AutoCloner

Multiple sequence alignment - TraesCS7D01G362900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G362900	chr7D	100.000	2860	0	0	1426	4285	466059403	466056544	0.000000e+00	5282
1	TraesCS7D01G362900	chr7D	100.000	1173	0	0	1	1173	466060828	466059656	0.000000e+00	2167
2	TraesCS7D01G362900	chr7B	96.306	2815	80	11	1474	4285	490608100	490605307	0.000000e+00	4601
3	TraesCS7D01G362900	chr7B	94.388	1176	41	8	1	1155	490609623	490608452	0.000000e+00	1783
4	TraesCS7D01G362900	chr7B	86.909	275	22	11	3741	4004	680900895	680901166	3.240000e-76	296
5	TraesCS7D01G362900	chr7A	94.513	2114	103	7	1426	3529	533897360	533899470	0.000000e+00	3249
6	TraesCS7D01G362900	chr7A	88.980	490	27	8	704	1173	533896819	533897301	7.990000e-162	580
7	TraesCS7D01G362900	chr4D	89.266	354	28	7	3741	4087	75269368	75269018	6.580000e-118	435
8	TraesCS7D01G362900	chr5D	80.454	573	56	33	3741	4280	367256685	367256136	1.870000e-103	387
9	TraesCS7D01G362900	chr5D	82.658	444	45	21	3846	4280	367401181	367400761	8.760000e-97	364
10	TraesCS7D01G362900	chr4A	79.455	550	54	36	3741	4278	582531064	582530562	6.870000e-88	335
11	TraesCS7D01G362900	chr4A	86.545	275	23	11	3741	4004	574179146	574179417	1.510000e-74	291
12	TraesCS7D01G362900	chr5B	86.545	275	23	11	3741	4004	515195394	515195665	1.510000e-74	291
13	TraesCS7D01G362900	chr5B	78.248	331	28	22	3958	4278	515195646	515195942	5.700000e-39	172
14	TraesCS7D01G362900	chr2A	86.545	275	23	11	3741	4004	98885676	98885405	1.510000e-74	291
15	TraesCS7D01G362900	chr3A	78.212	537	48	38	3784	4278	387289548	387289039	3.260000e-71	279
16	TraesCS7D01G362900	chr1A	85.612	278	26	11	3738	4004	20438220	20438494	3.260000e-71	279
17	TraesCS7D01G362900	chr1A	85.818	275	25	11	3741	4004	26936421	26936692	3.260000e-71	279
18	TraesCS7D01G362900	chr1A	86.500	200	21	5	3893	4087	558510875	558511073	9.330000e-52	215
19	TraesCS7D01G362900	chr1A	78.816	321	24	22	3968	4278	20438485	20438771	4.400000e-40	176
20	TraesCS7D01G362900	chr1A	78.248	331	28	22	3958	4278	26936673	26936969	5.700000e-39	172
21	TraesCS7D01G362900	chr1A	93.846	65	4	0	4214	4278	558511146	558511210	9.810000e-17	99
22	TraesCS7D01G362900	chr4B	81.717	361	38	16	3929	4278	466701762	466702105	4.220000e-70	276
23	TraesCS7D01G362900	chr5A	82.663	323	32	11	3958	4278	480513689	480513389	9.140000e-67	265
