Multiple sequence alignment - TraesCS7D01G362300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G362300 chr7D 100.000 5204 0 0 1 5204 465481969 465476766 0.000000e+00 9611
1 TraesCS7D01G362300 chr7D 100.000 2232 0 0 5687 7918 465476283 465474052 0.000000e+00 4122
2 TraesCS7D01G362300 chr7B 98.428 5217 51 18 1 5204 490212171 490206973 0.000000e+00 9151
3 TraesCS7D01G362300 chr7B 95.615 2212 52 16 5687 7868 490206589 490204393 0.000000e+00 3506
4 TraesCS7D01G362300 chr7A 94.312 3059 113 25 28 3046 534321246 534324283 0.000000e+00 4628
5 TraesCS7D01G362300 chr7A 96.966 2175 52 9 3039 5204 534324479 534326648 0.000000e+00 3639
6 TraesCS7D01G362300 chr7A 93.569 1695 37 23 5687 7316 534326918 534328605 0.000000e+00 2460
7 TraesCS7D01G362300 chr7A 93.713 334 18 3 7301 7633 534328623 534328954 1.530000e-136 497
8 TraesCS7D01G362300 chr3D 93.296 179 9 2 4010 4187 87925985 87926161 2.190000e-65 261
9 TraesCS7D01G362300 chr5A 95.152 165 6 2 4023 4187 320214243 320214405 7.880000e-65 259
10 TraesCS7D01G362300 chr4D 95.152 165 6 1 4024 4188 34661688 34661526 7.880000e-65 259
11 TraesCS7D01G362300 chr2D 94.083 169 8 1 4023 4191 134301650 134301484 1.020000e-63 255
12 TraesCS7D01G362300 chr2B 94.578 166 7 1 4024 4189 608226886 608226723 1.020000e-63 255
13 TraesCS7D01G362300 chr5D 93.103 174 8 3 4023 4196 528616787 528616618 1.320000e-62 252
14 TraesCS7D01G362300 chr6B 91.351 185 13 2 4003 4187 226361699 226361518 4.740000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G362300 chr7D 465474052 465481969 7917 True 6866.5 9611 100.0000 1 7918 2 chr7D.!!$R1 7917
1 TraesCS7D01G362300 chr7B 490204393 490212171 7778 True 6328.5 9151 97.0215 1 7868 2 chr7B.!!$R1 7867
2 TraesCS7D01G362300 chr7A 534321246 534328954 7708 False 2806.0 4628 94.6400 28 7633 4 chr7A.!!$F1 7605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 641 0.835543 CCCCTCCCCTCTGCTCTATG 60.836 65.000 0.00 0.00 0.00 2.23 F
850 882 1.832912 GATCACGGCCTGATCCCTT 59.167 57.895 23.93 4.97 46.99 3.95 F
1563 1598 2.352127 GGCTGATTTGTTGCTCTTGTCC 60.352 50.000 0.00 0.00 0.00 4.02 F
3634 3886 5.694995 ACAGGGGTAATAATGATCTGTTGG 58.305 41.667 0.00 0.00 30.95 3.77 F
5871 6149 7.143340 CCAGAATAACAACATTATGCTCATGG 58.857 38.462 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1598 0.964700 TGCCATCCTCATAGCTCGAG 59.035 55.000 8.45 8.45 0.00 4.04 R
