG 58.037 40.741 0.00 0.00 0.00 1.31
5765 12469 9.742144 GAGTACCCTTATGAAGATCAGTATAGA 57.258 37.037 0.00 0.00 0.00 1.98
5769 12473 9.836179 ACCCTTATGAAGATCAGTATAGAATCT 57.164 33.333 0.00 0.00 0.00 2.40
5775 12479 9.599056 ATGAAGATCAGTATAGAATCTCTTCCA 57.401 33.333 0.00 0.00 37.43 3.53
5776 12480 9.599056 TGAAGATCAGTATAGAATCTCTTCCAT 57.401 33.333 0.00 0.00 37.43 3.41
5779 12483 9.599056 AGATCAGTATAGAATCTCTTCCATTCA 57.401 33.333 0.00 0.00 33.34 2.57
5781 12485 9.995003 ATCAGTATAGAATCTCTTCCATTCAAC 57.005 33.333 0.00 0.00 33.34 3.18
5782 12486 8.981659 TCAGTATAGAATCTCTTCCATTCAACA 58.018 33.333 0.00 0.00 33.34 3.33
5783 12487 9.605275 CAGTATAGAATCTCTTCCATTCAACAA 57.395 33.333 0.00 0.00 33.34 2.83
5784 12488 9.829507 AGTATAGAATCTCTTCCATTCAACAAG 57.170 33.333 0.00 0.00 33.34 3.16
5785 12489 5.893897 AGAATCTCTTCCATTCAACAAGC 57.106 39.130 0.00 0.00 33.34 4.01
5786 12490 5.319453 AGAATCTCTTCCATTCAACAAGCA 58.681 37.500 0.00 0.00 33.34 3.91
5787 12491 5.771666 AGAATCTCTTCCATTCAACAAGCAA 59.228 36.000 0.00 0.00 33.34 3.91
5788 12492 6.266103 AGAATCTCTTCCATTCAACAAGCAAA 59.734 34.615 0.00 0.00 33.34 3.68
5789 12493 5.443185 TCTCTTCCATTCAACAAGCAAAG 57.557 39.130 0.00 0.00 0.00 2.77
5790 12494 4.279169 TCTCTTCCATTCAACAAGCAAAGG 59.721 41.667 0.00 0.00 0.00 3.11
5791 12495 2.818130 TCCATTCAACAAGCAAAGGC 57.182 45.000 0.00 0.00 41.61 4.35
5792 12496 2.037901 TCCATTCAACAAGCAAAGGCA 58.962 42.857 0.00 0.00 44.61 4.75
5793 12497 2.633967 TCCATTCAACAAGCAAAGGCAT 59.366 40.909 0.00 0.00 44.61 4.40
5794 12498 2.739913 CCATTCAACAAGCAAAGGCATG 59.260 45.455 0.00 0.00 44.02 4.06
5795 12499 1.868469 TTCAACAAGCAAAGGCATGC 58.132 45.000 9.90 9.90 42.27 4.06
5802 12506 3.900446 GCAAAGGCATGCTCTGTTT 57.100 47.368 18.92 9.53 43.06 2.83
5803 12507 2.159327 GCAAAGGCATGCTCTGTTTT 57.841 45.000 18.92 8.04 43.06 2.43
5804 12508 1.796459 GCAAAGGCATGCTCTGTTTTG 59.204 47.619 18.92 18.69 43.06 2.44
5805 12509 1.796459 CAAAGGCATGCTCTGTTTTGC 59.204 47.619 18.92 0.00 30.45 3.68
5806 12510 0.038892 AAGGCATGCTCTGTTTTGCG 60.039 50.000 18.92 0.00 35.95 4.85
5807 12511 0.890542 AGGCATGCTCTGTTTTGCGA 60.891 50.000 18.92 0.00 35.95 5.10
5808 12512 0.039256 GGCATGCTCTGTTTTGCGAA 60.039 50.000 18.92 0.00 35.95 4.70
5809 12513 1.602668 GGCATGCTCTGTTTTGCGAAA 60.603 47.619 18.92 0.00 35.95 3.46
5810 12514 2.126467 GCATGCTCTGTTTTGCGAAAA 58.874 42.857 11.37 0.00 0.00 2.29
5811 12515 2.154389 GCATGCTCTGTTTTGCGAAAAG 59.846 45.455 11.37 1.95 0.00 2.27
5826 12530 4.333633 CGAAAAGCAAGAACAGAGGATC 57.666 45.455 0.00 0.00 0.00 3.36
5827 12531 3.126000 CGAAAAGCAAGAACAGAGGATCC 59.874 47.826 2.48 2.48 33.66 3.36
5828 12532 3.795688 AAAGCAAGAACAGAGGATCCA 57.204 42.857 15.82 0.00 33.66 3.41
5829 12533 2.777832 AGCAAGAACAGAGGATCCAC 57.222 50.000 15.82 8.01 33.66 4.02
5830 12534 2.264455 AGCAAGAACAGAGGATCCACT 58.736 47.619 15.82 10.73 33.66 4.00
5831 12535 2.027377 AGCAAGAACAGAGGATCCACTG 60.027 50.000 30.75 30.75 39.84 3.66
5832 12536 2.289945 GCAAGAACAGAGGATCCACTGT 60.290 50.000 31.98 31.98 46.73 3.55
5833 12537 3.055819 GCAAGAACAGAGGATCCACTGTA 60.056 47.826 35.65 0.00 44.68 2.74
5834 12538 4.499183 CAAGAACAGAGGATCCACTGTAC 58.501 47.826 35.65 17.72 44.68 2.90
5835 12539 3.100671 AGAACAGAGGATCCACTGTACC 58.899 50.000 35.65 29.30 44.68 3.34
5836 12540 2.930109 ACAGAGGATCCACTGTACCT 57.070 50.000 34.98 16.62 43.89 3.08
5837 12541 3.191888 ACAGAGGATCCACTGTACCTT 57.808 47.619 34.98 16.29 43.89 3.50
5838 12542 2.834549 ACAGAGGATCCACTGTACCTTG 59.165 50.000 34.98 15.08 43.89 3.61
5839 12543 2.834549 CAGAGGATCCACTGTACCTTGT 59.165 50.000 26.12 0.00 33.66 3.16
5840 12544 2.834549 AGAGGATCCACTGTACCTTGTG 59.165 50.000 15.82 0.00 33.66 3.33
5841 12545 1.279271 AGGATCCACTGTACCTTGTGC 59.721 52.381 15.82 0.00 33.26 4.57
5842 12546 1.279271 GGATCCACTGTACCTTGTGCT 59.721 52.381 6.95 0.00 33.26 4.40
5843 12547 2.350522 GATCCACTGTACCTTGTGCTG 58.649 52.381 5.55 0.00 33.26 4.41
5844 12548 1.419381 TCCACTGTACCTTGTGCTGA 58.581 50.000 5.55 0.00 33.26 4.26
5845 12549 1.070134 TCCACTGTACCTTGTGCTGAC 59.930 52.381 5.55 0.00 33.26 3.51
5846 12550 1.202639 CCACTGTACCTTGTGCTGACA 60.203 52.381 5.55 0.00 33.26 3.58
5859 12563 4.552166 GTGCTGACACTTACAAACACAT 57.448 40.909 0.00 0.00 43.85 3.21
5860 12564 4.282068 GTGCTGACACTTACAAACACATG 58.718 43.478 0.00 0.00 43.85 3.21