24	TraesCS7D01G362900	chr6B	82.353	323	33	10	3958	4278	645340967	645340667	4.250000e-65	259
25	TraesCS7D01G362900	chr6B	80.495	323	39	11	3958	4278	333524683	333524983	4.310000e-55	226
26	TraesCS7D01G362900	chr6D	82.043	323	34	11	3958	4278	178851624	178851924	1.980000e-63	254

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G362900	chr7D	466056544	466060828	4284	True	3724.5	5282	100.0000	1	4285	2	chr7D.!!$R1	4284
1	TraesCS7D01G362900	chr7B	490605307	490609623	4316	True	3192.0	4601	95.3470	1	4285	2	chr7B.!!$R1	4284
2	TraesCS7D01G362900	chr7A	533896819	533899470	2651	False	1914.5	3249	91.7465	704	3529	2	chr7A.!!$F1	2825
3	TraesCS7D01G362900	chr5D	367256136	367256685	549	True	387.0	387	80.4540	3741	4280	1	chr5D.!!$R1	539
4	TraesCS7D01G362900	chr4A	582530562	582531064	502	True	335.0	335	79.4550	3741	4278	1	chr4A.!!$R1	537
5	TraesCS7D01G362900	chr5B	515195394	515195942	548	False	231.5	291	82.3965	3741	4278	2	chr5B.!!$F1	537
6	TraesCS7D01G362900	chr3A	387289039	387289548	509	True	279.0	279	78.2120	3784	4278	1	chr3A.!!$R1	494
7	TraesCS7D01G362900	chr1A	20438220	20438771	551	False	227.5	279	82.2140	3738	4278	2	chr1A.!!$F1	540
8	TraesCS7D01G362900	chr1A	26936421	26936969	548	False	225.5	279	82.0330	3741	4278	2	chr1A.!!$F2	537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
51	52	0.030235	GCAACTGGTTTTCGTCCCAC	59.970	55.000	0.00	4.61	F
494	502	0.747255	CTCGTACTAGCTGCCACCAT	59.253	55.000	0.00	3.55	F
1038	1058	1.153289	CCGCCACCTCCTCTTCATG	60.153	63.158	0.00	3.07	F
2360	2425	0.820226	GCAAAGAGGGGAAGATTGCC	59.180	55.000	40.25	4.52	F
2720	2785	1.059584	TGCAGGACTCTGGGTTCCAA	61.060	55.000	41.19	3.53	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1830	1895	0.253044	AATGCTCTTGCCTCCGCTAA	59.747	50.0	38.71	3.09	R
2185	2250	0.833287	CTCATTCGGTGTCATCCCCT	59.167	55.0	0.00	4.79	R
2917	2982	2.206576	ATCCAGAGACAAACCCTTGC	57.793	50.0	35.84	4.01	R
3261	3326	0.747283	CCATCAGAACCAGGAGCAGC	60.747	60.0	0.00	5.25	R
3952	4052	1.035932	GGGCTACGAGTGGACTGCTA	61.036	60.0	0.00	3.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	0.179089	CTGGATAGCTCTGCGCAACT	60.179	55.000	13.05	12.07	42.61	3.16
45	46	0.384725	CTCTGCGCAACTGGTTTTCG	60.385	55.000	13.05	0.00	0.00	3.46
46	47	1.092921	TCTGCGCAACTGGTTTTCGT	61.093	50.000	13.05	0.00	0.00	3.85
49	50	1.281656	CGCAACTGGTTTTCGTCCC	59.718	57.895	0.00	0.00	0.00	4.46
