Multiple sequence alignment - TraesCS7D01G362400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G362400 chr7D 100.000 2231 0 0 1 2231 465602777 465600547 0.000000e+00 4120.0
1 TraesCS7D01G362400 chr7D 85.912 433 37 9 1680 2094 546453872 546454298 7.310000e-120 440.0
2 TraesCS7D01G362400 chr7D 82.480 508 41 23 1735 2218 546455793 546456276 3.450000e-108 401.0
3 TraesCS7D01G362400 chr7D 80.435 460 48 23 1680 2115 615310377 615309936 1.660000e-81 313.0
4 TraesCS7D01G362400 chr7D 89.888 89 9 0 1596 1684 514383479 514383391 5.030000e-22 115.0
5 TraesCS7D01G362400 chr7A 95.977 348 10 2 586 930 534002748 534003094 1.500000e-156 562.0
6 TraesCS7D01G362400 chr7A 96.928 293 9 0 969 1261 534003100 534003392 1.990000e-135 492.0
7 TraesCS7D01G362400 chr7A 86.337 344 28 6 1256 1580 534003795 534004138 7.580000e-95 357.0
8 TraesCS7D01G362400 chr7A 88.745 231 19 4 1680 1907 655946224 655945998 2.180000e-70 276.0
9 TraesCS7D01G362400 chr7A 90.000 200 18 1 1680 1879 7248205 7248008 7.900000e-65 257.0
10 TraesCS7D01G362400 chr7A 91.176 68 6 0 488 555 534002682 534002749 2.360000e-15 93.5
11 TraesCS7D01G362400 chr6D 86.444 450 29 17 1 444 404615018 404614595 4.340000e-127 464.0
12 TraesCS7D01G362400 chr6D 91.960 199 14 2 1 199 132059505 132059701 6.070000e-71 278.0
13 TraesCS7D01G362400 chr7B 87.900 281 22 5 708 978 490352884 490352606 9.940000e-84 320.0
14 TraesCS7D01G362400 chr7B 91.262 103 6 3 1581 1681 374713688 374713587 1.070000e-28 137.0
15 TraesCS7D01G362400 chr4B 87.500 248 25 4 1 243 385644105 385643859 4.690000e-72 281.0
16 TraesCS7D01G362400 chr2B 89.604 202 19 1 1680 1879 165893887 165894088 2.840000e-64 255.0
17 TraesCS7D01G362400 chrUn 89.500 200 19 1 1680 1879 16269456 16269653 3.680000e-63 252.0
18 TraesCS7D01G362400 chrUn 89.000 200 20 1 1680 1879 16300594 16300791 1.710000e-61 246.0
19 TraesCS7D01G362400 chrUn 89.000 200 20 1 1680 1879 290205298 290205101 1.710000e-61 246.0
20 TraesCS7D01G362400 chrUn 100.000 43 0 0 1640 1682 269775293 269775251 1.840000e-11 80.5
21 TraesCS7D01G362400 chrUn 100.000 43 0 0 1640 1682 269783666 269783624 1.840000e-11 80.5
22 TraesCS7D01G362400 chr1B 89.500 200 19 1 1680 1879 607148671 607148868 3.680000e-63 252.0
23 TraesCS7D01G362400 chr1B 83.505 97 11 4 385 477 112353971 112354066 3.950000e-13 86.1
24 TraesCS7D01G362400 chr6A 82.041 245 30 8 253 492 90210511 90210746 1.750000e-46 196.0
25 TraesCS7D01G362400 chr1D 89.655 58 3 3 434 489 74335657 74335601 1.110000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G362400 chr7D 465600547 465602777 2230 True 4120.000 4120 100.0000 1 2231 1 chr7D.!!$R1 2230
1 TraesCS7D01G362400 chr7D 546453872 546456276 2404 False 420.500 440 84.1960 1680 2218 2 chr7D.!!$F1 538
2 TraesCS7D01G362400 chr7A 534002682 534004138 1456 False 376.125 562 92.6045 488 1580 4 chr7A.!!$F1 1092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.037232 GAGGTGGCGCACTTAAGAGT 60.037 55.0 10.83 0.0 36.25 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 4421 0.107312 CAAGATCAGGACCTGGGCTG 60.107 60.0 21.56 9.97 31.51 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.276397 GAAAACTCACAACATTTTGAAATTTGG 57.724 29.630 0.00 0.00 36.48 3.28
58 59 7.920160 AACTCACAACATTTTGAAATTTGGT 57.080 28.000 0.00 0.00 36.48 3.67
59 60 7.920160 ACTCACAACATTTTGAAATTTGGTT 57.080 28.000 0.00 0.00 36.48 3.67
60 61 7.973601 ACTCACAACATTTTGAAATTTGGTTC 58.026 30.769 0.00 0.00 36.48 3.62
61 62 7.823799 ACTCACAACATTTTGAAATTTGGTTCT 59.176 29.630 0.00 0.00 36.48 3.01
62 63 8.558973 TCACAACATTTTGAAATTTGGTTCTT 57.441 26.923 0.00 0.00 36.48 2.52
63 64 9.007901 TCACAACATTTTGAAATTTGGTTCTTT 57.992 25.926 0.00 0.00 36.48 2.52
64 65 9.623350 CACAACATTTTGAAATTTGGTTCTTTT 57.377 25.926 0.00 0.00 36.48 2.27
65 66 9.623350 ACAACATTTTGAAATTTGGTTCTTTTG 57.377 25.926 0.00 0.00 36.48 2.44
66 67 9.837525 CAACATTTTGAAATTTGGTTCTTTTGA 57.162 25.926 0.00 0.00 34.24 2.69
73 74 8.798859 TGAAATTTGGTTCTTTTGAAAATCCA 57.201 26.923 0.00 0.00 40.53 3.41
74 75 8.891720 TGAAATTTGGTTCTTTTGAAAATCCAG 58.108 29.630 0.00 0.00 40.53 3.86
75 76 9.108284 GAAATTTGGTTCTTTTGAAAATCCAGA 57.892 29.630 0.00 0.00 40.53 3.86
76 77 9.460019 AAATTTGGTTCTTTTGAAAATCCAGAA 57.540 25.926 0.00 0.00 40.53 3.02
77 78 9.631257 AATTTGGTTCTTTTGAAAATCCAGAAT 57.369 25.926 0.00 2.63 40.53 2.40
78 79 9.631257 ATTTGGTTCTTTTGAAAATCCAGAATT 57.369 25.926 0.00 0.00 40.53 2.17
79 80 9.460019 TTTGGTTCTTTTGAAAATCCAGAATTT 57.540 25.926 0.00 0.00 40.53 1.82
80 81 8.661352 TGGTTCTTTTGAAAATCCAGAATTTC 57.339 30.769 1.94 1.94 40.53 2.17
81 82 8.263640 TGGTTCTTTTGAAAATCCAGAATTTCA 58.736 29.630 6.76 6.76 42.17 2.69
82 83 9.276590 GGTTCTTTTGAAAATCCAGAATTTCAT 57.723 29.630 10.77 0.00 43.04 2.57
152 153 8.742554 AGCATAAAAACGAAATAGAAAACAGG 57.257 30.769 0.00 0.00 0.00 4.00
153 154 7.812669 AGCATAAAAACGAAATAGAAAACAGGG 59.187 33.333 0.00 0.00 0.00 4.45
154 155 7.062956 GCATAAAAACGAAATAGAAAACAGGGG 59.937 37.037 0.00 0.00 0.00 4.79
155 156 5.462530 AAAACGAAATAGAAAACAGGGGG 57.537 39.130 0.00 0.00 0.00 5.40
156 157 2.443416 ACGAAATAGAAAACAGGGGGC 58.557 47.619 0.00 0.00 0.00 5.80
157 158 2.041216 ACGAAATAGAAAACAGGGGGCT 59.959 45.455 0.00 0.00 0.00 5.19
158 159 2.683362 CGAAATAGAAAACAGGGGGCTC 59.317 50.000 0.00 0.00 0.00 4.70
159 160 2.828661 AATAGAAAACAGGGGGCTCC 57.171 50.000 0.00 0.00 0.00 4.70
160 161 1.681229 ATAGAAAACAGGGGGCTCCA 58.319 50.000 5.99 0.00 38.24 3.86
161 162 0.696501 TAGAAAACAGGGGGCTCCAC 59.303 55.000 5.99 0.00 38.24 4.02
162 163 1.971695 GAAAACAGGGGGCTCCACG 60.972 63.158 5.99 0.00 38.24 4.94
163 164 2.406002 GAAAACAGGGGGCTCCACGA 62.406 60.000 5.99 0.00 38.24 4.35
164 165 2.692273 AAAACAGGGGGCTCCACGAC 62.692 60.000 5.99 0.00 38.24 4.34
167 168 4.741239 AGGGGGCTCCACGACCAT 62.741 66.667 5.99 0.00 45.67 3.55
168 169 4.489771 GGGGGCTCCACGACCATG 62.490 72.222 4.16 0.00 45.67 3.66
169 170 4.489771 GGGGCTCCACGACCATGG 62.490 72.222 11.19 11.19 45.67 3.66
170 171 4.489771 GGGCTCCACGACCATGGG 62.490 72.222 18.09 0.85 42.15 4.00
173 174 3.716195 CTCCACGACCATGGGCCA 61.716 66.667 18.09 9.61 40.49 5.36
174 175 3.687321 CTCCACGACCATGGGCCAG 62.687 68.421 18.09 6.84 40.49 4.85
188 189 3.202001 CCAGCCCATTACCGCGTG 61.202 66.667 4.92 0.00 0.00 5.34
189 190 3.876198 CAGCCCATTACCGCGTGC 61.876 66.667 4.92 0.00 0.00 5.34
190 191 4.096003 AGCCCATTACCGCGTGCT 62.096 61.111 4.92 0.00 0.00 4.40
191 192 3.876198 GCCCATTACCGCGTGCTG 61.876 66.667 4.92 0.00 0.00 4.41
192 193 2.435938 CCCATTACCGCGTGCTGT 60.436 61.111 4.92 0.00 0.00 4.40
193 194 1.153529 CCCATTACCGCGTGCTGTA 60.154 57.895 4.92 0.00 0.00 2.74
194 195 1.151777 CCCATTACCGCGTGCTGTAG 61.152 60.000 4.92 0.00 0.00 2.74
195 196 1.151777 CCATTACCGCGTGCTGTAGG 61.152 60.000 4.92 0.00 0.00 3.18
196 197 0.179121 CATTACCGCGTGCTGTAGGA 60.179 55.000 4.92 0.00 0.00 2.94
197 198 0.102481 ATTACCGCGTGCTGTAGGAG 59.898 55.000 4.92 0.00 0.00 3.69
198 199 1.940883 TTACCGCGTGCTGTAGGAGG 61.941 60.000 4.92 6.67 39.63 4.30
199 200 3.760035 CCGCGTGCTGTAGGAGGT 61.760 66.667 4.92 0.00 30.62 3.85
200 201 2.507102 CGCGTGCTGTAGGAGGTG 60.507 66.667 0.00 0.00 0.00 4.00
201 202 2.125512 GCGTGCTGTAGGAGGTGG 60.126 66.667 0.00 0.00 0.00 4.61
202 203 2.125512 CGTGCTGTAGGAGGTGGC 60.126 66.667 0.00 0.00 0.00 5.01
203 204 2.125512 GTGCTGTAGGAGGTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
204 205 4.082523 TGCTGTAGGAGGTGGCGC 62.083 66.667 0.00 0.00 0.00 6.53
205 206 4.082523 GCTGTAGGAGGTGGCGCA 62.083 66.667 10.83 0.00 0.00 6.09
206 207 2.125512 CTGTAGGAGGTGGCGCAC 60.126 66.667 10.83 5.50 0.00 5.34
207 208 2.603473 TGTAGGAGGTGGCGCACT 60.603 61.111 10.83 3.48 34.40 4.40
208 209 2.172483 CTGTAGGAGGTGGCGCACTT 62.172 60.000 10.83 1.43 34.40 3.16
209 210 0.901114 TGTAGGAGGTGGCGCACTTA 60.901 55.000 10.83 0.00 34.40 2.24
210 211 0.248289 GTAGGAGGTGGCGCACTTAA 59.752 55.000 10.83 0.00 34.40 1.85
211 212 0.535335 TAGGAGGTGGCGCACTTAAG 59.465 55.000 10.83 0.00 34.40 1.85
212 213 1.192146 AGGAGGTGGCGCACTTAAGA 61.192 55.000 10.83 0.00 34.40 2.10
213 214 0.741221 GGAGGTGGCGCACTTAAGAG 60.741 60.000 10.83 1.84 34.40 2.85
214 215 0.037232 GAGGTGGCGCACTTAAGAGT 60.037 55.000 10.83 0.00 36.25 3.24
225 226 3.739401 ACTTAAGAGTGGAAATGGGGG 57.261 47.619 10.09 0.00 33.99 5.40
226 227 3.265489 ACTTAAGAGTGGAAATGGGGGA 58.735 45.455 10.09 0.00 33.99 4.81
227 228 3.267031 ACTTAAGAGTGGAAATGGGGGAG 59.733 47.826 10.09 0.00 33.99 4.30
228 229 2.059756 AAGAGTGGAAATGGGGGAGA 57.940 50.000 0.00 0.00 0.00 3.71
229 230 2.059756 AGAGTGGAAATGGGGGAGAA 57.940 50.000 0.00 0.00 0.00 2.87
230 231 2.358258 AGAGTGGAAATGGGGGAGAAA 58.642 47.619 0.00 0.00 0.00 2.52
231 232 2.721906 AGAGTGGAAATGGGGGAGAAAA 59.278 45.455 0.00 0.00 0.00 2.29
232 233 3.337909 AGAGTGGAAATGGGGGAGAAAAT 59.662 43.478 0.00 0.00 0.00 1.82
233 234 3.444029 AGTGGAAATGGGGGAGAAAATG 58.556 45.455 0.00 0.00 0.00 2.32