2058 2093 2.359850 GCAGGGCGTGTTGGATCA 60.360 61.111 9.16 0.00 0.00 2.92 R
3230 3482 0.396811 ACGCTACTCTTTTGGTGGCT 59.603 50.000 0.00 0.00 38.68 4.75 R
5764 6030 5.175127 GGTTGGTGAAACAAAGTTTGACAT 58.825 37.500 22.23 7.36 40.86 3.06 R
7894 8263 0.032267 GCTATACCGCCAGTCCAGAC 59.968 60.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.113354 ACCACTCGCGATCTTCTTAATTC 58.887 43.478 10.36 0.00 0.00 2.17
26 27 3.180584 CCACTCGCGATCTTCTTAATTCG 59.819 47.826 10.36 0.00 34.83 3.34
87 94 7.510549 AACAATAAAGGCGCAGTATATCAAT 57.489 32.000 10.83 0.00 0.00 2.57
281 291 1.753847 CGCTCCCCATTCTCTCTCTCT 60.754 57.143 0.00 0.00 0.00 3.10
282 292 1.963515 GCTCCCCATTCTCTCTCTCTC 59.036 57.143 0.00 0.00 0.00 3.20
283 293 2.424812 GCTCCCCATTCTCTCTCTCTCT 60.425 54.545 0.00 0.00 0.00 3.10
284 294 3.490348 CTCCCCATTCTCTCTCTCTCTC 58.510 54.545 0.00 0.00 0.00 3.20
285 295 2.176798 TCCCCATTCTCTCTCTCTCTCC 59.823 54.545 0.00 0.00 0.00 3.71
286 296 2.597455 CCCATTCTCTCTCTCTCTCCC 58.403 57.143 0.00 0.00 0.00 4.30
298 308 1.894756 CTCTCCCCCTCTAGTCGCG 60.895 68.421 0.00 0.00 0.00 5.87
613 633 1.083141 GGTTTCTCCCCTCCCCTCT 59.917 63.158 0.00 0.00 0.00 3.69
614 634 1.275421 GGTTTCTCCCCTCCCCTCTG 61.275 65.000 0.00 0.00 0.00 3.35
618 638 2.955246 TCCCCTCCCCTCTGCTCT 60.955 66.667 0.00 0.00 0.00 4.09
619 639 1.625879 TCCCCTCCCCTCTGCTCTA 60.626 63.158 0.00 0.00 0.00 2.43
620 640 1.007238 TCCCCTCCCCTCTGCTCTAT 61.007 60.000 0.00 0.00 0.00 1.98
621 641 0.835543 CCCCTCCCCTCTGCTCTATG 60.836 65.000 0.00 0.00 0.00 2.23
650 678 7.447238 AGTTTTGGATTTCTCTCCGTATTTTCA 59.553 33.333 0.00 0.00 38.21 2.69
850 882 1.832912 GATCACGGCCTGATCCCTT 59.167 57.895 23.93 4.97 46.99 3.95
1563 1598 2.352127 GGCTGATTTGTTGCTCTTGTCC 60.352 50.000 0.00 0.00 0.00 4.02
3634 3886 5.694995 ACAGGGGTAATAATGATCTGTTGG 58.305 41.667 0.00 0.00 30.95 3.77
5871 6149 7.143340 CCAGAATAACAACATTATGCTCATGG 58.857 38.462 0.00 0.00 0.00 3.66
5946 6244 8.090788 ACTCCATAAGTACTATCCATGTTTGT 57.909 34.615 0.00 0.00 36.07 2.83
6003 6301 9.624697 TTCAGTATGCTTGTTCATTTAATTCAC 57.375 29.630 0.00 0.00 34.76 3.18
6587 6917 0.693049 ACGGGATGGCTTTGAAGTCT 59.307 50.000 0.00 0.00 0.00 3.24
