Multiple sequence alignment - TraesCS7D01G361800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G361800 chr7D 100.000 2732 0 0 1 2732 464138763 464136032 0.000000e+00 5046
1 TraesCS7D01G361800 chr7D 79.731 819 92 29 928 1707 464947902 464947119 2.410000e-145 525
2 TraesCS7D01G361800 chr7D 94.975 199 9 1 581 778 161844576 161844378 7.350000e-81 311
3 TraesCS7D01G361800 chr7D 88.557 201 21 2 4 203 521713860 521713661 2.720000e-60 243
4 TraesCS7D01G361800 chr7B 95.290 1932 59 15 806 2732 489552444 489550540 0.000000e+00 3035
5 TraesCS7D01G361800 chr7A 91.751 1188 54 17 806 1974 535590613 535591775 0.000000e+00 1611
6 TraesCS7D01G361800 chr7A 81.235 810 84 26 928 1695 534766216 534766999 2.340000e-165 592
7 TraesCS7D01G361800 chr7A 80.645 713 66 20 2043 2732 535591859 535592522 1.140000e-133 486
8 TraesCS7D01G361800 chr7A 83.902 205 31 2 1 203 274247749 274247545 7.720000e-46 195
9 TraesCS7D01G361800 chr6D 96.875 192 4 2 578 768 284659746 284659556 1.220000e-83 320
10 TraesCS7D01G361800 chr1D 95.455 198 7 2 573 768 93500972 93501169 5.680000e-82 315
11 TraesCS7D01G361800 chr1D 94.949 198 6 4 577 773 360475228 360475422 9.500000e-80 307
12 TraesCS7D01G361800 chr1D 90.196 153 11 3 436 585 338694203 338694052 2.150000e-46 196
13 TraesCS7D01G361800 chr5B 94.175 206 10 2 570 773 328365690 328365895 2.040000e-81 313
14 TraesCS7D01G361800 chr2D 96.335 191 6 1 580 769 20189303 20189493 2.040000e-81 313
15 TraesCS7D01G361800 chr2D 95.385 195 7 2 580 773 26038778 26038971 2.640000e-80 309
16 TraesCS7D01G361800 chr2D 85.854 205 28 1 1 205 325339825 325339622 1.650000e-52 217
17 TraesCS7D01G361800 chr5D 94.146 205 7 5 567 769 139129452 139129653 9.500000e-80 307
18 TraesCS7D01G361800 chr5D 87.500 200 25 0 1 200 480852993 480853192 5.880000e-57 231
19 TraesCS7D01G361800 chr3D 93.689 206 10 3 575 777 142708580 142708785 3.420000e-79 305
20 TraesCS7D01G361800 chr1B 85.446 213 30 1 1 212 673608856 673609068 1.270000e-53 220
21 TraesCS7D01G361800 chr4D 85.294 204 28 2 1 203 116154246 116154044 2.760000e-50 209
22 TraesCS7D01G361800 chr3A 91.558 154 9 3 435 585 741432092 741432244 2.760000e-50 209
23 TraesCS7D01G361800 chr3A 90.909 154 10 3 435 585 741395074 741395226 1.280000e-48 204
24 TraesCS7D01G361800 chr3A 90.909 154 10 3 435 585 741501159 741501311 1.280000e-48 204
25 TraesCS7D01G361800 chr3A 90.260 154 11 3 435 585 741413374 741413526 5.970000e-47 198
26 TraesCS7D01G361800 chr3A 90.260 154 11 4 435 585 741518289 741518441 5.970000e-47 198
27 TraesCS7D01G361800 chr3A 90.260 154 11 3 435 585 741556388 741556540 5.970000e-47 198
28 TraesCS7D01G361800 chr3A 90.323 155 10 5 435 585 741575336 741575489 5.970000e-47 198
29 TraesCS7D01G361800 chr4B 84.878 205 31 0 1 205 172374804 172375008 9.910000e-50 207
30 TraesCS7D01G361800 chr5A 90.667 150 11 3 439 585 597083542 597083393 2.150000e-46 196
31 TraesCS7D01G361800 chr2B 83.981 206 32 1 1 206 636869853 636870057 2.150000e-46 196
32 TraesCS7D01G361800 chr3B 83.251 203 34 0 1 203 533574636 533574838 1.290000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G361800 chr7D 464136032 464138763 2731 True 5046.0 5046 100.000 1 2732 1 chr7D.!!$R2 2731
1 TraesCS7D01G361800 chr7D 464947119 464947902 783 True 525.0 525 79.731 928 1707 1 chr7D.!!$R3 779
2 TraesCS7D01G361800 chr7B 489550540 489552444 1904 True 3035.0 3035 95.290 806 2732 1 chr7B.!!$R1 1926
3 TraesCS7D01G361800 chr7A 535590613 535592522 1909 False 1048.5 1611 86.198 806 2732 2 chr7A.!!$F2 1926
4 TraesCS7D01G361800 chr7A 534766216 534766999 783 False 592.0 592 81.235 928 1695 1 chr7A.!!$F1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 661 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.0 11.48 0.0 44.81 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2288 0.109412 GGTGACTACTAAGCACGCGT 60.109 55.0 5.58 5.58 33.31 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.028926 ACCAACAATTGTTATTTACGTGTGA 57.971 32.000 22.87 0.00 36.32 3.58
26 27 6.913673 ACCAACAATTGTTATTTACGTGTGAC 59.086 34.615 22.87 0.00 36.32 3.67
27 28 6.913132 CCAACAATTGTTATTTACGTGTGACA 59.087 34.615 22.87 0.00 36.32 3.58
28 29 7.593273 CCAACAATTGTTATTTACGTGTGACAT 59.407 33.333 22.87 0.00 36.32 3.06
29 30 8.963130 CAACAATTGTTATTTACGTGTGACATT 58.037 29.630 22.87 0.00 36.32 2.71
30 31 8.500837 ACAATTGTTATTTACGTGTGACATTG 57.499 30.769 4.92 7.00 0.00 2.82
31 32 8.132362 ACAATTGTTATTTACGTGTGACATTGT 58.868 29.630 4.92 7.51 0.00 2.71
32 33 8.416424 CAATTGTTATTTACGTGTGACATTGTG 58.584 33.333 0.00 0.00 0.00 3.33
33 34 6.606234 TGTTATTTACGTGTGACATTGTGT 57.394 33.333 0.00 0.00 0.00 3.72
34 35 7.017498 TGTTATTTACGTGTGACATTGTGTT 57.983 32.000 0.00 0.00 0.00 3.32
35 36 6.907748 TGTTATTTACGTGTGACATTGTGTTG 59.092 34.615 0.00 0.00 0.00 3.33
36 37 3.326733 TTACGTGTGACATTGTGTTGC 57.673 42.857 0.00 0.00 0.00 4.17
37 38 1.090728 ACGTGTGACATTGTGTTGCA 58.909 45.000 0.00 0.00 0.00 4.08
38 39 1.675483 ACGTGTGACATTGTGTTGCAT 59.325 42.857 0.00 0.00 0.00 3.96
39 40 2.045586 CGTGTGACATTGTGTTGCATG 58.954 47.619 0.00 0.00 0.00 4.06
40 41 2.286891 CGTGTGACATTGTGTTGCATGA 60.287 45.455 0.00 0.00 0.00 3.07
41 42 3.609879 CGTGTGACATTGTGTTGCATGAT 60.610 43.478 0.00 0.00 0.00 2.45
42 43 4.300803 GTGTGACATTGTGTTGCATGATT 58.699 39.130 0.00 0.00 0.00 2.57
43 44 4.149221 GTGTGACATTGTGTTGCATGATTG 59.851 41.667 0.00 0.00 0.00 2.67
44 45 4.037684 TGTGACATTGTGTTGCATGATTGA 59.962 37.500 0.00 0.00 0.00 2.57
45 46 4.383649 GTGACATTGTGTTGCATGATTGAC 59.616 41.667 0.00 0.00 0.00 3.18
46 47 3.567530 ACATTGTGTTGCATGATTGACG 58.432 40.909 0.00 0.00 0.00 4.35
47 48 3.004629 ACATTGTGTTGCATGATTGACGT 59.995 39.130 0.00 0.00 0.00 4.34
48 49 2.684754 TGTGTTGCATGATTGACGTG 57.315 45.000 0.00 0.00 38.43 4.49
59 60 6.606965 CATGATTGACGTGCATATATTTGC 57.393 37.500 10.83 10.83 43.07 3.68
81 82 9.985730 TTTGCATGAATTTAAGAGTCTGAATTT 57.014 25.926 13.17 6.63 0.00 1.82
82 83 8.975410 TGCATGAATTTAAGAGTCTGAATTTG 57.025 30.769 13.17 10.55 0.00 2.32
83 84 8.795513 TGCATGAATTTAAGAGTCTGAATTTGA 58.204 29.630 13.17 2.50 0.00 2.69
84 85 9.630098 GCATGAATTTAAGAGTCTGAATTTGAA 57.370 29.630 13.17 6.19 0.00 2.69
96 97 9.837525 GAGTCTGAATTTGAAATATATGGATGC 57.162 33.333 0.00 0.00 0.00 3.91
97 98 9.358406 AGTCTGAATTTGAAATATATGGATGCA 57.642 29.630 0.00 0.00 0.00 3.96
98 99 9.403110 GTCTGAATTTGAAATATATGGATGCAC 57.597 33.333 0.00 0.00 0.00 4.57
99 100 8.291740 TCTGAATTTGAAATATATGGATGCACG 58.708 33.333 0.00 0.00 0.00 5.34
100 101 8.164058 TGAATTTGAAATATATGGATGCACGA 57.836 30.769 0.00 0.00 0.00 4.35
101 102 8.628280 TGAATTTGAAATATATGGATGCACGAA 58.372 29.630 0.00 0.00 0.00 3.85
102 103 9.462174 GAATTTGAAATATATGGATGCACGAAA 57.538 29.630 0.00 0.00 0.00 3.46
103 104 8.801715 ATTTGAAATATATGGATGCACGAAAC 57.198 30.769 0.00 0.00 0.00 2.78
104 105 5.984627 TGAAATATATGGATGCACGAAACG 58.015 37.500 0.00 0.00 0.00 3.60
105 106 5.755861 TGAAATATATGGATGCACGAAACGA 59.244 36.000 0.00 0.00 0.00 3.85
106 107 6.258947 TGAAATATATGGATGCACGAAACGAA 59.741 34.615 0.00 0.00 0.00 3.85
107 108 6.612247 AATATATGGATGCACGAAACGAAA 57.388 33.333 0.00 0.00 0.00 3.46
108 109 6.801539 ATATATGGATGCACGAAACGAAAT 57.198 33.333 0.00 0.00 0.00 2.17
109 110 7.899178 ATATATGGATGCACGAAACGAAATA 57.101 32.000 0.00 0.00 0.00 1.40
110 111 6.801539 ATATGGATGCACGAAACGAAATAT 57.198 33.333 0.00 0.00 0.00 1.28
111 112 4.271590 TGGATGCACGAAACGAAATATG 57.728 40.909 0.00 0.00 0.00 1.78
112 113 3.935828 TGGATGCACGAAACGAAATATGA 59.064 39.130 0.00 0.00 0.00 2.15
113 114 4.033932 TGGATGCACGAAACGAAATATGAG 59.966 41.667 0.00 0.00 0.00 2.90
114 115 4.518217 GATGCACGAAACGAAATATGAGG 58.482 43.478 0.00 0.00 0.00 3.86
115 116 2.675844 TGCACGAAACGAAATATGAGGG 59.324 45.455 0.00 0.00 0.00 4.30
116 117 2.538939 GCACGAAACGAAATATGAGGGC 60.539 50.000 0.00 0.00 0.00 5.19
117 118 2.031683 CACGAAACGAAATATGAGGGCC 59.968 50.000 0.00 0.00 0.00 5.80
118 119 1.602377 CGAAACGAAATATGAGGGCCC 59.398 52.381 16.46 16.46 0.00 5.80
119 120 1.602377 GAAACGAAATATGAGGGCCCG 59.398 52.381 18.44 2.99 0.00 6.13
120 121 0.544697 AACGAAATATGAGGGCCCGT 59.455 50.000 18.44 9.55 0.00 5.28
121 122 0.106149 ACGAAATATGAGGGCCCGTC 59.894 55.000 18.44 15.04 0.00 4.79
122 123 0.602905 CGAAATATGAGGGCCCGTCC 60.603 60.000 18.44 10.69 0.00 4.79
123 124 0.602905 GAAATATGAGGGCCCGTCCG 60.603 60.000 18.44 0.00 34.94 4.79
124 125 2.052047 AAATATGAGGGCCCGTCCGG 62.052 60.000 18.44 0.00 34.94 5.14
125 126 2.957902 AATATGAGGGCCCGTCCGGA 62.958 60.000 18.44 0.00 37.50 5.14
126 127 2.748641 ATATGAGGGCCCGTCCGGAT 62.749 60.000 18.44 3.45 37.50 4.18
133 134 3.496131 CCCGTCCGGATGCGTTTG 61.496 66.667 18.81 4.00 37.50 2.93
134 135 4.160635 CCGTCCGGATGCGTTTGC 62.161 66.667 18.81 0.00 38.61 3.68
176 177 2.750237 GCGTTTGAAGGGCCGGAT 60.750 61.111 5.05 0.00 0.00 4.18
177 178 2.340328 GCGTTTGAAGGGCCGGATT 61.340 57.895 5.05 0.00 0.00 3.01
178 179 1.873270 GCGTTTGAAGGGCCGGATTT 61.873 55.000 5.05 0.00 0.00 2.17
179 180 0.109319 CGTTTGAAGGGCCGGATTTG 60.109 55.000 5.05 0.00 0.00 2.32
