Multiple sequence alignment - TraesCS7D01G361100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G361100 chr7D 100.000 5549 0 0 1473 7021 463887547 463893095 0.000000e+00 10248.0
1 TraesCS7D01G361100 chr7D 100.000 1037 0 0 1 1037 463886075 463887111 0.000000e+00 1916.0
2 TraesCS7D01G361100 chr7D 76.896 1121 241 16 4867 5978 355563520 355562409 2.780000e-173 619.0
3 TraesCS7D01G361100 chr7D 87.681 138 17 0 6858 6995 463961569 463961706 2.030000e-35 161.0
4 TraesCS7D01G361100 chr7B 97.322 3099 68 7 3357 6453 487806083 487802998 0.000000e+00 5249.0
5 TraesCS7D01G361100 chr7B 92.089 1833 105 12 1527 3344 487808046 487806239 0.000000e+00 2545.0
6 TraesCS7D01G361100 chr7B 92.566 565 32 3 6461 7021 487802883 487802325 0.000000e+00 802.0
7 TraesCS7D01G361100 chr7B 76.985 1121 240 15 4867 5978 307364532 307363421 5.980000e-175 625.0
8 TraesCS7D01G361100 chr7B 90.591 372 11 8 671 1037 487808866 487808514 8.240000e-129 472.0
9 TraesCS7D01G361100 chr7B 94.366 284 15 1 401 683 487809169 487808886 1.080000e-117 435.0
10 TraesCS7D01G361100 chr7B 89.399 283 16 5 1 273 487809543 487809265 1.870000e-90 344.0
11 TraesCS7D01G361100 chr7B 76.620 355 56 24 3028 3374 556669611 556669276 3.370000e-38 171.0
12 TraesCS7D01G361100 chr7B 88.406 138 16 0 6858 6995 487221861 487221724 4.360000e-37 167.0
13 TraesCS7D01G361100 chr7B 100.000 31 0 0 3034 3064 481451031 481451001 2.740000e-04 58.4
14 TraesCS7D01G361100 chr7A 93.427 2982 128 22 1582 4546 536514240 536511310 0.000000e+00 4359.0
15 TraesCS7D01G361100 chr7A 95.654 1887 45 19 4540 6419 536511228 536509372 0.000000e+00 2996.0
16 TraesCS7D01G361100 chr7A 76.930 1114 241 14 4867 5972 377979785 377980890 2.780000e-173 619.0
17 TraesCS7D01G361100 chr7A 92.366 393 21 1 6638 7021 536509241 536508849 1.030000e-152 551.0
18 TraesCS7D01G361100 chr7A 87.719 399 23 14 646 1035 536515163 536514782 6.460000e-120 442.0
19 TraesCS7D01G361100 chr7A 92.251 271 14 5 1 271 536515663 536515400 1.850000e-100 377.0
20 TraesCS7D01G361100 chr7A 86.957 138 18 0 6858 6995 536125119 536124982 9.430000e-34 156.0
21 TraesCS7D01G361100 chr7A 100.000 47 0 0 1473 1519 536514741 536514695 3.490000e-13 87.9
22 TraesCS7D01G361100 chr7A 92.857 42 2 1 3024 3064 193631371 193631412 7.610000e-05 60.2
23 TraesCS7D01G361100 chr3B 82.215 298 39 10 3070 3356 50913764 50913470 1.960000e-60 244.0
24 TraesCS7D01G361100 chr3B 100.000 29 0 0 3166 3194 13859422 13859450 4.000000e-03 54.7