5861 12565 4.035091 GTGCTGACACTTACAAACACATGA 59.965 41.667 0.00 0.00 43.85 3.07
5862 12566 4.637977 TGCTGACACTTACAAACACATGAA 59.362 37.500 0.00 0.00 0.00 2.57
5863 12567 5.124617 TGCTGACACTTACAAACACATGAAA 59.875 36.000 0.00 0.00 0.00 2.69
5864 12568 6.033341 GCTGACACTTACAAACACATGAAAA 58.967 36.000 0.00 0.00 0.00 2.29
5865 12569 6.529829 GCTGACACTTACAAACACATGAAAAA 59.470 34.615 0.00 0.00 0.00 1.94
5866 12570 7.222611 GCTGACACTTACAAACACATGAAAAAT 59.777 33.333 0.00 0.00 0.00 1.82
5867 12571 9.729023 CTGACACTTACAAACACATGAAAAATA 57.271 29.630 0.00 0.00 0.00 1.40
5868 12572 9.729023 TGACACTTACAAACACATGAAAAATAG 57.271 29.630 0.00 0.00 0.00 1.73
5869 12573 8.574196 ACACTTACAAACACATGAAAAATAGC 57.426 30.769 0.00 0.00 0.00 2.97
5870 12574 8.194104 ACACTTACAAACACATGAAAAATAGCA 58.806 29.630 0.00 0.00 0.00 3.49
5871 12575 8.479280 CACTTACAAACACATGAAAAATAGCAC 58.521 33.333 0.00 0.00 0.00 4.40
5872 12576 7.651704 ACTTACAAACACATGAAAAATAGCACC 59.348 33.333 0.00 0.00 0.00 5.01
5873 12577 5.296748 ACAAACACATGAAAAATAGCACCC 58.703 37.500 0.00 0.00 0.00 4.61
5874 12578 5.163364 ACAAACACATGAAAAATAGCACCCA 60.163 36.000 0.00 0.00 0.00 4.51
5875 12579 5.743636 AACACATGAAAAATAGCACCCAT 57.256 34.783 0.00 0.00 0.00 4.00
5876 12580 5.743636 ACACATGAAAAATAGCACCCATT 57.256 34.783 0.00 0.00 0.00 3.16
5877 12581 5.723295 ACACATGAAAAATAGCACCCATTC 58.277 37.500 0.00 0.00 0.00 2.67
5878 12582 5.481473 ACACATGAAAAATAGCACCCATTCT 59.519 36.000 0.00 0.00 0.00 2.40
5879 12583 6.663093 ACACATGAAAAATAGCACCCATTCTA 59.337 34.615 0.00 0.00 0.00 2.10
5880 12584 6.974622 CACATGAAAAATAGCACCCATTCTAC 59.025 38.462 0.00 0.00 0.00 2.59
5881 12585 6.891908 ACATGAAAAATAGCACCCATTCTACT 59.108 34.615 0.00 0.00 0.00 2.57
5882 12586 7.397192 ACATGAAAAATAGCACCCATTCTACTT 59.603 33.333 0.00 0.00 0.00 2.24
5883 12587 8.902806 CATGAAAAATAGCACCCATTCTACTTA 58.097 33.333 0.00 0.00 0.00 2.24
5884 12588 8.871629 TGAAAAATAGCACCCATTCTACTTAA 57.128 30.769 0.00 0.00 0.00 1.85
5885 12589 9.474313 TGAAAAATAGCACCCATTCTACTTAAT 57.526 29.630 0.00 0.00 0.00 1.40
5886 12590 9.736023 GAAAAATAGCACCCATTCTACTTAATG 57.264 33.333 0.00 0.00 36.74 1.90
5887 12591 9.474313 AAAAATAGCACCCATTCTACTTAATGA 57.526 29.630 0.00 0.00 38.84 2.57
5888 12592 8.682936 AAATAGCACCCATTCTACTTAATGAG 57.317 34.615 0.00 0.00 38.84 2.90
5889 12593 5.957771 AGCACCCATTCTACTTAATGAGA 57.042 39.130 0.00 0.00 38.84 3.27
5890 12594 5.923204 AGCACCCATTCTACTTAATGAGAG 58.077 41.667 0.00 0.00 38.84 3.20
5891 12595 4.513318 GCACCCATTCTACTTAATGAGAGC 59.487 45.833 0.00 0.00 38.84 4.09
5892 12596 5.686124 GCACCCATTCTACTTAATGAGAGCT 60.686 44.000 0.00 0.00 38.84 4.09
5893 12597 6.352516 CACCCATTCTACTTAATGAGAGCTT 58.647 40.000 0.00 0.00 38.84 3.74
5894 12598 6.481644 CACCCATTCTACTTAATGAGAGCTTC 59.518 42.308 0.00 0.00 38.84 3.86
5895 12599 5.994668 CCCATTCTACTTAATGAGAGCTTCC 59.005 44.000 0.00 0.00 38.84 3.46
5896 12600 5.994668 CCATTCTACTTAATGAGAGCTTCCC 59.005 44.000 0.00 0.00 38.84 3.97
5897 12601 6.408548 CCATTCTACTTAATGAGAGCTTCCCA 60.409 42.308 0.00 0.00 38.84 4.37
5898 12602 6.814954 TTCTACTTAATGAGAGCTTCCCAT 57.185 37.500 0.00 0.00 0.00 4.00
5899 12603 6.166984 TCTACTTAATGAGAGCTTCCCATG 57.833 41.667 0.00 0.00 0.00 3.66
5900 12604 5.899547 TCTACTTAATGAGAGCTTCCCATGA 59.100 40.000 0.00 0.00 0.00 3.07
5901 12605 5.441718 ACTTAATGAGAGCTTCCCATGAA 57.558 39.130 0.00 0.00 0.00 2.57
5920 12624 9.790344 CCCATGAAGATCAGTATAGAATTTCTT 57.210 33.333 3.86 0.00 0.00 2.52
5930 12634 9.958180 TCAGTATAGAATTTCTTCCATTCAACA 57.042 29.630 3.86 0.00 33.67 3.33
5934 12638 6.409524 AGAATTTCTTCCATTCAACAAGCA 57.590 33.333 0.00 0.00 33.67 3.91
5937 12670 7.440255 AGAATTTCTTCCATTCAACAAGCAAAG 59.560 33.333 0.00 0.00 33.67 2.77
5941 12674 2.633967 TCCATTCAACAAGCAAAGGCAT 59.366 40.909 0.00 0.00 44.61 4.40
5959 12692 2.154389 GCATGCTCTGTTTTGCGAAAAG 59.846 45.455 11.37 1.95 0.00 2.27
6025 12758 5.723295 ACACATGAAAAATAGCACCCATTC 58.277 37.500 0.00 0.00 0.00 2.67
6033 12766 9.474313 TGAAAAATAGCACCCATTCTACTTAAT 57.526 29.630 0.00 0.00 0.00 1.40
6041 12774 6.352516 CACCCATTCTACTTAATGAGAGCTT 58.647 40.000 0.00 0.00 38.84 3.74
6076 12809 4.918810 AAGGTCATATTTTCGCATTCCC 57.081 40.909 0.00 0.00 0.00 3.97
6160 12893 1.134280 CGATCATCTTGCCCTGGTTCT 60.134 52.381 0.00 0.00 0.00 3.01