180 181 0.389817 GTTTGAAGGGCCGGATTTGC 60.390 55.000 5.05 0.00 0.00 3.68
187 188 2.885113 GCCGGATTTGCCAAGTCC 59.115 61.111 5.05 8.84 35.94 3.85
188 189 2.710902 GCCGGATTTGCCAAGTCCC 61.711 63.158 12.80 0.00 35.94 4.46
189 190 2.406616 CCGGATTTGCCAAGTCCCG 61.407 63.158 12.80 9.68 35.94 5.14
190 191 2.885113 GGATTTGCCAAGTCCCGC 59.115 61.111 7.72 0.00 36.34 6.13
191 192 1.678970 GGATTTGCCAAGTCCCGCT 60.679 57.895 7.72 0.00 36.34 5.52
192 193 1.250840 GGATTTGCCAAGTCCCGCTT 61.251 55.000 7.72 0.00 38.08 4.68
193 194 0.603065 GATTTGCCAAGTCCCGCTTT 59.397 50.000 0.00 0.00 34.69 3.51
194 195 1.816224 GATTTGCCAAGTCCCGCTTTA 59.184 47.619 0.00 0.00 34.69 1.85
195 196 1.243902 TTTGCCAAGTCCCGCTTTAG 58.756 50.000 0.00 0.00 34.69 1.85
196 197 0.398696 TTGCCAAGTCCCGCTTTAGA 59.601 50.000 0.00 0.00 34.69 2.10
197 198 0.618458 TGCCAAGTCCCGCTTTAGAT 59.382 50.000 0.00 0.00 34.69 1.98
198 199 1.017387 GCCAAGTCCCGCTTTAGATG 58.983 55.000 0.00 0.00 34.69 2.90
199 200 1.017387 CCAAGTCCCGCTTTAGATGC 58.983 55.000 0.00 0.00 34.69 3.91
200 201 1.407437 CCAAGTCCCGCTTTAGATGCT 60.407 52.381 0.00 0.00 34.69 3.79
201 202 1.936547 CAAGTCCCGCTTTAGATGCTC 59.063 52.381 0.00 0.00 34.69 4.26
202 203 1.490574 AGTCCCGCTTTAGATGCTCT 58.509 50.000 0.00 0.00 0.00 4.09
203 204 1.834263 AGTCCCGCTTTAGATGCTCTT 59.166 47.619 0.00 0.00 0.00 2.85
204 205 3.031736 AGTCCCGCTTTAGATGCTCTTA 58.968 45.455 0.00 0.00 0.00 2.10
205 206 3.124560 GTCCCGCTTTAGATGCTCTTAC 58.875 50.000 0.00 0.00 0.00 2.34
206 207 2.102588 TCCCGCTTTAGATGCTCTTACC 59.897 50.000 0.00 0.00 0.00 2.85
207 208 2.158957 CCCGCTTTAGATGCTCTTACCA 60.159 50.000 0.00 0.00 0.00 3.25
208 209 3.531538 CCGCTTTAGATGCTCTTACCAA 58.468 45.455 0.00 0.00 0.00 3.67
209 210 3.309954 CCGCTTTAGATGCTCTTACCAAC 59.690 47.826 0.00 0.00 0.00 3.77
210 211 4.184629 CGCTTTAGATGCTCTTACCAACT 58.815 43.478 0.00 0.00 0.00 3.16
211 212 5.348986 CGCTTTAGATGCTCTTACCAACTA 58.651 41.667 0.00 0.00 0.00 2.24
212 213 5.232414 CGCTTTAGATGCTCTTACCAACTAC 59.768 44.000 0.00 0.00 0.00 2.73
213 214 6.106673 GCTTTAGATGCTCTTACCAACTACA 58.893 40.000 0.00 0.00 0.00 2.74
214 215 6.763610 GCTTTAGATGCTCTTACCAACTACAT 59.236 38.462 0.00 0.00 0.00 2.29
215 216 7.254590 GCTTTAGATGCTCTTACCAACTACATG 60.255 40.741 0.00 0.00 0.00 3.21
216 217 5.683876 AGATGCTCTTACCAACTACATGT 57.316 39.130 2.69 2.69 0.00 3.21
217 218 6.791867 AGATGCTCTTACCAACTACATGTA 57.208 37.500 5.25 5.25 0.00 2.29
218 219 7.366847 AGATGCTCTTACCAACTACATGTAT 57.633 36.000 5.91 0.00 0.00 2.29
219 220 7.212976 AGATGCTCTTACCAACTACATGTATG 58.787 38.462 5.91 2.68 0.00 2.39
220 221 6.294361 TGCTCTTACCAACTACATGTATGT 57.706 37.500 5.91 4.22 44.48 2.29
221 222 6.338146 TGCTCTTACCAACTACATGTATGTC 58.662 40.000 5.91 0.00 41.97 3.06
222 223 6.154534 TGCTCTTACCAACTACATGTATGTCT 59.845 38.462 5.91 0.00 41.97 3.41
223 224 6.477033 GCTCTTACCAACTACATGTATGTCTG 59.523 42.308 5.91 7.85 41.97 3.51
224 225 7.630728 GCTCTTACCAACTACATGTATGTCTGA 60.631 40.741 5.91 3.81 41.97 3.27
225 226 8.306313 TCTTACCAACTACATGTATGTCTGAT 57.694 34.615 5.91 0.00 41.97 2.90
226 227 8.758829 TCTTACCAACTACATGTATGTCTGATT 58.241 33.333 5.91 3.22 41.97 2.57
227 228 9.383519 CTTACCAACTACATGTATGTCTGATTT 57.616 33.333 5.91 0.00 41.97 2.17
230 231 9.330063 ACCAACTACATGTATGTCTGATTTATG 57.670 33.333 5.91 0.69 41.97 1.90
231 232 9.330063 CCAACTACATGTATGTCTGATTTATGT 57.670 33.333 5.91 0.00 41.97 2.29
233 234 8.370493 ACTACATGTATGTCTGATTTATGTGC 57.630 34.615 5.91 0.00 41.97 4.57
234 235 8.206867 ACTACATGTATGTCTGATTTATGTGCT 58.793 33.333 5.91 0.00 41.97 4.40
235 236 9.696917 CTACATGTATGTCTGATTTATGTGCTA 57.303 33.333 5.91 0.00 41.97 3.49
236 237 8.370493 ACATGTATGTCTGATTTATGTGCTAC 57.630 34.615 0.00 0.00 35.87 3.58
237 238 8.206867 ACATGTATGTCTGATTTATGTGCTACT 58.793 33.333 0.00 0.00 35.87 2.57
238 239 9.696917 CATGTATGTCTGATTTATGTGCTACTA 57.303 33.333 0.00 0.00 0.00 1.82
295 296 8.903820 TCATATTGATATAGGTGAGTGATACCG 58.096 37.037 0.00 0.00 43.06 4.02
296 297 8.903820 CATATTGATATAGGTGAGTGATACCGA 58.096 37.037 0.00 0.00 43.06 4.69
297 298 6.819397 TTGATATAGGTGAGTGATACCGAG 57.181 41.667 0.00 0.00 43.06 4.63
298 299 5.877491 TGATATAGGTGAGTGATACCGAGT 58.123 41.667 0.00 0.00 43.06 4.18
299 300 7.012661 TGATATAGGTGAGTGATACCGAGTA 57.987 40.000 0.00 0.00 43.06 2.59
300 301 7.631007 TGATATAGGTGAGTGATACCGAGTAT 58.369 38.462 0.00 0.00 43.06 2.12
301 302 7.769507 TGATATAGGTGAGTGATACCGAGTATC 59.230 40.741 13.85 13.85 43.49 2.24
312 313 6.755461 GATACCGAGTATCAAACATGACAG 57.245 41.667 15.14 0.00 42.93 3.51
313 314 4.801330 ACCGAGTATCAAACATGACAGA 57.199 40.909 0.00 0.00 33.17 3.41
314 315 5.344743 ACCGAGTATCAAACATGACAGAT 57.655 39.130 0.00 1.73 33.17 2.90
315 316 5.111989 ACCGAGTATCAAACATGACAGATG 58.888 41.667 0.00 0.00 33.17 2.90
316 317 5.105351 ACCGAGTATCAAACATGACAGATGA 60.105 40.000 0.00 0.00 33.17 2.92
317 318 5.812127 CCGAGTATCAAACATGACAGATGAA 59.188 40.000 0.00 0.00 33.17 2.57
318 319 6.481313 CCGAGTATCAAACATGACAGATGAAT 59.519 38.462 0.00 0.00 33.17 2.57
319 320 7.342942 CGAGTATCAAACATGACAGATGAATG 58.657 38.462 0.00 0.00 33.17 2.67
320 321 7.010830 CGAGTATCAAACATGACAGATGAATGT 59.989 37.037 0.00 0.00 33.37 2.71
321 322 9.317936 GAGTATCAAACATGACAGATGAATGTA 57.682 33.333 0.00 0.00 32.30 2.29
322 323 9.102757 AGTATCAAACATGACAGATGAATGTAC 57.897 33.333 0.00 0.00 33.48 2.90
323 324 6.741992 TCAAACATGACAGATGAATGTACC 57.258 37.500 0.00 0.00 33.48 3.34
324 325 5.351189 TCAAACATGACAGATGAATGTACCG 59.649 40.000 0.00 0.00 33.48 4.02
325 326 4.736126 ACATGACAGATGAATGTACCGA 57.264 40.909 0.00 0.00 32.86 4.69
326 327 4.686972 ACATGACAGATGAATGTACCGAG 58.313 43.478 0.00 0.00 32.86 4.63
327 328 4.402474 ACATGACAGATGAATGTACCGAGA 59.598 41.667 0.00 0.00 32.86 4.04
328 329 5.069648 ACATGACAGATGAATGTACCGAGAT 59.930 40.000 0.00 0.00 32.86 2.75
329 330 6.265422 ACATGACAGATGAATGTACCGAGATA 59.735 38.462 0.00 0.00 32.86 1.98
330 331 6.709018 TGACAGATGAATGTACCGAGATAA 57.291 37.500 0.00 0.00 32.25 1.75
331 332 6.739112 TGACAGATGAATGTACCGAGATAAG 58.261 40.000 0.00 0.00 32.25 1.73
332 333 6.546034 TGACAGATGAATGTACCGAGATAAGA 59.454 38.462 0.00 0.00 32.25 2.10
333 334 7.231519 TGACAGATGAATGTACCGAGATAAGAT 59.768 37.037 0.00 0.00 32.25 2.40
334 335 8.637196 ACAGATGAATGTACCGAGATAAGATA 57.363 34.615 0.00 0.00 0.00 1.98
335 336 9.078990 ACAGATGAATGTACCGAGATAAGATAA 57.921 33.333 0.00 0.00 0.00 1.75
336 337 9.566530 CAGATGAATGTACCGAGATAAGATAAG 57.433 37.037 0.00 0.00 0.00 1.73
337 338 9.303116 AGATGAATGTACCGAGATAAGATAAGT 57.697 33.333 0.00 0.00 0.00 2.24
338 339 9.347934 GATGAATGTACCGAGATAAGATAAGTG 57.652 37.037 0.00 0.00 0.00 3.16
339 340 7.145985 TGAATGTACCGAGATAAGATAAGTGC 58.854 38.462 0.00 0.00 0.00 4.40
340 341 6.650427 ATGTACCGAGATAAGATAAGTGCA 57.350 37.500 0.00 0.00 0.00 4.57
341 342 6.650427 TGTACCGAGATAAGATAAGTGCAT 57.350 37.500 0.00 0.00 0.00 3.96
342 343 6.447162 TGTACCGAGATAAGATAAGTGCATG 58.553 40.000 0.00 0.00 0.00 4.06
343 344 5.537300 ACCGAGATAAGATAAGTGCATGT 57.463 39.130 0.00 0.00 0.00 3.21
344 345 6.650427 ACCGAGATAAGATAAGTGCATGTA 57.350 37.500 0.00 0.00 0.00 2.29
345 346 6.682746 ACCGAGATAAGATAAGTGCATGTAG 58.317 40.000 0.00 0.00 0.00 2.74
346 347 6.096036 CCGAGATAAGATAAGTGCATGTAGG 58.904 44.000 0.00 0.00 0.00 3.18
347 348 5.574830 CGAGATAAGATAAGTGCATGTAGGC 59.425 44.000 0.00 0.00 0.00 3.93
348 349 5.799213 AGATAAGATAAGTGCATGTAGGCC 58.201 41.667 0.00 0.00 0.00 5.19
349 350 2.938956 AGATAAGTGCATGTAGGCCC 57.061 50.000 0.00 0.00 0.00 5.80
350 351 2.412591 AGATAAGTGCATGTAGGCCCT 58.587 47.619 0.00 0.00 0.00 5.19
351 352 2.370189 AGATAAGTGCATGTAGGCCCTC 59.630 50.000 0.00 0.00 0.00 4.30
352 353 1.578897 TAAGTGCATGTAGGCCCTCA 58.421 50.000 0.00 0.00 0.00 3.86
353 354 0.254178 AAGTGCATGTAGGCCCTCAG 59.746 55.000 0.00 0.00 0.00 3.35
354 355 1.153086 GTGCATGTAGGCCCTCAGG 60.153 63.158 0.00 1.47 0.00 3.86
355 356 1.616327 TGCATGTAGGCCCTCAGGT 60.616 57.895 0.00 0.00 34.57 4.00
356 357 1.153086 GCATGTAGGCCCTCAGGTG 60.153 63.158 0.00 0.00 34.57 4.00
357 358 1.528824 CATGTAGGCCCTCAGGTGG 59.471 63.158 0.00 0.00 34.57 4.61
374 375 4.537433 GCGCCCCAGCCTCTAGTG 62.537 72.222 0.00 0.00 34.57 2.74
375 376 4.537433 CGCCCCAGCCTCTAGTGC 62.537 72.222 0.00 0.00 34.57 4.40
376 377 3.402681 GCCCCAGCCTCTAGTGCA 61.403 66.667 9.17 0.00 0.00 4.57
377 378 2.750657 GCCCCAGCCTCTAGTGCAT 61.751 63.158 9.17 0.00 0.00 3.96
378 379 1.410850 GCCCCAGCCTCTAGTGCATA 61.411 60.000 9.17 0.00 0.00 3.14
379 380 0.683973 CCCCAGCCTCTAGTGCATAG 59.316 60.000 9.17 0.00 0.00 2.23
380 381 1.418334 CCCAGCCTCTAGTGCATAGT 58.582 55.000 9.17 0.00 32.85 2.12
381 382 1.342819 CCCAGCCTCTAGTGCATAGTC 59.657 57.143 9.17 0.00 32.85 2.59
382 383 2.034878 CCAGCCTCTAGTGCATAGTCA 58.965 52.381 9.17 0.00 32.85 3.41
383 384 2.632028 CCAGCCTCTAGTGCATAGTCAT 59.368 50.000 9.17 0.00 32.85 3.06
384 385 3.554544 CCAGCCTCTAGTGCATAGTCATG 60.555 52.174 9.17 0.00 32.85 3.07
385 386 2.632028 AGCCTCTAGTGCATAGTCATGG 59.368 50.000 9.17 0.00 32.85 3.66
386 387 2.630098 GCCTCTAGTGCATAGTCATGGA 59.370 50.000 0.00 0.00 32.85 3.41