6975 7305 2.508663 GTCGCCTTACGTGCTCCC 60.509 66.667 0.00 0.00 44.19 4.30
7164 7494 3.000925 CCAGCCGTGTAAAAAGTATAGCG 59.999 47.826 0.00 0.00 0.00 4.26
7165 7495 2.606272 AGCCGTGTAAAAAGTATAGCGC 59.394 45.455 0.00 0.00 0.00 5.92
7246 7576 6.265196 TGCAATTTTGACTATCCTTGTGACTT 59.735 34.615 0.00 0.00 0.00 3.01
7264 7594 4.082625 TGACTTTGTTATCTGCAATGCTGG 60.083 41.667 12.07 2.57 0.00 4.85
7266 7596 1.836802 TGTTATCTGCAATGCTGGCA 58.163 45.000 12.07 0.00 39.32 4.92
7272 7606 2.558617 TGCAATGCTGGCAGTAGTG 58.441 52.632 25.29 25.29 36.11 2.74
7391 7758 4.631813 ACAATGAGCAGAAACCGTATCTTC 59.368 41.667 0.00 0.00 0.00 2.87
7435 7803 4.845621 CGCAGCATAATTTGGAAAAAGG 57.154 40.909 0.00 0.00 0.00 3.11
7554 7922 4.929808 ACATATTTAGCGGCTACAGTATGC 59.070 41.667 22.45 0.00 42.53 3.14
7567 7935 3.138304 ACAGTATGCGTGTGTGTCAATT 58.862 40.909 0.00 0.00 42.53 2.32
7568 7936 3.058983 ACAGTATGCGTGTGTGTCAATTG 60.059 43.478 0.00 0.00 42.53 2.32
7635 8004 2.609299 TGCGGTTGGGAGGATGGA 60.609 61.111 0.00 0.00 0.00 3.41
7640 8009 1.620819 CGGTTGGGAGGATGGATAGAG 59.379 57.143 0.00 0.00 0.00 2.43
7676 8045 8.676397 TCATCCTGATAAAGACCATATGATCT 57.324 34.615 3.65 0.00 0.00 2.75
7687 8056 7.493499 AGACCATATGATCTTAGATCTTGGG 57.507 40.000 26.77 23.17 0.00 4.12
7695 8064 2.170607 TCTTAGATCTTGGGCCCTTTCG 59.829 50.000 25.70 8.62 0.00 3.46
7715 8084 5.991328 TCGATTTGCAGGATTCAGAATAC 57.009 39.130 0.00 0.00 0.00 1.89
7716 8085 5.427378 TCGATTTGCAGGATTCAGAATACA 58.573 37.500 8.17 0.00 0.00 2.29
7717 8086 5.525012 TCGATTTGCAGGATTCAGAATACAG 59.475 40.000 8.17 0.55 0.00 2.74
7719 8088 6.037500 CGATTTGCAGGATTCAGAATACAGAA 59.962 38.462 8.17 0.00 0.00 3.02
7720 8089 6.500684 TTTGCAGGATTCAGAATACAGAAC 57.499 37.500 8.17 0.00 0.00 3.01
7721 8090 5.164620 TGCAGGATTCAGAATACAGAACA 57.835 39.130 8.17 0.00 0.00 3.18
7722 8091 5.181009 TGCAGGATTCAGAATACAGAACAG 58.819 41.667 8.17 0.00 0.00 3.16
7769 8138 5.693769 TTAGCCCACTTATAGCTGAGTTT 57.306 39.130 0.00 0.00 37.45 2.66
7830 8199 5.256474 TGAATCTTTCCAGGAGGTTTGATC 58.744 41.667 0.00 0.00 35.89 2.92
7836 8205 2.191400 CCAGGAGGTTTGATCAGAGGA 58.809 52.381 0.00 0.00 0.00 3.71
7840 8209 4.457257 CAGGAGGTTTGATCAGAGGAAAAC 59.543 45.833 0.00 0.00 32.89 2.43
7843 8212 5.478332 GGAGGTTTGATCAGAGGAAAACAAT 59.522 40.000 7.73 0.00 34.85 2.71