50	51	1.440938	CGCAACTGGTTTTCGTCCCA	61.441	55.000	0.00	0.00	0.00	4.37
51	52	0.030235	GCAACTGGTTTTCGTCCCAC	59.970	55.000	0.00	0.00	0.00	4.61
68	69	1.202065	CCACTTGATTGCCGATTCGTG	60.202	52.381	5.20	0.00	0.00	4.35
171	172	7.265599	TCCTTTAGGATACAGGTGAAATCAA	57.734	36.000	0.00	0.00	39.78	2.57
172	173	7.695055	TCCTTTAGGATACAGGTGAAATCAAA	58.305	34.615	0.00	0.00	39.78	2.69
174	175	7.393234	CCTTTAGGATACAGGTGAAATCAAACA	59.607	37.037	0.00	0.00	37.39	2.83
182	183	5.163416	ACAGGTGAAATCAAACAGAAAAGGG	60.163	40.000	0.00	0.00	0.00	3.95
194	195	2.290641	CAGAAAAGGGTCGTGAAAGTGG	59.709	50.000	0.00	0.00	0.00	4.00
207	208	5.818336	TCGTGAAAGTGGTGAAACTATGAAA	59.182	36.000	0.00	0.00	36.74	2.69
256	257	6.841119	ACAAAAGGAAAAAGTGATGCAAAAC	58.159	32.000	0.00	0.00	0.00	2.43
263	264	1.148310	AGTGATGCAAAACGGACTCG	58.852	50.000	0.00	0.00	43.02	4.18
296	297	3.198872	GCCGGTTTTTGATTTTTCACCA	58.801	40.909	1.90	0.00	0.00	4.17
297	298	3.623510	GCCGGTTTTTGATTTTTCACCAA	59.376	39.130	1.90	0.00	0.00	3.67
307	308	9.757227	TTTTGATTTTTCACCAACGATAATCTT	57.243	25.926	0.00	0.00	0.00	2.40
317	318	5.150683	CCAACGATAATCTTTCGCAAACAA	58.849	37.500	0.00	0.00	40.19	2.83
331	332	4.623595	TCGCAAACAAAGAAACCTTGTTTC	59.376	37.500	10.87	10.87	30.26	2.78
333	334	4.094294	GCAAACAAAGAAACCTTGTTTCCC	59.906	41.667	14.30	2.91	30.26	3.97
366	367	6.834451	TGTGTAGGTTTATTCACCTTTGGAAA	59.166	34.615	0.00	0.00	45.76	3.13
412	420	3.117888	GGAGATGGGCAACTTTCCTATCA	60.118	47.826	6.59	0.00	42.12	2.15
470	478	4.065281	CCCGTCCACACTCGTCCC	62.065	72.222	0.00	0.00	0.00	4.46
494	502	0.747255	CTCGTACTAGCTGCCACCAT	59.253	55.000	0.00	0.00	0.00	3.55
511	519	4.256920	CACCATCTTTCCTCTTGTCGATT	58.743	43.478	0.00	0.00	0.00	3.34
524	532	4.444388	TCTTGTCGATTCAAGTCACTTTCG	59.556	41.667	13.61	4.06	43.44	3.46
553	564	3.364764	CGACCCGAGGAGATAACGAATAC	60.365	52.174	0.00	0.00	0.00	1.89
632	643	1.938585	TAGATCCATCCCGACCCATC	58.061	55.000	0.00	0.00	0.00	3.51
658	669	5.362430	ACAACACCATCCTAGAGAGAGATTC	59.638	44.000	0.00	0.00	0.00	2.52
697	708	6.772605	AGGGTTTGTTAACTTTATCCGTACT	58.227	36.000	7.22	0.00	34.59	2.73
1038	1058	1.153289	CCGCCACCTCCTCTTCATG	60.153	63.158	0.00	0.00	0.00	3.07
1074	1094	1.696884	CCTAGCTTCATCCCCTTCTCC	59.303	57.143	0.00	0.00	0.00	3.71
1077	1097	2.212420	AGCTTCATCCCCTTCTCCATT	58.788	47.619	0.00	0.00	0.00	3.16
1830	1895	2.121963	TGTGCAAGGAGGGGGAGT	60.122	61.111	0.00	0.00	0.00	3.85