387 388 3.305950 GCCTCTAGTGCATAGTCATGGAG 60.306 52.174 0.00 0.00 32.55 3.86
388 389 4.148079 CCTCTAGTGCATAGTCATGGAGA 58.852 47.826 0.00 0.00 32.55 3.71
389 390 4.771577 CCTCTAGTGCATAGTCATGGAGAT 59.228 45.833 0.00 0.00 32.55 2.75
390 391 5.336610 CCTCTAGTGCATAGTCATGGAGATG 60.337 48.000 0.00 0.00 32.55 2.90
391 392 3.766068 AGTGCATAGTCATGGAGATGG 57.234 47.619 0.00 0.00 32.55 3.51
392 393 3.311990 AGTGCATAGTCATGGAGATGGA 58.688 45.455 0.00 0.00 32.55 3.41
393 394 3.713248 AGTGCATAGTCATGGAGATGGAA 59.287 43.478 0.00 0.00 32.55 3.53
394 395 4.164796 AGTGCATAGTCATGGAGATGGAAA 59.835 41.667 0.00 0.00 32.55 3.13
395 396 5.068636 GTGCATAGTCATGGAGATGGAAAT 58.931 41.667 0.00 0.00 32.55 2.17
396 397 5.533903 GTGCATAGTCATGGAGATGGAAATT 59.466 40.000 0.00 0.00 32.55 1.82
397 398 5.533528 TGCATAGTCATGGAGATGGAAATTG 59.466 40.000 0.00 0.00 32.36 2.32
398 399 5.564259 GCATAGTCATGGAGATGGAAATTGC 60.564 44.000 0.00 0.00 32.36 3.56
399 400 3.972133 AGTCATGGAGATGGAAATTGCA 58.028 40.909 0.00 0.00 0.00 4.08
400 401 4.346730 AGTCATGGAGATGGAAATTGCAA 58.653 39.130 0.00 0.00 0.00 4.08
401 402 4.960469 AGTCATGGAGATGGAAATTGCAAT 59.040 37.500 5.99 5.99 0.00 3.56
402 403 5.047847 GTCATGGAGATGGAAATTGCAATG 58.952 41.667 13.82 0.00 0.00 2.82
403 404 3.530265 TGGAGATGGAAATTGCAATGC 57.470 42.857 13.82 8.32 0.00 3.56
404 405 3.101437 TGGAGATGGAAATTGCAATGCT 58.899 40.909 13.82 3.06 0.00 3.79
405 406 3.516300 TGGAGATGGAAATTGCAATGCTT 59.484 39.130 13.82 4.16 0.00 3.91
406 407 4.710865 TGGAGATGGAAATTGCAATGCTTA 59.289 37.500 13.82 0.87 0.00 3.09
407 408 5.364446 TGGAGATGGAAATTGCAATGCTTAT 59.636 36.000 13.82 5.99 0.00 1.73
408 409 5.924825 GGAGATGGAAATTGCAATGCTTATC 59.075 40.000 13.82 14.17 0.00 1.75
409 410 6.461927 GGAGATGGAAATTGCAATGCTTATCA 60.462 38.462 13.82 7.17 0.00 2.15
410 411 7.062749 AGATGGAAATTGCAATGCTTATCAT 57.937 32.000 13.82 11.21 36.87 2.45
411 412 8.185506 AGATGGAAATTGCAATGCTTATCATA 57.814 30.769 13.82 1.52 34.33 2.15
412 413 8.304596 AGATGGAAATTGCAATGCTTATCATAG 58.695 33.333 13.82 0.00 34.33 2.23
413 414 7.585579 TGGAAATTGCAATGCTTATCATAGA 57.414 32.000 13.82 0.00 34.33 1.98
414 415 8.009622 TGGAAATTGCAATGCTTATCATAGAA 57.990 30.769 13.82 0.00 34.33 2.10
415 416 7.922278 TGGAAATTGCAATGCTTATCATAGAAC 59.078 33.333 13.82 0.00 34.33 3.01
416 417 8.139989 GGAAATTGCAATGCTTATCATAGAACT 58.860 33.333 13.82 0.00 34.33 3.01
427 428 8.840321 TGCTTATCATAGAACTAATTTTCAGCC 58.160 33.333 0.00 0.00 0.00 4.85
428 429 8.840321 GCTTATCATAGAACTAATTTTCAGCCA 58.160 33.333 0.00 0.00 0.00 4.75
433 434 9.295825 TCATAGAACTAATTTTCAGCCAAAAGA 57.704 29.630 0.00 0.00 37.40 2.52
434 435 9.912634 CATAGAACTAATTTTCAGCCAAAAGAA 57.087 29.630 0.00 0.00 37.40 2.52
462 463 6.930068 TTATAATTAGGGTGAGTCTAGGGC 57.070 41.667 0.00 0.00 0.00 5.19
463 464 2.868964 ATTAGGGTGAGTCTAGGGCA 57.131 50.000 0.00 0.00 0.00 5.36
464 465 1.861982 TTAGGGTGAGTCTAGGGCAC 58.138 55.000 0.00 0.00 0.00 5.01
465 466 0.708209 TAGGGTGAGTCTAGGGCACA 59.292 55.000 10.98 0.00 34.33 4.57
466 467 0.043334 AGGGTGAGTCTAGGGCACAT 59.957 55.000 10.98 0.00 34.33 3.21
467 468 0.466124 GGGTGAGTCTAGGGCACATC 59.534 60.000 10.98 1.73 34.33 3.06
468 469 1.490574 GGTGAGTCTAGGGCACATCT 58.509 55.000 10.98 0.00 34.33 2.90
469 470 2.667470 GGTGAGTCTAGGGCACATCTA 58.333 52.381 10.98 0.00 34.33 1.98
470 471 2.625790 GGTGAGTCTAGGGCACATCTAG 59.374 54.545 10.98 0.00 36.46 2.43
471 472 3.556999 GTGAGTCTAGGGCACATCTAGA 58.443 50.000 0.00 0.00 40.38 2.43
472 473 4.148838 GTGAGTCTAGGGCACATCTAGAT 58.851 47.826 0.00 0.00 43.25 1.98
473 474 5.317808 GTGAGTCTAGGGCACATCTAGATA 58.682 45.833 4.54 0.00 43.25 1.98
474 475 5.949354 GTGAGTCTAGGGCACATCTAGATAT 59.051 44.000 4.54 0.00 43.25 1.63
475 476 5.948758 TGAGTCTAGGGCACATCTAGATATG 59.051 44.000 6.64 6.64 43.25 1.78
476 477 4.709397 AGTCTAGGGCACATCTAGATATGC 59.291 45.833 24.83 24.83 43.25 3.14
477 478 4.709397 GTCTAGGGCACATCTAGATATGCT 59.291 45.833 29.70 17.06 43.25 3.79
478 479 5.888724 GTCTAGGGCACATCTAGATATGCTA 59.111 44.000 29.70 17.25 43.25 3.49
479 480 6.549364 GTCTAGGGCACATCTAGATATGCTAT 59.451 42.308 29.70 21.71 43.25 2.97
480 481 7.721842 GTCTAGGGCACATCTAGATATGCTATA 59.278 40.741 29.70 21.67 43.25 1.31
481 482 6.975196 AGGGCACATCTAGATATGCTATAG 57.025 41.667 29.70 8.18 40.81 1.31
482 483 6.439487 AGGGCACATCTAGATATGCTATAGT 58.561 40.000 29.70 11.62 40.81 2.12
483 484 6.900186 AGGGCACATCTAGATATGCTATAGTT 59.100 38.462 29.70 10.86 40.81 2.24
484 485 8.061920 AGGGCACATCTAGATATGCTATAGTTA 58.938 37.037 29.70 0.00 40.81 2.24
485 486 8.865090 GGGCACATCTAGATATGCTATAGTTAT 58.135 37.037 29.70 0.00 40.81 1.89
499 500 8.593492 TGCTATAGTTATTGCACATCTAAGTG 57.407 34.615 0.84 0.00 38.99 3.16
500 501 8.421002 TGCTATAGTTATTGCACATCTAAGTGA 58.579 33.333 0.84 0.00 42.05 3.41
501 502 8.920665 GCTATAGTTATTGCACATCTAAGTGAG 58.079 37.037 0.84 0.00 42.05 3.51
502 503 9.973450 CTATAGTTATTGCACATCTAAGTGAGT 57.027 33.333 0.00 0.00 42.05 3.41
503 504 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
504 505 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
505 506 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
506 507 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
507 508 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
508 509 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
509 510 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
510 511 5.997129 TGCACATCTAAGTGAGTGAATCAAA 59.003 36.000 0.00 0.00 42.05 2.69
511 512 6.073058 TGCACATCTAAGTGAGTGAATCAAAC 60.073 38.462 0.00 0.00 42.05 2.93
512 513 6.073058 GCACATCTAAGTGAGTGAATCAAACA 60.073 38.462 0.00 0.00 42.05 2.83
513 514 7.361542 GCACATCTAAGTGAGTGAATCAAACAT 60.362 37.037 0.00 0.00 42.05 2.71
514 515 9.154847 CACATCTAAGTGAGTGAATCAAACATA 57.845 33.333 0.00 0.00 42.05 2.29
515 516 9.725019 ACATCTAAGTGAGTGAATCAAACATAA 57.275 29.630 0.00 0.00 40.43 1.90
521 522 8.463930 AGTGAGTGAATCAAACATAAAAAGGA 57.536 30.769 0.00 0.00 40.43 3.36
522 523 8.912988 AGTGAGTGAATCAAACATAAAAAGGAA 58.087 29.630 0.00 0.00 40.43 3.36
523 524 9.528018 GTGAGTGAATCAAACATAAAAAGGAAA 57.472 29.630 0.00 0.00 40.43 3.13
559 560 5.968387 AAAATATCCACACGAATCTCGAC 57.032 39.130 2.59 0.00 43.74 4.20
560 561 2.750301 TATCCACACGAATCTCGACG 57.250 50.000 2.59 0.00 43.74 5.12
561 562 0.809385 ATCCACACGAATCTCGACGT 59.191 50.000 2.59 0.00 43.74 4.34
562 563 1.441738 TCCACACGAATCTCGACGTA 58.558 50.000 2.59 0.00 43.74 3.57
563 564 1.805943 TCCACACGAATCTCGACGTAA 59.194 47.619 2.59 0.00 43.74 3.18
564 565 2.226200 TCCACACGAATCTCGACGTAAA 59.774 45.455 2.59 0.00 43.74 2.01
565 566 2.981805 CCACACGAATCTCGACGTAAAA 59.018 45.455 2.59 0.00 43.74 1.52
566 567 3.611113 CCACACGAATCTCGACGTAAAAT 59.389 43.478 2.59 0.00 43.74 1.82
567 568 4.259292 CCACACGAATCTCGACGTAAAATC 60.259 45.833 2.59 0.00 43.74 2.17
568 569 4.322539 CACACGAATCTCGACGTAAAATCA 59.677 41.667 2.59 0.00 43.74 2.57
569 570 4.919168 ACACGAATCTCGACGTAAAATCAA 59.081 37.500 2.59 0.00 43.74 2.57
570 571 5.575606 ACACGAATCTCGACGTAAAATCAAT 59.424 36.000 2.59 0.00 43.74 2.57
571 572 6.114288 CACGAATCTCGACGTAAAATCAATC 58.886 40.000 2.59 0.00 43.74 2.67
572 573 5.803461 ACGAATCTCGACGTAAAATCAATCA 59.197 36.000 2.59 0.00 43.74 2.57
573 574 6.114288 CGAATCTCGACGTAAAATCAATCAC 58.886 40.000 0.00 0.00 43.74 3.06
574 575 6.237463 CGAATCTCGACGTAAAATCAATCACA 60.237 38.462 0.00 0.00 43.74 3.58
575 576 7.515215 CGAATCTCGACGTAAAATCAATCACAT 60.515 37.037 0.00 0.00 43.74 3.21
576 577 8.642908 AATCTCGACGTAAAATCAATCACATA 57.357 30.769 0.00 0.00 0.00 2.29
577 578 8.818141 ATCTCGACGTAAAATCAATCACATAT 57.182 30.769 0.00 0.00 0.00 1.78
578 579 8.061125 TCTCGACGTAAAATCAATCACATATG 57.939 34.615 0.00 0.00 0.00 1.78
579 580 7.918562 TCTCGACGTAAAATCAATCACATATGA 59.081 33.333 10.38 0.00 39.83 2.15
580 581 7.837505 TCGACGTAAAATCAATCACATATGAC 58.162 34.615 10.38 0.00 37.79 3.06
581 582 7.704899 TCGACGTAAAATCAATCACATATGACT 59.295 33.333 10.38 0.00 37.79 3.41
582 583 8.328146 CGACGTAAAATCAATCACATATGACTT 58.672 33.333 10.38 0.00 37.79 3.01
587 588 8.469309 AAAATCAATCACATATGACTTAGGGG 57.531 34.615 10.38 0.00 37.79 4.79
588 589 5.567037 TCAATCACATATGACTTAGGGGG 57.433 43.478 10.38 0.00 37.79 5.40
589 590 4.975147 TCAATCACATATGACTTAGGGGGT 59.025 41.667 10.38 0.00 37.79 4.95
590 591 4.982241 ATCACATATGACTTAGGGGGTG 57.018 45.455 10.38 0.00 37.79 4.61
591 592 3.731431 TCACATATGACTTAGGGGGTGT 58.269 45.455 10.38 0.00 0.00 4.16
592 593 4.108570 TCACATATGACTTAGGGGGTGTT 58.891 43.478 10.38 0.00 0.00 3.32
593 594 4.538490 TCACATATGACTTAGGGGGTGTTT 59.462 41.667 10.38 0.00 0.00 2.83
594 595 4.640201 CACATATGACTTAGGGGGTGTTTG 59.360 45.833 10.38 0.00 0.00 2.93
595 596 2.899303 ATGACTTAGGGGGTGTTTGG 57.101 50.000 0.00 0.00 0.00 3.28
596 597 1.525175 TGACTTAGGGGGTGTTTGGT 58.475 50.000 0.00 0.00 0.00 3.67
597 598 1.854280 TGACTTAGGGGGTGTTTGGTT 59.146 47.619 0.00 0.00 0.00 3.67
598 599 2.158579 TGACTTAGGGGGTGTTTGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
599 600 1.854280 ACTTAGGGGGTGTTTGGTTCA 59.146 47.619 0.00 0.00 0.00 3.18