7877 8246 8.879342 AATATAGTGTGAATGAGTTAGAGTGC 57.121 34.615 0.00 0.00 0.00 4.40
7878 8247 3.579709 AGTGTGAATGAGTTAGAGTGCG 58.420 45.455 0.00 0.00 0.00 5.34
7879 8248 3.005897 AGTGTGAATGAGTTAGAGTGCGT 59.994 43.478 0.00 0.00 0.00 5.24
7880 8249 4.217767 AGTGTGAATGAGTTAGAGTGCGTA 59.782 41.667 0.00 0.00 0.00 4.42
7881 8250 4.921515 GTGTGAATGAGTTAGAGTGCGTAA 59.078 41.667 0.00 0.00 0.00 3.18
7882 8251 5.577164 GTGTGAATGAGTTAGAGTGCGTAAT 59.423 40.000 0.00 0.00 0.00 1.89
7883 8252 5.576774 TGTGAATGAGTTAGAGTGCGTAATG 59.423 40.000 0.00 0.00 0.00 1.90
7884 8253 5.005779 GTGAATGAGTTAGAGTGCGTAATGG 59.994 44.000 0.00 0.00 0.00 3.16
7885 8254 3.520290 TGAGTTAGAGTGCGTAATGGG 57.480 47.619 0.00 0.00 0.00 4.00
7886 8255 3.093814 TGAGTTAGAGTGCGTAATGGGA 58.906 45.455 0.00 0.00 0.00 4.37
7887 8256 3.119245 TGAGTTAGAGTGCGTAATGGGAC 60.119 47.826 0.00 0.00 0.00 4.46
7888 8257 3.097614 AGTTAGAGTGCGTAATGGGACT 58.902 45.455 0.00 0.00 41.62 3.85
7889 8258 4.275810 AGTTAGAGTGCGTAATGGGACTA 58.724 43.478 0.00 0.00 38.82 2.59
7890 8259 4.708421 AGTTAGAGTGCGTAATGGGACTAA 59.292 41.667 0.00 0.00 38.82 2.24
7891 8260 5.363005 AGTTAGAGTGCGTAATGGGACTAAT 59.637 40.000 0.00 0.00 38.82 1.73
7892 8261 4.060038 AGAGTGCGTAATGGGACTAATG 57.940 45.455 0.00 0.00 38.82 1.90
7893 8262 3.131396 GAGTGCGTAATGGGACTAATGG 58.869 50.000 0.00 0.00 38.82 3.16
7894 8263 2.158813 AGTGCGTAATGGGACTAATGGG 60.159 50.000 0.00 0.00 36.78 4.00
7895 8264 1.841277 TGCGTAATGGGACTAATGGGT 59.159 47.619 0.00 0.00 0.00 4.51
7896 8265 2.158871 TGCGTAATGGGACTAATGGGTC 60.159 50.000 0.00 0.00 35.66 4.46
7897 8266 2.104281 GCGTAATGGGACTAATGGGTCT 59.896 50.000 0.00 0.00 36.55 3.85
7898 8267 3.728845 CGTAATGGGACTAATGGGTCTG 58.271 50.000 0.00 0.00 36.55 3.51
7899 8268 3.494398 CGTAATGGGACTAATGGGTCTGG 60.494 52.174 0.00 0.00 36.55 3.86
7900 8269 2.587060 ATGGGACTAATGGGTCTGGA 57.413 50.000 0.00 0.00 36.55 3.86
7901 8270 1.580059 TGGGACTAATGGGTCTGGAC 58.420 55.000 0.00 0.00 36.55 4.02
7902 8271 1.080498 TGGGACTAATGGGTCTGGACT 59.920 52.381 0.67 0.00 36.55 3.85
7903 8272 1.486726 GGGACTAATGGGTCTGGACTG 59.513 57.143 0.67 0.00 36.55 3.51
7904 8273 1.486726 GGACTAATGGGTCTGGACTGG 59.513 57.143 0.67 0.00 36.55 4.00
7905 8274 0.912486 ACTAATGGGTCTGGACTGGC 59.088 55.000 0.67 0.00 0.00 4.85