234 235 2.501316 GTGGAAATGGGGGAGAAAATGG 59.499 50.000 0.00 0.00 0.00 3.16
235 236 2.118679 GGAAATGGGGGAGAAAATGGG 58.881 52.381 0.00 0.00 0.00 4.00
236 237 2.292851 GGAAATGGGGGAGAAAATGGGA 60.293 50.000 0.00 0.00 0.00 4.37
237 238 2.550277 AATGGGGGAGAAAATGGGAC 57.450 50.000 0.00 0.00 0.00 4.46
249 250 2.927856 TGGGACAGCACCACGGAT 60.928 61.111 0.00 0.00 31.83 4.18
250 251 2.125106 GGGACAGCACCACGGATC 60.125 66.667 0.00 0.00 0.00 3.36
251 252 2.662596 GGACAGCACCACGGATCA 59.337 61.111 0.00 0.00 0.00 2.92
252 253 1.003839 GGACAGCACCACGGATCAA 60.004 57.895 0.00 0.00 0.00 2.57
253 254 0.392998 GGACAGCACCACGGATCAAT 60.393 55.000 0.00 0.00 0.00 2.57
254 255 1.009829 GACAGCACCACGGATCAATC 58.990 55.000 0.00 0.00 0.00 2.67
255 256 0.392998 ACAGCACCACGGATCAATCC 60.393 55.000 0.00 0.00 43.65 3.01
256 257 1.097547 CAGCACCACGGATCAATCCC 61.098 60.000 3.45 0.00 44.24 3.85
257 258 1.224592 GCACCACGGATCAATCCCT 59.775 57.895 3.45 0.00 44.24 4.20
258 259 0.468226 GCACCACGGATCAATCCCTA 59.532 55.000 3.45 0.00 44.24 3.53
259 260 1.541233 GCACCACGGATCAATCCCTAG 60.541 57.143 3.45 0.00 44.24 3.02
260 261 1.762957 CACCACGGATCAATCCCTAGT 59.237 52.381 3.45 0.00 44.24 2.57
261 262 2.040178 ACCACGGATCAATCCCTAGTC 58.960 52.381 3.45 0.00 44.24 2.59
262 263 2.320781 CCACGGATCAATCCCTAGTCT 58.679 52.381 3.45 0.00 44.24 3.24
263 264 2.297597 CCACGGATCAATCCCTAGTCTC 59.702 54.545 3.45 0.00 44.24 3.36
264 265 2.297597 CACGGATCAATCCCTAGTCTCC 59.702 54.545 3.45 0.00 44.24 3.71
265 266 1.896465 CGGATCAATCCCTAGTCTCCC 59.104 57.143 3.45 0.00 44.24 4.30
266 267 1.896465 GGATCAATCCCTAGTCTCCCG 59.104 57.143 0.00 0.00 41.20 5.14
267 268 2.599677 GATCAATCCCTAGTCTCCCGT 58.400 52.381 0.00 0.00 0.00 5.28
268 269 1.776662 TCAATCCCTAGTCTCCCGTG 58.223 55.000 0.00 0.00 0.00 4.94
269 270 0.105039 CAATCCCTAGTCTCCCGTGC 59.895 60.000 0.00 0.00 0.00 5.34
270 271 1.392710 AATCCCTAGTCTCCCGTGCG 61.393 60.000 0.00 0.00 0.00 5.34
271 272 3.528370 CCCTAGTCTCCCGTGCGG 61.528 72.222 3.25 3.25 0.00 5.69
272 273 2.439701 CCTAGTCTCCCGTGCGGA 60.440 66.667 12.71 0.00 38.83 5.54
273 274 2.772691 CCTAGTCTCCCGTGCGGAC 61.773 68.421 12.71 0.00 34.86 4.79
274 275 3.109612 CTAGTCTCCCGTGCGGACG 62.110 68.421 23.45 23.45 45.67 4.79
287 288 2.183555 GGACGACCGTGCCCTTAG 59.816 66.667 0.00 0.00 0.00 2.18
288 289 2.508663 GACGACCGTGCCCTTAGC 60.509 66.667 0.00 0.00 44.14 3.09
289 290 4.078516 ACGACCGTGCCCTTAGCC 62.079 66.667 0.00 0.00 42.71 3.93
290 291 4.077184 CGACCGTGCCCTTAGCCA 62.077 66.667 0.00 0.00 42.71 4.75
291 292 2.590092 GACCGTGCCCTTAGCCAT 59.410 61.111 0.00 0.00 42.71 4.40
292 293 1.523938 GACCGTGCCCTTAGCCATC 60.524 63.158 0.00 0.00 42.71 3.51
293 294 2.588877 CCGTGCCCTTAGCCATCG 60.589 66.667 0.00 0.00 42.71 3.84
294 295 3.272334 CGTGCCCTTAGCCATCGC 61.272 66.667 0.00 0.00 42.71 4.58
295 296 2.124736 GTGCCCTTAGCCATCGCA 60.125 61.111 0.00 0.00 42.71 5.10
296 297 2.124736 TGCCCTTAGCCATCGCAC 60.125 61.111 0.00 0.00 42.71 5.34
297 298 2.902343 GCCCTTAGCCATCGCACC 60.902 66.667 0.00 0.00 37.52 5.01
298 299 2.589540 CCCTTAGCCATCGCACCA 59.410 61.111 0.00 0.00 37.52 4.17
299 300 1.524621 CCCTTAGCCATCGCACCAG 60.525 63.158 0.00 0.00 37.52 4.00
300 301 1.524621 CCTTAGCCATCGCACCAGG 60.525 63.158 0.00 0.00 37.52 4.45
305 306 4.720902 CCATCGCACCAGGCACCA 62.721 66.667 0.00 0.00 45.17 4.17
306 307 3.434319 CATCGCACCAGGCACCAC 61.434 66.667 0.00 0.00 45.17 4.16
307 308 3.640407 ATCGCACCAGGCACCACT 61.640 61.111 0.00 0.00 45.17 4.00
308 309 3.196207 ATCGCACCAGGCACCACTT 62.196 57.895 0.00 0.00 45.17 3.16
309 310 3.663176 CGCACCAGGCACCACTTG 61.663 66.667 0.00 0.00 45.17 3.16
310 311 2.519302 GCACCAGGCACCACTTGT 60.519 61.111 0.00 0.00 43.97 3.16
321 322 3.988379 CACCACTTGTGTGCTTATGTT 57.012 42.857 0.00 0.00 42.54 2.71
323 324 4.783242 CACCACTTGTGTGCTTATGTTAC 58.217 43.478 0.00 0.00 42.54 2.50
324 325 4.274705 CACCACTTGTGTGCTTATGTTACA 59.725 41.667 0.00 0.00 42.54 2.41
325 326 4.515191 ACCACTTGTGTGCTTATGTTACAG 59.485 41.667 0.00 0.00 42.54 2.74
326 327 4.754618 CCACTTGTGTGCTTATGTTACAGA 59.245 41.667 0.00 0.00 42.54 3.41
327 328 5.238432 CCACTTGTGTGCTTATGTTACAGAA 59.762 40.000 0.00 0.00 42.54 3.02
328 329 6.365839 CACTTGTGTGCTTATGTTACAGAAG 58.634 40.000 14.56 14.56 45.64 2.85
329 330 6.545504 CTTGTGTGCTTATGTTACAGAAGT 57.454 37.500 18.97 0.00 39.47 3.01
330 331 5.922739 TGTGTGCTTATGTTACAGAAGTG 57.077 39.130 18.97 0.00 35.43 3.16
331 332 5.364778 TGTGTGCTTATGTTACAGAAGTGT 58.635 37.500 18.97 0.00 35.43 3.55
332 333 6.517605 TGTGTGCTTATGTTACAGAAGTGTA 58.482 36.000 18.97 5.70 35.43 2.90
333 334 7.158697 TGTGTGCTTATGTTACAGAAGTGTAT 58.841 34.615 18.97 0.00 38.98 2.29
334 335 7.659799 TGTGTGCTTATGTTACAGAAGTGTATT 59.340 33.333 18.97 0.00 38.98 1.89
335 336 9.146984 GTGTGCTTATGTTACAGAAGTGTATTA 57.853 33.333 18.97 0.88 38.98 0.98
336 337 9.366216 TGTGCTTATGTTACAGAAGTGTATTAG 57.634 33.333 18.97 0.00 38.98 1.73
337 338 9.367444 GTGCTTATGTTACAGAAGTGTATTAGT 57.633 33.333 18.97 0.00 38.98 2.24
338 339 9.938280 TGCTTATGTTACAGAAGTGTATTAGTT 57.062 29.630 18.97 0.00 38.98 2.24
357 358 7.781548 TTAGTTTATAAGAACAGAATCCGGC 57.218 36.000 0.00 0.00 31.94 6.13
358 359 4.809426 AGTTTATAAGAACAGAATCCGGCG 59.191 41.667 0.00 0.00 31.94 6.46
359 360 2.240493 ATAAGAACAGAATCCGGCGG 57.760 50.000 22.51 22.51 0.00 6.13
360 361 0.461339 TAAGAACAGAATCCGGCGGC 60.461 55.000 23.83 7.63 0.00 6.53
361 362 3.564027 GAACAGAATCCGGCGGCG 61.564 66.667 26.12 26.12 0.00 6.46
362 363 4.077184 AACAGAATCCGGCGGCGA 62.077 61.111 34.49 19.10 0.00 5.54
363 364 3.385749 AACAGAATCCGGCGGCGAT 62.386 57.895 34.49 20.52 0.00 4.58
364 365 2.588877 CAGAATCCGGCGGCGATT 60.589 61.111 34.49 26.98 32.62 3.34
365 366 2.180204 CAGAATCCGGCGGCGATTT 61.180 57.895 34.49 24.17 30.08 2.17
366 367 1.451387 AGAATCCGGCGGCGATTTT 60.451 52.632 34.49 21.58 30.08 1.82
367 368 0.179067 AGAATCCGGCGGCGATTTTA 60.179 50.000 34.49 12.62 30.08 1.52
368 369 0.658897 GAATCCGGCGGCGATTTTAA 59.341 50.000 34.49 10.76 30.08 1.52
369 370 1.064357 GAATCCGGCGGCGATTTTAAA 59.936 47.619 34.49 8.93 30.08 1.52
370 371 1.096416 ATCCGGCGGCGATTTTAAAA 58.904 45.000 34.49 2.51 0.00 1.52
371 372 1.096416 TCCGGCGGCGATTTTAAAAT 58.904 45.000 34.49 13.24 0.00 1.82
372 373 2.286872 TCCGGCGGCGATTTTAAAATA 58.713 42.857 34.49 0.00 0.00 1.40
373 374 2.681848 TCCGGCGGCGATTTTAAAATAA 59.318 40.909 34.49 0.00 0.00 1.40
374 375 3.128242 TCCGGCGGCGATTTTAAAATAAA 59.872 39.130 34.49 0.00 0.00 1.40
375 376 3.858238 CCGGCGGCGATTTTAAAATAAAA 59.142 39.130 34.49 0.00 0.00 1.52
376 377 4.326548 CCGGCGGCGATTTTAAAATAAAAA 59.673 37.500 34.49 0.00 33.15 1.94
377 378 5.242136 CGGCGGCGATTTTAAAATAAAAAC 58.758 37.500 29.19 4.24 31.50 2.43
378 379 5.242136 GGCGGCGATTTTAAAATAAAAACG 58.758 37.500 12.98 12.69 31.50 3.60
379 380 5.060693 GGCGGCGATTTTAAAATAAAAACGA 59.939 36.000 21.47 0.00 31.50 3.85
380 381 6.399775 GGCGGCGATTTTAAAATAAAAACGAA 60.400 34.615 21.47 0.00 31.50 3.85
381 382 7.168138 GCGGCGATTTTAAAATAAAAACGAAT 58.832 30.769 21.47 0.00 31.50 3.34
382 383 7.366206 GCGGCGATTTTAAAATAAAAACGAATC 59.634 33.333 21.47 12.50 31.50 2.52
383 384 7.569227 CGGCGATTTTAAAATAAAAACGAATCG 59.431 33.333 21.47 17.43 44.20 3.34
384 385 8.367396 GGCGATTTTAAAATAAAAACGAATCGT 58.633 29.630 21.47 0.96 43.63 3.73
405 406 1.515081 TTTTCTTCGCTTACCGGTGG 58.485 50.000 19.93 11.34 37.59 4.61
406 407 0.952010 TTTCTTCGCTTACCGGTGGC 60.952 55.000 19.93 19.94 37.59 5.01
407 408 2.047655 CTTCGCTTACCGGTGGCA 60.048 61.111 26.09 14.90 37.59 4.92
408 409 2.047655 TTCGCTTACCGGTGGCAG 60.048 61.111 26.09 19.98 37.59 4.85
409 410 4.752879 TCGCTTACCGGTGGCAGC 62.753 66.667 26.09 23.16 37.59 5.25
418 419 2.044352 GGTGGCAGCCGGGTAATT 60.044 61.111 5.47 0.00 0.00 1.40
419 420 1.225148 GGTGGCAGCCGGGTAATTA 59.775 57.895 5.47 0.00 0.00 1.40
420 421 0.818040 GGTGGCAGCCGGGTAATTAG 60.818 60.000 5.47 0.00 0.00 1.73
421 422 0.107361 GTGGCAGCCGGGTAATTAGT 60.107 55.000 5.47 0.00 0.00 2.24
422 423 0.107410 TGGCAGCCGGGTAATTAGTG 60.107 55.000 5.47 0.00 0.00 2.74
423 424 1.444917 GGCAGCCGGGTAATTAGTGC 61.445 60.000 5.47 3.10 0.00 4.40
424 425 1.444917 GCAGCCGGGTAATTAGTGCC 61.445 60.000 5.47 0.00 0.00 5.01
425 426 0.107410 CAGCCGGGTAATTAGTGCCA 60.107 55.000 5.47 0.00 32.51 4.92
426 427 0.621609 AGCCGGGTAATTAGTGCCAA 59.378 50.000 3.10 0.00 32.51 4.52
427 428 0.736636 GCCGGGTAATTAGTGCCAAC 59.263 55.000 2.18 0.00 32.51 3.77
428 429 1.680860 GCCGGGTAATTAGTGCCAACT 60.681 52.381 2.18 0.00 40.67 3.16
429 430 2.718563 CCGGGTAATTAGTGCCAACTT 58.281 47.619 0.00 0.00 37.88 2.66
430 431 2.681344 CCGGGTAATTAGTGCCAACTTC 59.319 50.000 0.00 0.00 37.88 3.01
431 432 2.350498 CGGGTAATTAGTGCCAACTTCG 59.650 50.000 0.00 0.00 37.88 3.79
432 433 3.602483 GGGTAATTAGTGCCAACTTCGA 58.398 45.455 0.00 0.00 37.88 3.71
433 434 3.621715 GGGTAATTAGTGCCAACTTCGAG 59.378 47.826 0.00 0.00 37.88 4.04