600 601 2.158519 ACTTAGGGGGTGTTTGGTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
601 602 0.774908 TAGGGGGTGTTTGGTTCAGG 59.225 55.000 0.00 0.00 0.00 3.86
602 603 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
603 604 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
604 605 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
605 606 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
606 607 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
607 608 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
608 609 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
609 610 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
610 611 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
611 612 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
612 613 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
613 614 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
633 634 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
634 635 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
635 636 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
636 637 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
637 638 5.484290 CCCAGAGACTAGAAAAAGTCCCTAA 59.516 44.000 0.00 0.00 45.86 2.69
638 639 6.013639 CCCAGAGACTAGAAAAAGTCCCTAAA 60.014 42.308 0.00 0.00 45.86 1.85
639 640 7.450903 CCAGAGACTAGAAAAAGTCCCTAAAA 58.549 38.462 0.00 0.00 45.86 1.52
640 641 7.937394 CCAGAGACTAGAAAAAGTCCCTAAAAA 59.063 37.037 0.00 0.00 45.86 1.94
641 642 8.994170 CAGAGACTAGAAAAAGTCCCTAAAAAG 58.006 37.037 0.00 0.00 45.86 2.27
642 643 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
643 644 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
644 645 7.937942 AGACTAGAAAAAGTCCCTAAAAAGTCC 59.062 37.037 0.00 0.00 45.86 3.85
645 646 7.002879 ACTAGAAAAAGTCCCTAAAAAGTCCC 58.997 38.462 0.00 0.00 0.00 4.46
646 647 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
647 648 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
648 649 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
649 650 5.516059 AAAGTCCCTAAAAAGTCCCTAGG 57.484 43.478 0.06 0.06 33.30 3.02
650 651 4.431158 AGTCCCTAAAAAGTCCCTAGGA 57.569 45.455 11.48 0.00 35.17 2.94
651 652 4.771338 AGTCCCTAAAAAGTCCCTAGGAA 58.229 43.478 11.48 0.00 35.17 3.36
652 653 4.535294 AGTCCCTAAAAAGTCCCTAGGAAC 59.465 45.833 11.48 0.00 35.17 3.62
653 654 3.848377 TCCCTAAAAAGTCCCTAGGAACC 59.152 47.826 11.48 0.00 35.17 3.62
654 655 3.590182 CCCTAAAAAGTCCCTAGGAACCA 59.410 47.826 11.48 0.00 35.17 3.67
655 656 4.043686 CCCTAAAAAGTCCCTAGGAACCAA 59.956 45.833 11.48 0.00 35.17 3.67
656 657 5.458508 CCCTAAAAAGTCCCTAGGAACCAAA 60.459 44.000 11.48 0.00 35.17 3.28
657 658 5.475909 CCTAAAAAGTCCCTAGGAACCAAAC 59.524 44.000 11.48 0.00 35.17 2.93
658 659 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
659 660 0.981943 AGTCCCTAGGAACCAAACGG 59.018 55.000 11.48 0.00 31.38 4.44
660 661 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.000 11.48 0.00 44.81 5.28
661 662 0.178897 TCCCTAGGAACCAAACGGGA 60.179 55.000 11.48 0.00 41.15 5.14
662 663 0.252197 CCCTAGGAACCAAACGGGAG 59.748 60.000 11.48 0.00 41.15 4.30
663 664 0.252197 CCTAGGAACCAAACGGGAGG 59.748 60.000 1.05 0.00 41.15 4.30
664 665 0.252197 CTAGGAACCAAACGGGAGGG 59.748 60.000 0.00 0.00 41.15 4.30
665 666 0.178897 TAGGAACCAAACGGGAGGGA 60.179 55.000 0.00 0.00 41.15 4.20
666 667 1.303074 GGAACCAAACGGGAGGGAC 60.303 63.158 0.00 0.00 41.15 4.46
668 669 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
669 670 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
670 671 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
671 672 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
695 696 9.862149 TTTTTACAGGGATTAGAAAAAGACTCT 57.138 29.630 0.00 0.00 0.00 3.24
697 698 9.939802 TTTACAGGGATTAGAAAAAGACTCTAC 57.060 33.333 0.00 0.00 0.00 2.59
698 699 7.800300 ACAGGGATTAGAAAAAGACTCTACT 57.200 36.000 0.00 0.00 0.00 2.57
699 700 8.896722 ACAGGGATTAGAAAAAGACTCTACTA 57.103 34.615 0.00 0.00 0.00 1.82
700 701 8.973182 ACAGGGATTAGAAAAAGACTCTACTAG 58.027 37.037 0.00 0.00 0.00 2.57
701 702 9.191479 CAGGGATTAGAAAAAGACTCTACTAGA 57.809 37.037 0.00 0.00 0.00 2.43
703 704 9.411189 GGGATTAGAAAAAGACTCTACTAGAGA 57.589 37.037 18.41 0.00 45.07 3.10
754 755 3.938109 GTCCTGGGACTTCTGAACC 57.062 57.895 12.09 0.00 41.57 3.62
755 756 1.056660 GTCCTGGGACTTCTGAACCA 58.943 55.000 12.09 0.00 41.57 3.67
756 757 1.420138 GTCCTGGGACTTCTGAACCAA 59.580 52.381 12.09 0.00 41.57 3.67
757 758 2.131854 TCCTGGGACTTCTGAACCAAA 58.868 47.619 0.00 0.00 31.63 3.28
758 759 2.158667 TCCTGGGACTTCTGAACCAAAC 60.159 50.000 0.00 0.00 31.63 2.93
759 760 2.422803 CCTGGGACTTCTGAACCAAACA 60.423 50.000 0.67 0.00 31.63 2.83
760 761 2.880890 CTGGGACTTCTGAACCAAACAG 59.119 50.000 0.67 0.00 36.80 3.16
761 762 1.609072 GGGACTTCTGAACCAAACAGC 59.391 52.381 0.00 0.00 35.61 4.40
762 763 1.609072 GGACTTCTGAACCAAACAGCC 59.391 52.381 0.00 0.00 35.61 4.85
763 764 1.609072 GACTTCTGAACCAAACAGCCC 59.391 52.381 0.00 0.00 35.61 5.19
764 765 0.961753 CTTCTGAACCAAACAGCCCC 59.038 55.000 0.00 0.00 35.61 5.80
765 766 0.555769 TTCTGAACCAAACAGCCCCT 59.444 50.000 0.00 0.00 35.61 4.79
766 767 0.555769 TCTGAACCAAACAGCCCCTT 59.444 50.000 0.00 0.00 35.61 3.95
767 768 1.777878 TCTGAACCAAACAGCCCCTTA 59.222 47.619 0.00 0.00 35.61 2.69
768 769 2.162681 CTGAACCAAACAGCCCCTTAG 58.837 52.381 0.00 0.00 0.00 2.18
769 770 1.777878 TGAACCAAACAGCCCCTTAGA 59.222 47.619 0.00 0.00 0.00 2.10
770 771 2.378547 TGAACCAAACAGCCCCTTAGAT 59.621 45.455 0.00 0.00 0.00 1.98
771 772 2.514458 ACCAAACAGCCCCTTAGATG 57.486 50.000 0.00 0.00 0.00 2.90
772 773 1.710809 ACCAAACAGCCCCTTAGATGT 59.289 47.619 0.00 0.00 0.00 3.06
773 774 2.094675 CCAAACAGCCCCTTAGATGTG 58.905 52.381 0.00 0.00 0.00 3.21
774 775 2.555227 CCAAACAGCCCCTTAGATGTGT 60.555 50.000 0.00 0.00 0.00 3.72
775 776 3.308117 CCAAACAGCCCCTTAGATGTGTA 60.308 47.826 0.00 0.00 0.00 2.90
776 777 4.331968 CAAACAGCCCCTTAGATGTGTAA 58.668 43.478 0.00 0.00 0.00 2.41
777 778 4.862641 AACAGCCCCTTAGATGTGTAAT 57.137 40.909 0.00 0.00 0.00 1.89
778 779 5.968676 AACAGCCCCTTAGATGTGTAATA 57.031 39.130 0.00 0.00 0.00 0.98
779 780 6.515512 AACAGCCCCTTAGATGTGTAATAT 57.484 37.500 0.00 0.00 0.00 1.28
780 781 6.115448 ACAGCCCCTTAGATGTGTAATATC 57.885 41.667 0.00 0.00 34.27 1.63
782 783 6.169094 CAGCCCCTTAGATGTGTAATATCTG 58.831 44.000 0.00 0.00 44.98 2.90
783 784 5.846714 AGCCCCTTAGATGTGTAATATCTGT 59.153 40.000 0.00 0.00 44.98 3.41
784 785 5.934625 GCCCCTTAGATGTGTAATATCTGTG 59.065 44.000 0.00 0.00 44.98 3.66
785 786 6.467677 CCCCTTAGATGTGTAATATCTGTGG 58.532 44.000 0.00 0.00 44.98 4.17
786 787 5.934625 CCCTTAGATGTGTAATATCTGTGGC 59.065 44.000 0.00 0.00 44.98 5.01
787 788 6.464322 CCCTTAGATGTGTAATATCTGTGGCA 60.464 42.308 0.00 0.00 44.98 4.92
788 789 6.425114 CCTTAGATGTGTAATATCTGTGGCAC 59.575 42.308 11.55 11.55 44.98 5.01
789 790 5.357742 AGATGTGTAATATCTGTGGCACA 57.642 39.130 20.76 20.76 43.62 4.57
790 791 5.933617 AGATGTGTAATATCTGTGGCACAT 58.066 37.500 22.35 10.08 43.62 3.21
792 793 5.357742 TGTGTAATATCTGTGGCACATCT 57.642 39.130 22.35 13.60 44.52 2.90
793 794 6.478512 TGTGTAATATCTGTGGCACATCTA 57.521 37.500 22.35 15.36 44.52 1.98
794 795 6.515832 TGTGTAATATCTGTGGCACATCTAG 58.484 40.000 22.35 9.62 44.52 2.43
795 796 6.323739 TGTGTAATATCTGTGGCACATCTAGA 59.676 38.462 22.35 15.10 44.52 2.43
796 797 7.147742 TGTGTAATATCTGTGGCACATCTAGAA 60.148 37.037 22.35 3.26 44.52 2.10
797 798 7.383572 GTGTAATATCTGTGGCACATCTAGAAG 59.616 40.741 22.35 7.64 44.52 2.85
798 799 6.737720 AATATCTGTGGCACATCTAGAAGA 57.262 37.500 22.35 13.19 44.52 2.87
799 800 6.737720 ATATCTGTGGCACATCTAGAAGAA 57.262 37.500 22.35 5.59 44.52 2.52
800 801 4.462508 TCTGTGGCACATCTAGAAGAAG 57.537 45.455 22.35 5.29 44.52 2.85
801 802 4.089361 TCTGTGGCACATCTAGAAGAAGA 58.911 43.478 22.35 7.78 44.52 2.87
802 803 4.528206 TCTGTGGCACATCTAGAAGAAGAA 59.472 41.667 22.35 0.00 44.52 2.52
803 804 4.825422 TGTGGCACATCTAGAAGAAGAAG 58.175 43.478 17.96 0.00 44.52 2.85
804 805 4.528206 TGTGGCACATCTAGAAGAAGAAGA 59.472 41.667 17.96 0.00 44.52 2.87
829 830 4.452733 GGGCCTTCGACTGTCCGG 62.453 72.222 0.84 0.00 0.00 5.14
830 831 3.692406 GGCCTTCGACTGTCCGGT 61.692 66.667 0.00 0.00 0.00 5.28
838 839 1.507174 GACTGTCCGGTTCTCCTCG 59.493 63.158 0.00 0.00 0.00 4.63
840 841 2.599281 TGTCCGGTTCTCCTCGCA 60.599 61.111 0.00 0.00 0.00 5.10
841 842 1.949847 CTGTCCGGTTCTCCTCGCAT 61.950 60.000 0.00 0.00 0.00 4.73
980 991 1.763546 CGCCAAAACCCAAACCCCAT 61.764 55.000 0.00 0.00 0.00 4.00
1241 1261 2.047274 CATGTCCCGCTTCACCGT 60.047 61.111 0.00 0.00 0.00 4.83
1957 2016 3.256631 GCAATGTGGAACCATATCATCCC 59.743 47.826 3.73 0.00 34.36 3.85
1986 2074 6.426980 TTGCAACAGCTAGTTAATCTCATG 57.573 37.500 0.00 0.00 38.74 3.07
1990 2078 6.259608 GCAACAGCTAGTTAATCTCATGATGT 59.740 38.462 0.00 0.00 38.74 3.06
2022 2111 3.575256 TCTCTTGCCATTTCTGCACATTT 59.425 39.130 0.00 0.00 38.72 2.32
2024 2113 4.059511 TCTTGCCATTTCTGCACATTTTG 58.940 39.130 0.00 0.00 38.72 2.44