7906 8275 0.179073 CTAATGGGTCTGGACTGGCG 60.179 60.000 0.67 0.00 0.00 5.69
7907 8276 1.622607 TAATGGGTCTGGACTGGCGG 61.623 60.000 0.00 0.00 0.00 6.13
7908 8277 4.954118 TGGGTCTGGACTGGCGGT 62.954 66.667 0.00 0.00 0.00 5.68
7909 8278 2.682494 GGGTCTGGACTGGCGGTA 60.682 66.667 0.00 0.00 0.00 4.02
7910 8279 2.064581 GGGTCTGGACTGGCGGTAT 61.065 63.158 0.00 0.00 0.00 2.73
7911 8280 0.757935 GGGTCTGGACTGGCGGTATA 60.758 60.000 0.00 0.00 0.00 1.47
7912 8281 0.674534 GGTCTGGACTGGCGGTATAG 59.325 60.000 0.00 0.59 0.00 1.31
7913 8282 0.032267 GTCTGGACTGGCGGTATAGC 59.968 60.000 0.00 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.877360 TTTCTCCGTTCCGATCGCCG 62.877 60.000 10.32 11.07 38.18 6.46
26 27 1.153706 TTTCTCCGTTCCGATCGCC 60.154 57.895 10.32 0.00 0.00 5.54
87 94 1.542547 GGTTTGGTCTCTTCCTTCGCA 60.543 52.381 0.00 0.00 0.00 5.10
281 291 2.192443 CGCGACTAGAGGGGGAGA 59.808 66.667 0.00 0.00 0.00 3.71
282 292 2.124236 ACGCGACTAGAGGGGGAG 60.124 66.667 15.93 0.00 0.00 4.30
283 293 2.124403 GACGCGACTAGAGGGGGA 60.124 66.667 15.93 0.00 0.00 4.81
284 294 3.217743 GGACGCGACTAGAGGGGG 61.218 72.222 15.93 0.00 0.00 5.40
285 295 3.217743 GGGACGCGACTAGAGGGG 61.218 72.222 15.93 0.00 0.00 4.79
286 296 2.439701 TGGGACGCGACTAGAGGG 60.440 66.667 15.93 0.90 0.00 4.30
559 579 1.207089 AGCGTTAGGAGCATTAGCACA 59.793 47.619 0.00 0.00 45.49 4.57
561 581 2.168521 AGAAGCGTTAGGAGCATTAGCA 59.831 45.455 0.00 0.00 45.49 3.49
618 638 4.876107 GGAGAGAAATCCAAAACTCGCATA 59.124 41.667 0.00 0.00 39.34 3.14
619 639 3.691609 GGAGAGAAATCCAAAACTCGCAT 59.308 43.478 0.00 0.00 39.34 4.73
620 640 3.074412 GGAGAGAAATCCAAAACTCGCA 58.926 45.455 0.00 0.00 39.34 5.10
621 641 2.094417 CGGAGAGAAATCCAAAACTCGC 59.906 50.000 0.00 0.00 39.53 5.03
813 843 4.209911 TGATCTCGCGAGCAAAATAAGATG 59.790 41.667 30.97 3.88 31.63 2.90
1563 1598 0.964700 TGCCATCCTCATAGCTCGAG 59.035 55.000 8.45 8.45 0.00 4.04
1941 1976 9.612620 GATATTAAAACCAGAACAGTGAACAAG 57.387 33.333 0.00 0.00 0.00 3.16
2058 2093 2.359850 GCAGGGCGTGTTGGATCA 60.360 61.111 9.16 0.00 0.00 2.92
3062 3305 9.442033 CACATGTTGATGTAATAACATAAGCAG 57.558 33.333 0.00 0.00 46.49 4.24
3218 3469 7.710907 ACTCTTTTGGTGGCTCTTTTTATTTTC 59.289 33.333 0.00 0.00 0.00 2.29
3230 3482 0.396811 ACGCTACTCTTTTGGTGGCT 59.603 50.000 0.00 0.00 38.68 4.75