2090	2155	3.710677	AGATGAAGAGGGAAGGAGTGATG	59.289	47.826	0.00	0.00	0.00	3.07
2120	2185	9.780186	AATATAAGGACTTATAGCACCTTTGTC	57.220	33.333	14.87	0.00	40.22	3.18
2185	2250	4.796946	GCTGTTTGCACAAATGAGGATCAA	60.797	41.667	0.00	0.00	45.94	2.57
2243	2308	2.100197	GTTGATGGGACCTTTAAGGCC	58.900	52.381	11.45	12.74	39.63	5.19
2360	2425	0.820226	GCAAAGAGGGGAAGATTGCC	59.180	55.000	0.00	0.00	40.25	4.52
2665	2730	5.990120	ATGGATGCTTGCTTTAAAGAAGT	57.010	34.783	19.48	5.17	0.00	3.01
2720	2785	1.059584	TGCAGGACTCTGGGTTCCAA	61.060	55.000	0.00	0.00	41.19	3.53
2917	2982	2.671914	CGTTGTTGGATGAAATGGCTGG	60.672	50.000	0.00	0.00	0.00	4.85
2948	3013	7.307811	GGTTTGTCTCTGGATAAAGTTGTGTAC	60.308	40.741	0.00	0.00	34.20	2.90
3261	3326	4.335416	ACCCTCTTGTACAATTGGTGATG	58.665	43.478	17.99	9.69	0.00	3.07
3314	3379	4.579869	CATCTGCTTGTAAACAGGTAGGT	58.420	43.478	9.74	0.98	36.58	3.08
3463	3538	1.338973	AGACTAGTCACGAAACCGCAA	59.661	47.619	24.44	0.00	0.00	4.85
3537	3612	3.600388	GTCCCAACAGACATAAGGACTG	58.400	50.000	0.00	0.00	40.51	3.51
3538	3613	3.260884	GTCCCAACAGACATAAGGACTGA	59.739	47.826	0.00	0.00	40.51	3.41
3539	3614	3.515502	TCCCAACAGACATAAGGACTGAG	59.484	47.826	0.00	0.00	35.85	3.35
3540	3615	3.515502	CCCAACAGACATAAGGACTGAGA	59.484	47.826	0.00	0.00	35.85	3.27
3541	3616	4.020218	CCCAACAGACATAAGGACTGAGAA	60.020	45.833	0.00	0.00	35.85	2.87
3542	3617	5.174395	CCAACAGACATAAGGACTGAGAAG	58.826	45.833	0.00	0.00	35.85	2.85
3543	3618	5.174395	CAACAGACATAAGGACTGAGAAGG	58.826	45.833	0.00	0.00	35.85	3.46
3544	3619	4.678256	ACAGACATAAGGACTGAGAAGGA	58.322	43.478	0.00	0.00	35.85	3.36
3545	3620	5.087323	ACAGACATAAGGACTGAGAAGGAA	58.913	41.667	0.00	0.00	35.85	3.36
3546	3621	5.046950	ACAGACATAAGGACTGAGAAGGAAC	60.047	44.000	0.00	0.00	35.85	3.62
3547	3622	5.186797	CAGACATAAGGACTGAGAAGGAACT	59.813	44.000	0.00	0.00	35.03	3.01
3553	3628	2.027653	GGACTGAGAAGGAACTCCCAAG	60.028	54.545	0.00	0.00	38.49	3.61
3554	3629	2.635427	GACTGAGAAGGAACTCCCAAGT	59.365	50.000	0.00	0.00	38.49	3.16
3585	3660	3.898741	GCTCCATAGGTAAGGTAAGCTCT	59.101	47.826	0.00	0.00	0.00	4.09
3614	3689	9.071276	ACATATTGCTTCCTTTCTGGTATATTG	57.929	33.333	0.00	0.00	37.07	1.90
3621	3696	5.565509	TCCTTTCTGGTATATTGTGTGCAA	58.434	37.500	0.00	0.00	36.70	4.08
3622	3697	6.007076	TCCTTTCTGGTATATTGTGTGCAAA	58.993	36.000	0.00	0.00	36.23	3.68
3623	3698	6.072175	TCCTTTCTGGTATATTGTGTGCAAAC	60.072	38.462	0.00	0.00	36.23	2.93
