Multiple sequence alignment - TraesCS7D01G363000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G363000 chr7D 100.000 4097 0 0 1 4097 467156300 467160396 0.000000e+00 7566
1 TraesCS7D01G363000 chr7D 88.998 609 48 13 1378 1972 467042150 467042753 0.000000e+00 736
2 TraesCS7D01G363000 chr7D 86.230 443 53 3 2672 3106 467043897 467044339 1.330000e-129 473
3 TraesCS7D01G363000 chr7D 91.228 228 15 2 2031 2256 467042751 467042975 5.150000e-79 305
4 TraesCS7D01G363000 chr7D 84.175 297 33 6 328 616 467041009 467041299 4.030000e-70 276
5 TraesCS7D01G363000 chr7D 98.684 152 2 0 3248 3399 467159399 467159550 1.880000e-68 270
6 TraesCS7D01G363000 chr7D 98.684 152 2 0 3100 3251 467159547 467159698 1.880000e-68 270
7 TraesCS7D01G363000 chr7D 76.413 513 62 27 895 1389 467041663 467042134 5.330000e-54 222
8 TraesCS7D01G363000 chr7D 89.147 129 13 1 2486 2613 467043493 467043621 4.240000e-35 159
9 TraesCS7D01G363000 chr7A 93.056 1152 70 7 2084 3225 533583578 533582427 0.000000e+00 1676
10 TraesCS7D01G363000 chr7A 89.760 1123 59 23 982 2087 533584741 533583658 0.000000e+00 1386
11 TraesCS7D01G363000 chr7A 84.521 1305 127 37 1656 2923 533599620 533598354 0.000000e+00 1221
12 TraesCS7D01G363000 chr7A 88.298 470 43 4 3522 3991 533596533 533596076 1.660000e-153 553
13 TraesCS7D01G363000 chr7A 80.000 820 87 43 903 1669 533597332 533596537 6.030000e-148 534
14 TraesCS7D01G363000 chr7A 84.854 548 61 16 1127 1669 533600187 533599657 2.170000e-147 532
15 TraesCS7D01G363000 chr7A 89.247 279 21 5 341 616 533600980 533600708 1.410000e-89 340
16 TraesCS7D01G363000 chr7A 86.458 288 22 10 341 616 533585468 533585186 2.390000e-77 300
17 TraesCS7D01G363000 chr7A 93.229 192 11 2 426 616 533597827 533597637 8.670000e-72 281
18 TraesCS7D01G363000 chr7A 94.488 127 6 1 3248 3373 533582553 533582427 1.160000e-45 195
19 TraesCS7D01G363000 chr7A 89.583 144 14 1 14 156 533601270 533601127 9.050000e-42 182
20 TraesCS7D01G363000 chr7A 94.872 78 3 1 169 246 533585631 533585555 2.000000e-23 121
21 TraesCS7D01G363000 chr7A 97.143 70 0 1 178 245 533601135 533601066 2.590000e-22 117
22 TraesCS7D01G363000 chr7B 90.593 1265 61 20 834 2084 490675620 490676840 0.000000e+00 1624
23 TraesCS7D01G363000 chr7B 91.819 1149 65 16 2084 3225 490676964 490678090 0.000000e+00 1574
24 TraesCS7D01G363000 chr7B 90.183 601 56 3 3495 4093 490678207 490678806 0.000000e+00 780
25 TraesCS7D01G363000 chr7B 86.645 614 59 7 2614 3225 490673452 490674044 0.000000e+00 658
26 TraesCS7D01G363000 chr7B 92.361 288 21 1 328 615 490675090 490675376 3.810000e-110 409
27 TraesCS7D01G363000 chr7B 92.913 127 7 2 3248 3373 490677965 490678090 2.520000e-42 183
28 TraesCS7D01G363000 chr7B 90.299 134 11 2 3241 3373 490673912 490674044 1.510000e-39 174
29 TraesCS7D01G363000 chr7B 93.000 100 2 3 170 267 490674912 490675008 1.540000e-29 141
30 TraesCS7D01G363000 chr7B 95.181 83 4 0 68 150 490674837 490674919 9.240000e-27 132
31 TraesCS7D01G363000 chr6A 95.000 200 9 1 419 618 18743296 18743494 3.070000e-81 313
32 TraesCS7D01G363000 chr6A 93.000 200 13 1 419 618 18738150 18738348 1.440000e-74 291
33 TraesCS7D01G363000 chr5D 82.699 289 44 5 330 616 465030642 465030926 6.800000e-63 252
34 TraesCS7D01G363000 chr5B 90.576 191 17 1 428 618 572389803 572389992 6.800000e-63 252
35 TraesCS7D01G363000 chr4B 87.387 111 14 0 3927 4037 514049543 514049433 1.200000e-25 128
36 TraesCS7D01G363000 chr4A 87.000 100 13 0 3938 4037 47286901 47287000 3.350000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G363000 chr7D 467156300 467160396 4096 False 2702.000000 7566 99.122667 1 4097 3 chr7D.!!$F2 4096
1 TraesCS7D01G363000 chr7D 467041009 467044339 3330 False 361.833333 736 86.031833 328 3106 6 chr7D.!!$F1 2778
2 TraesCS7D01G363000 chr7A 533582427 533585631 3204 True 735.600000 1676 91.726800 169 3373 5 chr7A.!!$R1 3204
3 TraesCS7D01G363000 chr7A 533596076 533601270 5194 True 470.000000 1221 88.359375 14 3991 8 chr7A.!!$R2 3977
4 TraesCS7D01G363000 chr7B 490673452 490678806 5354 False 630.555556 1624 91.443778 68 4093 9 chr7B.!!$F1 4025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 1611 0.034089 GCCTGGTATGGGCTTTCAGT 60.034 55.0 0.00 0.0 45.57 3.41 F
961 2907 0.179048 CCTATCCATCTGGCACGCAA 60.179 55.0 0.00 0.0 34.44 4.85 F
2439 5045 0.449786 TTGATATGTTTGTGGCCGCG 59.550 50.0 12.58 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1123 3097 1.069358 AGACGCCTATAAGCCTTGCTC 59.931 52.381 0.00 0.0 38.25 4.26 R
2732 5595 0.179702 GAACCTCCGGTATGAACCCC 59.820 60.000 0.00 0.0 43.54 4.95 R
3341 7784 0.038892 AAGGCATGCTCTGTTTTGCG 60.039 50.000 18.92 0.0 35.95 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.169557 TGCTGGTGTATATACTTGGGTAAG 57.830 41.667 13.89 3.94 39.86 2.34
32 33 5.548406 CTGGTGTATATACTTGGGTAAGGC 58.452 45.833 13.89 0.00 38.26 4.35
48 49 3.328382 AAGGCACACGAATAGCAACTA 57.672 42.857 0.00 0.00 0.00 2.24
104 1423 7.384932 GCAAGCTGGAAATTTACAACATTTAGT 59.615 33.333 4.29 0.00 0.00 2.24
150 1469 9.631452 GATAGGAAATTGTTTCTCAAAAGAAGG 57.369 33.333 2.84 0.00 42.36 3.46
151 1470 6.820335 AGGAAATTGTTTCTCAAAAGAAGGG 58.180 36.000 2.84 0.00 42.36 3.95
152 1471 6.611236 AGGAAATTGTTTCTCAAAAGAAGGGA 59.389 34.615 2.84 0.00 42.36 4.20
153 1472 6.701841 GGAAATTGTTTCTCAAAAGAAGGGAC 59.298 38.462 2.84 0.00 42.36 4.46
154 1473 6.790232 AATTGTTTCTCAAAAGAAGGGACA 57.210 33.333 0.00 0.00 42.36 4.02
155 1474 5.835113 TTGTTTCTCAAAAGAAGGGACAG 57.165 39.130 0.00 0.00 42.36 3.51
156 1475 5.110814 TGTTTCTCAAAAGAAGGGACAGA 57.889 39.130 0.00 0.00 42.36 3.41
157 1476 4.881850 TGTTTCTCAAAAGAAGGGACAGAC 59.118 41.667 0.00 0.00 42.36 3.51
158 1477 3.771577 TCTCAAAAGAAGGGACAGACC 57.228 47.619 0.00 0.00 38.08 3.85
274 1593 6.620678 TGCATTTCAAACTGTTATAGAAGGC 58.379 36.000 0.00 7.49 0.00 4.35
278 1597 4.843728 TCAAACTGTTATAGAAGGCCTGG 58.156 43.478 5.69 0.00 0.00 4.45
279 1598 4.288626 TCAAACTGTTATAGAAGGCCTGGT 59.711 41.667 5.69 0.00 0.00 4.00
280 1599 5.486063 TCAAACTGTTATAGAAGGCCTGGTA 59.514 40.000 5.69 0.25 0.00 3.25
281 1600 6.157994 TCAAACTGTTATAGAAGGCCTGGTAT 59.842 38.462 5.69 9.30 0.00 2.73
282 1601 5.552870 ACTGTTATAGAAGGCCTGGTATG 57.447 43.478 5.69 0.00 0.00 2.39
283 1602 4.348168 ACTGTTATAGAAGGCCTGGTATGG 59.652 45.833 5.69 2.33 0.00 2.74
284 1603 3.650942 TGTTATAGAAGGCCTGGTATGGG 59.349 47.826 5.69 0.00 0.00 4.00
291 1610 2.799176 GCCTGGTATGGGCTTTCAG 58.201 57.895 0.00 0.00 45.57 3.02
292 1611 0.034089 GCCTGGTATGGGCTTTCAGT 60.034 55.000 0.00 0.00 45.57 3.41
293 1612 1.616994 GCCTGGTATGGGCTTTCAGTT 60.617 52.381 0.00 0.00 45.57 3.16
294 1613 2.807676 CCTGGTATGGGCTTTCAGTTT 58.192 47.619 0.00 0.00 0.00 2.66