25 TraesCS7D01G361100 chr2B 80.968 310 44 11 3071 3370 109065443 109065139 1.520000e-56 231.0
26 TraesCS7D01G361100 chr2B 78.963 347 58 11 3034 3370 109772193 109771852 9.170000e-54 222.0
27 TraesCS7D01G361100 chr2B 78.674 347 59 11 3034 3370 109144955 109144614 4.260000e-52 217.0
28 TraesCS7D01G361100 chr2B 94.915 59 3 0 6113 6171 30133370 30133312 7.500000e-15 93.5
29 TraesCS7D01G361100 chr2D 79.023 348 57 12 3034 3370 72618285 72617943 2.550000e-54 224.0
30 TraesCS7D01G361100 chr2D 80.323 310 46 11 3071 3370 72348066 72347762 3.300000e-53 220.0
31 TraesCS7D01G361100 chr5D 90.411 146 13 1 3229 3373 246308542 246308397 2.580000e-44 191.0
32 TraesCS7D01G361100 chr5D 87.931 58 7 0 1480 1537 444721532 444721589 1.260000e-07 69.4
33 TraesCS7D01G361100 chr3D 83.784 148 18 2 3223 3370 506190850 506190709 1.230000e-27 135.0
34 TraesCS7D01G361100 chr5B 87.931 58 7 0 1480 1537 541609320 541609377 1.260000e-07 69.4
35 TraesCS7D01G361100 chr5A 82.353 68 10 2 1490 1555 561653925 561653992 2.740000e-04 58.4
36 TraesCS7D01G361100 chr5A 100.000 29 0 0 3034 3062 629969191 629969163 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G361100 chr7D 463886075 463893095 7020 False 6082.000000 10248 100.000000 1 7021 2 chr7D.!!$F2 7020
1 TraesCS7D01G361100 chr7D 355562409 355563520 1111 True 619.000000 619 76.896000 4867 5978 1 chr7D.!!$R1 1111
2 TraesCS7D01G361100 chr7B 487802325 487809543 7218 True 1641.166667 5249 92.722167 1 7021 6 chr7B.!!$R5 7020
3 TraesCS7D01G361100 chr7B 307363421 307364532 1111 True 625.000000 625 76.985000 4867 5978 1 chr7B.!!$R1 1111
4 TraesCS7D01G361100 chr7A 536508849 536515663 6814 True 1468.816667 4359 93.569500 1 7021 6 chr7A.!!$R2 7020
5 TraesCS7D01G361100 chr7A 377979785 377980890 1105 False 619.000000 619 76.930000 4867 5972 1 chr7A.!!$F2 1105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 289 1.066143 CGGCATTGTCAACTACTCCCT 60.066 52.381 0.00 0.0 0.00 4.20 F
1543 2082 0.250234 TCCAGAAGGTGAGCAATCCG 59.750 55.000 0.00 0.0 35.89 4.18 F
1856 2421 0.314935 CTTGGCCTTTGATTGCGTGT 59.685 50.000 3.32 0.0 0.00 4.49 F
2014 2580 1.266718 CTGTATTTGGTGCAGCGTGTT 59.733 47.619 11.91 0.0 33.73 3.32 F
3068 3637 1.270094 CGTTGCTGTGGGACTTAGACA 60.270 52.381 0.00 0.0 0.00 3.41 F
3070 3639 1.419381 TGCTGTGGGACTTAGACACA 58.581 50.000 0.00 0.0 42.29 3.72 F
4757 5576 1.338973 GCCCCTGATGCATATGTTGTG 59.661 52.381 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2429 0.097674 GATGCACCATGCTCGACAAC 59.902 55.000 2.02 0.00 45.31 3.32 R