434 435 3.621715 GGTAATTAGTGCCAACTTCGAGG 59.378 47.826 0.00 0.00 37.88 4.63
442 443 1.701704 CCAACTTCGAGGCAATTTGC 58.298 50.000 13.04 13.04 44.08 3.68
452 453 2.640684 GCAATTTGCATGACGGACG 58.359 52.632 16.35 0.00 44.26 4.79
453 454 0.167908 GCAATTTGCATGACGGACGA 59.832 50.000 16.35 0.00 44.26 4.20
454 455 1.882198 CAATTTGCATGACGGACGAC 58.118 50.000 0.00 0.00 0.00 4.34
455 456 0.802494 AATTTGCATGACGGACGACC 59.198 50.000 0.00 0.00 0.00 4.79
456 457 0.321210 ATTTGCATGACGGACGACCA 60.321 50.000 4.48 0.00 35.59 4.02
457 458 0.948623 TTTGCATGACGGACGACCAG 60.949 55.000 4.48 0.00 35.59 4.00
458 459 1.811645 TTGCATGACGGACGACCAGA 61.812 55.000 4.48 0.00 35.59 3.86
459 460 1.080093 GCATGACGGACGACCAGAA 60.080 57.895 4.48 0.00 35.59 3.02
460 461 1.078759 GCATGACGGACGACCAGAAG 61.079 60.000 4.48 0.00 35.59 2.85
461 462 1.078759 CATGACGGACGACCAGAAGC 61.079 60.000 4.48 0.00 35.59 3.86
462 463 1.532604 ATGACGGACGACCAGAAGCA 61.533 55.000 4.48 0.00 35.59 3.91
463 464 1.006571 GACGGACGACCAGAAGCAA 60.007 57.895 4.48 0.00 35.59 3.91
464 465 0.389948 GACGGACGACCAGAAGCAAT 60.390 55.000 4.48 0.00 35.59 3.56
465 466 0.892755 ACGGACGACCAGAAGCAATA 59.107 50.000 4.48 0.00 35.59 1.90
466 467 1.135083 ACGGACGACCAGAAGCAATAG 60.135 52.381 4.48 0.00 35.59 1.73
467 468 1.291132 GGACGACCAGAAGCAATAGC 58.709 55.000 0.00 0.00 37.27 2.97
468 469 1.291132 GACGACCAGAAGCAATAGCC 58.709 55.000 0.00 0.00 43.56 3.93
469 470 0.107654 ACGACCAGAAGCAATAGCCC 60.108 55.000 0.00 0.00 43.56 5.19
470 471 0.815615 CGACCAGAAGCAATAGCCCC 60.816 60.000 0.00 0.00 43.56 5.80
471 472 0.548510 GACCAGAAGCAATAGCCCCT 59.451 55.000 0.00 0.00 43.56 4.79
472 473 1.002857 ACCAGAAGCAATAGCCCCTT 58.997 50.000 0.00 0.00 43.56 3.95
473 474 2.172717 GACCAGAAGCAATAGCCCCTTA 59.827 50.000 0.00 0.00 43.56 2.69
474 475 2.785857 ACCAGAAGCAATAGCCCCTTAT 59.214 45.455 0.00 0.00 43.56 1.73
475 476 3.205282 ACCAGAAGCAATAGCCCCTTATT 59.795 43.478 0.00 0.00 43.56 1.40
476 477 4.415512 ACCAGAAGCAATAGCCCCTTATTA 59.584 41.667 0.00 0.00 43.56 0.98
477 478 5.006386 CCAGAAGCAATAGCCCCTTATTAG 58.994 45.833 0.00 0.00 43.56 1.73
478 479 5.456763 CCAGAAGCAATAGCCCCTTATTAGT 60.457 44.000 0.00 0.00 43.56 2.24
479 480 6.239887 CCAGAAGCAATAGCCCCTTATTAGTA 60.240 42.308 0.00 0.00 43.56 1.82
480 481 6.876257 CAGAAGCAATAGCCCCTTATTAGTAG 59.124 42.308 0.00 0.00 43.56 2.57
481 482 5.763876 AGCAATAGCCCCTTATTAGTAGG 57.236 43.478 0.00 0.00 43.56 3.18
504 505 5.648092 GGGGAAGATATATGTGTTGCCATAC 59.352 44.000 18.58 1.70 32.31 2.39
505 506 5.351465 GGGAAGATATATGTGTTGCCATACG 59.649 44.000 13.55 0.00 31.11 3.06
508 509 5.161358 AGATATATGTGTTGCCATACGTCG 58.839 41.667 0.00 0.00 30.47 5.12
510 511 1.075542 ATGTGTTGCCATACGTCGTG 58.924 50.000 8.47 0.00 0.00 4.35
511 512 1.131826 GTGTTGCCATACGTCGTGC 59.868 57.895 8.47 3.48 0.00 5.34
515 516 2.161078 TTGCCATACGTCGTGCCAGA 62.161 55.000 8.47 0.00 0.00 3.86
555 556 2.562635 AGCTAGATCAGTCGACGCTTA 58.437 47.619 10.46 0.00 0.00 3.09
556 557 2.943690 AGCTAGATCAGTCGACGCTTAA 59.056 45.455 10.46 0.00 0.00 1.85
557 558 3.566322 AGCTAGATCAGTCGACGCTTAAT 59.434 43.478 10.46 0.47 0.00 1.40
558 559 4.755629 AGCTAGATCAGTCGACGCTTAATA 59.244 41.667 10.46 0.00 0.00 0.98
559 560 5.413213 AGCTAGATCAGTCGACGCTTAATAT 59.587 40.000 10.46 1.03 0.00 1.28
560 561 6.072397 AGCTAGATCAGTCGACGCTTAATATT 60.072 38.462 10.46 0.00 0.00 1.28
561 562 7.119407 AGCTAGATCAGTCGACGCTTAATATTA 59.881 37.037 10.46 0.00 0.00 0.98
562 563 7.749570 GCTAGATCAGTCGACGCTTAATATTAA 59.250 37.037 10.46 7.66 0.00 1.40
563 564 9.268255 CTAGATCAGTCGACGCTTAATATTAAG 57.732 37.037 24.91 24.91 42.30 1.85
564 565 7.649973 AGATCAGTCGACGCTTAATATTAAGT 58.350 34.615 27.84 15.60 41.63 2.24
565 566 8.136165 AGATCAGTCGACGCTTAATATTAAGTT 58.864 33.333 27.84 18.91 41.63 2.66
566 567 7.445900 TCAGTCGACGCTTAATATTAAGTTG 57.554 36.000 27.84 23.36 41.63 3.16
567 568 7.031372 TCAGTCGACGCTTAATATTAAGTTGT 58.969 34.615 27.84 25.55 41.63 3.32
568 569 7.008901 TCAGTCGACGCTTAATATTAAGTTGTG 59.991 37.037 27.84 19.74 41.63 3.33
569 570 7.008901 CAGTCGACGCTTAATATTAAGTTGTGA 59.991 37.037 27.84 21.82 41.63 3.58
570 571 7.543172 AGTCGACGCTTAATATTAAGTTGTGAA 59.457 33.333 27.84 16.80 41.63 3.18
571 572 8.325997 GTCGACGCTTAATATTAAGTTGTGAAT 58.674 33.333 27.84 11.37 41.63 2.57
572 573 8.537223 TCGACGCTTAATATTAAGTTGTGAATC 58.463 33.333 27.84 16.64 41.63 2.52
573 574 8.325282 CGACGCTTAATATTAAGTTGTGAATCA 58.675 33.333 27.84 0.00 41.63 2.57
574 575 9.982291 GACGCTTAATATTAAGTTGTGAATCAA 57.018 29.630 27.84 0.00 41.63 2.57
582 583 7.713764 ATTAAGTTGTGAATCAAAGTTTGGC 57.286 32.000 15.47 6.45 37.81 4.52
583 584 4.734398 AGTTGTGAATCAAAGTTTGGCA 57.266 36.364 15.47 8.79 37.81 4.92
584 585 4.685924 AGTTGTGAATCAAAGTTTGGCAG 58.314 39.130 15.47 0.00 37.81 4.85
585 586 4.160252 AGTTGTGAATCAAAGTTTGGCAGT 59.840 37.500 15.47 0.00 37.81 4.40
586 587 4.734398 TGTGAATCAAAGTTTGGCAGTT 57.266 36.364 15.47 6.07 0.00 3.16
619 620 2.515991 ATTGCATACCGGTGGGCG 60.516 61.111 19.93 3.48 36.48 6.13
771 775 0.976641 AGTCAAGTCAATCCTGCCGA 59.023 50.000 0.00 0.00 0.00 5.54
780 784 0.103208 AATCCTGCCGAGCTAAGTCG 59.897 55.000 0.00 0.00 39.77 4.18
783 787 1.064946 CTGCCGAGCTAAGTCGAGG 59.935 63.158 0.00 0.00 42.85 4.63
784 788 2.278923 GCCGAGCTAAGTCGAGGC 60.279 66.667 0.00 0.00 42.85 4.70
786 790 1.064946 CCGAGCTAAGTCGAGGCAG 59.935 63.158 0.00 0.00 42.85 4.85
830 834 2.254546 TGACATATTCACCATCGCCC 57.745 50.000 0.00 0.00 0.00 6.13
866 870 1.059657 CGATCAAACAAAGCACGCCG 61.060 55.000 0.00 0.00 0.00 6.46
875 879 3.876589 AAGCACGCCGTCGGTCAAT 62.877 57.895 13.94 0.00 40.69 2.57
930 934 9.847224 TCACTCACTCACTCACTATATATAACA 57.153 33.333 0.00 0.00 0.00 2.41
932 936 9.628500 ACTCACTCACTCACTATATATAACACA 57.372 33.333 0.00 0.00 0.00 3.72
934 938 9.847224 TCACTCACTCACTATATATAACACAGA 57.153 33.333 0.00 0.00 0.00 3.41
935 939 9.885934 CACTCACTCACTATATATAACACAGAC 57.114 37.037 0.00 0.00 0.00 3.51
936 940 9.628500 ACTCACTCACTATATATAACACAGACA 57.372 33.333 0.00 0.00 0.00 3.41
939 943 9.548208 CACTCACTATATATAACACAGACATCG 57.452 37.037 0.00 0.00 0.00 3.84
940 944 8.731605 ACTCACTATATATAACACAGACATCGG 58.268 37.037 0.00 0.00 0.00 4.18
941 945 7.535997 TCACTATATATAACACAGACATCGGC 58.464 38.462 0.00 0.00 0.00 5.54
942 946 6.469275 CACTATATATAACACAGACATCGGCG 59.531 42.308 0.00 0.00 0.00 6.46
943 947 1.847818 TATAACACAGACATCGGCGC 58.152 50.000 0.00 0.00 0.00 6.53
944 948 0.175760 ATAACACAGACATCGGCGCT 59.824 50.000 7.64 0.00 0.00 5.92
945 949 0.735978 TAACACAGACATCGGCGCTG 60.736 55.000 10.86 10.86 35.81 5.18
946 950 3.857854 CACAGACATCGGCGCTGC 61.858 66.667 12.58 3.95 33.03 5.25
957 961 3.327754 GCGCTGCCATACGTACCG 61.328 66.667 0.00 0.00 0.00 4.02
958 962 3.327754 CGCTGCCATACGTACCGC 61.328 66.667 0.00 2.78 0.00 5.68
959 963 2.965462 GCTGCCATACGTACCGCC 60.965 66.667 11.93 0.00 0.00 6.13
960 964 2.812499 CTGCCATACGTACCGCCT 59.188 61.111 11.93 0.00 0.00 5.52
961 965 1.299926 CTGCCATACGTACCGCCTC 60.300 63.158 11.93 0.00 0.00 4.70
962 966 1.735376 CTGCCATACGTACCGCCTCT 61.735 60.000 11.93 0.00 0.00 3.69
963 967 0.466007 TGCCATACGTACCGCCTCTA 60.466 55.000 11.93 0.00 0.00 2.43
964 968 0.240411 GCCATACGTACCGCCTCTAG 59.760 60.000 0.00 0.00 0.00 2.43
965 969 0.240411 CCATACGTACCGCCTCTAGC 59.760 60.000 0.00 0.00 38.52 3.42
966 970 0.949397 CATACGTACCGCCTCTAGCA 59.051 55.000 0.00 0.00 44.04 3.49
967 971 1.069159 CATACGTACCGCCTCTAGCAG 60.069 57.143 0.00 0.00 44.04 4.24
1016 1020 2.045926 GATGGCGGCACTGAAGGT 60.046 61.111 16.34 0.00 0.00 3.50
1071 1075 0.952497 CGCACATCCAGCAGTTGTCT 60.952 55.000 0.00 0.00 0.00 3.41
1189 1193 4.680237 CGCCTTCGGTGGACTGCA 62.680 66.667 0.00 0.00 0.00 4.41
1206 1210 1.003003 TGCATCGTGGATGGTCTGAAA 59.997 47.619 7.63 0.00 40.10 2.69
1274 1686 3.501548 TTTTATCGTGCCCGCCGC 61.502 61.111 0.00 0.00 38.31 6.53
1348 1768 5.351465 GTGGCTACGGATGTAAATGATATGG 59.649 44.000 0.00 0.00 0.00 2.74
1375 1795 3.469899 TTCGCTTTGAATTCACATCCG 57.530 42.857 7.89 8.88 0.00 4.18
1442 1862 3.229293 TGGACTTGCATGTGGATTTTGA 58.771 40.909 10.37 0.00 0.00 2.69
1447 1867 6.045072 ACTTGCATGTGGATTTTGATGAAT 57.955 33.333 4.14 0.00 0.00 2.57
1451 1871 5.892686 TGCATGTGGATTTTGATGAATAGGA 59.107 36.000 0.00 0.00 0.00 2.94
1478 1904 4.855388 CCGTCGGTTTCGATAATATTCGAT 59.145 41.667 2.08 0.00 46.55 3.59
1479 1905 5.219969 CCGTCGGTTTCGATAATATTCGATG 60.220 44.000 2.08 3.04 46.55 3.84
1480 1906 5.219969 CGTCGGTTTCGATAATATTCGATGG 60.220 44.000 0.56 0.00 46.55 3.51
1491 1917 8.755941 CGATAATATTCGATGGATGTGGATTAC 58.244 37.037 0.00 0.00 41.62 1.89
1492 1918 9.823647 GATAATATTCGATGGATGTGGATTACT 57.176 33.333 0.00 0.00 0.00 2.24
1493 1919 7.912056 AATATTCGATGGATGTGGATTACTG 57.088 36.000 0.00 0.00 0.00 2.74
1494 1920 4.753516 TTCGATGGATGTGGATTACTGT 57.246 40.909 0.00 0.00 0.00 3.55
1496 1922 5.862678 TCGATGGATGTGGATTACTGTTA 57.137 39.130 0.00 0.00 0.00 2.41