2085 2177 3.533606 TCTGCAGGATTCTGACTAAGC 57.466 47.619 15.13 0.00 43.49 3.09
2107 2199 3.164576 GTGAATAGCACGCACGCA 58.835 55.556 0.00 0.00 37.83 5.24
2108 2200 1.225745 GTGAATAGCACGCACGCAC 60.226 57.895 0.00 0.00 37.83 5.34
2136 2228 2.444351 GTCATTAGTTCGCAGCAATGC 58.556 47.619 0.00 0.00 0.00 3.56
2141 2233 0.604578 AGTTCGCAGCAATGCCAATT 59.395 45.000 0.00 0.00 0.00 2.32
2148 2240 2.984471 GCAGCAATGCCAATTATCATCG 59.016 45.455 0.00 0.00 0.00 3.84
2158 2250 0.603707 ATTATCATCGCTGGCACCGG 60.604 55.000 0.00 0.00 0.00 5.28
2187 2279 1.218047 CCGAATTCCTCCGTGCTGA 59.782 57.895 0.00 0.00 0.00 4.26
2188 2280 0.391130 CCGAATTCCTCCGTGCTGAA 60.391 55.000 0.00 0.00 0.00 3.02
2191 2283 1.740025 GAATTCCTCCGTGCTGAAAGG 59.260 52.381 0.00 0.00 0.00 3.11
2192 2284 0.984230 ATTCCTCCGTGCTGAAAGGA 59.016 50.000 0.00 0.00 36.14 3.36
2193 2285 0.762418 TTCCTCCGTGCTGAAAGGAA 59.238 50.000 7.00 7.00 43.79 3.36
2194 2286 0.321671 TCCTCCGTGCTGAAAGGAAG 59.678 55.000 0.00 0.00 34.45 3.46
2195 2287 1.301677 CCTCCGTGCTGAAAGGAAGC 61.302 60.000 0.00 0.00 34.45 3.86
2199 2291 3.343972 TGCTGAAAGGAAGCACGC 58.656 55.556 0.00 0.00 45.50 5.34
2254 2346 3.630312 GGTGGCTGAGACAGTTTTTAACA 59.370 43.478 0.00 0.00 33.43 2.41
2302 2395 4.805719 GTGTTGCTCGTCATCTAATCATGA 59.194 41.667 0.00 0.00 0.00 3.07
2310 2403 3.060003 GTCATCTAATCATGACGCTGTGC 60.060 47.826 0.00 0.00 42.48 4.57
2382 2475 2.240162 CTGGAAGGTACGGTCAGGGC 62.240 65.000 0.00 0.00 0.00 5.19
2408 2505 6.062434 ACTCGCTAATCACACATAGAGTAC 57.938 41.667 0.00 0.00 36.15 2.73
2409 2506 5.589050 ACTCGCTAATCACACATAGAGTACA 59.411 40.000 0.00 0.00 36.15 2.90
2410 2507 6.061231 TCGCTAATCACACATAGAGTACAG 57.939 41.667 0.00 0.00 0.00 2.74
2413 2510 7.444487 TCGCTAATCACACATAGAGTACAGTAT 59.556 37.037 0.00 0.00 0.00 2.12
2463 2560 2.430921 CGCCACACGTCTGGAGTC 60.431 66.667 14.69 0.00 36.87 3.36
2464 2561 2.048127 GCCACACGTCTGGAGTCC 60.048 66.667 14.69 0.73 32.30 3.85
2465 2562 2.258591 CCACACGTCTGGAGTCCG 59.741 66.667 3.36 0.00 32.30 4.79
2466 2563 2.430921 CACACGTCTGGAGTCCGC 60.431 66.667 4.30 0.00 0.00 5.54
2467 2564 2.597805 ACACGTCTGGAGTCCGCT 60.598 61.111 4.30 0.00 0.00 5.52
2468 2565 2.201022 ACACGTCTGGAGTCCGCTT 61.201 57.895 4.30 0.00 0.00 4.68
2469 2566 1.734477 CACGTCTGGAGTCCGCTTG 60.734 63.158 4.30 0.00 0.00 4.01
2472 2569 2.119611 TCTGGAGTCCGCTTGGGA 59.880 61.111 4.30 0.00 44.68 4.37
2506 2616 0.456312 CTGCAACGACCGGTCTACTC 60.456 60.000 30.92 17.69 0.00 2.59
2706 2822 0.667453 TGCGGCGGTATCGTAATACA 59.333 50.000 9.78 0.00 39.69 2.29
2710 2826 2.722629 CGGCGGTATCGTAATACAGTTG 59.277 50.000 0.00 0.00 39.69 3.16
2712 2828 3.491447 GGCGGTATCGTAATACAGTTGGT 60.491 47.826 0.00 0.00 39.69 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.913673 GTCACACGTAAATAACAATTGTTGGT 59.086 34.615 29.72 17.27 38.90 3.67
4 5 8.963130 CAATGTCACACGTAAATAACAATTGTT 58.037 29.630 25.99 25.99 41.73 2.83
5 6 8.132362 ACAATGTCACACGTAAATAACAATTGT 58.868 29.630 4.92 4.92 0.00 2.71
6 7 8.416424 CACAATGTCACACGTAAATAACAATTG 58.584 33.333 3.24 3.24 0.00 2.32
7 8 8.132362 ACACAATGTCACACGTAAATAACAATT 58.868 29.630 0.00 0.00 0.00 2.32
8 9 7.644490 ACACAATGTCACACGTAAATAACAAT 58.356 30.769 0.00 0.00 0.00 2.71
9 10 7.017498 ACACAATGTCACACGTAAATAACAA 57.983 32.000 0.00 0.00 0.00 2.83
10 11 6.606234 ACACAATGTCACACGTAAATAACA 57.394 33.333 0.00 0.00 0.00 2.41
11 12 6.129561 GCAACACAATGTCACACGTAAATAAC 60.130 38.462 0.00 0.00 0.00 1.89
12 13 5.910166 GCAACACAATGTCACACGTAAATAA 59.090 36.000 0.00 0.00 0.00 1.40
13 14 5.007724 TGCAACACAATGTCACACGTAAATA 59.992 36.000 0.00 0.00 0.00 1.40
14 15 4.201960 TGCAACACAATGTCACACGTAAAT 60.202 37.500 0.00 0.00 0.00 1.40
15 16 3.127030 TGCAACACAATGTCACACGTAAA 59.873 39.130 0.00 0.00 0.00 2.01
16 17 2.678336 TGCAACACAATGTCACACGTAA 59.322 40.909 0.00 0.00 0.00 3.18
17 18 2.280628 TGCAACACAATGTCACACGTA 58.719 42.857 0.00 0.00 0.00 3.57
18 19 1.090728 TGCAACACAATGTCACACGT 58.909 45.000 0.00 0.00 0.00 4.49
19 20 2.045586 CATGCAACACAATGTCACACG 58.954 47.619 0.00 0.00 0.00 4.49
20 21 3.352554 TCATGCAACACAATGTCACAC 57.647 42.857 0.00 0.00 0.00 3.82
21 22 4.037684 TCAATCATGCAACACAATGTCACA 59.962 37.500 0.00 0.00 0.00 3.58
22 23 4.383649 GTCAATCATGCAACACAATGTCAC 59.616 41.667 0.00 0.00 0.00 3.67
23 24 4.548494 GTCAATCATGCAACACAATGTCA 58.452 39.130 0.00 0.00 0.00 3.58
24 25 3.605056 CGTCAATCATGCAACACAATGTC 59.395 43.478 0.00 0.00 0.00 3.06
25 26 3.004629 ACGTCAATCATGCAACACAATGT 59.995 39.130 0.00 0.00 0.00 2.71
26 27 3.362534 CACGTCAATCATGCAACACAATG 59.637 43.478 0.00 0.00 0.00 2.82
27 28 3.567530 CACGTCAATCATGCAACACAAT 58.432 40.909 0.00 0.00 0.00 2.71
28 29 2.857874 GCACGTCAATCATGCAACACAA 60.858 45.455 0.00 0.00 39.23 3.33
29 30 1.334870 GCACGTCAATCATGCAACACA 60.335 47.619 0.00 0.00 39.23 3.72
30 31 1.330306 GCACGTCAATCATGCAACAC 58.670 50.000 0.00 0.00 39.23 3.32
31 32 0.950116 TGCACGTCAATCATGCAACA 59.050 45.000 0.00 0.00 45.96 3.33
32 33 3.771171 TGCACGTCAATCATGCAAC 57.229 47.368 0.00 0.00 45.96 4.17
35 36 5.060077 GCAAATATATGCACGTCAATCATGC 59.940 40.000 0.00 0.00 45.70 4.06
36 37 6.606965 GCAAATATATGCACGTCAATCATG 57.393 37.500 0.00 0.00 45.70 3.07
55 56 9.985730 AAATTCAGACTCTTAAATTCATGCAAA 57.014 25.926 0.00 0.00 0.00 3.68
56 57 9.414295 CAAATTCAGACTCTTAAATTCATGCAA 57.586 29.630 0.00 0.00 0.00 4.08
57 58 8.795513 TCAAATTCAGACTCTTAAATTCATGCA 58.204 29.630 0.00 0.00 0.00 3.96
58 59 9.630098 TTCAAATTCAGACTCTTAAATTCATGC 57.370 29.630 0.00 0.00 0.00 4.06
70 71 9.837525 GCATCCATATATTTCAAATTCAGACTC 57.162 33.333 0.00 0.00 0.00 3.36
71 72 9.358406 TGCATCCATATATTTCAAATTCAGACT 57.642 29.630 0.00 0.00 0.00 3.24
72 73 9.403110 GTGCATCCATATATTTCAAATTCAGAC 57.597 33.333 0.00 0.00 0.00 3.51
73 74 8.291740 CGTGCATCCATATATTTCAAATTCAGA 58.708 33.333 0.00 0.00 0.00 3.27
74 75 8.291740 TCGTGCATCCATATATTTCAAATTCAG 58.708 33.333 0.00 0.00 0.00 3.02
75 76 8.164058 TCGTGCATCCATATATTTCAAATTCA 57.836 30.769 0.00 0.00 0.00 2.57
76 77 9.462174 TTTCGTGCATCCATATATTTCAAATTC 57.538 29.630 0.00 0.00 0.00 2.17
77 78 9.248291 GTTTCGTGCATCCATATATTTCAAATT 57.752 29.630 0.00 0.00 0.00 1.82
78 79 7.591057 CGTTTCGTGCATCCATATATTTCAAAT 59.409 33.333 0.00 0.00 0.00 2.32
79 80 6.909895 CGTTTCGTGCATCCATATATTTCAAA 59.090 34.615 0.00 0.00 0.00 2.69
80 81 6.258947 TCGTTTCGTGCATCCATATATTTCAA 59.741 34.615 0.00 0.00 0.00 2.69
81 82 5.755861 TCGTTTCGTGCATCCATATATTTCA 59.244 36.000 0.00 0.00 0.00 2.69
82 83 6.223138 TCGTTTCGTGCATCCATATATTTC 57.777 37.500 0.00 0.00 0.00 2.17
83 84 6.612247 TTCGTTTCGTGCATCCATATATTT 57.388 33.333 0.00 0.00 0.00 1.40
84 85 6.612247 TTTCGTTTCGTGCATCCATATATT 57.388 33.333 0.00 0.00 0.00 1.28
85 86 6.801539 ATTTCGTTTCGTGCATCCATATAT 57.198 33.333 0.00 0.00 0.00 0.86
86 87 7.600752 TCATATTTCGTTTCGTGCATCCATATA 59.399 33.333 0.00 0.00 0.00 0.86
87 88 6.426633 TCATATTTCGTTTCGTGCATCCATAT 59.573 34.615 0.00 0.00 0.00 1.78
88 89 5.755861 TCATATTTCGTTTCGTGCATCCATA 59.244 36.000 0.00 0.00 0.00 2.74
89 90 4.574421 TCATATTTCGTTTCGTGCATCCAT 59.426 37.500 0.00 0.00 0.00 3.41
90 91 3.935828 TCATATTTCGTTTCGTGCATCCA 59.064 39.130 0.00 0.00 0.00 3.41
91 92 4.518217 CTCATATTTCGTTTCGTGCATCC 58.482 43.478 0.00 0.00 0.00 3.51
92 93 4.518217 CCTCATATTTCGTTTCGTGCATC 58.482 43.478 0.00 0.00 0.00 3.91
93 94 3.312421 CCCTCATATTTCGTTTCGTGCAT 59.688 43.478 0.00 0.00 0.00 3.96
94 95 2.675844 CCCTCATATTTCGTTTCGTGCA 59.324 45.455 0.00 0.00 0.00 4.57
95 96 2.538939 GCCCTCATATTTCGTTTCGTGC 60.539 50.000 0.00 0.00 0.00 5.34
96 97 2.031683 GGCCCTCATATTTCGTTTCGTG 59.968 50.000 0.00 0.00 0.00 4.35
97 98 2.285977 GGCCCTCATATTTCGTTTCGT 58.714 47.619 0.00 0.00 0.00 3.85
98 99 1.602377 GGGCCCTCATATTTCGTTTCG 59.398 52.381 17.04 0.00 0.00 3.46
99 100 1.602377 CGGGCCCTCATATTTCGTTTC 59.398 52.381 22.43 0.00 0.00 2.78
100 101 1.064979 ACGGGCCCTCATATTTCGTTT 60.065 47.619 22.43 0.00 0.00 3.60
101 102 0.544697 ACGGGCCCTCATATTTCGTT 59.455 50.000 22.43 0.00 0.00 3.85
102 103 0.106149 GACGGGCCCTCATATTTCGT 59.894 55.000 22.43 9.13 0.00 3.85
103 104 0.602905 GGACGGGCCCTCATATTTCG 60.603 60.000 22.43 5.35 0.00 3.46
104 105 0.602905 CGGACGGGCCCTCATATTTC 60.603 60.000 22.43 4.20 0.00 2.17
105 106 1.450211 CGGACGGGCCCTCATATTT 59.550 57.895 22.43 0.00 0.00 1.40
106 107 2.516888 CCGGACGGGCCCTCATATT 61.517 63.158 22.43 0.00 0.00 1.28
107 108 2.748641 ATCCGGACGGGCCCTCATAT 62.749 60.000 22.43 8.04 34.94 1.78
108 109 3.462056 ATCCGGACGGGCCCTCATA 62.462 63.158 22.43 6.10 34.94 2.15
109 110 4.880426 ATCCGGACGGGCCCTCAT 62.880 66.667 22.43 4.70 34.94 2.90
116 117 3.496131 CAAACGCATCCGGACGGG 61.496 66.667 13.54 13.54 39.22 5.28
117 118 4.160635 GCAAACGCATCCGGACGG 62.161 66.667 17.60 9.75 39.22 4.79
118 119 4.499023 CGCAAACGCATCCGGACG 62.499 66.667 6.12 10.12 39.22 4.79
119 120 4.160635 CCGCAAACGCATCCGGAC 62.161 66.667 6.12 0.00 43.20 4.79
159 160 1.873270 AAATCCGGCCCTTCAAACGC 61.873 55.000 0.00 0.00 0.00 4.84
160 161 0.109319 CAAATCCGGCCCTTCAAACG 60.109 55.000 0.00 0.00 0.00 3.60
161 162 0.389817 GCAAATCCGGCCCTTCAAAC 60.390 55.000 0.00 0.00 0.00 2.93