3030 3599 1.373497 GCGCGGGGTATCATCTCTG 60.373 63.158 8.83 0.00 0.00 3.35 R
3285 3864 2.042843 TGCCATCATGCATGCCCA 60.043 55.556 22.25 12.18 36.04 5.36 R
3419 4141 4.696455 ACCTTTGAAAACCATTGAGCAAG 58.304 39.130 0.00 0.00 0.00 4.01 R
4433 5162 1.000506 GTTTCGGACTGGTCAGCTACA 59.999 52.381 3.10 0.00 0.00 2.74 R
5210 6029 0.895530 TCATGAGTCCTCCACGGTTC 59.104 55.000 0.00 0.00 0.00 3.62 R
6536 7467 0.317854 GTTTGCTTTCTGGTGGCGTC 60.318 55.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 7.440255 TGCCTTTCTGTTAACTTTGTAGAGTAC 59.560 37.037 7.22 0.00 0.00 2.73
46 48 4.065789 AGAGTACTTGGTTTTGTAGCTGC 58.934 43.478 0.00 0.00 0.00 5.25
49 51 2.374184 ACTTGGTTTTGTAGCTGCACA 58.626 42.857 3.11 0.00 0.00 4.57
62 64 4.871993 AGCTGCACAATAGATTCTTTCG 57.128 40.909 1.02 0.00 0.00 3.46
206 217 3.466836 GATGCCGTTGATCTTGGACATA 58.533 45.455 0.00 0.00 0.00 2.29
209 220 4.269183 TGCCGTTGATCTTGGACATATTT 58.731 39.130 0.00 0.00 0.00 1.40
210 221 5.432645 TGCCGTTGATCTTGGACATATTTA 58.567 37.500 0.00 0.00 0.00 1.40
211 222 5.883115 TGCCGTTGATCTTGGACATATTTAA 59.117 36.000 0.00 0.00 0.00 1.52
212 223 6.545666 TGCCGTTGATCTTGGACATATTTAAT 59.454 34.615 0.00 0.00 0.00 1.40
249 260 1.289066 CTGTGTCGGTGGATCACGT 59.711 57.895 0.00 0.00 34.83 4.49
273 285 1.346395 TGGTCGGCATTGTCAACTACT 59.654 47.619 0.00 0.00 0.00 2.57
274 286 2.000447 GGTCGGCATTGTCAACTACTC 59.000 52.381 0.00 0.00 0.00 2.59
275 287 2.000447 GTCGGCATTGTCAACTACTCC 59.000 52.381 0.00 0.00 0.00 3.85
276 288 1.066430 TCGGCATTGTCAACTACTCCC 60.066 52.381 0.00 0.00 0.00 4.30
277 289 1.066143 CGGCATTGTCAACTACTCCCT 60.066 52.381 0.00 0.00 0.00 4.20
278 290 2.633488 GGCATTGTCAACTACTCCCTC 58.367 52.381 0.00 0.00 0.00 4.30
279 291 2.237392 GGCATTGTCAACTACTCCCTCT 59.763 50.000 0.00 0.00 0.00 3.69
280 292 3.265791 GCATTGTCAACTACTCCCTCTG 58.734 50.000 0.00 0.00 0.00 3.35
281 293 3.307059 GCATTGTCAACTACTCCCTCTGT 60.307 47.826 0.00 0.00 0.00 3.41
282 294 4.804261 GCATTGTCAACTACTCCCTCTGTT 60.804 45.833 0.00 0.00 0.00 3.16
283 295 4.602340 TTGTCAACTACTCCCTCTGTTC 57.398 45.455 0.00 0.00 0.00 3.18
284 296 2.897969 TGTCAACTACTCCCTCTGTTCC 59.102 50.000 0.00 0.00 0.00 3.62
285 297 2.897969 GTCAACTACTCCCTCTGTTCCA 59.102 50.000 0.00 0.00 0.00 3.53
286 298 3.515901 GTCAACTACTCCCTCTGTTCCAT 59.484 47.826 0.00 0.00 0.00 3.41
287 299 4.710375 GTCAACTACTCCCTCTGTTCCATA 59.290 45.833 0.00 0.00 0.00 2.74