1497 1923 5.597806 TCGATGGATGTGGATTACTGTTAC 58.402 41.667 0.00 0.00 0.00 2.50
1537 1964 4.315803 AGGTTATCAAATCGCCTTATCCG 58.684 43.478 0.00 0.00 0.00 4.18
1538 1965 4.062991 GGTTATCAAATCGCCTTATCCGT 58.937 43.478 0.00 0.00 0.00 4.69
1539 1966 4.514066 GGTTATCAAATCGCCTTATCCGTT 59.486 41.667 0.00 0.00 0.00 4.44
1548 1978 5.662211 TCGCCTTATCCGTTAAAATTAGC 57.338 39.130 0.00 0.00 0.00 3.09
1549 1979 5.362263 TCGCCTTATCCGTTAAAATTAGCT 58.638 37.500 0.00 0.00 0.00 3.32
1551 1981 5.333875 CGCCTTATCCGTTAAAATTAGCTCC 60.334 44.000 0.00 0.00 0.00 4.70
1554 1984 6.766467 CCTTATCCGTTAAAATTAGCTCCTGT 59.234 38.462 0.00 0.00 0.00 4.00
1556 1986 4.258543 TCCGTTAAAATTAGCTCCTGTGG 58.741 43.478 0.00 0.00 0.00 4.17
1573 2004 0.993470 TGGCAACCCTAATACCCGTT 59.007 50.000 0.00 0.00 0.00 4.44
1580 2011 1.982958 CCCTAATACCCGTTAGGCCAT 59.017 52.381 5.01 0.00 46.14 4.40
1581 2012 2.374170 CCCTAATACCCGTTAGGCCATT 59.626 50.000 5.01 0.00 46.14 3.16
1582 2013 3.583966 CCCTAATACCCGTTAGGCCATTA 59.416 47.826 5.01 0.00 46.14 1.90
1583 2014 4.564199 CCCTAATACCCGTTAGGCCATTAC 60.564 50.000 5.01 0.00 46.14 1.89
1584 2015 4.040706 CCTAATACCCGTTAGGCCATTACA 59.959 45.833 5.01 0.00 42.97 2.41
1585 2016 4.506937 AATACCCGTTAGGCCATTACAA 57.493 40.909 5.01 0.00 40.58 2.41
1586 2017 4.717279 ATACCCGTTAGGCCATTACAAT 57.283 40.909 5.01 0.00 40.58 2.71
1587 2018 2.927028 ACCCGTTAGGCCATTACAATC 58.073 47.619 5.01 0.00 40.58 2.67
1588 2019 2.508300 ACCCGTTAGGCCATTACAATCT 59.492 45.455 5.01 0.00 40.58 2.40
1589 2020 3.712733 ACCCGTTAGGCCATTACAATCTA 59.287 43.478 5.01 0.00 40.58 1.98
1590 2021 4.349930 ACCCGTTAGGCCATTACAATCTAT 59.650 41.667 5.01 0.00 40.58 1.98
1591 2022 4.935808 CCCGTTAGGCCATTACAATCTATC 59.064 45.833 5.01 0.00 35.76 2.08
1592 2023 5.280011 CCCGTTAGGCCATTACAATCTATCT 60.280 44.000 5.01 0.00 35.76 1.98
1593 2024 6.070995 CCCGTTAGGCCATTACAATCTATCTA 60.071 42.308 5.01 0.00 35.76 1.98
1594 2025 7.364762 CCCGTTAGGCCATTACAATCTATCTAT 60.365 40.741 5.01 0.00 35.76 1.98
1595 2026 8.041323 CCGTTAGGCCATTACAATCTATCTATT 58.959 37.037 5.01 0.00 0.00 1.73
1600 2031 8.763601 AGGCCATTACAATCTATCTATTACTCC 58.236 37.037 5.01 0.00 0.00 3.85
1601 2032 7.988028 GGCCATTACAATCTATCTATTACTCCC 59.012 40.741 0.00 0.00 0.00 4.30
1602 2033 8.763601 GCCATTACAATCTATCTATTACTCCCT 58.236 37.037 0.00 0.00 0.00 4.20
1605 2036 8.577048 TTACAATCTATCTATTACTCCCTCCG 57.423 38.462 0.00 0.00 0.00 4.63
1606 2037 6.553857 ACAATCTATCTATTACTCCCTCCGT 58.446 40.000 0.00 0.00 0.00 4.69
1607 2038 7.011382 ACAATCTATCTATTACTCCCTCCGTT 58.989 38.462 0.00 0.00 0.00 4.44
1608 2039 7.177041 ACAATCTATCTATTACTCCCTCCGTTC 59.823 40.741 0.00 0.00 0.00 3.95
1609 2040 5.568392 TCTATCTATTACTCCCTCCGTTCC 58.432 45.833 0.00 0.00 0.00 3.62
1610 2041 3.675348 TCTATTACTCCCTCCGTTCCA 57.325 47.619 0.00 0.00 0.00 3.53
1611 2042 4.194678 TCTATTACTCCCTCCGTTCCAT 57.805 45.455 0.00 0.00 0.00 3.41
1612 2043 5.329191 TCTATTACTCCCTCCGTTCCATA 57.671 43.478 0.00 0.00 0.00 2.74
1613 2044 5.900437 TCTATTACTCCCTCCGTTCCATAT 58.100 41.667 0.00 0.00 0.00 1.78
1614 2045 6.320518 TCTATTACTCCCTCCGTTCCATATT 58.679 40.000 0.00 0.00 0.00 1.28
1615 2046 7.472741 TCTATTACTCCCTCCGTTCCATATTA 58.527 38.462 0.00 0.00 0.00 0.98
1616 2047 5.796424 TTACTCCCTCCGTTCCATATTAC 57.204 43.478 0.00 0.00 0.00 1.89
1617 2048 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
1618 2049 4.296056 ACTCCCTCCGTTCCATATTACTT 58.704 43.478 0.00 0.00 0.00 2.24
1619 2050 5.461327 ACTCCCTCCGTTCCATATTACTTA 58.539 41.667 0.00 0.00 0.00 2.24
1620 2051 6.082707 ACTCCCTCCGTTCCATATTACTTAT 58.917 40.000 0.00 0.00 0.00 1.73
1621 2052 6.210984 ACTCCCTCCGTTCCATATTACTTATC 59.789 42.308 0.00 0.00 0.00 1.75
1622 2053 5.184479 TCCCTCCGTTCCATATTACTTATCG 59.816 44.000 0.00 0.00 0.00 2.92
1623 2054 4.863131 CCTCCGTTCCATATTACTTATCGC 59.137 45.833 0.00 0.00 0.00 4.58
1624 2055 5.336531 CCTCCGTTCCATATTACTTATCGCT 60.337 44.000 0.00 0.00 0.00 4.93
1625 2056 5.466819 TCCGTTCCATATTACTTATCGCTG 58.533 41.667 0.00 0.00 0.00 5.18
1626 2057 5.242171 TCCGTTCCATATTACTTATCGCTGA 59.758 40.000 0.00 0.00 0.00 4.26
1627 2058 6.071560 TCCGTTCCATATTACTTATCGCTGAT 60.072 38.462 0.00 0.00 0.00 2.90
1628 2059 6.590292 CCGTTCCATATTACTTATCGCTGATT 59.410 38.462 0.00 0.00 0.00 2.57
1629 2060 7.117812 CCGTTCCATATTACTTATCGCTGATTT 59.882 37.037 0.00 0.00 0.00 2.17
1630 2061 9.135843 CGTTCCATATTACTTATCGCTGATTTA 57.864 33.333 0.00 0.00 0.00 1.40
1641 2072 9.035607 ACTTATCGCTGATTTAGTATGAAGTTG 57.964 33.333 0.00 0.00 0.00 3.16
1642 2073 8.942338 TTATCGCTGATTTAGTATGAAGTTGT 57.058 30.769 0.00 0.00 0.00 3.32
1644 2075 7.751047 TCGCTGATTTAGTATGAAGTTGTAC 57.249 36.000 0.00 0.00 0.00 2.90
1645 2076 7.544622 TCGCTGATTTAGTATGAAGTTGTACT 58.455 34.615 0.00 3.73 35.47 2.73
1646 2077 8.680001 TCGCTGATTTAGTATGAAGTTGTACTA 58.320 33.333 0.00 2.20 33.48 1.82
1647 2078 9.297586 CGCTGATTTAGTATGAAGTTGTACTAA 57.702 33.333 11.00 11.00 40.03 2.24
1654 2085 7.757097 AGTATGAAGTTGTACTAAATCAGCG 57.243 36.000 0.00 0.00 29.75 5.18
1655 2086 7.544622 AGTATGAAGTTGTACTAAATCAGCGA 58.455 34.615 0.00 0.00 29.75 4.93
1656 2087 6.648725 ATGAAGTTGTACTAAATCAGCGAC 57.351 37.500 0.00 0.00 0.00 5.19
1657 2088 4.619760 TGAAGTTGTACTAAATCAGCGACG 59.380 41.667 0.00 0.00 0.00 5.12
1658 2089 4.430137 AGTTGTACTAAATCAGCGACGA 57.570 40.909 0.00 0.00 0.00 4.20
1659 2090 4.413087 AGTTGTACTAAATCAGCGACGAG 58.587 43.478 0.00 0.00 0.00 4.18
1660 2091 4.082895 AGTTGTACTAAATCAGCGACGAGT 60.083 41.667 0.00 0.00 0.00 4.18
1661 2092 3.754955 TGTACTAAATCAGCGACGAGTG 58.245 45.455 0.00 0.00 0.00 3.51
1662 2093 3.437741 TGTACTAAATCAGCGACGAGTGA 59.562 43.478 0.00 0.15 0.00 3.41
1663 2094 3.784701 ACTAAATCAGCGACGAGTGAT 57.215 42.857 0.00 2.95 34.79 3.06
1664 2095 4.895224 ACTAAATCAGCGACGAGTGATA 57.105 40.909 12.05 0.13 32.93 2.15
1665 2096 5.440234 ACTAAATCAGCGACGAGTGATAT 57.560 39.130 12.05 2.99 32.93 1.63
1666 2097 5.215903 ACTAAATCAGCGACGAGTGATATG 58.784 41.667 12.05 8.67 32.93 1.78
1667 2098 2.713895 ATCAGCGACGAGTGATATGG 57.286 50.000 10.46 0.00 31.42 2.74
1668 2099 1.675552 TCAGCGACGAGTGATATGGA 58.324 50.000 0.00 0.00 0.00 3.41
1669 2100 2.021457 TCAGCGACGAGTGATATGGAA 58.979 47.619 0.00 0.00 0.00 3.53
1670 2101 2.120232 CAGCGACGAGTGATATGGAAC 58.880 52.381 0.00 0.00 0.00 3.62
1671 2102 1.121240 GCGACGAGTGATATGGAACG 58.879 55.000 0.00 0.00 0.00 3.95
1672 2103 1.755161 CGACGAGTGATATGGAACGG 58.245 55.000 0.00 0.00 0.00 4.44
1673 2104 1.332686 CGACGAGTGATATGGAACGGA 59.667 52.381 0.00 0.00 0.00 4.69
1674 2105 2.602456 CGACGAGTGATATGGAACGGAG 60.602 54.545 0.00 0.00 0.00 4.63
1675 2106 1.681793 ACGAGTGATATGGAACGGAGG 59.318 52.381 0.00 0.00 0.00 4.30
1676 2107 1.000163 CGAGTGATATGGAACGGAGGG 60.000 57.143 0.00 0.00 0.00 4.30
1677 2108 2.317040 GAGTGATATGGAACGGAGGGA 58.683 52.381 0.00 0.00 0.00 4.20
1678 2109 2.297597 GAGTGATATGGAACGGAGGGAG 59.702 54.545 0.00 0.00 0.00 4.30
1707 2138 5.193679 ACTTAAGACAAGAGGCAAACAAGT 58.806 37.500 10.09 0.00 0.00 3.16
1713 2144 4.147321 ACAAGAGGCAAACAAGTCATCAT 58.853 39.130 0.00 0.00 0.00 2.45
1768 2199 6.918022 GCATCAACTTTTTATTATAAGCGGCT 59.082 34.615 0.00 0.00 0.00 5.52
1787 2218 7.217200 AGCGGCTGAGATTTAAAGATATAACA 58.783 34.615 0.00 0.00 0.00 2.41
1832 4129 3.181501 GGCATATATTGTGTTGCACGTGT 60.182 43.478 18.38 0.00 37.14 4.49
1833 4130 4.028383 GCATATATTGTGTTGCACGTGTC 58.972 43.478 18.38 10.14 37.14 3.67
1834 4131 2.873170 ATATTGTGTTGCACGTGTCG 57.127 45.000 18.38 0.00 37.14 4.35
1845 4142 1.130749 GCACGTGTCGAGTCTATCACT 59.869 52.381 18.38 0.00 38.45 3.41
1859 4156 8.722394 CGAGTCTATCACTTACAAGCATCTATA 58.278 37.037 0.00 0.00 34.41 1.31
1885 4182 4.155709 TGGGAAAGTGCCATCACAAATTA 58.844 39.130 0.00 0.00 45.49 1.40
1887 4184 4.021544 GGGAAAGTGCCATCACAAATTACA 60.022 41.667 0.00 0.00 45.49 2.41
1911 4208 8.049117 ACATACAATAAGTCCATCATTGACACT 58.951 33.333 0.00 0.00 35.15 3.55
1937 4236 0.988678 ATAGACCAAGCCCCCTCACC 60.989 60.000 0.00 0.00 0.00 4.02
1938 4237 2.409984 TAGACCAAGCCCCCTCACCA 62.410 60.000 0.00 0.00 0.00 4.17
1939 4238 2.780924 ACCAAGCCCCCTCACCAA 60.781 61.111 0.00 0.00 0.00 3.67
1940 4239 2.036256 CCAAGCCCCCTCACCAAG 59.964 66.667 0.00 0.00 0.00 3.61
1941 4240 2.538141 CCAAGCCCCCTCACCAAGA 61.538 63.158 0.00 0.00 0.00 3.02
1963 4262 3.901797 AAAGAGCCCAAGCCGGACG 62.902 63.158 5.05 0.00 41.25 4.79
1968 4267 3.861797 CCCAAGCCGGACGCCTAT 61.862 66.667 5.05 0.00 38.78 2.57
1969 4268 2.504274 CCCAAGCCGGACGCCTATA 61.504 63.158 5.05 0.00 38.78 1.31
2003 4317 0.598158 GTACGCACAGGTTTGACGGA 60.598 55.000 0.00 0.00 33.73 4.69
2021 4336 4.369182 ACGGACTTTCAGAGTTGTAGTTG 58.631 43.478 0.00 0.00 39.19 3.16
2029 4344 5.353394 TCAGAGTTGTAGTTGGAGTGTTT 57.647 39.130 0.00 0.00 0.00 2.83
2030 4345 5.357257 TCAGAGTTGTAGTTGGAGTGTTTC 58.643 41.667 0.00 0.00 0.00 2.78
2032 4347 5.760253 CAGAGTTGTAGTTGGAGTGTTTCAT 59.240 40.000 0.00 0.00 0.00 2.57