6167 12900 1.627834 CTTGCCCTGGTTCTCTTCTCT 59.372 52.381 0.00 0.00 0.00 3.10
6169 12902 1.270907 GCCCTGGTTCTCTTCTCTCA 58.729 55.000 0.00 0.00 0.00 3.27
6188 12921 0.829333 ATCGCAATCTGCCAGAGACT 59.171 50.000 0.00 0.00 41.12 3.24
6201 12934 3.615110 GCCAGAGACTCACGAAATCAGAA 60.615 47.826 5.02 0.00 0.00 3.02
6204 12937 4.620609 CAGAGACTCACGAAATCAGAACTG 59.379 45.833 5.02 0.00 0.00 3.16
6254 12987 6.599356 TGTAACCTTCTAACATCAGCAGTA 57.401 37.500 0.00 0.00 0.00 2.74
6280 13013 0.376152 CCTTGATGCAAGCAGCTACG 59.624 55.000 11.82 0.00 45.94 3.51
6322 13055 4.814041 AGCAGGCCCTCCTCCCTC 62.814 72.222 0.00 0.00 41.93 4.30
6334 13067 1.456705 CTCCCTCGCTAGCCTCCTT 60.457 63.158 9.66 0.00 0.00 3.36
6342 13075 1.826024 CTAGCCTCCTTGCCATCGT 59.174 57.895 0.00 0.00 0.00 3.73
6355 13088 1.406065 CCATCGTCATGGCCTCCTCT 61.406 60.000 3.32 0.00 43.55 3.69
6367 13100 1.214062 CTCCTCTGTGCTCACCGTC 59.786 63.158 0.00 0.00 0.00 4.79
6370 13103 1.730902 CTCTGTGCTCACCGTCACG 60.731 63.158 0.00 0.00 36.06 4.35
6403 13136 4.863984 GACGTGTCGAGAACCTCC 57.136 61.111 0.00 0.00 0.00 4.30
6412 13145 1.747355 TCGAGAACCTCCGGTATGAAC 59.253 52.381 0.00 0.00 33.12 3.18
6415 13148 0.179702 GAACCTCCGGTATGAACCCC 59.820 60.000 0.00 0.00 43.54 4.95
6421 13154 4.199672 GGTATGAACCCCGGCCCC 62.200 72.222 0.00 0.00 40.21 5.80
6445 13178 1.614317 CCCTGAATCTTGTGTGACCCC 60.614 57.143 0.00 0.00 0.00 4.95
6451 13184 1.147376 CTTGTGTGACCCCGGTGAA 59.853 57.895 0.00 0.00 0.00 3.18
6482 13215 5.186996 ACACAGGATCAAACAACAATGTC 57.813 39.130 0.00 0.00 39.40 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 167 1.557269 ATGAGTCACTGTCCAGCCCC 61.557 60.000 0.00 0.00 0.00 5.80
233 240 6.664515 TCAAATCACCGTAGCAAACTTAAAG 58.335 36.000 0.00 0.00 0.00 1.85
319 373 5.546499 TCATCGGCCCCTAAATATTAAGTCT 59.454 40.000 0.00 0.00 0.00 3.24
322 376 6.049955 TCTCATCGGCCCCTAAATATTAAG 57.950 41.667 0.00 0.00 0.00 1.85
325 379 4.848357 CATCTCATCGGCCCCTAAATATT 58.152 43.478 0.00 0.00 0.00 1.28
333 387 4.996434 CCGCATCTCATCGGCCCC 62.996 72.222 0.00 0.00 39.14 5.80
357 432 0.948141 GAGTCTGCTCTTTGCGCTGT 60.948 55.000 9.73 0.00 46.63 4.40
375 450 0.609151 TTATGGGTCGACTTTGCGGA 59.391 50.000 16.46 0.00 0.00 5.54
442 523 1.216977 CGGACGGCCACAGATACAA 59.783 57.895 8.76 0.00 0.00 2.41
445 526 4.201679 CGCGGACGGCCACAGATA 62.202 66.667 8.76 0.00 38.94 1.98
478 559 2.937026 TTGCAGTTCACGCAAAACG 58.063 47.368 6.70 0.00 45.91 3.60
546 627 1.064166 CCCAAGAGGATGCATGGAAGT 60.064 52.381 2.46 0.00 38.24 3.01
621 702 0.035534 ACTGTGTGTGTGTTGCCTCA 60.036 50.000 0.00 0.00 0.00 3.86
635 716 2.413765 CGGAGGAACGTACAGTACTGTG 60.414 54.545 33.77 22.18 44.63 3.66
636 717 1.808945 CGGAGGAACGTACAGTACTGT 59.191 52.381 30.13 30.13 46.87 3.55
637 718 1.467035 GCGGAGGAACGTACAGTACTG 60.467 57.143 21.44 21.44 35.98 2.74
638 719 0.807496 GCGGAGGAACGTACAGTACT 59.193 55.000 9.10 0.00 35.98 2.73
639 720 0.179153 GGCGGAGGAACGTACAGTAC 60.179 60.000 0.00 0.00 35.98 2.73
640 721 1.647545 CGGCGGAGGAACGTACAGTA 61.648 60.000 0.00 0.00 35.98 2.74
641 722 2.968206 GGCGGAGGAACGTACAGT 59.032 61.111 0.00 0.00 35.98 3.55
643 724 2.985282 ACGGCGGAGGAACGTACA 60.985 61.111 13.24 0.00 39.30 2.90
813 901 3.710677 AGAGGAATGTTCAGAGAGGATGG 59.289 47.826 0.00 0.00 0.00 3.51
838 927 3.421844 GGGCAACAAACACTCTCCTAAT 58.578 45.455 0.00 0.00 39.74 1.73
983 1100 1.666888 GCATGTGTGTTGCTTACAGGC 60.667 52.381 0.00 0.00 43.38 4.85
1065 1190 2.705821 CCTCTTCTCCGTGAGCGCT 61.706 63.158 11.27 11.27 36.67 5.92
1070 1195 0.614697 TGCCATCCTCTTCTCCGTGA 60.615 55.000 0.00 0.00 0.00 4.35
1072 1197 0.467384 CATGCCATCCTCTTCTCCGT 59.533 55.000 0.00 0.00 0.00 4.69
1073 1198 0.883814 GCATGCCATCCTCTTCTCCG 60.884 60.000 6.36 0.00 0.00 4.63
1075 1200 1.948145 CTTGCATGCCATCCTCTTCTC 59.052 52.381 16.68 0.00 0.00 2.87
1076 1201 2.022754 GCTTGCATGCCATCCTCTTCT 61.023 52.381 16.68 0.00 0.00 2.85
1147 1272 2.082366 CGTTGCATTCCTGTTGCGC 61.082 57.895 0.00 0.00 43.10 6.09
1188 1313 2.301583 GCTCCCTCTGGTCAGATTATCC 59.698 54.545 0.75 0.00 36.76 2.59
1239 1364 1.075525 TACCTGGTAGGCGGATGCT 60.076 57.895 1.49 0.00 39.63 3.79
1242 1367 2.314246 GTTACTACCTGGTAGGCGGAT 58.686 52.381 31.52 16.53 39.63 4.18
1311 1436 9.798994 ATTTAGAATCAAGATCAATGCAAGAAC 57.201 29.630 0.00 0.00 0.00 3.01
1355 1480 9.243105 ACACACTAGCCAATTAAGTGAAAATAT 57.757 29.630 4.10 0.00 42.59 1.28