288 300 5.187186 GTCAACTACTCCCTCTGTTCCATAA 59.813 44.000 0.00 0.00 0.00 1.90
289 301 5.964477 TCAACTACTCCCTCTGTTCCATAAT 59.036 40.000 0.00 0.00 0.00 1.28
290 302 5.878406 ACTACTCCCTCTGTTCCATAATG 57.122 43.478 0.00 0.00 0.00 1.90
291 303 3.567478 ACTCCCTCTGTTCCATAATGC 57.433 47.619 0.00 0.00 0.00 3.56
292 304 2.846206 ACTCCCTCTGTTCCATAATGCA 59.154 45.455 0.00 0.00 0.00 3.96
293 305 3.266772 ACTCCCTCTGTTCCATAATGCAA 59.733 43.478 0.00 0.00 0.00 4.08
294 306 3.881688 CTCCCTCTGTTCCATAATGCAAG 59.118 47.826 0.00 0.00 0.00 4.01
295 307 3.523157 TCCCTCTGTTCCATAATGCAAGA 59.477 43.478 0.00 0.00 0.00 3.02
296 308 3.629398 CCCTCTGTTCCATAATGCAAGAC 59.371 47.826 0.00 0.00 0.00 3.01
297 309 3.310774 CCTCTGTTCCATAATGCAAGACG 59.689 47.826 0.00 0.00 0.00 4.18
298 310 4.183865 CTCTGTTCCATAATGCAAGACGA 58.816 43.478 0.00 0.00 0.00 4.20
299 311 3.932710 TCTGTTCCATAATGCAAGACGAC 59.067 43.478 0.00 0.00 0.00 4.34
300 312 3.935203 CTGTTCCATAATGCAAGACGACT 59.065 43.478 0.00 0.00 0.00 4.18
301 313 5.079689 TGTTCCATAATGCAAGACGACTA 57.920 39.130 0.00 0.00 0.00 2.59
302 314 5.109210 TGTTCCATAATGCAAGACGACTAG 58.891 41.667 0.00 0.00 0.00 2.57
303 315 5.109903 GTTCCATAATGCAAGACGACTAGT 58.890 41.667 0.00 0.00 0.00 2.57
304 316 4.682787 TCCATAATGCAAGACGACTAGTG 58.317 43.478 0.00 0.00 0.00 2.74
305 317 4.159693 TCCATAATGCAAGACGACTAGTGT 59.840 41.667 0.00 0.00 0.00 3.55
306 318 4.870426 CCATAATGCAAGACGACTAGTGTT 59.130 41.667 0.00 0.00 36.72 3.32
307 319 6.040247 CCATAATGCAAGACGACTAGTGTTA 58.960 40.000 0.00 0.00 34.28 2.41
308 320 6.533723 CCATAATGCAAGACGACTAGTGTTAA 59.466 38.462 0.00 0.00 34.28 2.01
309 321 7.064134 CCATAATGCAAGACGACTAGTGTTAAA 59.936 37.037 0.00 0.00 34.28 1.52
310 322 6.854496 AATGCAAGACGACTAGTGTTAAAA 57.146 33.333 0.00 0.00 34.28 1.52
311 323 6.854496 ATGCAAGACGACTAGTGTTAAAAA 57.146 33.333 0.00 0.00 34.28 1.94
356 368 1.779569 AGTACGAAGTTGGAAGTGCG 58.220 50.000 0.00 0.00 37.78 5.34
377 389 6.539103 GTGCGGGAAGAAATAAATACTCTCTT 59.461 38.462 0.00 0.00 0.00 2.85
381 393 8.604890 CGGGAAGAAATAAATACTCTCTTTGTC 58.395 37.037 0.00 0.00 0.00 3.18
395 407 5.551233 TCTCTTTGTCCCACTAATGTCAAG 58.449 41.667 0.00 0.00 0.00 3.02
397 409 5.551233 TCTTTGTCCCACTAATGTCAAGAG 58.449 41.667 0.00 0.00 0.00 2.85
398 410 4.974645 TTGTCCCACTAATGTCAAGAGT 57.025 40.909 0.00 0.00 0.00 3.24
413 462 3.255888 TCAAGAGTACTGTCAAGCGTGAT 59.744 43.478 5.42 0.00 35.80 3.06