2047 4362 5.812127 AGTGTTTCATGTCAAAAGAAAAGGC 59.188 36.000 0.00 0.00 33.54 4.35
2050 4365 6.258287 TGTTTCATGTCAAAAGAAAAGGCATG 59.742 34.615 0.00 0.00 33.54 4.06
2056 4371 5.221402 TGTCAAAAGAAAAGGCATGCATGTA 60.221 36.000 26.79 0.00 0.00 2.29
2058 4373 6.202570 GTCAAAAGAAAAGGCATGCATGTAAA 59.797 34.615 26.79 0.00 0.00 2.01
2106 4421 2.188994 CAGACCTGCAGCCTAGGC 59.811 66.667 27.19 27.19 38.96 3.93
2107 4422 2.284921 AGACCTGCAGCCTAGGCA 60.285 61.111 34.70 14.36 44.88 4.75
2113 4428 4.871910 GCAGCCTAGGCAGCCCAG 62.872 72.222 34.50 18.04 45.86 4.45
2115 4430 4.748798 AGCCTAGGCAGCCCAGGT 62.749 66.667 34.70 9.43 44.88 4.00
2126 4441 1.452833 GCCCAGGTCCTGATCTTGC 60.453 63.158 21.23 10.41 32.44 4.01
2127 4442 1.225704 CCCAGGTCCTGATCTTGCC 59.774 63.158 21.23 0.00 32.44 4.52
2163 4478 3.188460 CCTATGCGCCGTTGCTAATTTAT 59.812 43.478 4.18 0.00 35.36 1.40
2166 4481 4.617808 TGCGCCGTTGCTAATTTATAAA 57.382 36.364 4.18 0.00 35.36 1.40
2167 4482 5.176407 TGCGCCGTTGCTAATTTATAAAT 57.824 34.783 4.18 4.81 35.36 1.40
2168 4483 6.301687 TGCGCCGTTGCTAATTTATAAATA 57.698 33.333 11.07 0.00 35.36 1.40
2211 4531 2.702270 AAAGAATCCCCAACAGCCTT 57.298 45.000 0.00 0.00 0.00 4.35
2213 4533 2.702270 AGAATCCCCAACAGCCTTTT 57.298 45.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.531503 TGGAAAACCATAAACTGTTTGTGA 57.468 33.333 25.46 4.36 35.03 3.58
1 2 7.784633 AATGGAAAACCATAAACTGTTTGTG 57.215 32.000 19.32 19.32 35.03 3.33
2 3 8.800370 AAAATGGAAAACCATAAACTGTTTGT 57.200 26.923 15.69 6.37 35.03 2.83
31 32 9.276397 CCAAATTTCAAAATGTTGTGAGTTTTC 57.724 29.630 0.00 0.00 36.07 2.29
32 33 8.791675 ACCAAATTTCAAAATGTTGTGAGTTTT 58.208 25.926 0.00 0.00 36.07 2.43
33 34 8.334263 ACCAAATTTCAAAATGTTGTGAGTTT 57.666 26.923 0.00 0.00 36.07 2.66
34 35 7.920160 ACCAAATTTCAAAATGTTGTGAGTT 57.080 28.000 0.00 0.00 36.07 3.01
35 36 7.823799 AGAACCAAATTTCAAAATGTTGTGAGT 59.176 29.630 0.00 0.00 36.07 3.41
36 37 8.200364 AGAACCAAATTTCAAAATGTTGTGAG 57.800 30.769 0.00 0.00 36.07 3.51
37 38 8.558973 AAGAACCAAATTTCAAAATGTTGTGA 57.441 26.923 0.00 0.00 36.07 3.58
38 39 9.623350 AAAAGAACCAAATTTCAAAATGTTGTG 57.377 25.926 0.00 0.00 36.07 3.33
39 40 9.623350 CAAAAGAACCAAATTTCAAAATGTTGT 57.377 25.926 0.00 0.00 36.07 3.32
40 41 9.837525 TCAAAAGAACCAAATTTCAAAATGTTG 57.162 25.926 0.00 0.00 35.95 3.33
47 48 9.236006 TGGATTTTCAAAAGAACCAAATTTCAA 57.764 25.926 4.43 0.00 0.00 2.69
48 49 8.798859 TGGATTTTCAAAAGAACCAAATTTCA 57.201 26.923 4.43 0.00 0.00 2.69
49 50 9.108284 TCTGGATTTTCAAAAGAACCAAATTTC 57.892 29.630 7.37 0.00 0.00 2.17
50 51 9.460019 TTCTGGATTTTCAAAAGAACCAAATTT 57.540 25.926 7.37 0.00 0.00 1.82
51 52 9.631257 ATTCTGGATTTTCAAAAGAACCAAATT 57.369 25.926 7.37 0.00 30.17 1.82
52 53 9.631257 AATTCTGGATTTTCAAAAGAACCAAAT 57.369 25.926 7.37 7.37 30.17 2.32
53 54 9.460019 AAATTCTGGATTTTCAAAAGAACCAAA 57.540 25.926 7.37 6.02 34.27 3.28
54 55 9.108284 GAAATTCTGGATTTTCAAAAGAACCAA 57.892 29.630 10.95 0.00 38.06 3.67
55 56 8.263640 TGAAATTCTGGATTTTCAAAAGAACCA 58.736 29.630 14.33 6.21 38.06 3.67
56 57 8.661352 TGAAATTCTGGATTTTCAAAAGAACC 57.339 30.769 14.33 0.00 38.06 3.62
126 127 9.191995 CCTGTTTTCTATTTCGTTTTTATGCTT 57.808 29.630 0.00 0.00 0.00 3.91
127 128 7.812669 CCCTGTTTTCTATTTCGTTTTTATGCT 59.187 33.333 0.00 0.00 0.00 3.79
128 129 7.062956 CCCCTGTTTTCTATTTCGTTTTTATGC 59.937 37.037 0.00 0.00 0.00 3.14
129 130 7.544217 CCCCCTGTTTTCTATTTCGTTTTTATG 59.456 37.037 0.00 0.00 0.00 1.90
130 131 7.608153 CCCCCTGTTTTCTATTTCGTTTTTAT 58.392 34.615 0.00 0.00 0.00 1.40
131 132 6.517027 GCCCCCTGTTTTCTATTTCGTTTTTA 60.517 38.462 0.00 0.00 0.00 1.52
132 133 5.740803 GCCCCCTGTTTTCTATTTCGTTTTT 60.741 40.000 0.00 0.00 0.00 1.94
133 134 4.262292 GCCCCCTGTTTTCTATTTCGTTTT 60.262 41.667 0.00 0.00 0.00 2.43
134 135 3.257375 GCCCCCTGTTTTCTATTTCGTTT 59.743 43.478 0.00 0.00 0.00 3.60
135 136 2.823747 GCCCCCTGTTTTCTATTTCGTT 59.176 45.455 0.00 0.00 0.00 3.85
136 137 2.041216 AGCCCCCTGTTTTCTATTTCGT 59.959 45.455 0.00 0.00 0.00 3.85
137 138 2.683362 GAGCCCCCTGTTTTCTATTTCG 59.317 50.000 0.00 0.00 0.00 3.46
138 139 3.024547 GGAGCCCCCTGTTTTCTATTTC 58.975 50.000 0.00 0.00 0.00 2.17
139 140 2.381961 TGGAGCCCCCTGTTTTCTATTT 59.618 45.455 0.00 0.00 35.38 1.40
140 141 2.000048 TGGAGCCCCCTGTTTTCTATT 59.000 47.619 0.00 0.00 35.38 1.73
141 142 1.285078 GTGGAGCCCCCTGTTTTCTAT 59.715 52.381 0.00 0.00 35.38 1.98
142 143 0.696501 GTGGAGCCCCCTGTTTTCTA 59.303 55.000 0.00 0.00 35.38 2.10
143 144 1.460699 GTGGAGCCCCCTGTTTTCT 59.539 57.895 0.00 0.00 35.38 2.52
144 145 1.971695 CGTGGAGCCCCCTGTTTTC 60.972 63.158 0.00 0.00 35.38 2.29
145 146 2.115266 CGTGGAGCCCCCTGTTTT 59.885 61.111 0.00 0.00 35.38 2.43
146 147 2.852075 TCGTGGAGCCCCCTGTTT 60.852 61.111 0.00 0.00 35.38 2.83
147 148 3.637273 GTCGTGGAGCCCCCTGTT 61.637 66.667 0.00 0.00 35.38 3.16
150 151 4.741239 ATGGTCGTGGAGCCCCCT 62.741 66.667 0.00 0.00 35.38 4.79
151 152 4.489771 CATGGTCGTGGAGCCCCC 62.490 72.222 0.00 0.00 0.00 5.40
152 153 4.489771 CCATGGTCGTGGAGCCCC 62.490 72.222 2.57 0.00 42.02 5.80
153 154 4.489771 CCCATGGTCGTGGAGCCC 62.490 72.222 11.73 0.00 42.02 5.19
156 157 3.687321 CTGGCCCATGGTCGTGGAG 62.687 68.421 11.73 0.00 42.02 3.86
157 158 3.716195 CTGGCCCATGGTCGTGGA 61.716 66.667 11.73 0.00 42.02 4.02
171 172 3.202001 CACGCGGTAATGGGCTGG 61.202 66.667 12.47 0.00 0.00 4.85
172 173 3.876198 GCACGCGGTAATGGGCTG 61.876 66.667 12.47 0.00 0.00 4.85
173 174 4.096003 AGCACGCGGTAATGGGCT 62.096 61.111 12.47 4.52 0.00 5.19
174 175 3.876198 CAGCACGCGGTAATGGGC 61.876 66.667 12.47 2.00 0.00 5.36
175 176 1.151777 CTACAGCACGCGGTAATGGG 61.152 60.000 12.47 0.00 0.00 4.00
176 177 1.151777 CCTACAGCACGCGGTAATGG 61.152 60.000 12.47 0.00 0.00 3.16
177 178 0.179121 TCCTACAGCACGCGGTAATG 60.179 55.000 12.47 6.17 0.00 1.90
178 179 0.102481 CTCCTACAGCACGCGGTAAT 59.898 55.000 12.47 0.00 0.00 1.89
179 180 1.509463 CTCCTACAGCACGCGGTAA 59.491 57.895 12.47 0.00 0.00 2.85
180 181 2.412323 CCTCCTACAGCACGCGGTA 61.412 63.158 12.47 1.41 0.00 4.02
181 182 3.760035 CCTCCTACAGCACGCGGT 61.760 66.667 12.47 0.00 0.00 5.68
182 183 3.760035 ACCTCCTACAGCACGCGG 61.760 66.667 12.47 0.00 0.00 6.46
183 184 2.507102 CACCTCCTACAGCACGCG 60.507 66.667 3.53 3.53 0.00 6.01
184 185 2.125512 CCACCTCCTACAGCACGC 60.126 66.667 0.00 0.00 0.00 5.34
185 186 2.125512 GCCACCTCCTACAGCACG 60.126 66.667 0.00 0.00 0.00 5.34
186 187 2.125512 CGCCACCTCCTACAGCAC 60.126 66.667 0.00 0.00 0.00 4.40
187 188 4.082523 GCGCCACCTCCTACAGCA 62.083 66.667 0.00 0.00 0.00 4.41
188 189 4.082523 TGCGCCACCTCCTACAGC 62.083 66.667 4.18 0.00 0.00 4.40
189 190 2.125512 GTGCGCCACCTCCTACAG 60.126 66.667 4.18 0.00 0.00 2.74
190 191 0.901114 TAAGTGCGCCACCTCCTACA 60.901 55.000 4.18 0.00 34.49 2.74
191 192 0.248289 TTAAGTGCGCCACCTCCTAC 59.752 55.000 4.18 0.00 34.49 3.18
192 193 0.535335 CTTAAGTGCGCCACCTCCTA 59.465 55.000 4.18 0.00 34.49 2.94
193 194 1.192146 TCTTAAGTGCGCCACCTCCT 61.192 55.000 4.18 0.00 34.49 3.69
194 195 0.741221 CTCTTAAGTGCGCCACCTCC 60.741 60.000 4.18 0.00 34.49 4.30
195 196 0.037232 ACTCTTAAGTGCGCCACCTC 60.037 55.000 4.18 0.00 34.49 3.85
196 197 0.320771 CACTCTTAAGTGCGCCACCT 60.321 55.000 4.18 0.00 46.01 4.00
197 198 2.162716 CACTCTTAAGTGCGCCACC 58.837 57.895 4.18 0.00 46.01 4.61
205 206 3.265489 TCCCCCATTTCCACTCTTAAGT 58.735 45.455 1.63 0.00 35.60 2.24
206 207 3.523564 TCTCCCCCATTTCCACTCTTAAG 59.476 47.826 0.00 0.00 0.00 1.85
207 208 3.537337 TCTCCCCCATTTCCACTCTTAA 58.463 45.455 0.00 0.00 0.00 1.85
208 209 3.214694 TCTCCCCCATTTCCACTCTTA 57.785 47.619 0.00 0.00 0.00 2.10
209 210 2.059756 TCTCCCCCATTTCCACTCTT 57.940 50.000 0.00 0.00 0.00 2.85
210 211 2.059756 TTCTCCCCCATTTCCACTCT 57.940 50.000 0.00 0.00 0.00 3.24
211 212 2.899303 TTTCTCCCCCATTTCCACTC 57.101 50.000 0.00 0.00 0.00 3.51
212 213 3.444029 CATTTTCTCCCCCATTTCCACT 58.556 45.455 0.00 0.00 0.00 4.00
213 214 2.501316 CCATTTTCTCCCCCATTTCCAC 59.499 50.000 0.00 0.00 0.00 4.02
214 215 2.561755 CCCATTTTCTCCCCCATTTCCA 60.562 50.000 0.00 0.00 0.00 3.53
215 216 2.118679 CCCATTTTCTCCCCCATTTCC 58.881 52.381 0.00 0.00 0.00 3.13
216 217 2.766263 GTCCCATTTTCTCCCCCATTTC 59.234 50.000 0.00 0.00 0.00 2.17
217 218 2.113414 TGTCCCATTTTCTCCCCCATTT 59.887 45.455 0.00 0.00 0.00 2.32
218 219 1.721691 TGTCCCATTTTCTCCCCCATT 59.278 47.619 0.00 0.00 0.00 3.16
219 220 1.288932 CTGTCCCATTTTCTCCCCCAT 59.711 52.381 0.00 0.00 0.00 4.00
220 221 0.704076 CTGTCCCATTTTCTCCCCCA 59.296 55.000 0.00 0.00 0.00 4.96
221 222 0.684479 GCTGTCCCATTTTCTCCCCC 60.684 60.000 0.00 0.00 0.00 5.40
222 223 0.039618 TGCTGTCCCATTTTCTCCCC 59.960 55.000 0.00 0.00 0.00 4.81
223 224 1.177401 GTGCTGTCCCATTTTCTCCC 58.823 55.000 0.00 0.00 0.00 4.30
224 225 1.177401 GGTGCTGTCCCATTTTCTCC 58.823 55.000 0.00 0.00 0.00 3.71
225 226 1.541588 GTGGTGCTGTCCCATTTTCTC 59.458 52.381 0.00 0.00 33.76 2.87