3624	3699	6.294453	CCTTTCTGGTATATTGTGTGCAAACA	60.294	38.462	5.33	5.33	38.21	2.83
3708	3783	7.090808	TGTTTCTACCAATATATGCTAGAGCG	58.909	38.462	0.00	0.00	45.83	5.03
3731	3806	7.064134	AGCGTATTTGATAAGATTTGTGTTCGA	59.936	33.333	0.00	0.00	0.00	3.71
3757	3832	9.409918	AGTAATAGACTAAGAAGCACAGATACA	57.590	33.333	0.00	0.00	36.27	2.29
3773	3848	1.830279	TACAAGGACGGAGACACGAT	58.170	50.000	0.00	0.00	37.61	3.73
3814	3889	3.367498	CGGGATACGGCATTTTCCAAAAA	60.367	43.478	0.00	0.00	39.42	1.94
3834	3909	1.399714	ACAGCCATTCGAGGATACGA	58.600	50.000	0.00	0.00	46.39	3.43
4087	4227	3.127533	CCCTTTTCTCCAGCCGCG	61.128	66.667	0.00	0.00	0.00	6.46
4128	4268	1.214367	GAGAAGAAACGACAACGCCA	58.786	50.000	0.00	0.00	43.96	5.69
4137	4277	0.233590	CGACAACGCCACAAAATCGA	59.766	50.000	0.00	0.00	0.00	3.59
4154	4310	1.001641	GACAGCTTCCAGCACCCAT	60.002	57.895	0.00	0.00	45.56	4.00
4155	4311	1.001641	ACAGCTTCCAGCACCCATC	60.002	57.895	0.00	0.00	45.56	3.51
4184	4357	1.009829	CCCAATTCTTCTTCCTCGCG	58.990	55.000	0.00	0.00	0.00	5.87
4230	4404	2.188207	GCCCGGAGCTTCTTCCTC	59.812	66.667	0.73	0.00	38.99	3.71
4236	4410	1.596895	GGAGCTTCTTCCTCGTCGGT	61.597	60.000	0.00	0.00	34.27	4.69
4281	4455	2.436417	CAAGATTTCCTTCCTTGGCGA	58.564	47.619	0.00	0.00	35.05	5.54
4282	4456	2.115343	AGATTTCCTTCCTTGGCGAC	57.885	50.000	0.00	0.00	0.00	5.19
4283	4457	1.095600	GATTTCCTTCCTTGGCGACC	58.904	55.000	0.00	0.00	0.00	4.79
4284	4458	0.404040	ATTTCCTTCCTTGGCGACCA	59.596	50.000	0.00	0.00	0.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	2.621055	CAATCAAGTGGGACGAAAACCA	59.379	45.455	0.00	0.00	0.00	3.67
45	46	1.401905	GAATCGGCAATCAAGTGGGAC	59.598	52.381	0.00	0.00	0.00	4.46
46	47	1.750193	GAATCGGCAATCAAGTGGGA	58.250	50.000	0.00	0.00	0.00	4.37
49	50	1.464608	ACACGAATCGGCAATCAAGTG	59.535	47.619	7.80	0.00	34.85	3.16
50	51	1.464608	CACACGAATCGGCAATCAAGT	59.535	47.619	7.80	0.00	0.00	3.16
51	52	1.202065	CCACACGAATCGGCAATCAAG	60.202	52.381	7.80	0.00	0.00	3.02
68	69	4.127566	TGGCGAGTTAATAACCTACCAC	57.872	45.455	0.00	0.00	0.00	4.16
132	133	5.066593	CCTAAAGGACAAGGATATTGGAGC	58.933	45.833	0.00	0.00	37.39	4.70
158	159	5.163416	CCCTTTTCTGTTTGATTTCACCTGT	60.163	40.000	0.00	0.00	0.00	4.00
171	172	3.377172	CACTTTCACGACCCTTTTCTGTT	59.623	43.478	0.00	0.00	0.00	3.16
172	173	2.943033	CACTTTCACGACCCTTTTCTGT	59.057	45.455	0.00	0.00	0.00	3.41