162 163 1.540435 GGCAAATCCGGCCCTTCAAA 61.540 55.000 0.00 0.00 45.87 2.69
163 164 1.981853 GGCAAATCCGGCCCTTCAA 60.982 57.895 0.00 0.00 45.87 2.69
164 165 2.362375 GGCAAATCCGGCCCTTCA 60.362 61.111 0.00 0.00 45.87 3.02
170 171 2.710902 GGGACTTGGCAAATCCGGC 61.711 63.158 20.30 5.01 37.80 6.13
171 172 2.406616 CGGGACTTGGCAAATCCGG 61.407 63.158 20.30 19.47 37.80 5.14
172 173 3.051392 GCGGGACTTGGCAAATCCG 62.051 63.158 20.30 21.71 40.33 4.18
173 174 1.250840 AAGCGGGACTTGGCAAATCC 61.251 55.000 19.06 19.06 37.17 3.01
174 175 0.603065 AAAGCGGGACTTGGCAAATC 59.397 50.000 0.00 0.00 39.09 2.17
175 176 1.818674 CTAAAGCGGGACTTGGCAAAT 59.181 47.619 0.00 0.00 39.09 2.32
176 177 1.202830 TCTAAAGCGGGACTTGGCAAA 60.203 47.619 0.00 0.00 39.09 3.68
177 178 0.398696 TCTAAAGCGGGACTTGGCAA 59.601 50.000 0.00 0.00 39.09 4.52
178 179 0.618458 ATCTAAAGCGGGACTTGGCA 59.382 50.000 0.00 0.00 39.09 4.92
179 180 1.017387 CATCTAAAGCGGGACTTGGC 58.983 55.000 0.00 0.00 39.09 4.52
180 181 1.017387 GCATCTAAAGCGGGACTTGG 58.983 55.000 0.00 0.00 39.09 3.61
181 182 1.936547 GAGCATCTAAAGCGGGACTTG 59.063 52.381 0.00 0.00 39.09 3.16
182 183 2.317530 GAGCATCTAAAGCGGGACTT 57.682 50.000 0.00 0.00 41.70 3.01
194 195 7.147655 ACATACATGTAGTTGGTAAGAGCATCT 60.148 37.037 11.91 0.00 44.23 2.90
195 196 6.986817 ACATACATGTAGTTGGTAAGAGCATC 59.013 38.462 11.91 0.00 39.68 3.91
196 197 6.889198 ACATACATGTAGTTGGTAAGAGCAT 58.111 36.000 11.91 0.00 39.68 3.79
197 198 6.154534 AGACATACATGTAGTTGGTAAGAGCA 59.845 38.462 11.91 0.00 41.95 4.26
198 199 6.477033 CAGACATACATGTAGTTGGTAAGAGC 59.523 42.308 11.91 0.00 41.95 4.09
199 200 7.772166 TCAGACATACATGTAGTTGGTAAGAG 58.228 38.462 11.91 0.00 41.95 2.85
200 201 7.712204 TCAGACATACATGTAGTTGGTAAGA 57.288 36.000 11.91 5.86 41.95 2.10
201 202 8.948631 AATCAGACATACATGTAGTTGGTAAG 57.051 34.615 11.91 3.95 41.95 2.34
204 205 9.330063 CATAAATCAGACATACATGTAGTTGGT 57.670 33.333 11.91 6.82 41.95 3.67
205 206 9.330063 ACATAAATCAGACATACATGTAGTTGG 57.670 33.333 11.91 3.72 41.95 3.77
207 208 8.830580 GCACATAAATCAGACATACATGTAGTT 58.169 33.333 11.91 0.00 41.95 2.24
208 209 8.206867 AGCACATAAATCAGACATACATGTAGT 58.793 33.333 11.91 9.35 41.95 2.73
209 210 8.599055 AGCACATAAATCAGACATACATGTAG 57.401 34.615 11.91 6.29 41.95 2.74
210 211 9.476202 GTAGCACATAAATCAGACATACATGTA 57.524 33.333 8.27 8.27 41.95 2.29
211 212 8.206867 AGTAGCACATAAATCAGACATACATGT 58.793 33.333 2.69 2.69 45.16 3.21
212 213 8.599055 AGTAGCACATAAATCAGACATACATG 57.401 34.615 0.00 0.00 0.00 3.21
269 270 8.903820 CGGTATCACTCACCTATATCAATATGA 58.096 37.037 0.00 0.00 33.62 2.15
270 271 8.903820 TCGGTATCACTCACCTATATCAATATG 58.096 37.037 0.00 0.00 33.62 1.78
271 272 9.126151 CTCGGTATCACTCACCTATATCAATAT 57.874 37.037 0.00 0.00 33.62 1.28
272 273 8.107729 ACTCGGTATCACTCACCTATATCAATA 58.892 37.037 0.00 0.00 33.62 1.90
273 274 6.948886 ACTCGGTATCACTCACCTATATCAAT 59.051 38.462 0.00 0.00 33.62 2.57
274 275 6.304624 ACTCGGTATCACTCACCTATATCAA 58.695 40.000 0.00 0.00 33.62 2.57
275 276 5.877491 ACTCGGTATCACTCACCTATATCA 58.123 41.667 0.00 0.00 33.62 2.15
276 277 7.769507 TGATACTCGGTATCACTCACCTATATC 59.230 40.741 17.50 0.00 46.45 1.63
277 278 7.631007 TGATACTCGGTATCACTCACCTATAT 58.369 38.462 17.50 0.00 46.45 0.86
278 279 7.012661 TGATACTCGGTATCACTCACCTATA 57.987 40.000 17.50 0.00 46.45 1.31
279 280 5.877491 TGATACTCGGTATCACTCACCTAT 58.123 41.667 17.50 0.00 46.45 2.57
280 281 5.300411 TGATACTCGGTATCACTCACCTA 57.700 43.478 17.50 0.10 46.45 3.08
281 282 4.166246 TGATACTCGGTATCACTCACCT 57.834 45.455 17.50 0.00 46.45 4.00
289 290 6.504398 TCTGTCATGTTTGATACTCGGTATC 58.496 40.000 13.85 13.85 43.49 2.24
290 291 6.465439 TCTGTCATGTTTGATACTCGGTAT 57.535 37.500 0.00 0.00 33.56 2.73
291 292 5.907866 TCTGTCATGTTTGATACTCGGTA 57.092 39.130 0.00 0.00 33.56 4.02
292 293 4.801330 TCTGTCATGTTTGATACTCGGT 57.199 40.909 0.00 0.00 33.56 4.69
293 294 5.351458 TCATCTGTCATGTTTGATACTCGG 58.649 41.667 0.00 0.00 33.56 4.63
294 295 6.892310 TTCATCTGTCATGTTTGATACTCG 57.108 37.500 0.00 0.00 33.56 4.18
295 296 8.206325 ACATTCATCTGTCATGTTTGATACTC 57.794 34.615 0.00 0.00 33.56 2.59
296 297 9.102757 GTACATTCATCTGTCATGTTTGATACT 57.897 33.333 0.00 0.00 33.56 2.12
297 298 8.338259 GGTACATTCATCTGTCATGTTTGATAC 58.662 37.037 0.00 0.00 33.56 2.24
298 299 7.224557 CGGTACATTCATCTGTCATGTTTGATA 59.775 37.037 0.00 0.00 33.56 2.15
299 300 6.037500 CGGTACATTCATCTGTCATGTTTGAT 59.962 38.462 0.00 0.00 33.56 2.57
300 301 5.351189 CGGTACATTCATCTGTCATGTTTGA 59.649 40.000 0.00 0.00 33.19 2.69
301 302 5.351189 TCGGTACATTCATCTGTCATGTTTG 59.649 40.000 0.00 0.00 33.19 2.93
302 303 5.487433 TCGGTACATTCATCTGTCATGTTT 58.513 37.500 0.00 0.00 33.19 2.83
303 304 5.084818 TCGGTACATTCATCTGTCATGTT 57.915 39.130 0.00 0.00 33.19 2.71
304 305 4.402474 TCTCGGTACATTCATCTGTCATGT 59.598 41.667 0.00 0.00 35.33 3.21
305 306 4.936891 TCTCGGTACATTCATCTGTCATG 58.063 43.478 0.00 0.00 0.00 3.07
306 307 5.798125 ATCTCGGTACATTCATCTGTCAT 57.202 39.130 0.00 0.00 0.00 3.06
307 308 6.546034 TCTTATCTCGGTACATTCATCTGTCA 59.454 38.462 0.00 0.00 0.00 3.58
308 309 6.971602 TCTTATCTCGGTACATTCATCTGTC 58.028 40.000 0.00 0.00 0.00 3.51
309 310 6.961360 TCTTATCTCGGTACATTCATCTGT 57.039 37.500 0.00 0.00 0.00 3.41
310 311 9.566530 CTTATCTTATCTCGGTACATTCATCTG 57.433 37.037 0.00 0.00 0.00 2.90
311 312 9.303116 ACTTATCTTATCTCGGTACATTCATCT 57.697 33.333 0.00 0.00 0.00 2.90
312 313 9.347934 CACTTATCTTATCTCGGTACATTCATC 57.652 37.037 0.00 0.00 0.00 2.92
313 314 7.815068 GCACTTATCTTATCTCGGTACATTCAT 59.185 37.037 0.00 0.00 0.00 2.57
314 315 7.145985 GCACTTATCTTATCTCGGTACATTCA 58.854 38.462 0.00 0.00 0.00 2.57
315 316 7.145985 TGCACTTATCTTATCTCGGTACATTC 58.854 38.462 0.00 0.00 0.00 2.67
316 317 7.050970 TGCACTTATCTTATCTCGGTACATT 57.949 36.000 0.00 0.00 0.00 2.71
317 318 6.650427 TGCACTTATCTTATCTCGGTACAT 57.350 37.500 0.00 0.00 0.00 2.29
318 319 6.040504 ACATGCACTTATCTTATCTCGGTACA 59.959 38.462 0.00 0.00 0.00 2.90
319 320 6.448006 ACATGCACTTATCTTATCTCGGTAC 58.552 40.000 0.00 0.00 0.00 3.34
320 321 6.650427 ACATGCACTTATCTTATCTCGGTA 57.350 37.500 0.00 0.00 0.00 4.02
321 322 5.537300 ACATGCACTTATCTTATCTCGGT 57.463 39.130 0.00 0.00 0.00 4.69
322 323 6.096036 CCTACATGCACTTATCTTATCTCGG 58.904 44.000 0.00 0.00 0.00 4.63
323 324 5.574830 GCCTACATGCACTTATCTTATCTCG 59.425 44.000 0.00 0.00 0.00 4.04
324 325 5.872070 GGCCTACATGCACTTATCTTATCTC 59.128 44.000 0.00 0.00 0.00 2.75
325 326 5.280215 GGGCCTACATGCACTTATCTTATCT 60.280 44.000 0.84 0.00 0.00 1.98
326 327 4.938226 GGGCCTACATGCACTTATCTTATC 59.062 45.833 0.84 0.00 0.00 1.75
327 328 4.599241 AGGGCCTACATGCACTTATCTTAT 59.401 41.667 2.82 0.00 44.30 1.73
328 329 3.973973 AGGGCCTACATGCACTTATCTTA 59.026 43.478 2.82 0.00 44.30 2.10
329 330 2.780010 AGGGCCTACATGCACTTATCTT 59.220 45.455 2.82 0.00 44.30 2.40
330 331 2.412591 AGGGCCTACATGCACTTATCT 58.587 47.619 2.82 0.00 44.30 1.98
331 332 2.938956 AGGGCCTACATGCACTTATC 57.061 50.000 2.82 0.00 44.30 1.75
336 337 1.153086 CCTGAGGGCCTACATGCAC 60.153 63.158 5.73 0.00 33.81 4.57
337 338 1.616327 ACCTGAGGGCCTACATGCA 60.616 57.895 5.73 0.00 35.63 3.96
338 339 1.153086 CACCTGAGGGCCTACATGC 60.153 63.158 5.73 0.00 35.63 4.06
339 340 1.528824 CCACCTGAGGGCCTACATG 59.471 63.158 5.73 6.38 35.63 3.21
340 341 2.378634 GCCACCTGAGGGCCTACAT 61.379 63.158 5.73 0.00 45.87 2.29
341 342 3.009115 GCCACCTGAGGGCCTACA 61.009 66.667 5.73 5.72 45.87 2.74
357 358 4.537433 CACTAGAGGCTGGGGCGC 62.537 72.222 0.00 0.00 39.81 6.53
358 359 4.537433 GCACTAGAGGCTGGGGCG 62.537 72.222 0.00 0.00 39.81 6.13
359 360 1.410850 TATGCACTAGAGGCTGGGGC 61.411 60.000 0.00 0.00 41.82 5.80
360 361 0.683973 CTATGCACTAGAGGCTGGGG 59.316 60.000 0.00 0.00 0.00 4.96
361 362 1.342819 GACTATGCACTAGAGGCTGGG 59.657 57.143 0.00 0.00 0.00 4.45
362 363 2.034878 TGACTATGCACTAGAGGCTGG 58.965 52.381 0.00 0.00 0.00 4.85
363 364 3.554544 CCATGACTATGCACTAGAGGCTG 60.555 52.174 0.00 0.00 32.79 4.85
364 365 2.632028 CCATGACTATGCACTAGAGGCT 59.368 50.000 0.00 0.00 32.79 4.58
365 366 2.630098 TCCATGACTATGCACTAGAGGC 59.370 50.000 0.00 0.00 32.79 4.70
366 367 4.148079 TCTCCATGACTATGCACTAGAGG 58.852 47.826 0.00 0.00 32.79 3.69
367 368 5.336610 CCATCTCCATGACTATGCACTAGAG 60.337 48.000 0.00 0.00 32.79 2.43
368 369 4.525874 CCATCTCCATGACTATGCACTAGA 59.474 45.833 0.00 0.00 32.79 2.43
369 370 4.525874 TCCATCTCCATGACTATGCACTAG 59.474 45.833 0.00 0.00 32.79 2.57
370 371 4.482990 TCCATCTCCATGACTATGCACTA 58.517 43.478 0.00 0.00 32.79 2.74
371 372 3.311990 TCCATCTCCATGACTATGCACT 58.688 45.455 0.00 0.00 32.79 4.40
372 373 3.758755 TCCATCTCCATGACTATGCAC 57.241 47.619 0.00 0.00 32.79 4.57
373 374 4.776435 TTTCCATCTCCATGACTATGCA 57.224 40.909 0.00 0.00 32.79 3.96
374 375 5.564259 GCAATTTCCATCTCCATGACTATGC 60.564 44.000 0.00 0.00 32.79 3.14
375 376 5.533528 TGCAATTTCCATCTCCATGACTATG 59.466 40.000 0.00 0.00 30.57 2.23
376 377 5.698104 TGCAATTTCCATCTCCATGACTAT 58.302 37.500 0.00 0.00 30.57 2.12
377 378 5.114764 TGCAATTTCCATCTCCATGACTA 57.885 39.130 0.00 0.00 30.57 2.59