226 227 1.620822 GTGGTGCTGTCCCATTTTCT 58.379 50.000 0.00 0.00 33.76 2.52
227 228 0.240945 CGTGGTGCTGTCCCATTTTC 59.759 55.000 0.00 0.00 33.76 2.29
228 229 1.178534 CCGTGGTGCTGTCCCATTTT 61.179 55.000 0.00 0.00 33.76 1.82
229 230 1.603455 CCGTGGTGCTGTCCCATTT 60.603 57.895 0.00 0.00 33.76 2.32
230 231 1.852157 ATCCGTGGTGCTGTCCCATT 61.852 55.000 0.00 0.00 33.76 3.16
231 232 2.257409 GATCCGTGGTGCTGTCCCAT 62.257 60.000 0.00 0.00 33.76 4.00
232 233 2.927856 ATCCGTGGTGCTGTCCCA 60.928 61.111 0.00 0.00 0.00 4.37
233 234 2.125106 GATCCGTGGTGCTGTCCC 60.125 66.667 0.00 0.00 0.00 4.46
234 235 0.392998 ATTGATCCGTGGTGCTGTCC 60.393 55.000 0.00 0.00 0.00 4.02
235 236 1.009829 GATTGATCCGTGGTGCTGTC 58.990 55.000 0.00 0.00 0.00 3.51
236 237 0.392998 GGATTGATCCGTGGTGCTGT 60.393 55.000 0.00 0.00 37.19 4.40
237 238 2.397751 GGATTGATCCGTGGTGCTG 58.602 57.895 0.00 0.00 37.19 4.41
238 239 4.963878 GGATTGATCCGTGGTGCT 57.036 55.556 0.00 0.00 37.19 4.40
241 242 2.176247 ACTAGGGATTGATCCGTGGT 57.824 50.000 13.76 13.76 46.97 4.16
246 247 1.896465 CGGGAGACTAGGGATTGATCC 59.104 57.143 1.21 1.21 46.41 3.36
247 248 2.297597 CACGGGAGACTAGGGATTGATC 59.702 54.545 0.00 0.00 0.00 2.92
248 249 2.320781 CACGGGAGACTAGGGATTGAT 58.679 52.381 0.00 0.00 0.00 2.57
249 250 1.776662 CACGGGAGACTAGGGATTGA 58.223 55.000 0.00 0.00 0.00 2.57
250 251 0.105039 GCACGGGAGACTAGGGATTG 59.895 60.000 0.00 0.00 0.00 2.67
251 252 1.392710 CGCACGGGAGACTAGGGATT 61.393 60.000 0.00 0.00 0.00 3.01
252 253 1.828660 CGCACGGGAGACTAGGGAT 60.829 63.158 0.00 0.00 0.00 3.85
253 254 2.439701 CGCACGGGAGACTAGGGA 60.440 66.667 0.00 0.00 0.00 4.20
254 255 3.528370 CCGCACGGGAGACTAGGG 61.528 72.222 0.00 0.00 38.47 3.53
255 256 2.439701 TCCGCACGGGAGACTAGG 60.440 66.667 9.58 0.00 40.94 3.02
270 271 2.183555 CTAAGGGCACGGTCGTCC 59.816 66.667 0.00 0.00 0.00 4.79
271 272 2.508663 GCTAAGGGCACGGTCGTC 60.509 66.667 0.00 0.00 41.35 4.20
272 273 4.078516 GGCTAAGGGCACGGTCGT 62.079 66.667 0.00 0.00 44.01 4.34
273 274 4.077184 TGGCTAAGGGCACGGTCG 62.077 66.667 0.00 0.00 43.20 4.79
280 281 2.902343 GGTGCGATGGCTAAGGGC 60.902 66.667 0.15 0.00 40.82 5.19
281 282 1.524621 CTGGTGCGATGGCTAAGGG 60.525 63.158 0.15 0.00 40.82 3.95
282 283 1.524621 CCTGGTGCGATGGCTAAGG 60.525 63.158 0.15 1.60 40.82 2.69
283 284 2.182842 GCCTGGTGCGATGGCTAAG 61.183 63.158 0.15 0.00 43.05 2.18
284 285 2.124736 GCCTGGTGCGATGGCTAA 60.125 61.111 0.15 0.00 43.05 3.09
285 286 3.398310 TGCCTGGTGCGATGGCTA 61.398 61.111 0.15 0.00 46.23 3.93
288 289 4.720902 TGGTGCCTGGTGCGATGG 62.721 66.667 0.00 0.00 45.60 3.51
289 290 3.434319 GTGGTGCCTGGTGCGATG 61.434 66.667 0.00 0.00 45.60 3.84
290 291 3.196207 AAGTGGTGCCTGGTGCGAT 62.196 57.895 0.00 0.00 45.60 4.58
291 292 3.872603 AAGTGGTGCCTGGTGCGA 61.873 61.111 0.00 0.00 45.60 5.10
292 293 3.663176 CAAGTGGTGCCTGGTGCG 61.663 66.667 0.00 0.00 45.60 5.34
293 294 2.519302 ACAAGTGGTGCCTGGTGC 60.519 61.111 0.00 0.00 41.77 5.01
294 295 3.435590 CACAAGTGGTGCCTGGTG 58.564 61.111 0.00 0.00 41.36 4.17
303 304 4.754618 TCTGTAACATAAGCACACAAGTGG 59.245 41.667 5.08 0.00 45.98 4.00
305 306 6.017934 CACTTCTGTAACATAAGCACACAAGT 60.018 38.462 0.00 0.00 33.46 3.16
306 307 6.017934 ACACTTCTGTAACATAAGCACACAAG 60.018 38.462 0.00 0.00 0.00 3.16
307 308 5.820423 ACACTTCTGTAACATAAGCACACAA 59.180 36.000 0.00 0.00 0.00 3.33
308 309 5.364778 ACACTTCTGTAACATAAGCACACA 58.635 37.500 0.00 0.00 0.00 3.72
309 310 5.924475 ACACTTCTGTAACATAAGCACAC 57.076 39.130 0.00 0.00 0.00 3.82
310 311 9.366216 CTAATACACTTCTGTAACATAAGCACA 57.634 33.333 0.00 0.00 36.43 4.57
311 312 9.367444 ACTAATACACTTCTGTAACATAAGCAC 57.633 33.333 0.00 0.00 36.43 4.40
312 313 9.938280 AACTAATACACTTCTGTAACATAAGCA 57.062 29.630 0.00 0.00 36.43 3.91
331 332 9.485206 GCCGGATTCTGTTCTTATAAACTAATA 57.515 33.333 5.05 0.00 0.00 0.98
332 333 7.170998 CGCCGGATTCTGTTCTTATAAACTAAT 59.829 37.037 5.05 0.00 0.00 1.73
333 334 6.477688 CGCCGGATTCTGTTCTTATAAACTAA 59.522 38.462 5.05 0.00 0.00 2.24
334 335 5.981315 CGCCGGATTCTGTTCTTATAAACTA 59.019 40.000 5.05 0.00 0.00 2.24
335 336 4.809426 CGCCGGATTCTGTTCTTATAAACT 59.191 41.667 5.05 0.00 0.00 2.66
336 337 4.025145 CCGCCGGATTCTGTTCTTATAAAC 60.025 45.833 5.05 0.00 0.00 2.01
337 338 4.124238 CCGCCGGATTCTGTTCTTATAAA 58.876 43.478 5.05 0.00 0.00 1.40
338 339 3.724374 CCGCCGGATTCTGTTCTTATAA 58.276 45.455 5.05 0.00 0.00 0.98
339 340 2.547218 GCCGCCGGATTCTGTTCTTATA 60.547 50.000 7.68 0.00 0.00 0.98
340 341 1.810412 GCCGCCGGATTCTGTTCTTAT 60.810 52.381 7.68 0.00 0.00 1.73
341 342 0.461339 GCCGCCGGATTCTGTTCTTA 60.461 55.000 7.68 0.00 0.00 2.10
342 343 1.745489 GCCGCCGGATTCTGTTCTT 60.745 57.895 7.68 0.00 0.00 2.52
343 344 2.125106 GCCGCCGGATTCTGTTCT 60.125 61.111 7.68 0.00 0.00 3.01
344 345 3.564027 CGCCGCCGGATTCTGTTC 61.564 66.667 7.68 0.00 0.00 3.18
345 346 2.869503 AATCGCCGCCGGATTCTGTT 62.870 55.000 7.68 0.00 34.56 3.16
346 347 2.869503 AAATCGCCGCCGGATTCTGT 62.870 55.000 7.68 0.00 34.56 3.41
347 348 1.714899 AAAATCGCCGCCGGATTCTG 61.715 55.000 7.68 0.00 34.56 3.02
348 349 0.179067 TAAAATCGCCGCCGGATTCT 60.179 50.000 7.68 0.00 34.56 2.40
349 350 0.658897 TTAAAATCGCCGCCGGATTC 59.341 50.000 7.68 0.00 34.56 2.52
350 351 1.096416 TTTAAAATCGCCGCCGGATT 58.904 45.000 7.68 0.00 34.56 3.01
351 352 1.096416 TTTTAAAATCGCCGCCGGAT 58.904 45.000 7.68 0.00 34.56 4.18
352 353 1.096416 ATTTTAAAATCGCCGCCGGA 58.904 45.000 7.68 0.00 34.56 5.14
353 354 2.759538 TATTTTAAAATCGCCGCCGG 57.240 45.000 16.56 0.00 34.56 6.13
354 355 5.242136 GTTTTTATTTTAAAATCGCCGCCG 58.758 37.500 16.56 0.00 30.44 6.46
355 356 5.060693 TCGTTTTTATTTTAAAATCGCCGCC 59.939 36.000 16.56 2.40 30.44 6.13
356 357 6.068484 TCGTTTTTATTTTAAAATCGCCGC 57.932 33.333 16.56 5.86 30.44 6.53
357 358 7.569227 CGATTCGTTTTTATTTTAAAATCGCCG 59.431 33.333 16.56 12.48 30.44 6.46
358 359 8.367396 ACGATTCGTTTTTATTTTAAAATCGCC 58.633 29.630 16.56 6.34 36.35 5.54
385 386 1.874872 CCACCGGTAAGCGAAGAAAAA 59.125 47.619 6.87 0.00 0.00 1.94
386 387 1.515081 CCACCGGTAAGCGAAGAAAA 58.485 50.000 6.87 0.00 0.00 2.29
387 388 0.952010 GCCACCGGTAAGCGAAGAAA 60.952 55.000 6.87 0.00 0.00 2.52
388 389 1.375013 GCCACCGGTAAGCGAAGAA 60.375 57.895 6.87 0.00 0.00 2.52
389 390 2.263540 GCCACCGGTAAGCGAAGA 59.736 61.111 6.87 0.00 0.00 2.87
390 391 2.047655 TGCCACCGGTAAGCGAAG 60.048 61.111 20.38 1.83 0.00 3.79
391 392 2.047655 CTGCCACCGGTAAGCGAA 60.048 61.111 20.38 6.49 0.00 4.70
392 393 4.752879 GCTGCCACCGGTAAGCGA 62.753 66.667 20.38 10.95 0.00 4.93
401 402 0.818040 CTAATTACCCGGCTGCCACC 60.818 60.000 20.29 0.00 0.00 4.61
402 403 0.107361 ACTAATTACCCGGCTGCCAC 60.107 55.000 20.29 0.00 0.00 5.01
403 404 0.107410 CACTAATTACCCGGCTGCCA 60.107 55.000 20.29 0.00 0.00 4.92
404 405 1.444917 GCACTAATTACCCGGCTGCC 61.445 60.000 9.11 9.11 0.00 4.85
405 406 1.444917 GGCACTAATTACCCGGCTGC 61.445 60.000 0.00 0.00 0.00 5.25
406 407 0.107410 TGGCACTAATTACCCGGCTG 60.107 55.000 0.00 0.00 0.00 4.85
407 408 0.621609 TTGGCACTAATTACCCGGCT 59.378 50.000 0.00 0.00 0.00 5.52
408 409 0.736636 GTTGGCACTAATTACCCGGC 59.263 55.000 0.00 0.00 0.00 6.13
409 410 2.413310 AGTTGGCACTAATTACCCGG 57.587 50.000 0.00 0.00 0.00 5.73
410 411 2.350498 CGAAGTTGGCACTAATTACCCG 59.650 50.000 0.00 0.00 30.68 5.28
411 412 3.602483 TCGAAGTTGGCACTAATTACCC 58.398 45.455 0.00 0.00 30.68 3.69
412 413 3.621715 CCTCGAAGTTGGCACTAATTACC 59.378 47.826 0.00 0.00 30.68 2.85
413 414 3.063588 GCCTCGAAGTTGGCACTAATTAC 59.936 47.826 8.45 0.00 44.38 1.89
414 415 3.267483 GCCTCGAAGTTGGCACTAATTA 58.733 45.455 8.45 0.00 44.38 1.40
415 416 2.084546 GCCTCGAAGTTGGCACTAATT 58.915 47.619 8.45 0.00 44.38 1.40
416 417 1.739067 GCCTCGAAGTTGGCACTAAT 58.261 50.000 8.45 0.00 44.38 1.73
417 418 3.226884 GCCTCGAAGTTGGCACTAA 57.773 52.632 8.45 0.00 44.38 2.24
422 423 1.701704 CAAATTGCCTCGAAGTTGGC 58.298 50.000 6.47 6.47 44.95 4.52
423 424 1.000385 TGCAAATTGCCTCGAAGTTGG 60.000 47.619 15.98 0.00 44.23 3.77
424 425 2.420628 TGCAAATTGCCTCGAAGTTG 57.579 45.000 15.98 0.00 44.23 3.16
425 426 2.557924 TCATGCAAATTGCCTCGAAGTT 59.442 40.909 15.98 0.00 44.23 2.66
426 427 2.095059 GTCATGCAAATTGCCTCGAAGT 60.095 45.455 15.98 0.00 44.23 3.01
427 428 2.523015 GTCATGCAAATTGCCTCGAAG 58.477 47.619 15.98 0.00 44.23 3.79
428 429 1.135717 CGTCATGCAAATTGCCTCGAA 60.136 47.619 15.98 0.00 44.23 3.71
429 430 0.447406 CGTCATGCAAATTGCCTCGA 59.553 50.000 15.98 6.26 44.23 4.04
430 431 0.523968 CCGTCATGCAAATTGCCTCG 60.524 55.000 15.98 13.34 44.23 4.63
431 432 0.810648 TCCGTCATGCAAATTGCCTC 59.189 50.000 15.98 2.54 44.23 4.70
432 433 0.527565 GTCCGTCATGCAAATTGCCT 59.472 50.000 15.98 2.18 44.23 4.75
433 434 0.798009 CGTCCGTCATGCAAATTGCC 60.798 55.000 15.98 0.00 44.23 4.52
434 435 0.167908 TCGTCCGTCATGCAAATTGC 59.832 50.000 11.58 11.58 45.29 3.56
435 436 1.465689 GGTCGTCCGTCATGCAAATTG 60.466 52.381 0.00 0.00 0.00 2.32