295 1614 2.493278 CCTGGTATGGGCTTTCAGTTTG 59.507 50.000 0.00 0.00 0.00 2.93
296 1615 2.493278 CTGGTATGGGCTTTCAGTTTGG 59.507 50.000 0.00 0.00 0.00 3.28
297 1616 1.824852 GGTATGGGCTTTCAGTTTGGG 59.175 52.381 0.00 0.00 0.00 4.12
298 1617 1.204704 GTATGGGCTTTCAGTTTGGGC 59.795 52.381 0.00 0.00 0.00 5.36
299 1618 1.194121 ATGGGCTTTCAGTTTGGGCC 61.194 55.000 0.00 0.00 43.45 5.80
300 1619 3.059982 GGCTTTCAGTTTGGGCCC 58.940 61.111 17.59 17.59 37.12 5.80
301 1620 1.836604 GGCTTTCAGTTTGGGCCCA 60.837 57.895 24.45 24.45 37.12 5.36
302 1621 1.406860 GGCTTTCAGTTTGGGCCCAA 61.407 55.000 34.07 34.07 37.12 4.12
303 1622 0.467804 GCTTTCAGTTTGGGCCCAAA 59.532 50.000 40.46 40.46 42.77 3.28
315 1634 1.616159 GGCCCAAACTGCTACAGAAA 58.384 50.000 0.78 0.00 35.18 2.52
329 1697 2.587522 ACAGAAAAGAAGGGAAGGCAC 58.412 47.619 0.00 0.00 0.00 5.01
333 1701 3.117512 AGAAAAGAAGGGAAGGCACAAGA 60.118 43.478 0.00 0.00 0.00 3.02
353 1721 0.755686 CCTGGTATGGGCTCTCAGTC 59.244 60.000 0.00 0.00 0.00 3.51
374 1742 2.747855 GCCCAAACTAGCAGCGCT 60.748 61.111 2.64 2.64 43.41 5.92
376 1744 1.024579 GCCCAAACTAGCAGCGCTAA 61.025 55.000 10.99 0.00 40.82 3.09
384 1752 4.445545 GCAGCGCTAACGTGTGCC 62.446 66.667 10.99 1.72 43.73 5.01
466 1850 2.441164 GAGGAGGAGCGCAGAGGA 60.441 66.667 11.47 0.00 0.00 3.71
502 1886 1.446966 GAGACCTGCCTCAGCGTTC 60.447 63.158 0.00 0.00 44.31 3.95
505 1889 2.743928 CCTGCCTCAGCGTTCCAC 60.744 66.667 0.00 0.00 44.31 4.02
549 1933 9.817809 CTTTTGGCTAAGATCAAGTGTAGTATA 57.182 33.333 0.00 0.00 0.00 1.47
590 1974 2.241941 TCTGATATGTGGGCCATGTGTT 59.758 45.455 10.70 0.00 34.86 3.32
591 1975 3.025978 CTGATATGTGGGCCATGTGTTT 58.974 45.455 10.70 0.00 34.86 2.83
703 2538 2.654863 CTGTTGGGTTTGTCTCCAGTT 58.345 47.619 0.00 0.00 34.17 3.16
710 2545 4.349636 TGGGTTTGTCTCCAGTTCATAGAA 59.650 41.667 0.00 0.00 0.00 2.10
711 2546 5.163141 TGGGTTTGTCTCCAGTTCATAGAAA 60.163 40.000 0.00 0.00 0.00 2.52
712 2547 5.768164 GGGTTTGTCTCCAGTTCATAGAAAA 59.232 40.000 0.00 0.00 0.00 2.29
713 2548 6.264518 GGGTTTGTCTCCAGTTCATAGAAAAA 59.735 38.462 0.00 0.00 0.00 1.94
714 2549 7.363431 GGTTTGTCTCCAGTTCATAGAAAAAG 58.637 38.462 0.00 0.00 29.32 2.27
715 2550 7.228706 GGTTTGTCTCCAGTTCATAGAAAAAGA 59.771 37.037 0.00 0.00 29.32 2.52
716 2551 8.787852 GTTTGTCTCCAGTTCATAGAAAAAGAT 58.212 33.333 0.00 0.00 29.32 2.40
717 2552 8.553459 TTGTCTCCAGTTCATAGAAAAAGATC 57.447 34.615 0.00 0.00 0.00 2.75
718 2553 7.911651 TGTCTCCAGTTCATAGAAAAAGATCT 58.088 34.615 0.00 0.00 0.00 2.75
719 2554 8.378565 TGTCTCCAGTTCATAGAAAAAGATCTT 58.621 33.333 0.88 0.88 0.00 2.40
720 2555 8.878769 GTCTCCAGTTCATAGAAAAAGATCTTC 58.121 37.037 8.78 0.00 0.00 2.87
738 2573 9.767228 AAGATCTTCATCTTCATGTATTCAGAG 57.233 33.333 0.88 0.00 44.86 3.35
739 2574 8.926374 AGATCTTCATCTTCATGTATTCAGAGT 58.074 33.333 0.00 0.00 35.67 3.24
740 2575 9.545105 GATCTTCATCTTCATGTATTCAGAGTT 57.455 33.333 0.00 0.00 0.00 3.01
743 2578 7.312657 TCATCTTCATGTATTCAGAGTTTGC 57.687 36.000 0.00 0.00 0.00 3.68
748 2583 7.877612 TCTTCATGTATTCAGAGTTTGCAACTA 59.122 33.333 0.00 0.00 43.03 2.24
749 2584 7.601073 TCATGTATTCAGAGTTTGCAACTAG 57.399 36.000 0.00 0.00 43.03 2.57
750 2585 7.386059 TCATGTATTCAGAGTTTGCAACTAGA 58.614 34.615 0.00 0.00 43.03 2.43
757 2592 4.450419 CAGAGTTTGCAACTAGAGGTGAAG 59.550 45.833 0.00 0.00 43.03 3.02
759 2594 5.304614 AGAGTTTGCAACTAGAGGTGAAGTA 59.695 40.000 0.00 0.00 43.03 2.24
760 2595 5.925509 AGTTTGCAACTAGAGGTGAAGTAA 58.074 37.500 0.00 0.00 40.69 2.24
761 2596 6.534634 AGTTTGCAACTAGAGGTGAAGTAAT 58.465 36.000 0.00 0.00 40.69 1.89
762 2597 6.651225 AGTTTGCAACTAGAGGTGAAGTAATC 59.349 38.462 0.00 0.00 40.69 1.75
763 2598 5.086104 TGCAACTAGAGGTGAAGTAATCC 57.914 43.478 0.00 0.00 0.00 3.01
765 2600 4.381718 GCAACTAGAGGTGAAGTAATCCGT 60.382 45.833 0.00 0.00 0.00 4.69
766 2601 5.341617 CAACTAGAGGTGAAGTAATCCGTC 58.658 45.833 0.00 0.00 0.00 4.79
767 2602 4.597004 ACTAGAGGTGAAGTAATCCGTCA 58.403 43.478 0.00 0.00 0.00 4.35
768 2603 5.202004 ACTAGAGGTGAAGTAATCCGTCAT 58.798 41.667 0.00 0.00 34.04 3.06
769 2604 5.657302 ACTAGAGGTGAAGTAATCCGTCATT 59.343 40.000 0.00 0.00 34.04 2.57
770 2605 5.422214 AGAGGTGAAGTAATCCGTCATTT 57.578 39.130 0.00 0.00 34.04 2.32
771 2606 5.420409 AGAGGTGAAGTAATCCGTCATTTC 58.580 41.667 0.00 0.00 34.04 2.17
775 2610 7.335627 AGGTGAAGTAATCCGTCATTTCATTA 58.664 34.615 0.00 0.00 34.04 1.90
776 2611 7.993183 AGGTGAAGTAATCCGTCATTTCATTAT 59.007 33.333 0.00 0.00 34.04 1.28
777 2612 9.268268 GGTGAAGTAATCCGTCATTTCATTATA 57.732 33.333 0.00 0.00 34.04 0.98
801 2636 9.836864 ATAATTTTTCCATCTTAAATTCCCTGC 57.163 29.630 0.00 0.00 34.39 4.85
802 2637 6.678568 TTTTTCCATCTTAAATTCCCTGCA 57.321 33.333 0.00 0.00 0.00 4.41
803 2638 6.872585 TTTTCCATCTTAAATTCCCTGCAT 57.127 33.333 0.00 0.00 0.00 3.96
804 2639 6.872585 TTTCCATCTTAAATTCCCTGCATT 57.127 33.333 0.00 0.00 0.00 3.56
805 2640 5.857471 TCCATCTTAAATTCCCTGCATTG 57.143 39.130 0.00 0.00 0.00 2.82
806 2641 5.517924 TCCATCTTAAATTCCCTGCATTGA 58.482 37.500 0.00 0.00 0.00 2.57
807 2642 5.957168 TCCATCTTAAATTCCCTGCATTGAA 59.043 36.000 0.00 0.00 0.00 2.69
808 2643 6.440010 TCCATCTTAAATTCCCTGCATTGAAA 59.560 34.615 2.58 0.00 0.00 2.69
809 2644 7.126115 TCCATCTTAAATTCCCTGCATTGAAAT 59.874 33.333 2.58 0.00 0.00 2.17
810 2645 7.440255 CCATCTTAAATTCCCTGCATTGAAATC 59.560 37.037 2.58 0.00 0.00 2.17
811 2646 7.722949 TCTTAAATTCCCTGCATTGAAATCT 57.277 32.000 2.58 0.00 0.00 2.40
812 2647 7.775120 TCTTAAATTCCCTGCATTGAAATCTC 58.225 34.615 2.58 0.00 0.00 2.75
813 2648 5.349061 AAATTCCCTGCATTGAAATCTCC 57.651 39.130 2.58 0.00 0.00 3.71
814 2649 3.454719 TTCCCTGCATTGAAATCTCCA 57.545 42.857 0.00 0.00 0.00 3.86
878 2745 7.067737 CGGTACAATAATTACAAAAGGGATGGT 59.932 37.037 0.00 0.00 0.00 3.55
961 2907 0.179048 CCTATCCATCTGGCACGCAA 60.179 55.000 0.00 0.00 34.44 4.85
962 2908 0.940126 CTATCCATCTGGCACGCAAC 59.060 55.000 0.00 0.00 34.44 4.17
963 2909 0.809636 TATCCATCTGGCACGCAACG 60.810 55.000 0.00 0.00 34.44 4.10
964 2910 2.803155 ATCCATCTGGCACGCAACGT 62.803 55.000 0.00 0.00 42.36 3.99
965 2911 2.476051 CATCTGGCACGCAACGTC 59.524 61.111 0.00 0.00 38.32 4.34
966 2912 2.742372 ATCTGGCACGCAACGTCC 60.742 61.111 0.00 0.00 38.32 4.79
967 2913 3.529341 ATCTGGCACGCAACGTCCA 62.529 57.895 9.71 9.71 38.32 4.02
969 2915 4.840005 TGGCACGCAACGTCCACA 62.840 61.111 0.00 0.00 38.32 4.17
971 2917 2.030401 GGCACGCAACGTCCACATA 61.030 57.895 0.00 0.00 38.32 2.29
972 2918 1.419922 GCACGCAACGTCCACATAG 59.580 57.895 0.00 0.00 38.32 2.23
973 2919 1.011968 GCACGCAACGTCCACATAGA 61.012 55.000 0.00 0.00 38.32 1.98
975 2921 1.795872 CACGCAACGTCCACATAGAAA 59.204 47.619 0.00 0.00 38.32 2.52