174	175	2.092592	ACCACTTTCACGACCCTTTTCT	60.093	45.455	0.00	0.00	0.00	2.52
182	183	4.748102	TCATAGTTTCACCACTTTCACGAC	59.252	41.667	0.00	0.00	0.00	4.34
256	257	1.599797	AAAACCCTTGGCGAGTCCG	60.600	57.895	0.12	0.00	37.80	4.79
263	264	2.318519	AAACCGGCAAAACCCTTGGC	62.319	55.000	0.00	1.22	41.00	4.52
296	297	6.664515	TCTTTGTTTGCGAAAGATTATCGTT	58.335	32.000	0.00	0.00	42.15	3.85
297	298	6.236017	TCTTTGTTTGCGAAAGATTATCGT	57.764	33.333	0.00	0.00	42.15	3.73
307	308	4.181309	ACAAGGTTTCTTTGTTTGCGAA	57.819	36.364	0.00	0.00	0.00	4.70
317	318	5.516044	ACAAGTAGGGAAACAAGGTTTCTT	58.484	37.500	18.14	11.23	0.00	2.52
333	334	7.803724	GGTGAATAAACCTACACAACAAGTAG	58.196	38.462	0.00	0.00	38.89	2.57
366	367	6.546034	CCTCGGGTCAATATGGTTTTAATTCT	59.454	38.462	0.00	0.00	0.00	2.40
412	420	4.255833	TGCGCTTGATGAAATTCCTTTT	57.744	36.364	9.73	0.00	0.00	2.27
470	478	1.941734	GCAGCTAGTACGAGCAGCG	60.942	63.158	24.82	15.82	43.75	5.18
494	502	5.215252	ACTTGAATCGACAAGAGGAAAGA	57.785	39.130	19.35	0.00	46.85	2.52
524	532	3.934391	CTCCTCGGGTCGCCAACAC	62.934	68.421	0.00	0.00	0.00	3.32
553	564	0.457851	TTTGCGGTTTGAGGGTGTTG	59.542	50.000	0.00	0.00	0.00	3.33
632	643	3.017442	TCTCTCTAGGATGGTGTTGTCG	58.983	50.000	0.00	0.00	0.00	4.35
658	669	6.399639	ACAAACCCTAACATTACAAGTTGG	57.600	37.500	7.96	0.00	0.00	3.77
740	751	2.930040	GCATCTCGATCCGACTTCAAAA	59.070	45.455	0.00	0.00	0.00	2.44
864	883	3.003378	GGGGTCATTCGCTTATACTTTGC	59.997	47.826	0.00	0.00	0.00	3.68
882	901	0.033366	GTTGCGCTTCATTTTGGGGT	59.967	50.000	9.73	0.00	0.00	4.95
940	959	4.122670	CCATGGAGGGGAGGGGGA	62.123	72.222	5.56	0.00	0.00	4.81
1038	1058	0.749454	TAGGGTTCCGGCGAGAGTAC	60.749	60.000	9.30	0.00	0.00	2.73
1830	1895	0.253044	AATGCTCTTGCCTCCGCTAA	59.747	50.000	0.00	0.00	38.71	3.09
2090	2155	8.080363	AGGTGCTATAAGTCCTTATATTAGCC	57.920	38.462	13.69	10.62	37.38	3.93
2171	2236	3.528905	TCATCCCCTTGATCCTCATTTGT	59.471	43.478	0.00	0.00	0.00	2.83
2185	2250	0.833287	CTCATTCGGTGTCATCCCCT	59.167	55.000	0.00	0.00	0.00	4.79
2252	2317	6.349243	TCAATCAAAACAAAGGCATCATCT	57.651	33.333	0.00	0.00	0.00	2.90
2360	2425	2.351726	CCTAAAAACATCCTCCGCTTCG	59.648	50.000	0.00	0.00	0.00	3.79
2411	2476	8.198778	TGAATTAGTGTAGTGTACAACAACTCA	58.801	33.333	0.00	0.00	40.93	3.41
2665	2730	3.347216	GCAATGGCCTCTGACTCTTTTA	58.653	45.455	3.32	0.00	0.00	1.52
2720	2785	7.213216	TGCACAATATGTCACAACATTAAGT	57.787	32.000	0.00	0.00	43.74	2.24