436 437 0.802494 GGTCGTCCGTCATGCAAATT 59.198 50.000 0.00 0.00 0.00 1.82
437 438 0.321210 TGGTCGTCCGTCATGCAAAT 60.321 50.000 0.00 0.00 36.30 2.32
438 439 0.948623 CTGGTCGTCCGTCATGCAAA 60.949 55.000 0.00 0.00 36.30 3.68
439 440 1.374125 CTGGTCGTCCGTCATGCAA 60.374 57.895 0.00 0.00 36.30 4.08
440 441 1.811645 TTCTGGTCGTCCGTCATGCA 61.812 55.000 0.00 0.00 36.30 3.96
441 442 1.078759 CTTCTGGTCGTCCGTCATGC 61.079 60.000 0.00 0.00 36.30 4.06
442 443 1.078759 GCTTCTGGTCGTCCGTCATG 61.079 60.000 0.00 0.00 36.30 3.07
443 444 1.215647 GCTTCTGGTCGTCCGTCAT 59.784 57.895 0.00 0.00 36.30 3.06
444 445 1.740332 TTGCTTCTGGTCGTCCGTCA 61.740 55.000 0.00 0.00 36.30 4.35
445 446 0.389948 ATTGCTTCTGGTCGTCCGTC 60.390 55.000 0.00 0.00 36.30 4.79
446 447 0.892755 TATTGCTTCTGGTCGTCCGT 59.107 50.000 0.00 0.00 36.30 4.69
447 448 1.560923 CTATTGCTTCTGGTCGTCCG 58.439 55.000 0.00 0.00 36.30 4.79
448 449 1.291132 GCTATTGCTTCTGGTCGTCC 58.709 55.000 0.00 0.00 36.03 4.79
449 450 1.291132 GGCTATTGCTTCTGGTCGTC 58.709 55.000 0.00 0.00 39.59 4.20
450 451 0.107654 GGGCTATTGCTTCTGGTCGT 60.108 55.000 0.00 0.00 39.59 4.34
451 452 0.815615 GGGGCTATTGCTTCTGGTCG 60.816 60.000 0.00 0.00 39.59 4.79
452 453 0.548510 AGGGGCTATTGCTTCTGGTC 59.451 55.000 0.00 0.00 39.59 4.02
453 454 1.002857 AAGGGGCTATTGCTTCTGGT 58.997 50.000 0.00 0.00 39.59 4.00
454 455 3.515602 ATAAGGGGCTATTGCTTCTGG 57.484 47.619 0.00 0.00 39.59 3.86
455 456 5.625150 ACTAATAAGGGGCTATTGCTTCTG 58.375 41.667 0.00 0.00 39.59 3.02
456 457 5.913946 ACTAATAAGGGGCTATTGCTTCT 57.086 39.130 0.00 0.00 39.59 2.85
457 458 6.174049 CCTACTAATAAGGGGCTATTGCTTC 58.826 44.000 0.00 0.00 39.59 3.86
458 459 6.128138 CCTACTAATAAGGGGCTATTGCTT 57.872 41.667 0.00 0.00 39.59 3.91
459 460 5.763876 CCTACTAATAAGGGGCTATTGCT 57.236 43.478 0.00 0.00 39.59 3.91
473 474 8.322091 GCAACACATATATCTTCCCCTACTAAT 58.678 37.037 0.00 0.00 0.00 1.73
474 475 7.256547 GGCAACACATATATCTTCCCCTACTAA 60.257 40.741 0.00 0.00 0.00 2.24
475 476 6.212791 GGCAACACATATATCTTCCCCTACTA 59.787 42.308 0.00 0.00 0.00 1.82
476 477 5.013183 GGCAACACATATATCTTCCCCTACT 59.987 44.000 0.00 0.00 0.00 2.57
477 478 5.221843 TGGCAACACATATATCTTCCCCTAC 60.222 44.000 0.00 0.00 46.17 3.18
478 479 4.910913 TGGCAACACATATATCTTCCCCTA 59.089 41.667 0.00 0.00 46.17 3.53
479 480 3.721575 TGGCAACACATATATCTTCCCCT 59.278 43.478 0.00 0.00 46.17 4.79
480 481 4.098914 TGGCAACACATATATCTTCCCC 57.901 45.455 0.00 0.00 46.17 4.81
504 505 1.779569 AAAGTAGTTCTGGCACGACG 58.220 50.000 0.00 0.00 0.00 5.12
505 506 3.128349 TCAAAAGTAGTTCTGGCACGAC 58.872 45.455 0.00 0.00 0.00 4.34
508 509 4.381411 AGTCTCAAAAGTAGTTCTGGCAC 58.619 43.478 0.00 0.00 0.00 5.01
510 511 4.627900 GCTAGTCTCAAAAGTAGTTCTGGC 59.372 45.833 0.00 0.00 0.00 4.85
511 512 6.031751 AGCTAGTCTCAAAAGTAGTTCTGG 57.968 41.667 0.00 0.00 0.00 3.86
515 516 6.844097 AGCTAGCTAGTCTCAAAAGTAGTT 57.156 37.500 17.69 0.00 0.00 2.24
556 557 9.423061 GCCAAACTTTGATTCACAACTTAATAT 57.577 29.630 2.87 0.00 38.29 1.28
557 558 8.417106 TGCCAAACTTTGATTCACAACTTAATA 58.583 29.630 2.87 0.00 38.29 0.98
558 559 7.271511 TGCCAAACTTTGATTCACAACTTAAT 58.728 30.769 2.87 0.00 38.29 1.40
559 560 6.634805 TGCCAAACTTTGATTCACAACTTAA 58.365 32.000 2.87 0.00 38.29 1.85
560 561 6.127479 ACTGCCAAACTTTGATTCACAACTTA 60.127 34.615 2.87 0.00 38.29 2.24
561 562 5.083533 TGCCAAACTTTGATTCACAACTT 57.916 34.783 2.87 0.00 38.29 2.66
562 563 4.160252 ACTGCCAAACTTTGATTCACAACT 59.840 37.500 2.87 0.00 38.29 3.16
563 564 4.432712 ACTGCCAAACTTTGATTCACAAC 58.567 39.130 2.87 0.00 38.29 3.32
564 565 4.734398 ACTGCCAAACTTTGATTCACAA 57.266 36.364 2.87 0.00 36.65 3.33
565 566 4.734398 AACTGCCAAACTTTGATTCACA 57.266 36.364 2.87 0.00 0.00 3.58
566 567 4.207019 CGAAACTGCCAAACTTTGATTCAC 59.793 41.667 2.87 0.00 0.00 3.18
567 568 4.358851 CGAAACTGCCAAACTTTGATTCA 58.641 39.130 2.87 0.00 0.00 2.57
568 569 3.182372 GCGAAACTGCCAAACTTTGATTC 59.818 43.478 2.87 0.30 0.00 2.52
569 570 3.123050 GCGAAACTGCCAAACTTTGATT 58.877 40.909 2.87 0.00 0.00 2.57
570 571 2.742774 GCGAAACTGCCAAACTTTGAT 58.257 42.857 2.87 0.00 0.00 2.57
571 572 2.202295 GCGAAACTGCCAAACTTTGA 57.798 45.000 2.87 0.00 0.00 2.69
581 582 0.438830 CGTAGACAAGGCGAAACTGC 59.561 55.000 0.00 0.00 0.00 4.40
582 583 0.438830 GCGTAGACAAGGCGAAACTG 59.561 55.000 0.00 0.00 0.00 3.16
583 584 0.032952 TGCGTAGACAAGGCGAAACT 59.967 50.000 0.00 0.00 42.00 2.66
584 585 1.076332 ATGCGTAGACAAGGCGAAAC 58.924 50.000 0.00 0.00 42.00 2.78
585 586 1.463056 CAATGCGTAGACAAGGCGAAA 59.537 47.619 0.00 0.00 42.00 3.46
586 587 1.075542 CAATGCGTAGACAAGGCGAA 58.924 50.000 0.00 0.00 42.00 4.70
619 620 2.737376 GTCAGGCGTCACCCGTTC 60.737 66.667 0.00 0.00 40.58 3.95
665 666 3.198417 TGTACCAGTCACTCATGCATGAT 59.802 43.478 28.81 16.25 36.02 2.45
676 677 4.331168 CCTAGTAGTACGTGTACCAGTCAC 59.669 50.000 0.00 0.00 36.75 3.67
771 775 1.030488 TACGCTGCCTCGACTTAGCT 61.030 55.000 0.00 0.00 34.13 3.32
830 834 2.332654 CGGGCCGGAAAAGTTGAGG 61.333 63.158 20.56 0.00 0.00 3.86
875 879 2.892640 CAAGGATCGAGTGGGCGA 59.107 61.111 0.00 0.00 45.22 5.54
958 962 0.536233 TCGAGCTAGGCTGCTAGAGG 60.536 60.000 14.24 5.57 44.17 3.69
959 963 1.533625 ATCGAGCTAGGCTGCTAGAG 58.466 55.000 19.73 11.87 45.09 2.43
960 964 1.611006 CAATCGAGCTAGGCTGCTAGA 59.389 52.381 18.25 18.25 45.71 2.43
961 965 1.934399 GCAATCGAGCTAGGCTGCTAG 60.934 57.143 10.69 10.83 44.17 3.42
962 966 0.032678 GCAATCGAGCTAGGCTGCTA 59.967 55.000 10.69 0.00 44.17 3.49
963 967 1.684386 AGCAATCGAGCTAGGCTGCT 61.684 55.000 14.65 14.65 44.50 4.24
964 968 1.220817 GAGCAATCGAGCTAGGCTGC 61.221 60.000 11.32 11.32 46.75 5.25
965 969 0.599728 GGAGCAATCGAGCTAGGCTG 60.600 60.000 0.00 0.00 46.75 4.85
966 970 1.045350 TGGAGCAATCGAGCTAGGCT 61.045 55.000 0.00 0.00 46.75 4.58
967 971 0.179073 TTGGAGCAATCGAGCTAGGC 60.179 55.000 0.00 0.00 46.75 3.93
1016 1020 2.513435 TGAACAGCAGCACGCACA 60.513 55.556 0.00 0.00 46.13 4.57
1021 1025 4.030452 GGCCGTGAACAGCAGCAC 62.030 66.667 0.00 0.00 0.00 4.40
1189 1193 2.028476 TCGTTTTCAGACCATCCACGAT 60.028 45.455 0.00 0.00 30.64 3.73
1206 1210 5.815740 TCAAGTAAGAAGAAGCTTGTTCGTT 59.184 36.000 25.19 21.16 39.28 3.85
1276 1688 2.019951 CCACTTTCACCGTCGACCG 61.020 63.158 10.58 6.12 0.00 4.79
1285 1697 1.618343 CACCCAAATCCCCACTTTCAC 59.382 52.381 0.00 0.00 0.00 3.18
1348 1768 8.534778 GGATGTGAATTCAAAGCGAAAATTATC 58.465 33.333 10.35 0.00 37.12 1.75
1375 1795 8.137437 AGTGCATACCATCTTAAAAACATATGC 58.863 33.333 1.58 11.17 42.46 3.14
1411 1831 3.887110 ACATGCAAGTCCATATGTGATGG 59.113 43.478 1.24 0.00 40.48 3.51
1442 1862 5.621555 CGAAACCGACGGATATCCTATTCAT 60.622 44.000 23.38 0.69 0.00 2.57
1447 1867 2.849942 TCGAAACCGACGGATATCCTA 58.150 47.619 23.38 2.86 0.00 2.94
1451 1871 6.690098 CGAATATTATCGAAACCGACGGATAT 59.310 38.462 23.38 7.73 45.48 1.63
1503 1930 8.299570 GCGATTTGATAACCTTGAATAATCCAT 58.700 33.333 0.00 0.00 0.00 3.41
1505 1932 7.040409 AGGCGATTTGATAACCTTGAATAATCC 60.040 37.037 0.00 0.00 0.00 3.01
1508 1935 7.639113 AAGGCGATTTGATAACCTTGAATAA 57.361 32.000 0.00 0.00 39.25 1.40
1537 1964 5.161358 GTTGCCACAGGAGCTAATTTTAAC 58.839 41.667 0.00 0.00 0.00 2.01
1538 1965 4.219725 GGTTGCCACAGGAGCTAATTTTAA 59.780 41.667 0.00 0.00 0.00 1.52
1539 1966 3.761752 GGTTGCCACAGGAGCTAATTTTA 59.238 43.478 0.00 0.00 0.00 1.52
1548 1978 2.421529 GGTATTAGGGTTGCCACAGGAG 60.422 54.545 0.00 0.00 0.00 3.69
1549 1979 1.562475 GGTATTAGGGTTGCCACAGGA 59.438 52.381 0.00 0.00 0.00 3.86
1551 1981 1.745827 CGGGTATTAGGGTTGCCACAG 60.746 57.143 0.00 0.00 0.00 3.66
1554 1984 0.993470 AACGGGTATTAGGGTTGCCA 59.007 50.000 0.00 0.00 0.00 4.92
1556 1986 2.842457 CCTAACGGGTATTAGGGTTGC 58.158 52.381 3.98 0.00 45.24 4.17
1580 2011 8.168725 ACGGAGGGAGTAATAGATAGATTGTAA 58.831 37.037 0.00 0.00 0.00 2.41
1581 2012 7.696981 ACGGAGGGAGTAATAGATAGATTGTA 58.303 38.462 0.00 0.00 0.00 2.41
1582 2013 6.553857 ACGGAGGGAGTAATAGATAGATTGT 58.446 40.000 0.00 0.00 0.00 2.71
1583 2014 7.363094 GGAACGGAGGGAGTAATAGATAGATTG 60.363 44.444 0.00 0.00 0.00 2.67
1584 2015 6.664384 GGAACGGAGGGAGTAATAGATAGATT 59.336 42.308 0.00 0.00 0.00 2.40
1585 2016 6.189133 GGAACGGAGGGAGTAATAGATAGAT 58.811 44.000 0.00 0.00 0.00 1.98
1586 2017 5.074102 TGGAACGGAGGGAGTAATAGATAGA 59.926 44.000 0.00 0.00 0.00 1.98
1587 2018 5.322754 TGGAACGGAGGGAGTAATAGATAG 58.677 45.833 0.00 0.00 0.00 2.08
1588 2019 5.329191 TGGAACGGAGGGAGTAATAGATA 57.671 43.478 0.00 0.00 0.00 1.98
1589 2020 4.194678 TGGAACGGAGGGAGTAATAGAT 57.805 45.455 0.00 0.00 0.00 1.98
1590 2021 3.675348 TGGAACGGAGGGAGTAATAGA 57.325 47.619 0.00 0.00 0.00 1.98
1591 2022 6.607004 AATATGGAACGGAGGGAGTAATAG 57.393 41.667 0.00 0.00 0.00 1.73
1592 2023 7.243824 AGTAATATGGAACGGAGGGAGTAATA 58.756 38.462 0.00 0.00 0.00 0.98
1593 2024 6.082707 AGTAATATGGAACGGAGGGAGTAAT 58.917 40.000 0.00 0.00 0.00 1.89
1594 2025 5.461327 AGTAATATGGAACGGAGGGAGTAA 58.539 41.667 0.00 0.00 0.00 2.24