976 2922 2.066262 ACGCAACGTCCACATAGAAAG 58.934 47.619 0.00 0.00 33.69 2.62
978 2924 2.345641 CGCAACGTCCACATAGAAAGAG 59.654 50.000 0.00 0.00 0.00 2.85
1029 2997 1.562008 GAGGAAGAGGGAAGGAAAGGG 59.438 57.143 0.00 0.00 0.00 3.95
1123 3097 2.813754 TCCAACTCATCTTTTGCTTCGG 59.186 45.455 0.00 0.00 0.00 4.30
1125 3099 3.120060 CCAACTCATCTTTTGCTTCGGAG 60.120 47.826 0.00 0.00 0.00 4.63
1182 3157 1.091771 GGATGTGGATGTGCGTGGAG 61.092 60.000 0.00 0.00 0.00 3.86
1210 3185 4.192317 GACTCCATTTATCAGCTTCGGTT 58.808 43.478 0.00 0.00 0.00 4.44
1248 3223 2.623416 ACTGTTTTTAGGCACAAGAGGC 59.377 45.455 0.00 0.00 0.00 4.70
1281 3258 3.980698 TGGATAAGTAGAGGATTTGGGGG 59.019 47.826 0.00 0.00 0.00 5.40
1329 3308 1.826385 GCACAGGTCTTGCTTGGTAT 58.174 50.000 0.00 0.00 37.00 2.73
1658 3680 3.611766 ACCCGTGTCTCTGGAATTTAG 57.388 47.619 0.00 0.00 0.00 1.85
1678 3750 6.553953 TTAGCCACCTAAATGACTGTGATA 57.446 37.500 0.00 0.00 30.81 2.15
2040 4134 4.810191 ACAGATACTTTGAGTGTCCCTC 57.190 45.455 1.85 0.00 37.08 4.30
2041 4135 4.421131 ACAGATACTTTGAGTGTCCCTCT 58.579 43.478 1.85 0.00 37.08 3.69
2043 4137 5.174395 CAGATACTTTGAGTGTCCCTCTTG 58.826 45.833 1.85 0.00 37.08 3.02
2045 4139 6.017192 AGATACTTTGAGTGTCCCTCTTGTA 58.983 40.000 1.85 0.00 37.08 2.41
2055 4149 4.157120 CTCTTGTACCGGCGGGGG 62.157 72.222 31.78 14.46 41.60 5.40
2060 4154 1.270414 TTGTACCGGCGGGGGAATTA 61.270 55.000 31.78 9.44 41.60 1.40
2068 4162 0.532196 GCGGGGGAATTACTCTTCCG 60.532 60.000 0.00 0.00 44.79 4.30
2199 4429 8.270744 AGCTGATGAAGACTATACCAAATTCTT 58.729 33.333 0.00 0.00 0.00 2.52
2311 4905 7.662604 AATTACAACTGTCTTTAGTTACCGG 57.337 36.000 0.00 0.00 38.78 5.28
2366 4960 5.329399 TGGGCAACAGTTTACTCCATTATT 58.671 37.500 0.00 0.00 39.74 1.40
2439 5045 0.449786 TTGATATGTTTGTGGCCGCG 59.550 50.000 12.58 0.00 0.00 6.46
2506 5118 9.874205 TGAAGATGAAAAATCCATCCATAAAAC 57.126 29.630 0.00 0.00 40.85 2.43
2553 5166 3.804036 CGCTGTAATTTCAGGTATCCCA 58.196 45.455 13.25 0.00 36.12 4.37
2588 5207 4.065088 GTGGTGCTAGTTTCAAGTCATGA 58.935 43.478 0.00 0.00 35.85 3.07
2626 5488 6.032094 CAGAACCATCAATGAATAAGTGCAC 58.968 40.000 9.40 9.40 0.00 4.57
2792 5655 2.027024 GTCGTGACGGTGAGCACA 59.973 61.111 4.70 0.00 34.78 4.57
2805 5668 1.614525 AGCACAGAGGAGGCCATGA 60.615 57.895 5.01 0.00 0.00 3.07
2822 5692 0.975556 TGACGATGGCAAGGAGGCTA 60.976 55.000 0.00 0.00 44.55 3.93
3071 6467 2.582052 TCTGTTTGCAGTTGTTAGGGG 58.418 47.619 0.00 0.00 43.05 4.79
3106 6502 3.805066 TGACCTTTTGATGTCATGGGA 57.195 42.857 0.00 0.00 36.62 4.37
3235 7678 7.307573 CCTTTGCTTGTTGAATGGAAGAAATTC 60.308 37.037 0.00 0.00 35.10 2.17
3239 7682 9.241919 TGCTTGTTGAATGGAAGAAATTCTATA 57.758 29.630 0.00 0.00 35.48 1.31
3243 7686 9.958180 TGTTGAATGGAAGAAATTCTATACTGA 57.042 29.630 0.00 0.00 35.48 3.41
3253 7696 9.790344 AAGAAATTCTATACTGATCTTCATGGG 57.210 33.333 0.00 0.00 0.00 4.00
3254 7697 9.163894 AGAAATTCTATACTGATCTTCATGGGA 57.836 33.333 0.00 0.00 0.00 4.37
3268 7711 5.435291 CTTCATGGGAAGCTCTCATTAAGT 58.565 41.667 9.82 0.00 43.67 2.24
3269 7712 6.560003 TTCATGGGAAGCTCTCATTAAGTA 57.440 37.500 0.00 0.00 34.84 2.24
3270 7713 6.166984 TCATGGGAAGCTCTCATTAAGTAG 57.833 41.667 0.00 0.00 34.84 2.57
3271 7714 5.899547 TCATGGGAAGCTCTCATTAAGTAGA 59.100 40.000 0.00 0.00 34.84 2.59
3272 7715 6.384015 TCATGGGAAGCTCTCATTAAGTAGAA 59.616 38.462 0.00 0.00 34.84 2.10
3275 7718 5.994668 GGGAAGCTCTCATTAAGTAGAATGG 59.005 44.000 0.00 0.00 37.41 3.16
3276 7719 5.994668 GGAAGCTCTCATTAAGTAGAATGGG 59.005 44.000 0.00 0.00 38.46 4.00
3278 7721 5.923204 AGCTCTCATTAAGTAGAATGGGTG 58.077 41.667 0.00 0.00 38.29 4.61
3279 7722 4.513318 GCTCTCATTAAGTAGAATGGGTGC 59.487 45.833 7.15 7.15 44.78 5.01
3280 7723 5.686124 GCTCTCATTAAGTAGAATGGGTGCT 60.686 44.000 13.19 0.00 46.26 4.40
3281 7724 6.463049 GCTCTCATTAAGTAGAATGGGTGCTA 60.463 42.308 13.19 0.00 46.26 3.49
3282 7725 7.618019 TCTCATTAAGTAGAATGGGTGCTAT 57.382 36.000 0.00 0.00 38.29 2.97
3283 7726 8.034313 TCTCATTAAGTAGAATGGGTGCTATT 57.966 34.615 0.00 0.00 38.29 1.73
3287 7730 9.736023 CATTAAGTAGAATGGGTGCTATTTTTC 57.264 33.333 0.00 0.00 33.86 2.29
3289 7732 7.961326 AAGTAGAATGGGTGCTATTTTTCAT 57.039 32.000 0.00 0.00 0.00 2.57
3290 7733 7.338800 AGTAGAATGGGTGCTATTTTTCATG 57.661 36.000 0.00 0.00 0.00 3.07
3291 7734 6.891908 AGTAGAATGGGTGCTATTTTTCATGT 59.108 34.615 0.00 0.00 0.00 3.21
3292 7735 5.969423 AGAATGGGTGCTATTTTTCATGTG 58.031 37.500 0.00 0.00 0.00 3.21
3293 7736 5.481473 AGAATGGGTGCTATTTTTCATGTGT 59.519 36.000 0.00 0.00 0.00 3.72
3295 7738 5.543507 TGGGTGCTATTTTTCATGTGTTT 57.456 34.783 0.00 0.00 0.00 2.83
3296 7739 5.295950 TGGGTGCTATTTTTCATGTGTTTG 58.704 37.500 0.00 0.00 0.00 2.93
3297 7740 5.163364 TGGGTGCTATTTTTCATGTGTTTGT 60.163 36.000 0.00 0.00 0.00 2.83
3298 7741 6.040955 TGGGTGCTATTTTTCATGTGTTTGTA 59.959 34.615 0.00 0.00 0.00 2.41
3299 7742 6.926272 GGGTGCTATTTTTCATGTGTTTGTAA 59.074 34.615 0.00 0.00 0.00 2.41
3300 7743 7.116233 GGGTGCTATTTTTCATGTGTTTGTAAG 59.884 37.037 0.00 0.00 0.00 2.34
3302 7745 8.479280 GTGCTATTTTTCATGTGTTTGTAAGTG 58.521 33.333 0.00 0.00 0.00 3.16
3303 7746 8.194104 TGCTATTTTTCATGTGTTTGTAAGTGT 58.806 29.630 0.00 0.00 0.00 3.55
3304 7747 8.690840 GCTATTTTTCATGTGTTTGTAAGTGTC 58.309 33.333 0.00 0.00 0.00 3.67
3305 7748 9.729023 CTATTTTTCATGTGTTTGTAAGTGTCA 57.271 29.630 0.00 0.00 0.00 3.58
3306 7749 8.633075 ATTTTTCATGTGTTTGTAAGTGTCAG 57.367 30.769 0.00 0.00 0.00 3.51
3307 7750 4.811555 TCATGTGTTTGTAAGTGTCAGC 57.188 40.909 0.00 0.00 0.00 4.26
3308 7751 4.195416 TCATGTGTTTGTAAGTGTCAGCA 58.805 39.130 0.00 0.00 0.00 4.41
3309 7752 4.035091 TCATGTGTTTGTAAGTGTCAGCAC 59.965 41.667 0.00 0.00 45.57 4.40
3319 7762 2.240493 GTGTCAGCACAAGGTACAGT 57.760 50.000 0.00 0.00 44.64 3.55
3320 7763 1.867233 GTGTCAGCACAAGGTACAGTG 59.133 52.381 7.68 7.68 44.64 3.66
3321 7764 1.202639 TGTCAGCACAAGGTACAGTGG 60.203 52.381 12.37 0.49 37.17 4.00
3322 7765 1.070134 GTCAGCACAAGGTACAGTGGA 59.930 52.381 12.37 0.00 37.17 4.02
3323 7766 1.977854 TCAGCACAAGGTACAGTGGAT 59.022 47.619 12.37 0.00 37.17 3.41
3324 7767 2.028112 TCAGCACAAGGTACAGTGGATC 60.028 50.000 12.37 0.00 37.17 3.36
3325 7768 1.279271 AGCACAAGGTACAGTGGATCC 59.721 52.381 4.20 4.20 37.17 3.36
3326 7769 1.279271 GCACAAGGTACAGTGGATCCT 59.721 52.381 14.23 0.00 37.17 3.24
3327 7770 2.678190 GCACAAGGTACAGTGGATCCTC 60.678 54.545 14.23 9.81 37.17 3.71
3328 7771 2.834549 CACAAGGTACAGTGGATCCTCT 59.165 50.000 14.23 12.34 33.93 3.69
3329 7772 2.834549 ACAAGGTACAGTGGATCCTCTG 59.165 50.000 32.61 32.61 41.62 3.35
3331 7774 3.191888 AGGTACAGTGGATCCTCTGTT 57.808 47.619 39.94 26.51 44.99 3.16
3332 7775 3.100671 AGGTACAGTGGATCCTCTGTTC 58.899 50.000 39.94 35.01 44.99 3.18