1360 1485 5.472137 GGAACACACTAGCCAATTAAGTGAA 59.528 40.000 4.10 0.00 42.59 3.18
1362 1487 5.003804 AGGAACACACTAGCCAATTAAGTG 58.996 41.667 0.00 0.00 44.89 3.16
1384 1509 5.049818 GGAAGCTCCATCGATTATGTGAAAG 60.050 44.000 0.00 0.00 36.28 2.62
1405 1530 1.257743 CCACAGAGAAGACGAGGGAA 58.742 55.000 0.00 0.00 0.00 3.97
1428 1553 8.694975 AGATCAATCGATTTATAACAGATCCG 57.305 34.615 20.26 3.77 32.04 4.18
1448 1573 7.303182 ACCATATTACAATCGGAGAAGATCA 57.697 36.000 0.00 0.00 43.58 2.92
1496 1621 3.013921 TGCACCAAAATAGGAACGGATC 58.986 45.455 0.00 0.00 0.00 3.36
1499 1624 4.578516 TCATATGCACCAAAATAGGAACGG 59.421 41.667 0.00 0.00 0.00 4.44
1661 1790 9.515020 TTTTGTTTGTTGAGAAGTCATAATGTC 57.485 29.630 0.00 0.00 30.85 3.06
1666 1795 8.567948 GGAGATTTTGTTTGTTGAGAAGTCATA 58.432 33.333 0.00 0.00 30.85 2.15
1760 1889 1.123928 AGAAGTTATCCAGCCTCGGG 58.876 55.000 0.00 0.00 0.00 5.14
1818 1947 4.279169 AGTGCTAACAATCATGTGTTGCTT 59.721 37.500 10.99 8.38 41.75 3.91
1894 2023 5.707764 TGTTTATGCATTGCCTACAACACTA 59.292 36.000 3.54 0.00 38.99 2.74
1939 2068 8.308931 TGTTTCTAGTCCATGTCGTTAATTAGT 58.691 33.333 0.00 0.00 0.00 2.24
2048 2179 4.379652 GTTCCTGCAAAACATTTGGTCAT 58.620 39.130 6.73 0.00 0.00 3.06
2098 2232 6.837471 TGGGTACGTTTGGCTAATTATTTT 57.163 33.333 0.00 0.00 0.00 1.82
2099 2233 6.603997 TGATGGGTACGTTTGGCTAATTATTT 59.396 34.615 0.00 0.00 0.00 1.40
2123 2257 6.905076 GTGCACCACGTCAATTATACTATTTG 59.095 38.462 5.22 0.00 0.00 2.32
2174 2413 4.142038 GTGGCTTCCAACCTTTTCTTCTA 58.858 43.478 0.00 0.00 34.18 2.10
2202 2441 3.665675 ATCAAGTCGCACTCGGGGC 62.666 63.158 0.00 0.00 36.13 5.80
2266 2505 5.470098 GTCAGCTTCTTCCAGTTTGTTCATA 59.530 40.000 0.00 0.00 0.00 2.15
2449 2690 3.181472 TGCAATGCACACAACCATGTTTA 60.181 39.130 2.72 0.00 32.95 2.01
2458 2699 3.256136 TCTTCATCATGCAATGCACACAA 59.744 39.130 11.23 0.00 46.21 3.33
2468 2709 1.153107 CCGGCCTCTTCATCATGCA 60.153 57.895 0.00 0.00 0.00 3.96
2496 2737 8.092068 TGTTATGTTATTTCTTCTTCGACTGGA 58.908 33.333 0.00 0.00 0.00 3.86
2498 2739 8.708742 TGTGTTATGTTATTTCTTCTTCGACTG 58.291 33.333 0.00 0.00 0.00 3.51
2500 2741 8.709646 AGTGTGTTATGTTATTTCTTCTTCGAC 58.290 33.333 0.00 0.00 0.00 4.20
2626 3210 3.431346 GGTCCCCACCTTTTCGACTATAC 60.431 52.174 0.00 0.00 40.00 1.47
2628 3212 1.558294 GGTCCCCACCTTTTCGACTAT 59.442 52.381 0.00 0.00 40.00 2.12
2629 3213 0.978907 GGTCCCCACCTTTTCGACTA 59.021 55.000 0.00 0.00 40.00 2.59
2631 3215 4.391869 GGTCCCCACCTTTTCGAC 57.608 61.111 0.00 0.00 40.00 4.20
2806 3419 0.679640 TTCCATCCACATTGACGGCC 60.680 55.000 0.00 0.00 0.00 6.13
2830 3443 4.743493 CGAATTTGTCCCAAATTGTAGGG 58.257 43.478 17.05 4.83 46.90 3.53
3145 3886 6.261381 GGGCCATGAGTATATTTTACAACGAA 59.739 38.462 4.39 0.00 0.00 3.85
3146 3887 5.761234 GGGCCATGAGTATATTTTACAACGA 59.239 40.000 4.39 0.00 0.00 3.85
3362 5449 8.319146 ACACACAAGGCTATTACTATTAGTGTT 58.681 33.333 6.60 0.00 34.62 3.32
3436 5523 4.133820 CAATGACCTTGTTGTAGTGGACA 58.866 43.478 0.00 0.00 35.78 4.02
3438 5525 4.698201 TCAATGACCTTGTTGTAGTGGA 57.302 40.909 0.00 0.00 36.20 4.02
3605 6242 3.039011 AGGGTAACATACGGCTCAATCT 58.961 45.455 0.00 0.00 39.74 2.40
3741 6378 1.533625 TGTTAGACCACCATTGCAGC 58.466 50.000 0.00 0.00 0.00 5.25
3767 6404 2.096819 GCTGCATTGGAAATTTGCATGG 59.903 45.455 13.51 9.57 40.61 3.66
3778 6415 1.438651 GTAGTCGTTGCTGCATTGGA 58.561 50.000 1.84 0.00 0.00 3.53
3848 6485 1.363744 GCTCGTTGAAGGTGATCCAG 58.636 55.000 0.00 0.00 35.89 3.86
4028 10271 2.494870 GCCGACCTTGTACTTCTTCCTA 59.505 50.000 0.00 0.00 0.00 2.94
4049 10292 2.102578 GGGAAATCACATCAAGGGTGG 58.897 52.381 0.00 0.00 36.90 4.61
4216 10523 1.003839 TCTTCGCGGCCTCAACATT 60.004 52.632 6.13 0.00 0.00 2.71
4230 10537 3.324993 CTGGAACTCTTGTGCTCTCTTC 58.675 50.000 0.00 0.00 0.00 2.87
4275 10584 9.989869 GAGTGGAAAATAGTTAATGAAGTTAGC 57.010 33.333 0.00 0.00 0.00 3.09
4282 10591 7.123697 TCGGAGAGAGTGGAAAATAGTTAATGA 59.876 37.037 0.00 0.00 0.00 2.57
4297 10606 5.521735 CACTTTTTATGGATCGGAGAGAGTG 59.478 44.000 0.00 0.00 43.63 3.51
4302 10611 4.430007 CGACACTTTTTATGGATCGGAGA 58.570 43.478 0.00 0.00 45.75 3.71
4319 10628 4.531659 ACTTAGTTCAAAAGTGCGACAC 57.468 40.909 2.28 2.28 35.87 3.67
4320 10629 5.353938 AGTACTTAGTTCAAAAGTGCGACA 58.646 37.500 0.00 0.00 42.32 4.35
4322 10631 8.597662 AATTAGTACTTAGTTCAAAAGTGCGA 57.402 30.769 0.00 0.00 42.32 5.10