3634 3886 7.096065 GGATCAGCAACATAACAACTCAAAAAC 60.096 37.037 0.00 0.00 0.00 2.43
4165 4417 8.953223 ATAGTACTCCTTCCGTTCCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
4166 4418 9.512588 CTATAGTACTCCTTCCGTTCCTAAATA 57.487 37.037 0.00 0.00 0.00 1.40
4258 4510 7.301054 CGATTTGCAACATAAGACTCTCTTTT 58.699 34.615 0.00 0.00 37.89 2.27
5764 6030 5.175127 GGTTGGTGAAACAAAGTTTGACAT 58.825 37.500 22.23 7.36 40.86 3.06
5769 6035 5.413309 TCATGGTTGGTGAAACAAAGTTT 57.587 34.783 0.00 0.00 40.86 2.66
5782 6048 5.560724 ACTATATTCGGGATTCATGGTTGG 58.439 41.667 0.00 0.00 0.00 3.77
5871 6149 6.241207 TGTACTTCTCTTAAACAGCAATGC 57.759 37.500 0.00 0.00 0.00 3.56
6003 6301 0.306533 CAACGGAAAGGGAACACACG 59.693 55.000 0.00 0.00 0.00 4.49
6050 6358 6.841443 TTCAATGCACATTAAACCAAACTG 57.159 33.333 0.00 0.00 0.00 3.16
6587 6917 5.185056 TGTCATAATCTGGAAGTTGTCTCGA 59.815 40.000 0.00 0.00 33.76 4.04
7164 7494 3.070748 GTCTCTTCCAACTGAAAGGAGC 58.929 50.000 0.00 0.00 39.30 4.70
7165 7495 4.342862 TGTCTCTTCCAACTGAAAGGAG 57.657 45.455 0.00 0.00 39.30 3.69
7246 7576 2.169330 TGCCAGCATTGCAGATAACAA 58.831 42.857 11.91 0.00 34.05 2.83
7282 7616 0.957395 CGGTTCTGTTCAGCAGGCAT 60.957 55.000 0.00 0.00 45.08 4.40
7286 7620 0.601046 TGCTCGGTTCTGTTCAGCAG 60.601 55.000 0.00 0.00 46.34 4.24
7288 7622 1.135859 CAATGCTCGGTTCTGTTCAGC 60.136 52.381 0.00 0.00 0.00 4.26
7391 7758 1.135315 CAGTGATTTTCCGCACCATGG 60.135 52.381 11.19 11.19 35.67 3.66
7435 7803 3.608316 ATGTGGAAGAGAGAAGACTGC 57.392 47.619 0.00 0.00 0.00 4.40
7514 7882 6.639632 AATATGTTATCACTGGCCAACATC 57.360 37.500 19.26 2.56 40.88 3.06
7554 7922 2.823196 ACACACAATTGACACACACG 57.177 45.000 13.59 0.00 0.00 4.49
7635 8004 4.734989 CAGGATGAGACGTTTTCGCTCTAT 60.735 45.833 0.00 0.00 43.62 1.98
7640 8009 1.710013 TCAGGATGAGACGTTTTCGC 58.290 50.000 0.00 0.00 42.56 4.70
7676 8045 2.193127 TCGAAAGGGCCCAAGATCTAA 58.807 47.619 27.56 4.46 0.00 2.10
7687 8056 1.106285 ATCCTGCAAATCGAAAGGGC 58.894 50.000 0.00 0.00 0.00 5.19
7695 8064 6.932356 TCTGTATTCTGAATCCTGCAAATC 57.068 37.500 6.10 0.00 0.00 2.17
7731 8100 3.756117 GGCTAATATTGCAGGCCTAAGT 58.244 45.455 3.98 0.00 39.68 2.24
7769 8138 8.358148 TGTTTTCAACCAAACAAAGTTAGTACA 58.642 29.630 0.00 0.00 42.42 2.90
7802 8171 3.766051 ACCTCCTGGAAAGATTCATTTGC 59.234 43.478 0.00 0.00 37.04 3.68