3333 7776 3.100671 GGTACAGTGGATCCTCTGTTCT 58.899 50.000 39.94 25.16 44.99 3.01
3334 7777 3.515901 GGTACAGTGGATCCTCTGTTCTT 59.484 47.826 39.94 24.87 44.99 2.52
3335 7778 3.692257 ACAGTGGATCCTCTGTTCTTG 57.308 47.619 33.76 17.15 44.99 3.02
3336 7779 2.289945 ACAGTGGATCCTCTGTTCTTGC 60.290 50.000 33.76 5.35 44.99 4.01
3337 7780 2.027377 CAGTGGATCCTCTGTTCTTGCT 60.027 50.000 28.32 0.00 34.13 3.91
3338 7781 2.641815 AGTGGATCCTCTGTTCTTGCTT 59.358 45.455 15.52 0.00 0.00 3.91
3339 7782 3.073650 AGTGGATCCTCTGTTCTTGCTTT 59.926 43.478 15.52 0.00 0.00 3.51
3340 7783 3.823304 GTGGATCCTCTGTTCTTGCTTTT 59.177 43.478 14.23 0.00 0.00 2.27
3341 7784 4.074970 TGGATCCTCTGTTCTTGCTTTTC 58.925 43.478 14.23 0.00 0.00 2.29
3342 7785 3.126000 GGATCCTCTGTTCTTGCTTTTCG 59.874 47.826 3.84 0.00 0.00 3.46
3343 7786 1.873591 TCCTCTGTTCTTGCTTTTCGC 59.126 47.619 0.00 0.00 39.77 4.70
3354 7797 1.838913 GCTTTTCGCAAAACAGAGCA 58.161 45.000 0.00 0.00 38.92 4.26
3355 7798 2.397549 GCTTTTCGCAAAACAGAGCAT 58.602 42.857 0.00 0.00 38.92 3.79
3356 7799 2.154389 GCTTTTCGCAAAACAGAGCATG 59.846 45.455 0.00 0.00 38.92 4.06
3357 7800 1.769733 TTTCGCAAAACAGAGCATGC 58.230 45.000 10.51 10.51 35.49 4.06
3358 7801 0.039256 TTCGCAAAACAGAGCATGCC 60.039 50.000 15.66 6.03 35.41 4.40
3359 7802 0.890542 TCGCAAAACAGAGCATGCCT 60.891 50.000 15.66 8.56 35.41 4.75
3360 7803 0.038892 CGCAAAACAGAGCATGCCTT 60.039 50.000 15.66 0.00 35.41 4.35
3361 7804 1.603678 CGCAAAACAGAGCATGCCTTT 60.604 47.619 15.66 4.28 35.41 3.11
3362 7805 1.796459 GCAAAACAGAGCATGCCTTTG 59.204 47.619 15.66 16.12 37.76 2.77
3363 7806 1.796459 CAAAACAGAGCATGCCTTTGC 59.204 47.619 15.66 0.00 43.09 3.68
3370 7813 3.591979 GCATGCCTTTGCTTGTTGA 57.408 47.368 6.36 0.00 42.85 3.18
3371 7814 1.868469 GCATGCCTTTGCTTGTTGAA 58.132 45.000 6.36 0.00 42.85 2.69
3372 7815 2.419667 GCATGCCTTTGCTTGTTGAAT 58.580 42.857 6.36 0.00 42.85 2.57
3373 7816 2.158841 GCATGCCTTTGCTTGTTGAATG 59.841 45.455 6.36 0.00 42.85 2.67
3374 7817 2.529780 TGCCTTTGCTTGTTGAATGG 57.470 45.000 0.00 0.00 38.71 3.16
3375 7818 2.037901 TGCCTTTGCTTGTTGAATGGA 58.962 42.857 0.00 0.00 38.71 3.41
3376 7819 2.433604 TGCCTTTGCTTGTTGAATGGAA 59.566 40.909 0.00 0.00 38.71 3.53
3377 7820 3.062042 GCCTTTGCTTGTTGAATGGAAG 58.938 45.455 0.00 0.00 33.53 3.46
3378 7821 3.243839 GCCTTTGCTTGTTGAATGGAAGA 60.244 43.478 0.00 0.00 33.53 2.87
3379 7822 4.553323 CCTTTGCTTGTTGAATGGAAGAG 58.447 43.478 0.00 0.00 0.00 2.85
3380 7823 4.279169 CCTTTGCTTGTTGAATGGAAGAGA 59.721 41.667 0.00 0.00 0.00 3.10
3381 7824 5.047519 CCTTTGCTTGTTGAATGGAAGAGAT 60.048 40.000 0.00 0.00 0.00 2.75
3382 7825 6.409524 TTTGCTTGTTGAATGGAAGAGATT 57.590 33.333 0.00 0.00 0.00 2.40
3383 7826 5.633830 TGCTTGTTGAATGGAAGAGATTC 57.366 39.130 0.00 0.00 0.00 2.52
3384 7827 5.319453 TGCTTGTTGAATGGAAGAGATTCT 58.681 37.500 0.00 0.00 32.04 2.40
3385 7828 6.475504 TGCTTGTTGAATGGAAGAGATTCTA 58.524 36.000 0.00 0.00 32.04 2.10
3386 7829 7.114754 TGCTTGTTGAATGGAAGAGATTCTAT 58.885 34.615 0.00 0.00 32.04 1.98
3387 7830 8.267183 TGCTTGTTGAATGGAAGAGATTCTATA 58.733 33.333 0.00 0.00 32.04 1.31
3388 7831 8.555361 GCTTGTTGAATGGAAGAGATTCTATAC 58.445 37.037 0.00 0.00 32.04 1.47
3389 7832 9.829507 CTTGTTGAATGGAAGAGATTCTATACT 57.170 33.333 0.00 0.00 32.04 2.12
3392 7835 9.995003 GTTGAATGGAAGAGATTCTATACTGAT 57.005 33.333 0.00 0.00 32.04 2.90
3404 7847 9.836179 AGATTCTATACTGATCTTCATAAGGGT 57.164 33.333 0.00 0.00 0.00 4.34
3423 7866 5.950023 AGGGTACTCCTATCTTATCAACGA 58.050 41.667 1.40 0.00 45.98 3.85
3424 7867 6.005198 AGGGTACTCCTATCTTATCAACGAG 58.995 44.000 1.40 0.00 45.98 4.18
3427 7870 4.805744 ACTCCTATCTTATCAACGAGGGT 58.194 43.478 0.00 0.00 0.00 4.34
3428 7871 4.828387 ACTCCTATCTTATCAACGAGGGTC 59.172 45.833 0.00 0.00 0.00 4.46
3431 7874 4.021894 CCTATCTTATCAACGAGGGTCCAG 60.022 50.000 0.00 0.00 0.00 3.86
3432 7875 3.095912 TCTTATCAACGAGGGTCCAGA 57.904 47.619 0.00 0.00 0.00 3.86
3433 7876 2.758979 TCTTATCAACGAGGGTCCAGAC 59.241 50.000 0.00 0.00 0.00 3.51
3435 7878 0.898320 ATCAACGAGGGTCCAGACAG 59.102 55.000 0.00 0.00 0.00 3.51
3436 7879 1.185618 TCAACGAGGGTCCAGACAGG 61.186 60.000 0.00 0.00 39.47 4.00
3437 7880 2.584391 AACGAGGGTCCAGACAGGC 61.584 63.158 0.00 0.00 37.29 4.85
3438 7881 3.775654 CGAGGGTCCAGACAGGCC 61.776 72.222 0.00 0.00 37.29 5.19
3439 7882 2.284995 GAGGGTCCAGACAGGCCT 60.285 66.667 0.00 0.00 37.29 5.19
3440 7883 1.001760 GAGGGTCCAGACAGGCCTA 59.998 63.158 3.98 0.00 37.29 3.93
3441 7884 0.399233 GAGGGTCCAGACAGGCCTAT 60.399 60.000 3.98 0.00 37.29 2.57
3442 7885 0.044855 AGGGTCCAGACAGGCCTATT 59.955 55.000 3.98 0.00 37.29 1.73
3443 7886 0.919710 GGGTCCAGACAGGCCTATTT 59.080 55.000 3.98 0.00 37.29 1.40
3445 7888 2.508300 GGGTCCAGACAGGCCTATTTAA 59.492 50.000 3.98 0.00 37.29 1.52
3446 7889 3.138468 GGGTCCAGACAGGCCTATTTAAT 59.862 47.826 3.98 0.00 37.29 1.40
3447 7890 4.390264 GGTCCAGACAGGCCTATTTAATC 58.610 47.826 3.98 0.00 37.29 1.75
3448 7891 4.103311 GGTCCAGACAGGCCTATTTAATCT 59.897 45.833 3.98 0.00 37.29 2.40
3449 7892 5.307196 GGTCCAGACAGGCCTATTTAATCTA 59.693 44.000 3.98 0.00 37.29 1.98
3450 7893 6.459923 GTCCAGACAGGCCTATTTAATCTAG 58.540 44.000 3.98 0.00 37.29 2.43
3452 7895 5.280215 CCAGACAGGCCTATTTAATCTAGGG 60.280 48.000 3.98 0.00 36.94 3.53
3453 7896 5.308237 CAGACAGGCCTATTTAATCTAGGGT 59.692 44.000 3.98 0.00 36.94 4.34
3454 7897 5.911766 AGACAGGCCTATTTAATCTAGGGTT 59.088 40.000 3.98 0.00 36.94 4.11
3455 7898 6.390165 AGACAGGCCTATTTAATCTAGGGTTT 59.610 38.462 3.98 0.00 36.94 3.27
3456 7899 6.981737 ACAGGCCTATTTAATCTAGGGTTTT 58.018 36.000 3.98 0.00 36.94 2.43
3457 7900 7.419203 ACAGGCCTATTTAATCTAGGGTTTTT 58.581 34.615 3.98 0.00 36.94 1.94
3492 7935 9.757227 AGAGAACATCATCAATAGTAACTAAGC 57.243 33.333 0.00 0.00 0.00 3.09
3493 7936 9.757227 GAGAACATCATCAATAGTAACTAAGCT 57.243 33.333 0.00 0.00 0.00 3.74
3586 8041 6.681777 AGAAGTCACAAATTGCTATTGAACC 58.318 36.000 0.00 0.00 0.00 3.62
3587 8042 5.391312 AGTCACAAATTGCTATTGAACCC 57.609 39.130 0.00 0.00 0.00 4.11
3588 8043 5.079643 AGTCACAAATTGCTATTGAACCCT 58.920 37.500 0.00 0.00 0.00 4.34
3589 8044 5.183904 AGTCACAAATTGCTATTGAACCCTC 59.816 40.000 0.00 0.00 0.00 4.30
3590 8045 5.183904 GTCACAAATTGCTATTGAACCCTCT 59.816 40.000 0.00 0.00 0.00 3.69
3591 8046 5.183713 TCACAAATTGCTATTGAACCCTCTG 59.816 40.000 0.00 0.00 0.00 3.35
3592 8047 5.047802 CACAAATTGCTATTGAACCCTCTGT 60.048 40.000 0.00 0.00 0.00 3.41
3593 8048 6.150976 CACAAATTGCTATTGAACCCTCTGTA 59.849 38.462 0.00 0.00 0.00 2.74
3594 8049 6.151144 ACAAATTGCTATTGAACCCTCTGTAC 59.849 38.462 0.00 0.00 0.00 2.90
3595 8050 4.901197 TTGCTATTGAACCCTCTGTACA 57.099 40.909 0.00 0.00 0.00 2.90
3596 8051 4.901197 TGCTATTGAACCCTCTGTACAA 57.099 40.909 0.00 0.00 0.00 2.41