378 379 3.972133 TGCAATTTCCATCTCCATGACT 58.028 40.909 0.00 0.00 30.57 3.41
379 380 4.724074 TTGCAATTTCCATCTCCATGAC 57.276 40.909 0.00 0.00 30.57 3.06
380 381 4.442332 GCATTGCAATTTCCATCTCCATGA 60.442 41.667 9.83 0.00 30.57 3.07
381 382 3.807622 GCATTGCAATTTCCATCTCCATG 59.192 43.478 9.83 0.00 0.00 3.66
382 383 3.709653 AGCATTGCAATTTCCATCTCCAT 59.290 39.130 9.83 0.00 0.00 3.41
383 384 3.101437 AGCATTGCAATTTCCATCTCCA 58.899 40.909 9.83 0.00 0.00 3.86
384 385 3.814005 AGCATTGCAATTTCCATCTCC 57.186 42.857 9.83 0.00 0.00 3.71
385 386 6.509656 TGATAAGCATTGCAATTTCCATCTC 58.490 36.000 9.83 2.16 0.00 2.75
386 387 6.474140 TGATAAGCATTGCAATTTCCATCT 57.526 33.333 9.83 0.00 0.00 2.90
387 388 8.301720 TCTATGATAAGCATTGCAATTTCCATC 58.698 33.333 9.83 10.82 38.44 3.51
388 389 8.185506 TCTATGATAAGCATTGCAATTTCCAT 57.814 30.769 9.83 11.60 38.44 3.41
389 390 7.585579 TCTATGATAAGCATTGCAATTTCCA 57.414 32.000 9.83 5.44 38.44 3.53
390 391 8.139989 AGTTCTATGATAAGCATTGCAATTTCC 58.860 33.333 9.83 1.20 38.44 3.13
401 402 8.840321 GGCTGAAAATTAGTTCTATGATAAGCA 58.160 33.333 0.00 0.00 0.00 3.91
402 403 8.840321 TGGCTGAAAATTAGTTCTATGATAAGC 58.160 33.333 0.00 0.00 0.00 3.09
407 408 9.295825 TCTTTTGGCTGAAAATTAGTTCTATGA 57.704 29.630 0.00 0.00 32.98 2.15
408 409 9.912634 TTCTTTTGGCTGAAAATTAGTTCTATG 57.087 29.630 0.00 0.00 32.98 2.23
436 437 9.043548 GCCCTAGACTCACCCTAATTATAATTA 57.956 37.037 15.47 15.47 0.00 1.40
437 438 7.516209 TGCCCTAGACTCACCCTAATTATAATT 59.484 37.037 14.86 14.86 0.00 1.40
438 439 7.023120 TGCCCTAGACTCACCCTAATTATAAT 58.977 38.462 0.00 0.00 0.00 1.28
439 440 6.269307 GTGCCCTAGACTCACCCTAATTATAA 59.731 42.308 0.00 0.00 0.00 0.98
440 441 5.778750 GTGCCCTAGACTCACCCTAATTATA 59.221 44.000 0.00 0.00 0.00 0.98
441 442 4.593634 GTGCCCTAGACTCACCCTAATTAT 59.406 45.833 0.00 0.00 0.00 1.28
442 443 3.965347 GTGCCCTAGACTCACCCTAATTA 59.035 47.826 0.00 0.00 0.00 1.40
443 444 2.772515 GTGCCCTAGACTCACCCTAATT 59.227 50.000 0.00 0.00 0.00 1.40
444 445 2.292918 TGTGCCCTAGACTCACCCTAAT 60.293 50.000 0.00 0.00 0.00 1.73
445 446 1.078159 TGTGCCCTAGACTCACCCTAA 59.922 52.381 0.00 0.00 0.00 2.69
446 447 0.708209 TGTGCCCTAGACTCACCCTA 59.292 55.000 0.00 0.00 0.00 3.53
447 448 0.043334 ATGTGCCCTAGACTCACCCT 59.957 55.000 0.00 0.00 0.00 4.34
448 449 0.466124 GATGTGCCCTAGACTCACCC 59.534 60.000 0.00 0.00 0.00 4.61
449 450 1.490574 AGATGTGCCCTAGACTCACC 58.509 55.000 0.00 0.00 0.00 4.02
450 451 3.556999 TCTAGATGTGCCCTAGACTCAC 58.443 50.000 0.00 0.00 38.08 3.51
451 452 3.953542 TCTAGATGTGCCCTAGACTCA 57.046 47.619 0.00 0.00 38.08 3.41
452 453 5.163561 GCATATCTAGATGTGCCCTAGACTC 60.164 48.000 32.93 11.25 46.14 3.36
453 454 4.709397 GCATATCTAGATGTGCCCTAGACT 59.291 45.833 32.93 1.45 46.14 3.24
454 455 5.004922 GCATATCTAGATGTGCCCTAGAC 57.995 47.826 32.93 12.44 46.14 2.59
473 474 9.212641 CACTTAGATGTGCAATAACTATAGCAT 57.787 33.333 0.00 0.00 39.43 3.79
474 475 8.421002 TCACTTAGATGTGCAATAACTATAGCA 58.579 33.333 0.00 0.00 37.81 3.49
475 476 8.818141 TCACTTAGATGTGCAATAACTATAGC 57.182 34.615 0.00 0.00 37.81 2.97
476 477 9.973450 ACTCACTTAGATGTGCAATAACTATAG 57.027 33.333 0.00 0.00 37.81 1.31
477 478 9.750125 CACTCACTTAGATGTGCAATAACTATA 57.250 33.333 0.00 0.00 37.81 1.31
478 479 8.478066 TCACTCACTTAGATGTGCAATAACTAT 58.522 33.333 0.00 0.00 37.81 2.12
479 480 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
480 481 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
481 482 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
482 483 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
483 484 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
484 485 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
485 486 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
486 487 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
487 488 6.073058 TGTTTGATTCACTCACTTAGATGTGC 60.073 38.462 0.00 0.00 37.81 4.57
488 489 7.425577 TGTTTGATTCACTCACTTAGATGTG 57.574 36.000 0.00 0.00 39.15 3.21
489 490 9.725019 TTATGTTTGATTCACTCACTTAGATGT 57.275 29.630 0.00 0.00 32.17 3.06
495 496 8.912988 TCCTTTTTATGTTTGATTCACTCACTT 58.087 29.630 0.00 0.00 32.17 3.16
496 497 8.463930 TCCTTTTTATGTTTGATTCACTCACT 57.536 30.769 0.00 0.00 32.17 3.41
497 498 9.528018 TTTCCTTTTTATGTTTGATTCACTCAC 57.472 29.630 0.00 0.00 32.17 3.51
536 537 5.005394 CGTCGAGATTCGTGTGGATATTTTT 59.995 40.000 0.00 0.00 41.35 1.94
537 538 4.503007 CGTCGAGATTCGTGTGGATATTTT 59.497 41.667 0.00 0.00 41.35 1.82
538 539 4.042398 CGTCGAGATTCGTGTGGATATTT 58.958 43.478 0.00 0.00 41.35 1.40
539 540 3.066342 ACGTCGAGATTCGTGTGGATATT 59.934 43.478 0.00 0.00 41.35 1.28
540 541 2.617308 ACGTCGAGATTCGTGTGGATAT 59.383 45.455 0.00 0.00 41.35 1.63
541 542 2.011947 ACGTCGAGATTCGTGTGGATA 58.988 47.619 0.00 0.00 41.35 2.59
542 543 0.809385 ACGTCGAGATTCGTGTGGAT 59.191 50.000 0.00 0.00 41.35 3.41
543 544 1.441738 TACGTCGAGATTCGTGTGGA 58.558 50.000 8.84 0.00 41.35 4.02
544 545 2.251869 TTACGTCGAGATTCGTGTGG 57.748 50.000 8.84 0.00 41.35 4.17
545 546 4.322539 TGATTTTACGTCGAGATTCGTGTG 59.677 41.667 8.84 0.00 41.35 3.82
546 547 4.478699 TGATTTTACGTCGAGATTCGTGT 58.521 39.130 8.84 2.15 41.35 4.49
547 548 5.430220 TTGATTTTACGTCGAGATTCGTG 57.570 39.130 8.84 0.00 41.35 4.35
548 549 5.803461 TGATTGATTTTACGTCGAGATTCGT 59.197 36.000 0.00 4.19 41.35 3.85
549 550 6.114288 GTGATTGATTTTACGTCGAGATTCG 58.886 40.000 0.00 0.00 42.10 3.34
550 551 6.989437 TGTGATTGATTTTACGTCGAGATTC 58.011 36.000 0.00 0.00 0.00 2.52
551 552 6.961359 TGTGATTGATTTTACGTCGAGATT 57.039 33.333 0.00 0.00 0.00 2.40
552 553 8.703336 CATATGTGATTGATTTTACGTCGAGAT 58.297 33.333 0.00 0.00 0.00 2.75
553 554 7.918562 TCATATGTGATTGATTTTACGTCGAGA 59.081 33.333 0.00 0.00 0.00 4.04
554 555 7.998767 GTCATATGTGATTGATTTTACGTCGAG 59.001 37.037 0.00 0.00 36.60 4.04
555 556 7.704899 AGTCATATGTGATTGATTTTACGTCGA 59.295 33.333 0.00 0.00 36.60 4.20
556 557 7.841486 AGTCATATGTGATTGATTTTACGTCG 58.159 34.615 1.90 0.00 36.60 5.12
561 562 9.573166 CCCCTAAGTCATATGTGATTGATTTTA 57.427 33.333 1.90 0.00 36.60 1.52
562 563 7.506938 CCCCCTAAGTCATATGTGATTGATTTT 59.493 37.037 1.90 0.00 36.60 1.82
563 564 7.006509 CCCCCTAAGTCATATGTGATTGATTT 58.993 38.462 1.90 0.00 36.60 2.17
564 565 6.103205 ACCCCCTAAGTCATATGTGATTGATT 59.897 38.462 1.90 0.00 36.60 2.57
565 566 5.612688 ACCCCCTAAGTCATATGTGATTGAT 59.387 40.000 1.90 0.00 36.60 2.57
566 567 4.975147 ACCCCCTAAGTCATATGTGATTGA 59.025 41.667 1.90 0.00 36.60 2.57
567 568 5.065914 CACCCCCTAAGTCATATGTGATTG 58.934 45.833 1.90 0.00 36.60 2.67
568 569 4.726825 ACACCCCCTAAGTCATATGTGATT 59.273 41.667 1.90 0.00 36.60 2.57
569 570 4.307259 ACACCCCCTAAGTCATATGTGAT 58.693 43.478 1.90 0.00 36.60 3.06
570 571 3.731431 ACACCCCCTAAGTCATATGTGA 58.269 45.455 1.90 0.00 0.00 3.58
571 572 4.503714 AACACCCCCTAAGTCATATGTG 57.496 45.455 1.90 0.00 0.00 3.21
572 573 4.325030 CCAAACACCCCCTAAGTCATATGT 60.325 45.833 1.90 0.00 0.00 2.29
573 574 4.207165 CCAAACACCCCCTAAGTCATATG 58.793 47.826 0.00 0.00 0.00 1.78
574 575 3.856206 ACCAAACACCCCCTAAGTCATAT 59.144 43.478 0.00 0.00 0.00 1.78
575 576 3.261962 ACCAAACACCCCCTAAGTCATA 58.738 45.455 0.00 0.00 0.00 2.15
576 577 2.070573 ACCAAACACCCCCTAAGTCAT 58.929 47.619 0.00 0.00 0.00 3.06
577 578 1.525175 ACCAAACACCCCCTAAGTCA 58.475 50.000 0.00 0.00 0.00 3.41
578 579 2.158579 TGAACCAAACACCCCCTAAGTC 60.159 50.000 0.00 0.00 0.00 3.01
579 580 1.854280 TGAACCAAACACCCCCTAAGT 59.146 47.619 0.00 0.00 0.00 2.24
580 581 2.514803 CTGAACCAAACACCCCCTAAG 58.485 52.381 0.00 0.00 0.00 2.18
581 582 1.146152 CCTGAACCAAACACCCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
582 583 0.774908 CCTGAACCAAACACCCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
583 584 1.541672 CCTGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
584 585 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
585 586 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
586 587 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
587 588 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
588 589 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
589 590 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
590 591 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
611 612 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
612 613 3.838903 GGGACTTTTTCTAGTCTCTGGGA 59.161 47.826 0.00 0.00 41.50 4.37
613 614 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
617 618 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
618 619 7.937942 GGACTTTTTAGGGACTTTTTCTAGTCT 59.062 37.037 0.00 0.00 43.26 3.24
619 620 7.174599 GGGACTTTTTAGGGACTTTTTCTAGTC 59.825 40.741 0.00 0.00 43.05 2.59
620 621 7.002879 GGGACTTTTTAGGGACTTTTTCTAGT 58.997 38.462 0.00 0.00 41.75 2.57
621 622 7.232188 AGGGACTTTTTAGGGACTTTTTCTAG 58.768 38.462 0.00 0.00 34.75 2.43
622 623 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
623 624 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
624 625 6.433404 CCTAGGGACTTTTTAGGGACTTTTTC 59.567 42.308 0.00 0.00 39.49 2.29