7859 8228 3.660501 ACGCACTCTAACTCATTCACA 57.339 42.857 0.00 0.00 0.00 3.58
7868 8237 3.521947 AGTCCCATTACGCACTCTAAC 57.478 47.619 0.00 0.00 0.00 2.34
7869 8238 5.452776 CCATTAGTCCCATTACGCACTCTAA 60.453 44.000 0.00 0.00 0.00 2.10
7870 8239 4.038763 CCATTAGTCCCATTACGCACTCTA 59.961 45.833 0.00 0.00 0.00 2.43
7871 8240 3.181465 CCATTAGTCCCATTACGCACTCT 60.181 47.826 0.00 0.00 0.00 3.24
7872 8241 3.131396 CCATTAGTCCCATTACGCACTC 58.869 50.000 0.00 0.00 0.00 3.51
7873 8242 2.158813 CCCATTAGTCCCATTACGCACT 60.159 50.000 0.00 0.00 0.00 4.40
7874 8243 2.218603 CCCATTAGTCCCATTACGCAC 58.781 52.381 0.00 0.00 0.00 5.34
7875 8244 1.841277 ACCCATTAGTCCCATTACGCA 59.159 47.619 0.00 0.00 0.00 5.24
7876 8245 2.104281 AGACCCATTAGTCCCATTACGC 59.896 50.000 0.00 0.00 37.49 4.42
7877 8246 3.494398 CCAGACCCATTAGTCCCATTACG 60.494 52.174 0.00 0.00 37.49 3.18
7878 8247 3.714798 TCCAGACCCATTAGTCCCATTAC 59.285 47.826 0.00 0.00 37.49 1.89
7879 8248 3.714798 GTCCAGACCCATTAGTCCCATTA 59.285 47.826 0.00 0.00 37.49 1.90
7880 8249 2.509964 GTCCAGACCCATTAGTCCCATT 59.490 50.000 0.00 0.00 37.49 3.16
7881 8250 2.127708 GTCCAGACCCATTAGTCCCAT 58.872 52.381 0.00 0.00 37.49 4.00
7882 8251 1.080498 AGTCCAGACCCATTAGTCCCA 59.920 52.381 0.00 0.00 37.49 4.37
7883 8252 1.486726 CAGTCCAGACCCATTAGTCCC 59.513 57.143 0.00 0.00 37.49 4.46
7884 8253 1.486726 CCAGTCCAGACCCATTAGTCC 59.513 57.143 0.00 0.00 37.49 3.85
7885 8254 1.134371 GCCAGTCCAGACCCATTAGTC 60.134 57.143 0.00 0.00 37.01 2.59
7886 8255 0.912486 GCCAGTCCAGACCCATTAGT 59.088 55.000 0.00 0.00 0.00 2.24
7887 8256 0.179073 CGCCAGTCCAGACCCATTAG 60.179 60.000 0.00 0.00 0.00 1.73
7888 8257 1.622607 CCGCCAGTCCAGACCCATTA 61.623 60.000 0.00 0.00 0.00 1.90
7889 8258 2.671070 CGCCAGTCCAGACCCATT 59.329 61.111 0.00 0.00 0.00 3.16
7890 8259 2.815684 TACCGCCAGTCCAGACCCAT 62.816 60.000 0.00 0.00 0.00 4.00
7891 8260 2.815684 ATACCGCCAGTCCAGACCCA 62.816 60.000 0.00 0.00 0.00 4.51
7892 8261 0.757935 TATACCGCCAGTCCAGACCC 60.758 60.000 0.00 0.00 0.00 4.46
7893 8262 0.674534 CTATACCGCCAGTCCAGACC 59.325 60.000 0.00 0.00 0.00 3.85
7894 8263 0.032267 GCTATACCGCCAGTCCAGAC 59.968 60.000 0.00 0.00 0.00 3.51
7895 8264 2.426651 GCTATACCGCCAGTCCAGA 58.573 57.895 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.