3597 8052 4.832248 TGCTATTGAACCCTCTGTACAAG 58.168 43.478 0.00 0.00 0.00 3.16
3608 8063 6.702329 ACCCTCTGTACAAGTCATAGAAAAG 58.298 40.000 0.00 0.00 0.00 2.27
3622 8077 9.209175 AGTCATAGAAAAGTATTGAAGTGTGTC 57.791 33.333 0.00 0.00 0.00 3.67
3675 8130 4.789012 TTTTGATCAGGAAGATGCCAAC 57.211 40.909 0.00 0.00 37.00 3.77
3735 8190 5.657302 TCTCTTGAGGTTATCCTTGTAGTCC 59.343 44.000 0.00 0.00 45.24 3.85
3756 8211 2.921754 CACGAAGTACAACCCGAATCTC 59.078 50.000 0.00 0.00 41.61 2.75
3771 8226 2.073252 ATCTCGAGGTGTATCCAGCA 57.927 50.000 13.56 0.00 41.60 4.41
3840 8295 2.671070 CAACCGTCCTCCCTGCAT 59.329 61.111 0.00 0.00 0.00 3.96
3846 8301 1.949525 CCGTCCTCCCTGCATAAATTG 59.050 52.381 0.00 0.00 0.00 2.32
3864 8319 9.301153 CATAAATTGCAGTACCAAAGATTAACC 57.699 33.333 0.00 0.00 0.00 2.85
3865 8320 6.909550 AATTGCAGTACCAAAGATTAACCA 57.090 33.333 0.00 0.00 0.00 3.67
3887 8342 8.814038 ACCAATCTATGAATAGCAAAAGAAGT 57.186 30.769 0.00 0.00 0.00 3.01
3914 8369 6.155565 TCGACTGATCAAGGGAAGGTAAAATA 59.844 38.462 0.00 0.00 0.00 1.40
3915 8370 6.480320 CGACTGATCAAGGGAAGGTAAAATAG 59.520 42.308 0.00 0.00 0.00 1.73
3980 8435 6.775142 TCATTGTGGTAGTTGATCCTTTTTGA 59.225 34.615 0.00 0.00 0.00 2.69
4032 8487 0.737219 GGCTGTTGCTGTCATCCATC 59.263 55.000 0.00 0.00 39.59 3.51
4040 8495 2.019984 GCTGTCATCCATCCCTGAAAC 58.980 52.381 0.00 0.00 0.00 2.78
4043 8498 3.420893 TGTCATCCATCCCTGAAACAAC 58.579 45.455 0.00 0.00 0.00 3.32
4050 8505 3.503748 CCATCCCTGAAACAACAGAGTTC 59.496 47.826 0.00 0.00 39.94 3.01
4051 8506 3.924114 TCCCTGAAACAACAGAGTTCA 57.076 42.857 0.00 0.00 39.94 3.18
4060 8515 9.520204 CTGAAACAACAGAGTTCATTTAATGTT 57.480 29.630 4.77 0.00 39.94 2.71
4066 8521 9.265938 CAACAGAGTTCATTTAATGTTATGTCG 57.734 33.333 4.77 0.00 30.23 4.35
4067 8522 8.771920 ACAGAGTTCATTTAATGTTATGTCGA 57.228 30.769 4.77 0.00 0.00 4.20
4069 8524 9.694520 CAGAGTTCATTTAATGTTATGTCGAAG 57.305 33.333 4.77 0.00 0.00 3.79
4071 8526 7.472543 AGTTCATTTAATGTTATGTCGAAGGC 58.527 34.615 4.77 0.00 0.00 4.35
4087 8544 4.154015 TCGAAGGCACATCAATTACACTTG 59.846 41.667 0.00 0.00 0.00 3.16
4093 8550 6.032094 GGCACATCAATTACACTTGATTGAG 58.968 40.000 5.22 1.42 41.89 3.02
4094 8551 6.127925 GGCACATCAATTACACTTGATTGAGA 60.128 38.462 5.22 0.00 41.89 3.27
4095 8552 7.307694 GCACATCAATTACACTTGATTGAGAA 58.692 34.615 5.22 0.00 41.89 2.87
4096 8553 7.972277 GCACATCAATTACACTTGATTGAGAAT 59.028 33.333 5.22 0.00 41.89 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.895204 ACCCAAGTATATACACCAGCATTTTT 59.105 34.615 15.18 0.00 0.00 1.94
5 6 5.646692 ACCCAAGTATATACACCAGCATT 57.353 39.130 15.18 0.00 0.00 3.56
7 8 5.071250 CCTTACCCAAGTATATACACCAGCA 59.929 44.000 15.18 0.00 0.00 4.41
12 13 5.756833 GTGTGCCTTACCCAAGTATATACAC 59.243 44.000 15.18 0.00 0.00 2.90
13 14 5.452216 CGTGTGCCTTACCCAAGTATATACA 60.452 44.000 15.18 0.00 0.00 2.29
14 15 4.986659 CGTGTGCCTTACCCAAGTATATAC 59.013 45.833 4.60 4.60 0.00 1.47
16 17 3.707611 TCGTGTGCCTTACCCAAGTATAT 59.292 43.478 0.00 0.00 0.00 0.86
17 18 3.098377 TCGTGTGCCTTACCCAAGTATA 58.902 45.455 0.00 0.00 0.00 1.47
19 20 1.340088 TCGTGTGCCTTACCCAAGTA 58.660 50.000 0.00 0.00 0.00 2.24
21 22 1.821216 ATTCGTGTGCCTTACCCAAG 58.179 50.000 0.00 0.00 0.00 3.61
22 23 2.937873 GCTATTCGTGTGCCTTACCCAA 60.938 50.000 0.00 0.00 0.00 4.12
23 24 1.406341 GCTATTCGTGTGCCTTACCCA 60.406 52.381 0.00 0.00 0.00 4.51
24 25 1.296727 GCTATTCGTGTGCCTTACCC 58.703 55.000 0.00 0.00 0.00 3.69
25 26 2.018542 TGCTATTCGTGTGCCTTACC 57.981 50.000 0.00 0.00 0.00 2.85
30 31 3.000727 ACTTAGTTGCTATTCGTGTGCC 58.999 45.455 0.00 0.00 0.00 5.01
32 33 5.985781 ACAAACTTAGTTGCTATTCGTGTG 58.014 37.500 0.00 0.00 31.29 3.82
104 1423 0.536724 ACTGCGTGAGGTGCATATGA 59.463 50.000 6.97 0.00 42.32 2.15
111 1430 0.817654 TCCTATCACTGCGTGAGGTG 59.182 55.000 14.80 8.53 46.04 4.00
168 1487 6.183361 CCAATTTCCTGTCCCTTCTTCTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
169 1488 5.305386 CCAATTTCCTGTCCCTTCTTCTTTT 59.695 40.000 0.00 0.00 0.00 2.27
170 1489 4.835056 CCAATTTCCTGTCCCTTCTTCTTT 59.165 41.667 0.00 0.00 0.00 2.52
171 1490 4.411013 CCAATTTCCTGTCCCTTCTTCTT 58.589 43.478 0.00 0.00 0.00 2.52
172 1491 3.815757 GCCAATTTCCTGTCCCTTCTTCT 60.816 47.826 0.00 0.00 0.00 2.85
173 1492 2.493675 GCCAATTTCCTGTCCCTTCTTC 59.506 50.000 0.00 0.00 0.00 2.87
174 1493 2.529632 GCCAATTTCCTGTCCCTTCTT 58.470 47.619 0.00 0.00 0.00 2.52
175 1494 1.272704 GGCCAATTTCCTGTCCCTTCT 60.273 52.381 0.00 0.00 0.00 2.85
176 1495 1.186200 GGCCAATTTCCTGTCCCTTC 58.814 55.000 0.00 0.00 0.00 3.46
267 1586 2.539983 GCCCATACCAGGCCTTCTA 58.460 57.895 0.00 0.00 45.16 2.10
268 1587 3.335711 GCCCATACCAGGCCTTCT 58.664 61.111 0.00 0.00 45.16 2.85
274 1593 2.493278 CAAACTGAAAGCCCATACCAGG 59.507 50.000 0.00 0.00 37.60 4.45
278 1597 1.204704 GCCCAAACTGAAAGCCCATAC 59.795 52.381 0.00 0.00 37.60 2.39
279 1598 1.555967 GCCCAAACTGAAAGCCCATA 58.444 50.000 0.00 0.00 37.60 2.74
280 1599 1.194121 GGCCCAAACTGAAAGCCCAT 61.194 55.000 0.00 0.00 37.60 4.00
281 1600 1.836604 GGCCCAAACTGAAAGCCCA 60.837 57.895 0.00 0.00 37.60 5.36
282 1601 3.059982 GGCCCAAACTGAAAGCCC 58.940 61.111 0.00 0.00 37.60 5.19
283 1602 1.406860 TTGGGCCCAAACTGAAAGCC 61.407 55.000 35.47 0.00 43.09 4.35
284 1603 0.467804 TTTGGGCCCAAACTGAAAGC 59.532 50.000 40.46 2.80 40.51 3.51
292 1611 0.105964 TGTAGCAGTTTGGGCCCAAA 60.106 50.000 40.46 40.46 42.77 3.28
293 1612 0.539438 CTGTAGCAGTTTGGGCCCAA 60.539 55.000 34.07 34.07 0.00 4.12
294 1613 1.074775 CTGTAGCAGTTTGGGCCCA 59.925 57.895 24.45 24.45 0.00 5.36
295 1614 0.251165 TTCTGTAGCAGTTTGGGCCC 60.251 55.000 17.59 17.59 32.61 5.80
296 1615 1.616159 TTTCTGTAGCAGTTTGGGCC 58.384 50.000 0.00 0.00 32.61 5.80
297 1616 2.884639 TCTTTTCTGTAGCAGTTTGGGC 59.115 45.455 0.00 0.00 32.61 5.36
298 1617 4.022849 CCTTCTTTTCTGTAGCAGTTTGGG 60.023 45.833 0.00 0.00 32.61 4.12
299 1618 4.022849 CCCTTCTTTTCTGTAGCAGTTTGG 60.023 45.833 0.00 0.00 32.61 3.28
300 1619 4.821805 TCCCTTCTTTTCTGTAGCAGTTTG 59.178 41.667 0.00 0.00 32.61 2.93
301 1620 5.048846 TCCCTTCTTTTCTGTAGCAGTTT 57.951 39.130 0.00 0.00 32.61 2.66
302 1621 4.706842 TCCCTTCTTTTCTGTAGCAGTT 57.293 40.909 0.00 0.00 32.61 3.16
303 1622 4.505742 CCTTCCCTTCTTTTCTGTAGCAGT 60.506 45.833 0.00 0.00 32.61 4.40
315 1634 1.202940 GGTCTTGTGCCTTCCCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
329 1697 1.139853 GAGAGCCCATACCAGGTCTTG 59.860 57.143 0.00 0.00 40.76 3.02
333 1701 0.043334 ACTGAGAGCCCATACCAGGT 59.957 55.000 0.00 0.00 0.00 4.00
353 1721 2.048603 GCTGCTAGTTTGGGCCCAG 61.049 63.158 26.87 14.60 0.00 4.45
374 1742 1.596752 CACCAGCAGGCACACGTTA 60.597 57.895 0.00 0.00 39.06 3.18