625 626 6.103649 TCCTAGGGACTTTTTAGGGACTTTTT 59.896 38.462 9.46 0.00 39.49 1.94
626 627 5.613973 TCCTAGGGACTTTTTAGGGACTTTT 59.386 40.000 9.46 0.00 39.49 2.27
627 628 5.167921 TCCTAGGGACTTTTTAGGGACTTT 58.832 41.667 9.46 0.00 39.49 2.66
628 629 4.771338 TCCTAGGGACTTTTTAGGGACTT 58.229 43.478 9.46 0.00 39.49 3.01
629 630 4.431158 TCCTAGGGACTTTTTAGGGACT 57.569 45.455 9.46 0.00 41.75 3.85
630 631 4.324099 GGTTCCTAGGGACTTTTTAGGGAC 60.324 50.000 20.08 0.45 40.79 4.46
631 632 3.848377 GGTTCCTAGGGACTTTTTAGGGA 59.152 47.826 20.08 0.00 41.75 4.20
632 633 3.590182 TGGTTCCTAGGGACTTTTTAGGG 59.410 47.826 20.08 0.00 41.75 3.53
633 634 4.921644 TGGTTCCTAGGGACTTTTTAGG 57.078 45.455 20.08 0.00 41.75 2.69
634 635 5.180680 CGTTTGGTTCCTAGGGACTTTTTAG 59.819 44.000 20.08 4.22 41.75 1.85
635 636 5.065235 CGTTTGGTTCCTAGGGACTTTTTA 58.935 41.667 20.08 0.00 41.75 1.52
636 637 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
637 638 3.483421 CGTTTGGTTCCTAGGGACTTTT 58.517 45.455 20.08 0.00 41.75 2.27
638 639 2.224695 CCGTTTGGTTCCTAGGGACTTT 60.225 50.000 20.08 0.00 41.75 2.66
639 640 1.350019 CCGTTTGGTTCCTAGGGACTT 59.650 52.381 20.08 0.00 41.75 3.01
640 641 0.981943 CCGTTTGGTTCCTAGGGACT 59.018 55.000 20.08 0.00 46.37 3.85
641 642 0.035725 CCCGTTTGGTTCCTAGGGAC 60.036 60.000 12.35 12.35 41.26 4.46
642 643 0.178897 TCCCGTTTGGTTCCTAGGGA 60.179 55.000 9.46 0.00 44.85 4.20
643 644 0.252197 CTCCCGTTTGGTTCCTAGGG 59.748 60.000 9.46 0.00 40.16 3.53
644 645 0.252197 CCTCCCGTTTGGTTCCTAGG 59.748 60.000 0.82 0.82 34.77 3.02
645 646 0.252197 CCCTCCCGTTTGGTTCCTAG 59.748 60.000 0.00 0.00 34.77 3.02
646 647 0.178897 TCCCTCCCGTTTGGTTCCTA 60.179 55.000 0.00 0.00 34.77 2.94
647 648 1.462627 TCCCTCCCGTTTGGTTCCT 60.463 57.895 0.00 0.00 34.77 3.36
648 649 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
649 650 0.109913 AAGTCCCTCCCGTTTGGTTC 59.890 55.000 0.00 0.00 34.77 3.62
650 651 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
651 652 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
652 653 1.699730 AAAAAGTCCCTCCCGTTTGG 58.300 50.000 0.00 0.00 0.00 3.28
669 670 9.862149 AGAGTCTTTTTCTAATCCCTGTAAAAA 57.138 29.630 0.00 0.00 0.00 1.94
671 672 9.939802 GTAGAGTCTTTTTCTAATCCCTGTAAA 57.060 33.333 0.00 0.00 0.00 2.01
672 673 9.322769 AGTAGAGTCTTTTTCTAATCCCTGTAA 57.677 33.333 0.00 0.00 0.00 2.41
673 674 8.896722 AGTAGAGTCTTTTTCTAATCCCTGTA 57.103 34.615 0.00 0.00 0.00 2.74
674 675 7.800300 AGTAGAGTCTTTTTCTAATCCCTGT 57.200 36.000 0.00 0.00 0.00 4.00
675 676 9.191479 TCTAGTAGAGTCTTTTTCTAATCCCTG 57.809 37.037 0.00 0.00 29.36 4.45
676 677 9.416284 CTCTAGTAGAGTCTTTTTCTAATCCCT 57.584 37.037 17.70 0.00 37.57 4.20
677 678 9.411189 TCTCTAGTAGAGTCTTTTTCTAATCCC 57.589 37.037 23.51 0.00 42.83 3.85
736 737 1.056660 TGGTTCAGAAGTCCCAGGAC 58.943 55.000 8.88 8.88 44.86 3.85
737 738 1.814429 TTGGTTCAGAAGTCCCAGGA 58.186 50.000 0.00 0.00 0.00 3.86
738 739 2.230660 GTTTGGTTCAGAAGTCCCAGG 58.769 52.381 0.00 0.00 0.00 4.45
739 740 2.880890 CTGTTTGGTTCAGAAGTCCCAG 59.119 50.000 0.00 0.00 35.20 4.45
740 741 2.930950 CTGTTTGGTTCAGAAGTCCCA 58.069 47.619 0.00 0.00 35.20 4.37
741 742 1.609072 GCTGTTTGGTTCAGAAGTCCC 59.391 52.381 0.00 0.00 35.20 4.46
742 743 1.609072 GGCTGTTTGGTTCAGAAGTCC 59.391 52.381 0.00 0.00 35.20 3.85
743 744 1.609072 GGGCTGTTTGGTTCAGAAGTC 59.391 52.381 0.00 0.00 35.20 3.01
744 745 1.692411 GGGCTGTTTGGTTCAGAAGT 58.308 50.000 0.00 0.00 35.20 3.01
745 746 0.961753 GGGGCTGTTTGGTTCAGAAG 59.038 55.000 0.00 0.00 35.20 2.85
746 747 0.555769 AGGGGCTGTTTGGTTCAGAA 59.444 50.000 0.00 0.00 35.20 3.02
747 748 0.555769 AAGGGGCTGTTTGGTTCAGA 59.444 50.000 0.00 0.00 35.20 3.27
748 749 2.162681 CTAAGGGGCTGTTTGGTTCAG 58.837 52.381 0.00 0.00 36.18 3.02
749 750 1.777878 TCTAAGGGGCTGTTTGGTTCA 59.222 47.619 0.00 0.00 0.00 3.18
750 751 2.579410 TCTAAGGGGCTGTTTGGTTC 57.421 50.000 0.00 0.00 0.00 3.62
751 752 2.110011 ACATCTAAGGGGCTGTTTGGTT 59.890 45.455 0.00 0.00 0.00 3.67
752 753 1.710809 ACATCTAAGGGGCTGTTTGGT 59.289 47.619 0.00 0.00 0.00 3.67
753 754 2.094675 CACATCTAAGGGGCTGTTTGG 58.905 52.381 0.00 0.00 0.00 3.28
754 755 2.795329 ACACATCTAAGGGGCTGTTTG 58.205 47.619 0.00 0.00 0.00 2.93
755 756 4.650972 TTACACATCTAAGGGGCTGTTT 57.349 40.909 0.00 0.00 0.00 2.83
756 757 4.862641 ATTACACATCTAAGGGGCTGTT 57.137 40.909 0.00 0.00 0.00 3.16
757 758 5.846714 AGATATTACACATCTAAGGGGCTGT 59.153 40.000 0.00 0.00 30.89 4.40
758 759 6.169094 CAGATATTACACATCTAAGGGGCTG 58.831 44.000 0.00 0.00 31.48 4.85
759 760 5.846714 ACAGATATTACACATCTAAGGGGCT 59.153 40.000 0.00 0.00 31.48 5.19
760 761 5.934625 CACAGATATTACACATCTAAGGGGC 59.065 44.000 0.00 0.00 31.48 5.80
761 762 6.467677 CCACAGATATTACACATCTAAGGGG 58.532 44.000 0.00 0.00 31.48 4.79
762 763 5.934625 GCCACAGATATTACACATCTAAGGG 59.065 44.000 0.00 0.00 31.48 3.95
763 764 6.425114 GTGCCACAGATATTACACATCTAAGG 59.575 42.308 0.00 0.00 31.48 2.69
764 765 6.986231 TGTGCCACAGATATTACACATCTAAG 59.014 38.462 0.00 0.00 33.41 2.18
765 766 6.883744 TGTGCCACAGATATTACACATCTAA 58.116 36.000 0.00 0.00 33.41 2.10
766 767 6.478512 TGTGCCACAGATATTACACATCTA 57.521 37.500 0.00 0.00 33.41 1.98
767 768 5.357742 TGTGCCACAGATATTACACATCT 57.642 39.130 0.00 0.00 33.41 2.90
770 771 5.357742 AGATGTGCCACAGATATTACACA 57.642 39.130 3.00 0.00 41.73 3.72
771 772 6.749139 TCTAGATGTGCCACAGATATTACAC 58.251 40.000 3.00 0.00 0.00 2.90
772 773 6.976934 TCTAGATGTGCCACAGATATTACA 57.023 37.500 3.00 0.00 0.00 2.41
773 774 7.661968 TCTTCTAGATGTGCCACAGATATTAC 58.338 38.462 3.00 0.00 0.00 1.89
774 775 7.839680 TCTTCTAGATGTGCCACAGATATTA 57.160 36.000 3.00 0.00 0.00 0.98
775 776 6.737720 TCTTCTAGATGTGCCACAGATATT 57.262 37.500 3.00 0.00 0.00 1.28
776 777 6.552725 TCTTCTTCTAGATGTGCCACAGATAT 59.447 38.462 3.00 0.00 0.00 1.63
777 778 5.893824 TCTTCTTCTAGATGTGCCACAGATA 59.106 40.000 3.00 0.00 0.00 1.98
778 779 4.713814 TCTTCTTCTAGATGTGCCACAGAT 59.286 41.667 3.00 0.00 0.00 2.90
779 780 4.089361 TCTTCTTCTAGATGTGCCACAGA 58.911 43.478 3.00 0.00 0.00 3.41
780 781 4.462508 TCTTCTTCTAGATGTGCCACAG 57.537 45.455 3.00 0.00 0.00 3.66
781 782 4.528206 TCTTCTTCTTCTAGATGTGCCACA 59.472 41.667 0.00 0.00 0.00 4.17
782 783 5.078411 TCTTCTTCTTCTAGATGTGCCAC 57.922 43.478 5.60 0.00 0.00 5.01
783 784 5.745312 TTCTTCTTCTTCTAGATGTGCCA 57.255 39.130 5.60 0.00 0.00 4.92
784 785 7.440523 TTTTTCTTCTTCTTCTAGATGTGCC 57.559 36.000 5.60 0.00 0.00 5.01
810 811 3.692406 GGACAGTCGAAGGCCCGT 61.692 66.667 0.00 0.00 0.00 5.28
812 813 4.452733 CCGGACAGTCGAAGGCCC 62.453 72.222 0.00 0.00 0.00 5.80
829 830 0.179000 ACATGGGATGCGAGGAGAAC 59.821 55.000 0.00 0.00 0.00 3.01
830 831 0.178767 CACATGGGATGCGAGGAGAA 59.821 55.000 0.00 0.00 0.00 2.87
1717 1767 4.200283 GCTCTACTGCTCGGCGCT 62.200 66.667 7.64 0.00 40.11 5.92
1957 2016 1.442769 ACTAGCTGTTGCAATCCACG 58.557 50.000 0.59 0.00 42.74 4.94
1986 2074 6.925610 TGGCAAGAGATTTACATACACATC 57.074 37.500 0.00 0.00 0.00 3.06
1990 2078 7.415541 GCAGAAATGGCAAGAGATTTACATACA 60.416 37.037 0.00 0.00 0.00 2.29
2085 2177 1.072154 CGTGCGTGCTATTCACATACG 60.072 52.381 0.00 0.00 45.92 3.06
2106 2198 2.285026 CGAACTAATGACCGCAATCGTG 60.285 50.000 0.00 0.00 0.00 4.35
2107 2199 1.924524 CGAACTAATGACCGCAATCGT 59.075 47.619 0.00 0.00 0.00 3.73
2108 2200 1.332028 GCGAACTAATGACCGCAATCG 60.332 52.381 0.00 0.00 46.04 3.34
2136 2228 1.267806 GGTGCCAGCGATGATAATTGG 59.732 52.381 0.06 0.00 0.00 3.16
2141 2233 1.681486 TTCCGGTGCCAGCGATGATA 61.681 55.000 19.13 0.00 42.41 2.15
2148 2240 1.212751 GTGATTTTCCGGTGCCAGC 59.787 57.895 0.00 0.00 0.00 4.85
2158 2250 3.128764 GGAGGAATTCGGTGGTGATTTTC 59.871 47.826 0.00 0.00 0.00 2.29
2195 2287 0.982673 GTGACTACTAAGCACGCGTG 59.017 55.000 34.01 34.01 0.00 5.34
2196 2288 0.109412 GGTGACTACTAAGCACGCGT 60.109 55.000 5.58 5.58 33.31 6.01
2197 2289 1.132199 CGGTGACTACTAAGCACGCG 61.132 60.000 3.53 3.53 33.31 6.01
2198 2290 0.169672 TCGGTGACTACTAAGCACGC 59.830 55.000 0.00 0.00 33.31 5.34
2199 2291 2.161012 TCTTCGGTGACTACTAAGCACG 59.839 50.000 0.00 0.00 33.31 5.34
2254 2346 8.623903 ACATGTCGTATGCAATGATAAGAAATT 58.376 29.630 0.00 0.00 0.00 1.82
2302 2395 0.173255 AACTTTTTGCAGCACAGCGT 59.827 45.000 0.00 0.00 37.31 5.07
2382 2475 6.730175 ACTCTATGTGTGATTAGCGAGTTAG 58.270 40.000 0.00 0.00 0.00 2.34
2408 2505 5.008415 ACGACGGAGATGGTTAGTAATACTG 59.992 44.000 2.68 0.00 0.00 2.74
2409 2506 5.128919 ACGACGGAGATGGTTAGTAATACT 58.871 41.667 0.00 0.00 0.00 2.12
2410 2507 5.008019 TGACGACGGAGATGGTTAGTAATAC 59.992 44.000 0.00 0.00 0.00 1.89
2413 2510 3.346315 TGACGACGGAGATGGTTAGTAA 58.654 45.455 0.00 0.00 0.00 2.24
2465 2562 3.732849 CACCTCCCCCTCCCAAGC 61.733 72.222 0.00 0.00 0.00 4.01
2466 2563 2.204151 ACACCTCCCCCTCCCAAG 60.204 66.667 0.00 0.00 0.00 3.61
2467 2564 2.204090 GACACCTCCCCCTCCCAA 60.204 66.667 0.00 0.00 0.00 4.12
2468 2565 4.348495 GGACACCTCCCCCTCCCA 62.348 72.222 0.00 0.00 0.00 4.37
2706 2822 3.686016 AGATTAACGCCATCAACCAACT 58.314 40.909 0.00 0.00 0.00 3.16
2710 2826 4.900635 ATCAAGATTAACGCCATCAACC 57.099 40.909 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.