4387 10982 0.107654 AATCGCCGAAGAAGAAGGGG 60.108 55.000 0.00 0.00 39.06 4.79
4402 10997 0.528901 TCATTGTCGCCGGGTAATCG 60.529 55.000 2.18 0.00 0.00 3.34
4432 11027 2.665000 CTCGGCAGCCTTTCTCCA 59.335 61.111 10.54 0.00 0.00 3.86
4459 11054 0.329261 TCACCAGATGGGCCTCTTTG 59.671 55.000 4.53 5.27 42.05 2.77
4469 11064 1.450312 GCGACCCCTTCACCAGATG 60.450 63.158 0.00 0.00 0.00 2.90
4528 11123 3.907474 TGACAGTGGAATGGTCTTCCTTA 59.093 43.478 5.66 0.00 39.31 2.69
4643 11240 7.781056 TGCACACATGAGTATGAAGTTAGATA 58.219 34.615 0.00 0.00 37.73 1.98
4704 11348 5.827797 TGATGGTTACCTTATCTCCAATTGC 59.172 40.000 2.07 0.00 0.00 3.56
4733 11377 3.308438 AATTTCAGTCTGCATGTTGCC 57.692 42.857 0.00 0.00 44.23 4.52
4750 11394 9.286946 CAAATGCAACATTACAACACAAAAATT 57.713 25.926 0.00 0.00 0.00 1.82
4752 11396 8.032952 TCAAATGCAACATTACAACACAAAAA 57.967 26.923 0.00 0.00 0.00 1.94
4782 11429 8.243426 GTCATGATGCCTACAGTTAATTTTCAA 58.757 33.333 0.00 0.00 0.00 2.69
4796 11443 7.971201 AGAGAAATATTCAGTCATGATGCCTA 58.029 34.615 0.00 0.00 34.73 3.93
4817 11502 0.524862 GTACGGAGGCGAACAAGAGA 59.475 55.000 0.00 0.00 0.00 3.10
4833 11518 0.878416 TTGAATTGGCCTGCACGTAC 59.122 50.000 3.32 0.00 0.00 3.67
4851 11536 4.402155 CCAGGCACAATGTACAACCATATT 59.598 41.667 0.00 0.00 0.00 1.28
4887 11572 8.830201 ATCTATCTTTGACATAGTTCATGAGC 57.170 34.615 0.50 0.50 38.10 4.26
4967 11661 9.341078 AGTGTTTTGCTAATCAAATGGAAAAAT 57.659 25.926 0.00 0.00 43.53 1.82
4971 11665 7.048629 TCAGTGTTTTGCTAATCAAATGGAA 57.951 32.000 0.00 0.00 43.53 3.53
4987 11681 5.684704 TCTGTTCCATCTCTTTCAGTGTTT 58.315 37.500 0.00 0.00 0.00 2.83
5009 11704 5.607119 TCATAAAACTCTGAAGCGGTTTC 57.393 39.130 0.00 0.00 32.89 2.78
5013 11708 5.613358 AAGTTCATAAAACTCTGAAGCGG 57.387 39.130 0.00 0.00 32.33 5.52
5027 11722 8.978874 ATATGCACATCCTTGTTAAGTTCATA 57.021 30.769 0.00 0.00 32.34 2.15
5034 11729 7.936496 TTGAGAATATGCACATCCTTGTTAA 57.064 32.000 0.00 0.00 32.34 2.01
5051 11753 7.972277 GCACATCAATTACACTTGATTGAGAAT 59.028 33.333 5.22 0.00 41.89 2.40
5054 11756 6.032094 GGCACATCAATTACACTTGATTGAG 58.968 40.000 5.22 1.42 41.89 3.02
5096 11800 3.924114 TCCCTGAAACAACAGAGTTCA 57.076 42.857 0.00 0.00 39.94 3.18
5097 11801 3.503748 CCATCCCTGAAACAACAGAGTTC 59.496 47.826 0.00 0.00 39.94 3.01
5104 11808 3.420893 TGTCATCCATCCCTGAAACAAC 58.579 45.455 0.00 0.00 0.00 3.32
5167 11871 6.775142 TCATTGTGGTAGTTGATCCTTTTTGA 59.225 34.615 0.00 0.00 0.00 2.69
5232 11936 6.480320 CGACTGATCAAGGGAAGGTAAAATAG 59.520 42.308 0.00 0.00 0.00 1.73
5233 11937 6.155565 TCGACTGATCAAGGGAAGGTAAAATA 59.844 38.462 0.00 0.00 0.00 1.40
5260 11964 8.814038 ACCAATCTATGAATAGCAAAAGAAGT 57.186 30.769 0.00 0.00 0.00 3.01
5282 11986 6.909550 AATTGCAGTACCAAAGATTAACCA 57.090 33.333 0.00 0.00 0.00 3.67
5283 11987 9.301153 CATAAATTGCAGTACCAAAGATTAACC 57.699 33.333 0.00 0.00 0.00 2.85
5301 12005 1.949525 CCGTCCTCCCTGCATAAATTG 59.050 52.381 0.00 0.00 0.00 2.32
5307 12011 2.671070 CAACCGTCCTCCCTGCAT 59.329 61.111 0.00 0.00 0.00 3.96
5376 12080 2.073252 ATCTCGAGGTGTATCCAGCA 57.927 50.000 13.56 0.00 41.60 4.41
5391 12095 2.921754 CACGAAGTACAACCCGAATCTC 59.078 50.000 0.00 0.00 41.61 2.75
5412 12116 5.657302 TCTCTTGAGGTTATCCTTGTAGTCC 59.343 44.000 0.00 0.00 45.24 3.85
5472 12176 4.789012 TTTTGATCAGGAAGATGCCAAC 57.211 40.909 0.00 0.00 37.00 3.77
5525 12229 9.209175 AGTCATAGAAAAGTATTGAAGTGTGTC 57.791 33.333 0.00 0.00 0.00 3.67
5539 12243 6.702329 ACCCTCTGTACAAGTCATAGAAAAG 58.298 40.000 0.00 0.00 0.00 2.27
5556 12260 5.183713 TCACAAATTGCTATTGAACCCTCTG 59.816 40.000 0.00 0.00 0.00 3.35
5558 12262 5.183904 AGTCACAAATTGCTATTGAACCCTC 59.816 40.000 0.00 0.00 0.00 4.30
5564 12268 7.175467 ACATGAGAAGTCACAAATTGCTATTGA 59.825 33.333 0.00 0.00 34.75 2.57
5654 12358 9.757227 GAGAACATCATCAATAGTAACTAAGCT 57.243 33.333 0.00 0.00 0.00 3.74
5655 12359 9.757227 AGAGAACATCATCAATAGTAACTAAGC 57.243 33.333 0.00 0.00 0.00 3.09
5690 12394 7.419203 ACAGGCCTATTTAATCTAGGGTTTTT 58.581 34.615 3.98 0.00 36.94 1.94
5691 12395 6.981737 ACAGGCCTATTTAATCTAGGGTTTT 58.018 36.000 3.98 0.00 36.94 2.43
5693 12397 5.911766 AGACAGGCCTATTTAATCTAGGGTT 59.088 40.000 3.98 0.00 36.94 4.11
5695 12399 5.280215 CCAGACAGGCCTATTTAATCTAGGG 60.280 48.000 3.98 0.00 36.94 3.53
5696 12400 5.544176 TCCAGACAGGCCTATTTAATCTAGG 59.456 44.000 3.98 6.68 39.06 3.02