376 1744 4.935495 CCACCAGCAGGCACACGT 62.935 66.667 0.00 0.00 39.06 4.49
407 1780 4.054359 ACTGAGAGCCTTTCCTCTTCTA 57.946 45.455 0.00 0.00 42.06 2.10
466 1850 4.444449 GGTCTCCTTTTATAGCCATCCGTT 60.444 45.833 0.00 0.00 0.00 4.44
502 1886 1.473434 GCCGAGAAAGGTATGAGGTGG 60.473 57.143 0.00 0.00 0.00 4.61
505 1889 1.123928 AGGCCGAGAAAGGTATGAGG 58.876 55.000 0.00 0.00 0.00 3.86
561 1945 8.117956 ACATGGCCCACATATCAGATATTAAAT 58.882 33.333 0.00 0.00 37.84 1.40
634 2083 7.611770 AGTTTAATTCTTGATTTGGTTAGGGC 58.388 34.615 0.00 0.00 0.00 5.19
663 2113 9.280174 CCAACAGGTTTACATTTTAGAGAACTA 57.720 33.333 0.00 0.00 0.00 2.24
681 2516 0.923358 TGGAGACAAACCCAACAGGT 59.077 50.000 0.00 0.00 44.97 4.00
683 2518 2.348411 ACTGGAGACAAACCCAACAG 57.652 50.000 0.00 0.00 42.06 3.16
698 2533 9.393512 AGATGAAGATCTTTTTCTATGAACTGG 57.606 33.333 9.87 0.00 35.15 4.00
713 2548 8.926374 ACTCTGAATACATGAAGATGAAGATCT 58.074 33.333 0.00 0.00 41.00 2.75
714 2549 9.545105 AACTCTGAATACATGAAGATGAAGATC 57.455 33.333 0.00 0.00 33.36 2.75
715 2550 9.902684 AAACTCTGAATACATGAAGATGAAGAT 57.097 29.630 0.00 0.00 33.36 2.40
716 2551 9.159364 CAAACTCTGAATACATGAAGATGAAGA 57.841 33.333 0.00 0.00 33.36 2.87
717 2552 7.909121 GCAAACTCTGAATACATGAAGATGAAG 59.091 37.037 0.00 0.00 33.36 3.02
718 2553 7.391275 TGCAAACTCTGAATACATGAAGATGAA 59.609 33.333 0.00 0.00 33.36 2.57
719 2554 6.880529 TGCAAACTCTGAATACATGAAGATGA 59.119 34.615 0.00 0.00 33.36 2.92
720 2555 7.080353 TGCAAACTCTGAATACATGAAGATG 57.920 36.000 0.00 0.00 35.49 2.90
739 2574 5.938125 GGATTACTTCACCTCTAGTTGCAAA 59.062 40.000 0.00 0.00 0.00 3.68
740 2575 5.488341 GGATTACTTCACCTCTAGTTGCAA 58.512 41.667 0.00 0.00 0.00 4.08
743 2578 5.105877 TGACGGATTACTTCACCTCTAGTTG 60.106 44.000 0.00 0.00 0.00 3.16
748 2583 5.046591 TGAAATGACGGATTACTTCACCTCT 60.047 40.000 0.00 0.00 0.00 3.69
749 2584 5.175859 TGAAATGACGGATTACTTCACCTC 58.824 41.667 0.00 0.00 0.00 3.85
750 2585 5.160607 TGAAATGACGGATTACTTCACCT 57.839 39.130 0.00 0.00 0.00 4.00
775 2610 9.836864 GCAGGGAATTTAAGATGGAAAAATTAT 57.163 29.630 0.00 0.00 33.99 1.28
776 2611 8.820831 TGCAGGGAATTTAAGATGGAAAAATTA 58.179 29.630 0.00 0.00 33.99 1.40
777 2612 7.688343 TGCAGGGAATTTAAGATGGAAAAATT 58.312 30.769 0.00 0.00 35.95 1.82
779 2614 6.678568 TGCAGGGAATTTAAGATGGAAAAA 57.321 33.333 0.00 0.00 0.00 1.94
780 2615 6.872585 ATGCAGGGAATTTAAGATGGAAAA 57.127 33.333 0.00 0.00 0.00 2.29
781 2616 6.440010 TCAATGCAGGGAATTTAAGATGGAAA 59.560 34.615 0.00 0.00 0.00 3.13
782 2617 5.957168 TCAATGCAGGGAATTTAAGATGGAA 59.043 36.000 0.00 0.00 0.00 3.53
784 2619 5.857471 TCAATGCAGGGAATTTAAGATGG 57.143 39.130 0.00 0.00 0.00 3.51
785 2620 8.202137 AGATTTCAATGCAGGGAATTTAAGATG 58.798 33.333 3.93 0.00 0.00 2.90
788 2623 6.982724 GGAGATTTCAATGCAGGGAATTTAAG 59.017 38.462 3.93 0.00 0.00 1.85
790 2625 5.957168 TGGAGATTTCAATGCAGGGAATTTA 59.043 36.000 3.93 0.00 0.00 1.40
792 2627 4.161001 GTGGAGATTTCAATGCAGGGAATT 59.839 41.667 3.93 1.36 0.00 2.17
793 2628 3.703052 GTGGAGATTTCAATGCAGGGAAT 59.297 43.478 3.93 0.00 0.00 3.01
794 2629 3.091545 GTGGAGATTTCAATGCAGGGAA 58.908 45.455 0.00 0.00 0.00 3.97
796 2631 2.731572 AGTGGAGATTTCAATGCAGGG 58.268 47.619 0.00 0.00 0.00 4.45
797 2632 4.774124 TCTAGTGGAGATTTCAATGCAGG 58.226 43.478 0.00 0.00 0.00 4.85
798 2633 4.815308 CCTCTAGTGGAGATTTCAATGCAG 59.185 45.833 4.84 0.00 44.45 4.41
799 2634 4.225942 ACCTCTAGTGGAGATTTCAATGCA 59.774 41.667 17.66 0.00 44.45 3.96
800 2635 4.775236 ACCTCTAGTGGAGATTTCAATGC 58.225 43.478 17.66 0.00 44.45 3.56
801 2636 6.176183 ACAACCTCTAGTGGAGATTTCAATG 58.824 40.000 17.66 4.89 44.45 2.82
802 2637 6.380079 ACAACCTCTAGTGGAGATTTCAAT 57.620 37.500 17.66 0.00 44.45 2.57
803 2638 5.825593 ACAACCTCTAGTGGAGATTTCAA 57.174 39.130 17.66 0.00 44.45 2.69
804 2639 5.513094 CCAACAACCTCTAGTGGAGATTTCA 60.513 44.000 17.66 0.00 44.45 2.69
805 2640 4.938226 CCAACAACCTCTAGTGGAGATTTC 59.062 45.833 17.66 0.00 44.45 2.17
806 2641 4.263506 CCCAACAACCTCTAGTGGAGATTT 60.264 45.833 17.66 0.00 44.45 2.17
807 2642 3.264450 CCCAACAACCTCTAGTGGAGATT 59.736 47.826 17.66 5.34 44.45 2.40
808 2643 2.840651 CCCAACAACCTCTAGTGGAGAT 59.159 50.000 17.66 2.01 44.45 2.75
809 2644 2.158219 TCCCAACAACCTCTAGTGGAGA 60.158 50.000 17.66 0.12 44.45 3.71
810 2645 2.028020 GTCCCAACAACCTCTAGTGGAG 60.028 54.545 17.66 11.28 41.51 3.86
811 2646 1.975680 GTCCCAACAACCTCTAGTGGA 59.024 52.381 17.66 0.00 0.00 4.02
812 2647 1.697432 TGTCCCAACAACCTCTAGTGG 59.303 52.381 9.34 9.34 30.70 4.00
813 2648 3.485463 TTGTCCCAACAACCTCTAGTG 57.515 47.619 0.00 0.00 40.45 2.74
961 2907 1.831736 CCCCTCTTTCTATGTGGACGT 59.168 52.381 0.00 0.00 0.00 4.34
962 2908 2.101582 CTCCCCTCTTTCTATGTGGACG 59.898 54.545 0.00 0.00 0.00 4.79
963 2909 3.375699 TCTCCCCTCTTTCTATGTGGAC 58.624 50.000 0.00 0.00 0.00 4.02
964 2910 3.776731 TCTCCCCTCTTTCTATGTGGA 57.223 47.619 0.00 0.00 0.00 4.02
965 2911 4.471386 TCTTTCTCCCCTCTTTCTATGTGG 59.529 45.833 0.00 0.00 0.00 4.17
966 2912 5.396213 CCTCTTTCTCCCCTCTTTCTATGTG 60.396 48.000 0.00 0.00 0.00 3.21
967 2913 4.719273 CCTCTTTCTCCCCTCTTTCTATGT 59.281 45.833 0.00 0.00 0.00 2.29
969 2915 4.015163 TCCCTCTTTCTCCCCTCTTTCTAT 60.015 45.833 0.00 0.00 0.00 1.98
971 2917 2.114506 TCCCTCTTTCTCCCCTCTTTCT 59.885 50.000 0.00 0.00 0.00 2.52
972 2918 2.503765 CTCCCTCTTTCTCCCCTCTTTC 59.496 54.545 0.00 0.00 0.00 2.62
973 2919 2.556766 CTCCCTCTTTCTCCCCTCTTT 58.443 52.381 0.00 0.00 0.00 2.52
975 2921 0.341609 CCTCCCTCTTTCTCCCCTCT 59.658 60.000 0.00 0.00 0.00 3.69
976 2922 0.692756 CCCTCCCTCTTTCTCCCCTC 60.693 65.000 0.00 0.00 0.00 4.30
978 2924 0.692756 CTCCCTCCCTCTTTCTCCCC 60.693 65.000 0.00 0.00 0.00 4.81
1029 2997 2.557452 GGAGGAGAGGAGAGATGGGATC 60.557 59.091 0.00 0.00 0.00 3.36
1123 3097 1.069358 AGACGCCTATAAGCCTTGCTC 59.931 52.381 0.00 0.00 38.25 4.26
1125 3099 1.202533 TGAGACGCCTATAAGCCTTGC 60.203 52.381 0.00 0.00 0.00 4.01
1131 3105 3.871594 CCCAAAACTGAGACGCCTATAAG 59.128 47.826 0.00 0.00 0.00 1.73
1136 3110 1.600916 GCCCAAAACTGAGACGCCT 60.601 57.895 0.00 0.00 0.00 5.52
1182 3157 2.213499 CTGATAAATGGAGTCCACGGC 58.787 52.381 15.86 3.24 35.80 5.68
1183 3158 2.158900 AGCTGATAAATGGAGTCCACGG 60.159 50.000 15.86 7.62 35.80 4.94
1186 3161 3.432186 CCGAAGCTGATAAATGGAGTCCA 60.432 47.826 15.88 15.88 38.19 4.02
1187 3162 3.134458 CCGAAGCTGATAAATGGAGTCC 58.866 50.000 0.73 0.73 0.00 3.85
1188 3163 3.798202 ACCGAAGCTGATAAATGGAGTC 58.202 45.455 0.00 0.00 0.00 3.36
1190 3165 6.049149 TCTTAACCGAAGCTGATAAATGGAG 58.951 40.000 0.00 0.00 34.87 3.86
1192 3167 6.867662 ATCTTAACCGAAGCTGATAAATGG 57.132 37.500 0.00 0.00 34.87 3.16
1193 3168 8.012241 GCTAATCTTAACCGAAGCTGATAAATG 58.988 37.037 0.00 0.00 34.87 2.32