2917	2982	2.206576	ATCCAGAGACAAACCCTTGC	57.793	50.000	0.00	0.00	35.84	4.01
2948	3013	4.594920	AGGTACCCATCCATAAGAGATGTG	59.405	45.833	8.74	0.00	39.62	3.21
3261	3326	0.747283	CCATCAGAACCAGGAGCAGC	60.747	60.000	0.00	0.00	0.00	5.25
3463	3538	5.867330	TGGTTTCTCAAATTTGGCATCAAT	58.133	33.333	17.90	0.00	32.28	2.57
3537	3612	4.461198	TCAAAACTTGGGAGTTCCTTCTC	58.539	43.478	0.00	0.00	45.18	2.87
3538	3613	4.519906	TCAAAACTTGGGAGTTCCTTCT	57.480	40.909	0.00	0.00	45.18	2.85
3539	3614	5.592104	TTTCAAAACTTGGGAGTTCCTTC	57.408	39.130	0.00	0.00	45.18	3.46
3540	3615	5.684813	GCATTTCAAAACTTGGGAGTTCCTT	60.685	40.000	0.00	0.00	45.18	3.36
3541	3616	4.202253	GCATTTCAAAACTTGGGAGTTCCT	60.202	41.667	0.00	0.00	45.18	3.36
3542	3617	4.058124	GCATTTCAAAACTTGGGAGTTCC	58.942	43.478	0.00	0.00	45.18	3.62
3543	3618	4.948847	AGCATTTCAAAACTTGGGAGTTC	58.051	39.130	0.00	0.00	45.18	3.01
3545	3620	3.321968	GGAGCATTTCAAAACTTGGGAGT	59.678	43.478	0.00	0.00	37.87	3.85
3546	3621	3.321682	TGGAGCATTTCAAAACTTGGGAG	59.678	43.478	0.00	0.00	0.00	4.30
3547	3622	3.303938	TGGAGCATTTCAAAACTTGGGA	58.696	40.909	0.00	0.00	0.00	4.37
3553	3628	6.152831	ACCTTACCTATGGAGCATTTCAAAAC	59.847	38.462	0.00	0.00	0.00	2.43
3554	3629	6.252995	ACCTTACCTATGGAGCATTTCAAAA	58.747	36.000	0.00	0.00	0.00	2.44
3624	3699	7.201600	GGAAAAATGCACACAACAAAGTAATGT	60.202	33.333	0.00	0.00	34.24	2.71
3635	3710	3.640967	AGGCTAAGGAAAAATGCACACAA	59.359	39.130	0.00	0.00	0.00	3.33
3706	3781	7.177407	TCGAACACAAATCTTATCAAATACGC	58.823	34.615	0.00	0.00	0.00	4.42
3731	3806	9.409918	TGTATCTGTGCTTCTTAGTCTATTACT	57.590	33.333	0.00	0.00	42.62	2.24
3757	3832	1.475403	ATCATCGTGTCTCCGTCCTT	58.525	50.000	0.00	0.00	0.00	3.36
3758	3833	1.948145	GTATCATCGTGTCTCCGTCCT	59.052	52.381	0.00	0.00	0.00	3.85
3773	3848	1.469703	CGTATCCCCGTATGCGTATCA	59.530	52.381	1.69	0.00	36.15	2.15
3814	3889	1.754803	TCGTATCCTCGAATGGCTGTT	59.245	47.619	0.00	0.00	36.89	3.16
3826	3901	9.765295	AAATACTTATATACCCTGTCGTATCCT	57.235	33.333	0.00	0.00	31.42	3.24
3952	4052	1.035932	GGGCTACGAGTGGACTGCTA	61.036	60.000	0.00	0.00	0.00	3.49
4100	4240	3.637229	TGTCGTTTCTTCTCCTCTCTTGT	59.363	43.478	0.00	0.00	0.00	3.16
4154	4310	1.673767	AGAATTGGGCAGGGAGAAGA	58.326	50.000	0.00	0.00	0.00	2.87
4155	4311	2.025510	AGAAGAATTGGGCAGGGAGAAG	60.026	50.000	0.00	0.00	0.00	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.