5697 12401 6.459923 GTCCAGACAGGCCTATTTAATCTAG 58.540 44.000 3.98 0.00 37.29 2.43
5698 12402 5.307196 GGTCCAGACAGGCCTATTTAATCTA 59.693 44.000 3.98 0.00 37.29 1.98
5699 12403 4.103311 GGTCCAGACAGGCCTATTTAATCT 59.897 45.833 3.98 0.00 37.29 2.40
5700 12404 4.390264 GGTCCAGACAGGCCTATTTAATC 58.610 47.826 3.98 0.00 37.29 1.75
5701 12405 3.138468 GGGTCCAGACAGGCCTATTTAAT 59.862 47.826 3.98 0.00 37.29 1.40
5702 12406 2.508300 GGGTCCAGACAGGCCTATTTAA 59.492 50.000 3.98 0.00 37.29 1.52
5703 12407 2.124411 GGGTCCAGACAGGCCTATTTA 58.876 52.381 3.98 0.00 37.29 1.40
5704 12408 0.919710 GGGTCCAGACAGGCCTATTT 59.080 55.000 3.98 0.00 37.29 1.40
5705 12409 0.044855 AGGGTCCAGACAGGCCTATT 59.955 55.000 3.98 0.00 37.29 1.73
5706 12410 0.399233 GAGGGTCCAGACAGGCCTAT 60.399 60.000 3.98 0.00 37.29 2.57
5707 12411 1.001760 GAGGGTCCAGACAGGCCTA 59.998 63.158 3.98 0.00 37.29 3.93
5708 12412 2.284995 GAGGGTCCAGACAGGCCT 60.285 66.667 0.00 0.00 37.29 5.19
5709 12413 3.775654 CGAGGGTCCAGACAGGCC 61.776 72.222 0.00 0.00 37.29 5.19
5710 12414 2.584391 AACGAGGGTCCAGACAGGC 61.584 63.158 0.00 0.00 37.29 4.85
5711 12415 1.185618 TCAACGAGGGTCCAGACAGG 61.186 60.000 0.00 0.00 39.47 4.00
5712 12416 0.898320 ATCAACGAGGGTCCAGACAG 59.102 55.000 0.00 0.00 0.00 3.51
5713 12417 2.225382 TATCAACGAGGGTCCAGACA 57.775 50.000 0.00 0.00 0.00 3.41
5714 12418 2.758979 TCTTATCAACGAGGGTCCAGAC 59.241 50.000 0.00 0.00 0.00 3.51
5715 12419 3.095912 TCTTATCAACGAGGGTCCAGA 57.904 47.619 0.00 0.00 0.00 3.86
5716 12420 4.021894 CCTATCTTATCAACGAGGGTCCAG 60.022 50.000 0.00 0.00 0.00 3.86
5717 12421 3.895656 CCTATCTTATCAACGAGGGTCCA 59.104 47.826 0.00 0.00 0.00 4.02
5718 12422 4.150359 TCCTATCTTATCAACGAGGGTCC 58.850 47.826 0.00 0.00 0.00 4.46
5719 12423 4.828387 ACTCCTATCTTATCAACGAGGGTC 59.172 45.833 0.00 0.00 0.00 4.46
5720 12424 4.805744 ACTCCTATCTTATCAACGAGGGT 58.194 43.478 0.00 0.00 0.00 4.34
5721 12425 5.183522 GGTACTCCTATCTTATCAACGAGGG 59.816 48.000 0.00 0.00 0.00 4.30
5722 12426 5.183522 GGGTACTCCTATCTTATCAACGAGG 59.816 48.000 0.00 0.00 0.00 4.63
5723 12427 6.005198 AGGGTACTCCTATCTTATCAACGAG 58.995 44.000 1.40 0.00 45.98 4.18
5724 12428 5.950023 AGGGTACTCCTATCTTATCAACGA 58.050 41.667 1.40 0.00 45.98 3.85
5743 12447 9.836179 AGATTCTATACTGATCTTCATAAGGGT 57.164 33.333 0.00 0.00 0.00 4.34
5755 12459 9.995003 GTTGAATGGAAGAGATTCTATACTGAT 57.005 33.333 0.00 0.00 32.04 2.90
5758 12462 9.829507 CTTGTTGAATGGAAGAGATTCTATACT 57.170 33.333 0.00 0.00 32.04 2.12
5759 12463 8.555361 GCTTGTTGAATGGAAGAGATTCTATAC 58.445 37.037 0.00 0.00 32.04 1.47
5760 12464 8.267183 TGCTTGTTGAATGGAAGAGATTCTATA 58.733 33.333 0.00 0.00 32.04 1.31
5761 12465 7.114754 TGCTTGTTGAATGGAAGAGATTCTAT 58.885 34.615 0.00 0.00 32.04 1.98
5762 12466 6.475504 TGCTTGTTGAATGGAAGAGATTCTA 58.524 36.000 0.00 0.00 32.04 2.10
5763 12467 5.319453 TGCTTGTTGAATGGAAGAGATTCT 58.681 37.500 0.00 0.00 32.04 2.40
5764 12468 5.633830 TGCTTGTTGAATGGAAGAGATTC 57.366 39.130 0.00 0.00 0.00 2.52
5765 12469 6.409524 TTTGCTTGTTGAATGGAAGAGATT 57.590 33.333 0.00 0.00 0.00 2.40
5766 12470 5.047519 CCTTTGCTTGTTGAATGGAAGAGAT 60.048 40.000 0.00 0.00 0.00 2.75
5767 12471 4.279169 CCTTTGCTTGTTGAATGGAAGAGA 59.721 41.667 0.00 0.00 0.00 3.10
5768 12472 4.553323 CCTTTGCTTGTTGAATGGAAGAG 58.447 43.478 0.00 0.00 0.00 2.85
5769 12473 3.243839 GCCTTTGCTTGTTGAATGGAAGA 60.244 43.478 0.00 0.00 33.53 2.87
5770 12474 3.062042 GCCTTTGCTTGTTGAATGGAAG 58.938 45.455 0.00 0.00 33.53 3.46
5771 12475 2.433604 TGCCTTTGCTTGTTGAATGGAA 59.566 40.909 0.00 0.00 38.71 3.53
5772 12476 2.037901 TGCCTTTGCTTGTTGAATGGA 58.962 42.857 0.00 0.00 38.71 3.41
5773 12477 2.529780 TGCCTTTGCTTGTTGAATGG 57.470 45.000 0.00 0.00 38.71 3.16
5774 12478 2.158841 GCATGCCTTTGCTTGTTGAATG 59.841 45.455 6.36 0.00 42.85 2.67
5775 12479 2.419667 GCATGCCTTTGCTTGTTGAAT 58.580 42.857 6.36 0.00 42.85 2.57
5776 12480 1.868469 GCATGCCTTTGCTTGTTGAA 58.132 45.000 6.36 0.00 42.85 2.69
5777 12481 3.591979 GCATGCCTTTGCTTGTTGA 57.408 47.368 6.36 0.00 42.85 3.18
5784 12488 1.796459 CAAAACAGAGCATGCCTTTGC 59.204 47.619 15.66 0.00 43.09 3.68
5785 12489 1.796459 GCAAAACAGAGCATGCCTTTG 59.204 47.619 15.66 16.12 37.76 2.77
5786 12490 1.603678 CGCAAAACAGAGCATGCCTTT 60.604 47.619 15.66 4.28 35.41 3.11
5787 12491 0.038892 CGCAAAACAGAGCATGCCTT 60.039 50.000 15.66 0.00 35.41 4.35