1210 3185 5.499004 AACAGTGGGACAAGCTAATCTTA 57.501 39.130 0.00 0.00 44.16 2.10
1281 3258 2.614229 GCTCTTCCCTGTCAAGAACTCC 60.614 54.545 0.00 0.00 29.36 3.85
1658 3680 5.506317 GCATTATCACAGTCATTTAGGTGGC 60.506 44.000 0.00 0.00 32.29 5.01
1678 3750 7.231317 TCTGTTCACTTCAAAAATAGGAGCATT 59.769 33.333 0.00 0.00 0.00 3.56
1991 4083 3.009253 TCGTAACCATTTCTAGGGGCAAA 59.991 43.478 0.00 0.00 0.00 3.68
1993 4085 2.189676 TCGTAACCATTTCTAGGGGCA 58.810 47.619 0.00 0.00 0.00 5.36
2040 4134 2.546114 AATTCCCCCGCCGGTACAAG 62.546 60.000 1.90 0.00 0.00 3.16
2041 4135 1.270414 TAATTCCCCCGCCGGTACAA 61.270 55.000 1.90 0.00 0.00 2.41
2043 4137 1.227645 GTAATTCCCCCGCCGGTAC 60.228 63.158 1.90 0.00 0.00 3.34
2045 4139 2.689771 AGTAATTCCCCCGCCGGT 60.690 61.111 1.90 0.00 0.00 5.28
2055 4149 6.570692 TGGTTAGATGACGGAAGAGTAATTC 58.429 40.000 0.00 0.00 0.00 2.17
2060 4154 4.884668 TTTGGTTAGATGACGGAAGAGT 57.115 40.909 0.00 0.00 0.00 3.24
2199 4429 8.106462 TGGATTGGTGACTTGATTAAGACAATA 58.894 33.333 3.94 0.00 39.58 1.90
2366 4960 7.094118 CCGGTCCTAAATTTGTTCCAGAAAATA 60.094 37.037 0.00 0.00 0.00 1.40
2382 4976 3.901844 CCTTCCATATCTCCGGTCCTAAA 59.098 47.826 0.00 0.00 0.00 1.85
2439 5045 2.360475 GTGCCTCCTGAGCCAACC 60.360 66.667 0.00 0.00 0.00 3.77
2505 5117 0.756903 AAGGTTCCACGCACACTAGT 59.243 50.000 0.00 0.00 0.00 2.57
2506 5118 1.270094 TGAAGGTTCCACGCACACTAG 60.270 52.381 0.00 0.00 0.00 2.57
2588 5207 3.909732 TGGTTCTGATTGGTTGGAAGTT 58.090 40.909 0.00 0.00 0.00 2.66
2626 5488 5.118971 CACATCCCGAATGTTTTTGTTCATG 59.881 40.000 1.19 0.00 46.73 3.07
2732 5595 0.179702 GAACCTCCGGTATGAACCCC 59.820 60.000 0.00 0.00 43.54 4.95
2792 5655 1.406065 CCATCGTCATGGCCTCCTCT 61.406 60.000 3.32 0.00 43.55 3.69
2805 5668 1.826024 CTAGCCTCCTTGCCATCGT 59.174 57.895 0.00 0.00 0.00 3.73
2813 5683 1.456705 CTCCCTCGCTAGCCTCCTT 60.457 63.158 9.66 0.00 0.00 3.36
3071 6467 4.918810 AAGGTCATATTTTCGCATTCCC 57.081 40.909 0.00 0.00 0.00 3.97
3106 6502 6.352516 CACCCATTCTACTTAATGAGAGCTT 58.647 40.000 0.00 0.00 38.84 3.74
3246 7689 5.441718 ACTTAATGAGAGCTTCCCATGAA 57.558 39.130 0.00 0.00 0.00 2.57
3247 7690 5.899547 TCTACTTAATGAGAGCTTCCCATGA 59.100 40.000 0.00 0.00 0.00 3.07
3248 7691 6.166984 TCTACTTAATGAGAGCTTCCCATG 57.833 41.667 0.00 0.00 0.00 3.66
3249 7692 6.814954 TTCTACTTAATGAGAGCTTCCCAT 57.185 37.500 0.00 0.00 0.00 4.00
3250 7693 6.408548 CCATTCTACTTAATGAGAGCTTCCCA 60.409 42.308 0.00 0.00 38.84 4.37
3251 7694 5.994668 CCATTCTACTTAATGAGAGCTTCCC 59.005 44.000 0.00 0.00 38.84 3.97
3252 7695 5.994668 CCCATTCTACTTAATGAGAGCTTCC 59.005 44.000 0.00 0.00 38.84 3.46
3253 7696 6.481644 CACCCATTCTACTTAATGAGAGCTTC 59.518 42.308 0.00 0.00 38.84 3.86
3254 7697 6.352516 CACCCATTCTACTTAATGAGAGCTT 58.647 40.000 0.00 0.00 38.84 3.74
3256 7699 4.513318 GCACCCATTCTACTTAATGAGAGC 59.487 45.833 0.00 0.00 38.84 4.09
3257 7700 5.923204 AGCACCCATTCTACTTAATGAGAG 58.077 41.667 0.00 0.00 38.84 3.20
3258 7701 5.957771 AGCACCCATTCTACTTAATGAGA 57.042 39.130 0.00 0.00 38.84 3.27
3261 7704 9.736023 GAAAAATAGCACCCATTCTACTTAATG 57.264 33.333 0.00 0.00 36.74 1.90
3262 7705 9.474313 TGAAAAATAGCACCCATTCTACTTAAT 57.526 29.630 0.00 0.00 0.00 1.40
3263 7706 8.871629 TGAAAAATAGCACCCATTCTACTTAA 57.128 30.769 0.00 0.00 0.00 1.85
3264 7707 8.902806 CATGAAAAATAGCACCCATTCTACTTA 58.097 33.333 0.00 0.00 0.00 2.24
3265 7708 7.397192 ACATGAAAAATAGCACCCATTCTACTT 59.603 33.333 0.00 0.00 0.00 2.24
3266 7709 6.891908 ACATGAAAAATAGCACCCATTCTACT 59.108 34.615 0.00 0.00 0.00 2.57
3267 7710 6.974622 CACATGAAAAATAGCACCCATTCTAC 59.025 38.462 0.00 0.00 0.00 2.59
3268 7711 6.663093 ACACATGAAAAATAGCACCCATTCTA 59.337 34.615 0.00 0.00 0.00 2.10
3269 7712 5.481473 ACACATGAAAAATAGCACCCATTCT 59.519 36.000 0.00 0.00 0.00 2.40
3270 7713 5.723295 ACACATGAAAAATAGCACCCATTC 58.277 37.500 0.00 0.00 0.00 2.67
3271 7714 5.743636 ACACATGAAAAATAGCACCCATT 57.256 34.783 0.00 0.00 0.00 3.16
3272 7715 5.743636 AACACATGAAAAATAGCACCCAT 57.256 34.783 0.00 0.00 0.00 4.00
3275 7718 7.651704 ACTTACAAACACATGAAAAATAGCACC 59.348 33.333 0.00 0.00 0.00 5.01
3276 7719 8.479280 CACTTACAAACACATGAAAAATAGCAC 58.521 33.333 0.00 0.00 0.00 4.40
3278 7721 8.574196 ACACTTACAAACACATGAAAAATAGC 57.426 30.769 0.00 0.00 0.00 2.97
3279 7722 9.729023 TGACACTTACAAACACATGAAAAATAG 57.271 29.630 0.00 0.00 0.00 1.73
3280 7723 9.729023 CTGACACTTACAAACACATGAAAAATA 57.271 29.630 0.00 0.00 0.00 1.40
3281 7724 7.222611 GCTGACACTTACAAACACATGAAAAAT 59.777 33.333 0.00 0.00 0.00 1.82
3282 7725 6.529829 GCTGACACTTACAAACACATGAAAAA 59.470 34.615 0.00 0.00 0.00 1.94
3283 7726 6.033341 GCTGACACTTACAAACACATGAAAA 58.967 36.000 0.00 0.00 0.00 2.29
3287 7730 4.282068 GTGCTGACACTTACAAACACATG 58.718 43.478 0.00 0.00 43.85 3.21
3302 7745 1.070134 TCCACTGTACCTTGTGCTGAC 59.930 52.381 5.55 0.00 33.26 3.51
3303 7746 1.419381 TCCACTGTACCTTGTGCTGA 58.581 50.000 5.55 0.00 33.26 4.26
3304 7747 2.350522 GATCCACTGTACCTTGTGCTG 58.649 52.381 5.55 0.00 33.26 4.41
3305 7748 1.279271 GGATCCACTGTACCTTGTGCT 59.721 52.381 6.95 0.00 33.26 4.40
3306 7749 1.279271 AGGATCCACTGTACCTTGTGC 59.721 52.381 15.82 0.00 33.26 4.57
3307 7750 2.834549 AGAGGATCCACTGTACCTTGTG 59.165 50.000 15.82 0.00 33.66 3.33
3308 7751 2.834549 CAGAGGATCCACTGTACCTTGT 59.165 50.000 26.12 0.00 33.66 3.16
3309 7752 2.834549 ACAGAGGATCCACTGTACCTTG 59.165 50.000 34.98 15.08 43.89 3.61
3310 7753 3.191888 ACAGAGGATCCACTGTACCTT 57.808 47.619 34.98 16.29 43.89 3.50
3311 7754 2.930109 ACAGAGGATCCACTGTACCT 57.070 50.000 34.98 16.62 43.89 3.08
3312 7755 3.100671 AGAACAGAGGATCCACTGTACC 58.899 50.000 35.65 29.30 44.68 3.34
3313 7756 4.499183 CAAGAACAGAGGATCCACTGTAC 58.501 47.826 35.65 17.72 44.68 2.90
3314 7757 3.055819 GCAAGAACAGAGGATCCACTGTA 60.056 47.826 35.65 0.00 44.68 2.74
3315 7758 2.289945 GCAAGAACAGAGGATCCACTGT 60.290 50.000 31.98 31.98 46.73 3.55
3316 7759 2.027377 AGCAAGAACAGAGGATCCACTG 60.027 50.000 30.75 30.75 39.84 3.66
3317 7760 2.264455 AGCAAGAACAGAGGATCCACT 58.736 47.619 15.82 10.73 33.66 4.00
3318 7761 2.777832 AGCAAGAACAGAGGATCCAC 57.222 50.000 15.82 8.01 33.66 4.02
3319 7762 3.795688 AAAGCAAGAACAGAGGATCCA 57.204 42.857 15.82 0.00 33.66 3.41
3320 7763 3.126000 CGAAAAGCAAGAACAGAGGATCC 59.874 47.826 2.48 2.48 33.66 3.36
3321 7764 4.333633 CGAAAAGCAAGAACAGAGGATC 57.666 45.455 0.00 0.00 0.00 3.36
3336 7779 2.154389 GCATGCTCTGTTTTGCGAAAAG 59.846 45.455 11.37 1.95 0.00 2.27
3337 7780 2.126467 GCATGCTCTGTTTTGCGAAAA 58.874 42.857 11.37 0.00 0.00 2.29
3338 7781 1.602668 GGCATGCTCTGTTTTGCGAAA 60.603 47.619 18.92 0.00 35.95 3.46
3339 7782 0.039256 GGCATGCTCTGTTTTGCGAA 60.039 50.000 18.92 0.00 35.95 4.70
3340 7783 0.890542 AGGCATGCTCTGTTTTGCGA 60.891 50.000 18.92 0.00 35.95 5.10