1595 2026 5.070823 AGTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
1596 2027 3.924922 AGTAATATGGAACGGAGGGAGT 58.075 45.455 0.00 0.00 0.00 3.85
1597 2028 4.957684 AAGTAATATGGAACGGAGGGAG 57.042 45.455 0.00 0.00 0.00 4.30
1598 2029 5.184479 CGATAAGTAATATGGAACGGAGGGA 59.816 44.000 0.00 0.00 0.00 4.20
1599 2030 5.408356 CGATAAGTAATATGGAACGGAGGG 58.592 45.833 0.00 0.00 0.00 4.30
1600 2031 4.863131 GCGATAAGTAATATGGAACGGAGG 59.137 45.833 0.00 0.00 0.00 4.30
1601 2032 5.573282 CAGCGATAAGTAATATGGAACGGAG 59.427 44.000 0.00 0.00 0.00 4.63
1602 2033 5.242171 TCAGCGATAAGTAATATGGAACGGA 59.758 40.000 0.00 0.00 0.00 4.69
1603 2034 5.466819 TCAGCGATAAGTAATATGGAACGG 58.533 41.667 0.00 0.00 0.00 4.44
1604 2035 7.582435 AATCAGCGATAAGTAATATGGAACG 57.418 36.000 0.00 0.00 0.00 3.95
1615 2046 9.035607 CAACTTCATACTAAATCAGCGATAAGT 57.964 33.333 0.00 9.61 0.00 2.24
1616 2047 9.035607 ACAACTTCATACTAAATCAGCGATAAG 57.964 33.333 0.00 0.00 0.00 1.73
1617 2048 8.942338 ACAACTTCATACTAAATCAGCGATAA 57.058 30.769 0.00 0.00 0.00 1.75
1618 2049 9.459640 GTACAACTTCATACTAAATCAGCGATA 57.540 33.333 0.00 0.00 0.00 2.92
1619 2050 8.198109 AGTACAACTTCATACTAAATCAGCGAT 58.802 33.333 0.00 0.00 29.70 4.58
1620 2051 7.544622 AGTACAACTTCATACTAAATCAGCGA 58.455 34.615 0.00 0.00 29.70 4.93
1621 2052 7.757097 AGTACAACTTCATACTAAATCAGCG 57.243 36.000 0.00 0.00 29.70 5.18
1628 2059 9.297586 CGCTGATTTAGTACAACTTCATACTAA 57.702 33.333 0.00 0.00 40.47 2.24
1629 2060 8.680001 TCGCTGATTTAGTACAACTTCATACTA 58.320 33.333 0.00 0.00 33.65 1.82
1630 2061 7.488471 GTCGCTGATTTAGTACAACTTCATACT 59.512 37.037 0.00 0.00 35.76 2.12
1631 2062 7.513196 CGTCGCTGATTTAGTACAACTTCATAC 60.513 40.741 0.00 0.00 0.00 2.39
1632 2063 6.471198 CGTCGCTGATTTAGTACAACTTCATA 59.529 38.462 0.00 0.00 0.00 2.15
1633 2064 5.288712 CGTCGCTGATTTAGTACAACTTCAT 59.711 40.000 0.00 0.00 0.00 2.57
1634 2065 4.619760 CGTCGCTGATTTAGTACAACTTCA 59.380 41.667 0.00 0.00 0.00 3.02
1635 2066 4.855388 TCGTCGCTGATTTAGTACAACTTC 59.145 41.667 0.00 0.00 0.00 3.01
1636 2067 4.801891 TCGTCGCTGATTTAGTACAACTT 58.198 39.130 0.00 0.00 0.00 2.66
1637 2068 4.082895 ACTCGTCGCTGATTTAGTACAACT 60.083 41.667 0.00 0.00 0.00 3.16
1638 2069 4.030306 CACTCGTCGCTGATTTAGTACAAC 59.970 45.833 0.00 0.00 0.00 3.32
1639 2070 4.083164 TCACTCGTCGCTGATTTAGTACAA 60.083 41.667 0.00 0.00 0.00 2.41
1640 2071 3.437741 TCACTCGTCGCTGATTTAGTACA 59.562 43.478 0.00 0.00 0.00 2.90
1641 2072 4.012319 TCACTCGTCGCTGATTTAGTAC 57.988 45.455 0.00 0.00 0.00 2.73
1642 2073 4.895224 ATCACTCGTCGCTGATTTAGTA 57.105 40.909 0.71 0.00 0.00 1.82
1643 2074 3.784701 ATCACTCGTCGCTGATTTAGT 57.215 42.857 0.71 0.00 0.00 2.24
1644 2075 4.618912 CCATATCACTCGTCGCTGATTTAG 59.381 45.833 9.64 0.00 0.00 1.85
1645 2076 4.277423 TCCATATCACTCGTCGCTGATTTA 59.723 41.667 9.64 0.00 0.00 1.40
1646 2077 3.068165 TCCATATCACTCGTCGCTGATTT 59.932 43.478 9.64 1.74 0.00 2.17
1647 2078 2.623416 TCCATATCACTCGTCGCTGATT 59.377 45.455 9.64 0.00 0.00 2.57
1648 2079 2.230660 TCCATATCACTCGTCGCTGAT 58.769 47.619 9.39 9.39 0.00 2.90
1649 2080 1.675552 TCCATATCACTCGTCGCTGA 58.324 50.000 0.00 0.00 0.00 4.26
1650 2081 2.120232 GTTCCATATCACTCGTCGCTG 58.880 52.381 0.00 0.00 0.00 5.18
1651 2082 1.268589 CGTTCCATATCACTCGTCGCT 60.269 52.381 0.00 0.00 0.00 4.93
1652 2083 1.121240 CGTTCCATATCACTCGTCGC 58.879 55.000 0.00 0.00 0.00 5.19
1653 2084 1.332686 TCCGTTCCATATCACTCGTCG 59.667 52.381 0.00 0.00 0.00 5.12
1654 2085 2.287668 CCTCCGTTCCATATCACTCGTC 60.288 54.545 0.00 0.00 0.00 4.20
1655 2086 1.681793 CCTCCGTTCCATATCACTCGT 59.318 52.381 0.00 0.00 0.00 4.18
1656 2087 1.000163 CCCTCCGTTCCATATCACTCG 60.000 57.143 0.00 0.00 0.00 4.18
1657 2088 2.297597 CTCCCTCCGTTCCATATCACTC 59.702 54.545 0.00 0.00 0.00 3.51
1658 2089 2.320781 CTCCCTCCGTTCCATATCACT 58.679 52.381 0.00 0.00 0.00 3.41
1659 2090 2.040178 ACTCCCTCCGTTCCATATCAC 58.960 52.381 0.00 0.00 0.00 3.06
1660 2091 2.471815 ACTCCCTCCGTTCCATATCA 57.528 50.000 0.00 0.00 0.00 2.15
1661 2092 7.061688 AGTATATACTCCCTCCGTTCCATATC 58.938 42.308 9.71 0.00 0.00 1.63
1662 2093 6.982899 AGTATATACTCCCTCCGTTCCATAT 58.017 40.000 9.71 0.00 0.00 1.78
1663 2094 6.398655 AGTATATACTCCCTCCGTTCCATA 57.601 41.667 9.71 0.00 0.00 2.74
1664 2095 5.272405 AGTATATACTCCCTCCGTTCCAT 57.728 43.478 9.71 0.00 0.00 3.41
1665 2096 4.736611 AGTATATACTCCCTCCGTTCCA 57.263 45.455 9.71 0.00 0.00 3.53
1666 2097 6.944862 TCTTAAGTATATACTCCCTCCGTTCC 59.055 42.308 15.72 0.00 34.99 3.62
1667 2098 7.446625 TGTCTTAAGTATATACTCCCTCCGTTC 59.553 40.741 15.72 2.73 34.99 3.95
1668 2099 7.293073 TGTCTTAAGTATATACTCCCTCCGTT 58.707 38.462 15.72 0.67 34.99 4.44
1669 2100 6.845908 TGTCTTAAGTATATACTCCCTCCGT 58.154 40.000 15.72 1.38 34.99 4.69
1670 2101 7.664731 TCTTGTCTTAAGTATATACTCCCTCCG 59.335 40.741 15.72 2.86 34.99 4.63
1671 2102 8.937207 TCTTGTCTTAAGTATATACTCCCTCC 57.063 38.462 15.72 5.58 34.99 4.30
1672 2103 9.016438 CCTCTTGTCTTAAGTATATACTCCCTC 57.984 40.741 15.72 6.90 34.99 4.30
1673 2104 7.452189 GCCTCTTGTCTTAAGTATATACTCCCT 59.548 40.741 15.72 3.50 34.99 4.20
1674 2105 7.232941 TGCCTCTTGTCTTAAGTATATACTCCC 59.767 40.741 15.72 3.69 34.99 4.30
1675 2106 8.179509 TGCCTCTTGTCTTAAGTATATACTCC 57.820 38.462 15.72 3.38 34.99 3.85
1677 2108 9.819267 GTTTGCCTCTTGTCTTAAGTATATACT 57.181 33.333 9.71 9.71 38.39 2.12
1678 2109 9.595823 TGTTTGCCTCTTGTCTTAAGTATATAC 57.404 33.333 4.60 4.60 0.00 1.47
1707 2138 9.460019 TTTAATCTGTGTGGATAAACATGATGA 57.540 29.630 0.00 0.00 31.24 2.92
1743 2174 6.918022 AGCCGCTTATAATAAAAAGTTGATGC 59.082 34.615 0.00 0.00 0.00 3.91
1756 2187 8.854614 ATCTTTAAATCTCAGCCGCTTATAAT 57.145 30.769 0.00 0.00 0.00 1.28
1757 2188 9.944376 ATATCTTTAAATCTCAGCCGCTTATAA 57.056 29.630 0.00 0.00 0.00 0.98
1763 2194 7.421530 TGTTATATCTTTAAATCTCAGCCGC 57.578 36.000 0.00 0.00 0.00 6.53
1787 2218 7.559533 TGCCTCCACACAATATTTGTATGTAAT 59.440 33.333 0.00 0.00 43.23 1.89
1803 4100 4.498009 GCAACACAATATATGCCTCCACAC 60.498 45.833 0.00 0.00 32.73 3.82
1808 4105 3.312421 ACGTGCAACACAATATATGCCTC 59.688 43.478 0.00 0.00 38.00 4.70
1832 4129 5.590663 AGATGCTTGTAAGTGATAGACTCGA 59.409 40.000 0.00 0.00 31.73 4.04
1833 4130 5.826586 AGATGCTTGTAAGTGATAGACTCG 58.173 41.667 0.00 0.00 31.73 4.18
1867 4164 7.225784 TGTATGTAATTTGTGATGGCACTTT 57.774 32.000 0.00 0.00 45.36 2.66
1873 4170 9.950680 GGACTTATTGTATGTAATTTGTGATGG 57.049 33.333 0.00 0.00 0.00 3.51
1885 4182 8.049117 AGTGTCAATGATGGACTTATTGTATGT 58.951 33.333 1.10 0.00 36.26 2.29
1918 4217 0.988678 GGTGAGGGGGCTTGGTCTAT 60.989 60.000 0.00 0.00 0.00 1.98
1959 4258 5.290400 GTGAGTTTAGTTTGTATAGGCGTCC 59.710 44.000 0.00 0.00 0.00 4.79
1963 4262 6.021153 CGTACGTGAGTTTAGTTTGTATAGGC 60.021 42.308 7.22 0.00 46.40 3.93
1968 4267 4.440758 GTGCGTACGTGAGTTTAGTTTGTA 59.559 41.667 17.90 0.00 46.40 2.41
1969 4268 3.243643 GTGCGTACGTGAGTTTAGTTTGT 59.756 43.478 17.90 0.00 46.40 2.83
2003 4317 5.104900 ACACTCCAACTACAACTCTGAAAGT 60.105 40.000 0.00 0.00 41.10 2.66
2021 4336 6.476706 CCTTTTCTTTTGACATGAAACACTCC 59.523 38.462 0.00 0.00 30.26 3.85
2029 4344 4.202233 TGCATGCCTTTTCTTTTGACATGA 60.202 37.500 16.68 0.00 36.41 3.07
2030 4345 4.059511 TGCATGCCTTTTCTTTTGACATG 58.940 39.130 16.68 0.00 37.17 3.21
2032 4347 3.815856 TGCATGCCTTTTCTTTTGACA 57.184 38.095 16.68 0.00 0.00 3.58
2097 4412 4.186715 CCTGGGCTGCCTAGGCTG 62.187 72.222 34.11 31.80 45.03 4.85
2101 4416 2.366167 AGGACCTGGGCTGCCTAG 60.366 66.667 23.72 23.72 31.55 3.02
2102 4417 2.551856 ATCAGGACCTGGGCTGCCTA 62.552 60.000 21.56 12.28 31.51 3.93
2103 4418 3.958629 ATCAGGACCTGGGCTGCCT 62.959 63.158 21.56 0.00 31.51 4.75
2104 4419 3.412624 GATCAGGACCTGGGCTGCC 62.413 68.421 21.56 11.05 31.51 4.85
2105 4420 1.919600 AAGATCAGGACCTGGGCTGC 61.920 60.000 21.56 6.74 31.51 5.25
2106 4421 0.107312 CAAGATCAGGACCTGGGCTG 60.107 60.000 21.56 9.97 31.51 4.85
2107 4422 1.919600 GCAAGATCAGGACCTGGGCT 61.920 60.000 21.56 15.21 31.51 5.19
2108 4423 1.452833 GCAAGATCAGGACCTGGGC 60.453 63.158 21.56 13.23 31.51 5.36
2109 4424 1.225704 GGCAAGATCAGGACCTGGG 59.774 63.158 21.56 7.51 31.51 4.45
2113 4428 1.649271 ATGGGGGCAAGATCAGGACC 61.649 60.000 0.00 0.00 0.00 4.46
2115 4430 0.920763 ACATGGGGGCAAGATCAGGA 60.921 55.000 0.00 0.00 0.00 3.86
2126 4441 3.686016 GCATAGGTGTATTACATGGGGG 58.314 50.000 0.00 0.00 0.00 5.40
2127 4442 3.334691 CGCATAGGTGTATTACATGGGG 58.665 50.000 0.00 0.00 0.00 4.96
2163 4478 0.257616 GGGTGGCTGCTGGGTATTTA 59.742 55.000 0.00 0.00 0.00 1.40
2166 4481 2.561378 TAGGGGTGGCTGCTGGGTAT 62.561 60.000 0.00 0.00 0.00 2.73
2167 4482 2.774322 TTAGGGGTGGCTGCTGGGTA 62.774 60.000 0.00 0.00 0.00 3.69
2168 4483 4.675303 TAGGGGTGGCTGCTGGGT 62.675 66.667 0.00 0.00 0.00 4.51
2193 4513 2.702270 AAAGGCTGTTGGGGATTCTT 57.298 45.000 0.00 0.00 0.00 2.52
2194 4514 2.702270 AAAAGGCTGTTGGGGATTCT 57.298 45.000 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.