5788 12492 0.890542 TCGCAAAACAGAGCATGCCT 60.891 50.000 15.66 8.56 35.41 4.75
5789 12493 0.039256 TTCGCAAAACAGAGCATGCC 60.039 50.000 15.66 6.03 35.41 4.40
5790 12494 1.769733 TTTCGCAAAACAGAGCATGC 58.230 45.000 10.51 10.51 35.49 4.06
5791 12495 2.154389 GCTTTTCGCAAAACAGAGCATG 59.846 45.455 0.00 0.00 38.92 4.06
5792 12496 2.397549 GCTTTTCGCAAAACAGAGCAT 58.602 42.857 0.00 0.00 38.92 3.79
5793 12497 1.838913 GCTTTTCGCAAAACAGAGCA 58.161 45.000 0.00 0.00 38.92 4.26
5804 12508 1.873591 TCCTCTGTTCTTGCTTTTCGC 59.126 47.619 0.00 0.00 39.77 4.70
5805 12509 3.126000 GGATCCTCTGTTCTTGCTTTTCG 59.874 47.826 3.84 0.00 0.00 3.46
5806 12510 4.074970 TGGATCCTCTGTTCTTGCTTTTC 58.925 43.478 14.23 0.00 0.00 2.29
5807 12511 3.823304 GTGGATCCTCTGTTCTTGCTTTT 59.177 43.478 14.23 0.00 0.00 2.27
5808 12512 3.073650 AGTGGATCCTCTGTTCTTGCTTT 59.926 43.478 15.52 0.00 0.00 3.51
5809 12513 2.641815 AGTGGATCCTCTGTTCTTGCTT 59.358 45.455 15.52 0.00 0.00 3.91
5810 12514 2.027377 CAGTGGATCCTCTGTTCTTGCT 60.027 50.000 28.32 0.00 34.13 3.91
5811 12515 2.289945 ACAGTGGATCCTCTGTTCTTGC 60.290 50.000 33.76 5.35 44.99 4.01
5812 12516 3.692257 ACAGTGGATCCTCTGTTCTTG 57.308 47.619 33.76 17.15 44.99 3.02
5813 12517 3.515901 GGTACAGTGGATCCTCTGTTCTT 59.484 47.826 39.94 24.87 44.99 2.52
5814 12518 3.100671 GGTACAGTGGATCCTCTGTTCT 58.899 50.000 39.94 25.16 44.99 3.01
5815 12519 3.100671 AGGTACAGTGGATCCTCTGTTC 58.899 50.000 39.94 35.01 44.99 3.18
5816 12520 3.191888 AGGTACAGTGGATCCTCTGTT 57.808 47.619 39.94 26.51 44.99 3.16
5818 12522 2.834549 ACAAGGTACAGTGGATCCTCTG 59.165 50.000 32.61 32.61 41.62 3.35
5819 12523 2.834549 CACAAGGTACAGTGGATCCTCT 59.165 50.000 14.23 12.34 33.93 3.69
5820 12524 2.678190 GCACAAGGTACAGTGGATCCTC 60.678 54.545 14.23 9.81 37.17 3.71
5821 12525 1.279271 GCACAAGGTACAGTGGATCCT 59.721 52.381 14.23 0.00 37.17 3.24
5822 12526 1.279271 AGCACAAGGTACAGTGGATCC 59.721 52.381 4.20 4.20 37.17 3.36
5823 12527 2.028112 TCAGCACAAGGTACAGTGGATC 60.028 50.000 12.37 0.00 37.17 3.36
5824 12528 1.977854 TCAGCACAAGGTACAGTGGAT 59.022 47.619 12.37 0.00 37.17 3.41
5825 12529 1.070134 GTCAGCACAAGGTACAGTGGA 59.930 52.381 12.37 0.00 37.17 4.02
5826 12530 1.202639 TGTCAGCACAAGGTACAGTGG 60.203 52.381 12.37 0.49 37.17 4.00
5827 12531 1.867233 GTGTCAGCACAAGGTACAGTG 59.133 52.381 7.68 7.68 44.64 3.66
5828 12532 2.240493 GTGTCAGCACAAGGTACAGT 57.760 50.000 0.00 0.00 44.64 3.55
5838 12542 4.035091 TCATGTGTTTGTAAGTGTCAGCAC 59.965 41.667 0.00 0.00 45.57 4.40
5839 12543 4.195416 TCATGTGTTTGTAAGTGTCAGCA 58.805 39.130 0.00 0.00 0.00 4.41
5840 12544 4.811555 TCATGTGTTTGTAAGTGTCAGC 57.188 40.909 0.00 0.00 0.00 4.26
5841 12545 8.633075 ATTTTTCATGTGTTTGTAAGTGTCAG 57.367 30.769 0.00 0.00 0.00 3.51
5842 12546 9.729023 CTATTTTTCATGTGTTTGTAAGTGTCA 57.271 29.630 0.00 0.00 0.00 3.58
5843 12547 8.690840 GCTATTTTTCATGTGTTTGTAAGTGTC 58.309 33.333 0.00 0.00 0.00 3.67
5844 12548 8.194104 TGCTATTTTTCATGTGTTTGTAAGTGT 58.806 29.630 0.00 0.00 0.00 3.55
5845 12549 8.479280 GTGCTATTTTTCATGTGTTTGTAAGTG 58.521 33.333 0.00 0.00 0.00 3.16
5846 12550 7.651704 GGTGCTATTTTTCATGTGTTTGTAAGT 59.348 33.333 0.00 0.00 0.00 2.24
5847 12551 7.116233 GGGTGCTATTTTTCATGTGTTTGTAAG 59.884 37.037 0.00 0.00 0.00 2.34
5848 12552 6.926272 GGGTGCTATTTTTCATGTGTTTGTAA 59.074 34.615 0.00 0.00 0.00 2.41
5849 12553 6.040955 TGGGTGCTATTTTTCATGTGTTTGTA 59.959 34.615 0.00 0.00 0.00 2.41
5850 12554 5.163364 TGGGTGCTATTTTTCATGTGTTTGT 60.163 36.000 0.00 0.00 0.00 2.83
5851 12555 5.295950 TGGGTGCTATTTTTCATGTGTTTG 58.704 37.500 0.00 0.00 0.00 2.93
5852 12556 5.543507 TGGGTGCTATTTTTCATGTGTTT 57.456 34.783 0.00 0.00 0.00 2.83
5853 12557 5.743636 ATGGGTGCTATTTTTCATGTGTT 57.256 34.783 0.00 0.00 0.00 3.32
5854 12558 5.481473 AGAATGGGTGCTATTTTTCATGTGT 59.519 36.000 0.00 0.00 0.00 3.72
5855 12559 5.969423 AGAATGGGTGCTATTTTTCATGTG 58.031 37.500 0.00 0.00 0.00 3.21
5856 12560 6.891908 AGTAGAATGGGTGCTATTTTTCATGT 59.108 34.615 0.00 0.00 0.00 3.21
5857 12561 7.338800 AGTAGAATGGGTGCTATTTTTCATG 57.661 36.000 0.00 0.00 0.00 3.07
5858 12562 7.961326 AAGTAGAATGGGTGCTATTTTTCAT 57.039 32.000 0.00 0.00 0.00 2.57
5859 12563 8.871629 TTAAGTAGAATGGGTGCTATTTTTCA 57.128 30.769 0.00 0.00 0.00 2.69
5860 12564 9.736023 CATTAAGTAGAATGGGTGCTATTTTTC 57.264 33.333 0.00 0.00 33.86 2.29