3341 7784 0.038892 AAGGCATGCTCTGTTTTGCG 60.039 50.000 18.92 0.00 35.95 4.85
3342 7785 1.796459 CAAAGGCATGCTCTGTTTTGC 59.204 47.619 18.92 0.00 30.45 3.68
3343 7786 1.796459 GCAAAGGCATGCTCTGTTTTG 59.204 47.619 18.92 18.69 43.06 2.44
3344 7787 2.159327 GCAAAGGCATGCTCTGTTTT 57.841 45.000 18.92 8.04 43.06 2.43
3345 7788 3.900446 GCAAAGGCATGCTCTGTTT 57.100 47.368 18.92 9.53 43.06 2.83
3352 7795 1.868469 TTCAACAAGCAAAGGCATGC 58.132 45.000 9.90 9.90 42.27 4.06
3353 7796 2.739913 CCATTCAACAAGCAAAGGCATG 59.260 45.455 0.00 0.00 44.02 4.06
3354 7797 2.633967 TCCATTCAACAAGCAAAGGCAT 59.366 40.909 0.00 0.00 44.61 4.40
3355 7798 2.037901 TCCATTCAACAAGCAAAGGCA 58.962 42.857 0.00 0.00 44.61 4.75
3356 7799 2.818130 TCCATTCAACAAGCAAAGGC 57.182 45.000 0.00 0.00 41.61 4.35
3357 7800 4.279169 TCTCTTCCATTCAACAAGCAAAGG 59.721 41.667 0.00 0.00 0.00 3.11
3358 7801 5.443185 TCTCTTCCATTCAACAAGCAAAG 57.557 39.130 0.00 0.00 0.00 2.77
3359 7802 6.266103 AGAATCTCTTCCATTCAACAAGCAAA 59.734 34.615 0.00 0.00 33.34 3.68
3360 7803 5.771666 AGAATCTCTTCCATTCAACAAGCAA 59.228 36.000 0.00 0.00 33.34 3.91
3361 7804 5.319453 AGAATCTCTTCCATTCAACAAGCA 58.681 37.500 0.00 0.00 33.34 3.91
3362 7805 5.893897 AGAATCTCTTCCATTCAACAAGC 57.106 39.130 0.00 0.00 33.34 4.01
3363 7806 9.829507 AGTATAGAATCTCTTCCATTCAACAAG 57.170 33.333 0.00 0.00 33.34 3.16
3364 7807 9.605275 CAGTATAGAATCTCTTCCATTCAACAA 57.395 33.333 0.00 0.00 33.34 2.83
3365 7808 8.981659 TCAGTATAGAATCTCTTCCATTCAACA 58.018 33.333 0.00 0.00 33.34 3.33
3366 7809 9.995003 ATCAGTATAGAATCTCTTCCATTCAAC 57.005 33.333 0.00 0.00 33.34 3.18
3368 7811 9.599056 AGATCAGTATAGAATCTCTTCCATTCA 57.401 33.333 0.00 0.00 33.34 2.57
3371 7814 9.599056 TGAAGATCAGTATAGAATCTCTTCCAT 57.401 33.333 0.00 0.00 37.43 3.41
3372 7815 9.599056 ATGAAGATCAGTATAGAATCTCTTCCA 57.401 33.333 0.00 0.00 37.43 3.53
3378 7821 9.836179 ACCCTTATGAAGATCAGTATAGAATCT 57.164 33.333 0.00 0.00 0.00 2.40
3382 7825 9.742144 GAGTACCCTTATGAAGATCAGTATAGA 57.258 37.037 0.00 0.00 0.00 1.98
3383 7826 8.962679 GGAGTACCCTTATGAAGATCAGTATAG 58.037 40.741 0.00 0.00 0.00 1.31
3384 7827 8.679725 AGGAGTACCCTTATGAAGATCAGTATA 58.320 37.037 0.00 0.00 44.85 1.47
3385 7828 7.540183 AGGAGTACCCTTATGAAGATCAGTAT 58.460 38.462 0.00 0.00 44.85 2.12
3386 7829 6.923670 AGGAGTACCCTTATGAAGATCAGTA 58.076 40.000 0.00 0.00 44.85 2.74
3387 7830 5.782925 AGGAGTACCCTTATGAAGATCAGT 58.217 41.667 0.00 0.00 44.85 3.41
3388 7831 7.893302 AGATAGGAGTACCCTTATGAAGATCAG 59.107 40.741 8.03 0.00 44.85 2.90
3389 7832 7.770662 AGATAGGAGTACCCTTATGAAGATCA 58.229 38.462 8.03 0.00 44.85 2.92
3392 7835 9.756571 GATAAGATAGGAGTACCCTTATGAAGA 57.243 37.037 8.03 0.00 44.85 2.87
3404 7847 5.950023 ACCCTCGTTGATAAGATAGGAGTA 58.050 41.667 0.00 0.00 0.00 2.59
3416 7859 0.898320 CTGTCTGGACCCTCGTTGAT 59.102 55.000 0.00 0.00 0.00 2.57
3419 7862 2.584391 GCCTGTCTGGACCCTCGTT 61.584 63.158 0.00 0.00 38.35 3.85
3420 7863 2.997897 GCCTGTCTGGACCCTCGT 60.998 66.667 0.00 0.00 38.35 4.18
3421 7864 3.775654 GGCCTGTCTGGACCCTCG 61.776 72.222 0.00 0.00 38.13 4.63
3427 7870 5.544176 CCTAGATTAAATAGGCCTGTCTGGA 59.456 44.000 17.99 0.00 33.76 3.86
3428 7871 5.280215 CCCTAGATTAAATAGGCCTGTCTGG 60.280 48.000 17.99 10.37 38.83 3.86
3431 7874 5.827326 ACCCTAGATTAAATAGGCCTGTC 57.173 43.478 17.99 3.81 38.83 3.51
3432 7875 6.592207 AAACCCTAGATTAAATAGGCCTGT 57.408 37.500 17.99 5.57 38.83 4.00
3433 7876 7.898014 AAAAACCCTAGATTAAATAGGCCTG 57.102 36.000 17.99 0.00 38.83 4.85
3466 7909 9.757227 GCTTAGTTACTATTGATGATGTTCTCT 57.243 33.333 0.00 0.00 0.00 3.10
3467 7910 9.757227 AGCTTAGTTACTATTGATGATGTTCTC 57.243 33.333 0.00 0.00 0.00 2.87
3468 7911 9.757227 GAGCTTAGTTACTATTGATGATGTTCT 57.243 33.333 0.00 0.00 0.00 3.01
3469 7912 9.534565 TGAGCTTAGTTACTATTGATGATGTTC 57.465 33.333 0.00 0.00 0.00 3.18
3482 7925 9.435570 TCCCTAGATTAAATGAGCTTAGTTACT 57.564 33.333 0.00 0.00 0.00 2.24
3489 7932 8.673251 ACCATATTCCCTAGATTAAATGAGCTT 58.327 33.333 0.00 0.00 0.00 3.74
3490 7933 8.224620 ACCATATTCCCTAGATTAAATGAGCT 57.775 34.615 0.00 0.00 0.00 4.09
3586 8041 9.877178 AATACTTTTCTATGACTTGTACAGAGG 57.123 33.333 0.00 0.00 0.00 3.69
3593 8048 9.561069 ACACTTCAATACTTTTCTATGACTTGT 57.439 29.630 0.00 0.00 0.00 3.16
3594 8049 9.817365 CACACTTCAATACTTTTCTATGACTTG 57.183 33.333 0.00 0.00 0.00 3.16
3595 8050 9.561069 ACACACTTCAATACTTTTCTATGACTT 57.439 29.630 0.00 0.00 0.00 3.01
3596 8051 9.209175 GACACACTTCAATACTTTTCTATGACT 57.791 33.333 0.00 0.00 0.00 3.41
3597 8052 9.209175 AGACACACTTCAATACTTTTCTATGAC 57.791 33.333 0.00 0.00 0.00 3.06
3608 8063 8.383619 GTCATGATTACAGACACACTTCAATAC 58.616 37.037 0.00 0.00 32.68 1.89
3622 8077 7.665690 AGCTAATGTAGAGGTCATGATTACAG 58.334 38.462 0.00 0.00 0.00 2.74
3626 8081 8.427902 TGATAGCTAATGTAGAGGTCATGATT 57.572 34.615 0.00 0.00 0.00 2.57
3675 8130 4.580167 TCAGTCCAGTGGTTCAAGAATTTG 59.420 41.667 9.54 0.00 35.57 2.32
3735 8190 2.921754 GAGATTCGGGTTGTACTTCGTG 59.078 50.000 0.00 0.00 0.00 4.35
3756 8211 0.103208 GGACTGCTGGATACACCTCG 59.897 60.000 0.00 0.00 46.17 4.63
3771 8226 1.276421 CTCGACAATTGGGAGTGGACT 59.724 52.381 10.83 0.00 0.00 3.85
3825 8280 1.213296 ATTTATGCAGGGAGGACGGT 58.787 50.000 0.00 0.00 0.00 4.83
3840 8295 8.410673 TGGTTAATCTTTGGTACTGCAATTTA 57.589 30.769 0.00 0.00 0.00 1.40
3865 8320 9.994432 CGAAACTTCTTTTGCTATTCATAGATT 57.006 29.630 0.00 0.00 32.05 2.40
3873 8328 6.861065 TCAGTCGAAACTTCTTTTGCTATT 57.139 33.333 0.00 0.00 31.71 1.73
3887 8342 2.637872 ACCTTCCCTTGATCAGTCGAAA 59.362 45.455 0.00 0.00 0.00 3.46
3890 8345 3.887621 TTACCTTCCCTTGATCAGTCG 57.112 47.619 0.00 0.00 0.00 4.18
3914 8369 6.098982 AGCTGATTCTATAAGGTGCTAACACT 59.901 38.462 0.00 0.00 46.57 3.55
3915 8370 6.284459 AGCTGATTCTATAAGGTGCTAACAC 58.716 40.000 0.00 0.00 46.66 3.32
3930 8385 5.690464 ACCTCACAAATCTAGCTGATTCT 57.310 39.130 10.52 1.96 43.99 2.40
4032 8487 5.520376 AAATGAACTCTGTTGTTTCAGGG 57.480 39.130 0.00 0.00 41.28 4.45
4040 8495 9.265938 CGACATAACATTAAATGAACTCTGTTG 57.734 33.333 0.00 0.00 0.00 3.33
4043 8498 9.694520 CTTCGACATAACATTAAATGAACTCTG 57.305 33.333 0.00 0.00 0.00 3.35
4050 8505 6.550843 TGTGCCTTCGACATAACATTAAATG 58.449 36.000 0.00 0.00 0.00 2.32
4051 8506 6.751514 TGTGCCTTCGACATAACATTAAAT 57.248 33.333 0.00 0.00 0.00 1.40
4060 8515 5.293324 GTGTAATTGATGTGCCTTCGACATA 59.707 40.000 0.00 0.00 34.10 2.29
4066 8521 5.627499 TCAAGTGTAATTGATGTGCCTTC 57.373 39.130 0.00 0.00 34.31 3.46
4067 8522 6.209192 TCAATCAAGTGTAATTGATGTGCCTT 59.791 34.615 8.14 0.00 46.64 4.35
4069 8524 5.953183 TCAATCAAGTGTAATTGATGTGCC 58.047 37.500 8.14 0.00 46.64 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.