5861 12565 9.474313 TCATTAAGTAGAATGGGTGCTATTTTT 57.526 29.630 0.00 0.00 37.41 1.94
5862 12566 9.125026 CTCATTAAGTAGAATGGGTGCTATTTT 57.875 33.333 0.00 0.00 37.41 1.82
5863 12567 8.494433 TCTCATTAAGTAGAATGGGTGCTATTT 58.506 33.333 0.00 0.00 38.29 1.40
5864 12568 8.034313 TCTCATTAAGTAGAATGGGTGCTATT 57.966 34.615 0.00 0.00 38.29 1.73
5865 12569 7.618019 TCTCATTAAGTAGAATGGGTGCTAT 57.382 36.000 0.00 0.00 38.29 2.97
5866 12570 6.463049 GCTCTCATTAAGTAGAATGGGTGCTA 60.463 42.308 13.19 0.00 46.26 3.49
5867 12571 5.686124 GCTCTCATTAAGTAGAATGGGTGCT 60.686 44.000 13.19 0.00 46.26 4.40
5868 12572 4.513318 GCTCTCATTAAGTAGAATGGGTGC 59.487 45.833 7.15 7.15 44.78 5.01
5869 12573 5.923204 AGCTCTCATTAAGTAGAATGGGTG 58.077 41.667 0.00 0.00 38.29 4.61
5870 12574 6.408662 GGAAGCTCTCATTAAGTAGAATGGGT 60.409 42.308 0.00 0.00 38.29 4.51
5871 12575 5.994668 GGAAGCTCTCATTAAGTAGAATGGG 59.005 44.000 0.00 0.00 38.46 4.00
5872 12576 5.994668 GGGAAGCTCTCATTAAGTAGAATGG 59.005 44.000 0.00 0.00 37.41 3.16
5873 12577 6.586344 TGGGAAGCTCTCATTAAGTAGAATG 58.414 40.000 0.00 0.00 38.03 2.67
5874 12578 6.814954 TGGGAAGCTCTCATTAAGTAGAAT 57.185 37.500 0.00 0.00 0.00 2.40
5875 12579 6.384015 TCATGGGAAGCTCTCATTAAGTAGAA 59.616 38.462 0.00 0.00 34.84 2.10
5876 12580 5.899547 TCATGGGAAGCTCTCATTAAGTAGA 59.100 40.000 0.00 0.00 34.84 2.59
5877 12581 6.166984 TCATGGGAAGCTCTCATTAAGTAG 57.833 41.667 0.00 0.00 34.84 2.57
5878 12582 6.560003 TTCATGGGAAGCTCTCATTAAGTA 57.440 37.500 0.00 0.00 34.84 2.24
5879 12583 5.435291 CTTCATGGGAAGCTCTCATTAAGT 58.565 41.667 9.82 0.00 43.67 2.24
5892 12596 9.784531 GAAATTCTATACTGATCTTCATGGGAA 57.215 33.333 0.00 0.00 0.00 3.97
5893 12597 9.163894 AGAAATTCTATACTGATCTTCATGGGA 57.836 33.333 0.00 0.00 0.00 4.37
5894 12598 9.790344 AAGAAATTCTATACTGATCTTCATGGG 57.210 33.333 0.00 0.00 0.00 4.00
5904 12608 9.958180 TGTTGAATGGAAGAAATTCTATACTGA 57.042 29.630 0.00 0.00 35.48 3.41
5908 12612 9.241919 TGCTTGTTGAATGGAAGAAATTCTATA 57.758 29.630 0.00 0.00 35.48 1.31
5912 12616 7.307573 CCTTTGCTTGTTGAATGGAAGAAATTC 60.308 37.037 0.00 0.00 35.10 2.17
5920 12624 2.037901 TGCCTTTGCTTGTTGAATGGA 58.962 42.857 0.00 0.00 38.71 3.41
5924 12628 1.868469 GCATGCCTTTGCTTGTTGAA 58.132 45.000 6.36 0.00 42.85 2.69
5934 12638 1.603678 CGCAAAACAGAGCATGCCTTT 60.604 47.619 15.66 4.28 35.41 3.11
5937 12670 0.039256 TTCGCAAAACAGAGCATGCC 60.039 50.000 15.66 6.03 35.41 4.40
5941 12674 1.838913 GCTTTTCGCAAAACAGAGCA 58.161 45.000 0.00 0.00 38.92 4.26
5959 12692 2.289945 ACAGTGGATCCTCTGTTCTTGC 60.290 50.000 33.76 5.35 44.99 4.01
6025 12758 5.988561 GTCATGGGAAGCTCTCATTAAGTAG 59.011 44.000 0.00 0.00 34.84 2.57
6033 12766 2.190538 TGATGTCATGGGAAGCTCTCA 58.809 47.619 0.00 0.00 0.00 3.27
6041 12774 3.805066 TGACCTTTTGATGTCATGGGA 57.195 42.857 0.00 0.00 36.62 4.37
6076 12809 2.582052 TCTGTTTGCAGTTGTTAGGGG 58.418 47.619 0.00 0.00 43.05 4.79
6090 12823 8.076910 AGAGATACATGAACTCTGATCTGTTT 57.923 34.615 15.71 0.00 39.17 2.83
6132 12865 3.646162 AGGGCAAGATGATCGTTACCATA 59.354 43.478 0.00 0.00 0.00 2.74
6160 12893 2.482664 GGCAGATTGCGATGAGAGAAGA 60.483 50.000 0.00 0.00 46.21 2.87
6167 12900 0.826062 TCTCTGGCAGATTGCGATGA 59.174 50.000 19.11 6.97 46.21 2.92
6169 12902 0.829333 AGTCTCTGGCAGATTGCGAT 59.171 50.000 19.11 0.00 46.21 4.58
6188 12921 5.168569 GGTATGTCAGTTCTGATTTCGTGA 58.831 41.667 5.80 0.00 0.00 4.35
6201 12934 3.885297 GCATATTTGCTGGGTATGTCAGT 59.115 43.478 0.35 0.00 45.77 3.41
6228 12961 5.185454 TGCTGATGTTAGAAGGTTACATGG 58.815 41.667 0.00 0.00 32.94 3.66
6280 13013 0.663153 GCATATCCTCCGGTGCAAAC 59.337 55.000 0.00 0.00 37.52 2.93
6322 13055 1.596477 GATGGCAAGGAGGCTAGCG 60.596 63.158 9.00 0.00 44.55 4.26
6325 13058 0.975556 TGACGATGGCAAGGAGGCTA 60.976 55.000 0.00 0.00 44.55 3.93
6342 13075 1.614525 AGCACAGAGGAGGCCATGA 60.615 57.895 5.01 0.00 0.00 3.07
6349 13082 1.214062 GACGGTGAGCACAGAGGAG 59.786 63.158 7.73 0.00 0.00 3.69
6355 13088 2.027024 GTCGTGACGGTGAGCACA 59.973 61.111 4.70 0.00 34.78 4.57
6370 13103 3.494378 TCGGTCATCGACGAGGTC 58.506 61.111 9.58 3.69 43.74 3.85
6403 13136 4.557385 GGGCCGGGGTTCATACCG 62.557 72.222 2.18 0.00 46.04 4.02
6421 13154 0.518636 CACACAAGATTCAGGGCACG 59.481 55.000 0.00 0.00 0.00 5.34
6445 13178 0.105964 TGTGTTCAGGAGGTTCACCG 59.894 55.000 0.00 0.00 42.08 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.