414 463 3.944055 AGAGTACTGTCAAGCGTGATT 57.056 42.857 5.42 0.00 35.80 2.57
418 467 1.726853 ACTGTCAAGCGTGATTAGGC 58.273 50.000 5.42 0.00 35.80 3.93
470 519 3.102052 TGTACAACCTTCGTCCAGAAC 57.898 47.619 0.00 0.00 34.66 3.01
595 644 3.615496 GTGCCACCTAATACGTACAGTTG 59.385 47.826 0.00 0.00 0.00 3.16
661 779 4.625607 AAGAGGGTAAAGTGTCTTCCAG 57.374 45.455 0.00 0.00 0.00 3.86
805 956 5.982465 ATTTTGAATTTTGTTCCACACGG 57.018 34.783 0.00 0.00 0.00 4.94
834 985 5.737860 ACGATACGTAATCCCTTTCCTTTT 58.262 37.500 0.00 0.00 38.73 2.27
1009 1173 3.860605 CCCCCGACATGGCGATCA 61.861 66.667 25.84 0.00 35.87 2.92
1543 2082 0.250234 TCCAGAAGGTGAGCAATCCG 59.750 55.000 0.00 0.00 35.89 4.18
1590 2146 2.279073 CTCTAGGTGGCCTCCCGA 59.721 66.667 20.36 15.35 34.61 5.14
1615 2171 3.227276 CGCCGGTGGATCTAGCCT 61.227 66.667 7.26 0.00 0.00 4.58
1856 2421 0.314935 CTTGGCCTTTGATTGCGTGT 59.685 50.000 3.32 0.00 0.00 4.49
1864 2429 4.266029 GCCTTTGATTGCGTGTGATTAATG 59.734 41.667 0.00 0.00 0.00 1.90
1906 2471 2.037144 GGTTAGGCTCCTCGTTCCATA 58.963 52.381 0.00 0.00 0.00 2.74
1991 2556 2.002586 GTGAGATCCGTTGATGTGGTG 58.997 52.381 0.00 0.00 0.00 4.17
1998 2563 2.365941 TCCGTTGATGTGGTGAACTGTA 59.634 45.455 0.00 0.00 0.00 2.74
2014 2580 1.266718 CTGTATTTGGTGCAGCGTGTT 59.733 47.619 11.91 0.00 33.73 3.32
2098 2666 3.181501 TGGTTTCTGCTTGTTTGAGTTCG 60.182 43.478 0.00 0.00 0.00 3.95
2128 2697 1.511958 GTAGACACGTTATCGCTTCGC 59.488 52.381 0.00 0.00 41.18 4.70
2150 2719 4.035017 CGTCTTGTTTTCATCGCTGTTTT 58.965 39.130 0.00 0.00 0.00 2.43
2161 2730 8.547967 TTTCATCGCTGTTTTATTTAGTCTCT 57.452 30.769 0.00 0.00 0.00 3.10
2195 2764 8.723942 ATTGGAGAACATGTATTTACTGAGTC 57.276 34.615 0.00 0.00 0.00 3.36
2214 2783 3.681417 AGTCGTAAACTATTTGGGCGTTC 59.319 43.478 0.00 0.00 36.07 3.95
2226 2795 1.271163 TGGGCGTTCTGGGTAGAAAAG 60.271 52.381 0.00 0.00 44.12 2.27
2275 2844 4.202620 TGTTGGTGGGTTTCATGGAGATTA 60.203 41.667 0.00 0.00 0.00 1.75
2311 2880 3.181476 ACAAACCTTGTGAAAGTGGCATC 60.181 43.478 0.00 0.00 43.48 3.91
2325 2894 1.955778 TGGCATCAACTGAAGTGTTGG 59.044 47.619 7.40 0.00 45.15 3.77
2328 2897 2.351157 GCATCAACTGAAGTGTTGGCTC 60.351 50.000 7.40 0.00 45.15 4.70
2378 2947 1.635844 TATGACGGCTGCAAACTACG 58.364 50.000 0.50 0.00 0.00 3.51
2387 2956 2.031683 GCTGCAAACTACGACAAACAGT 59.968 45.455 0.00 0.00 0.00 3.55
2423 2992 9.913451 AATTAAAATGTTTGAAACGTCAACATG 57.087 25.926 2.90 0.00 43.52 3.21
2491 3060 8.585471 AGAATGTCCACATCATCTAAAAACAT 57.415 30.769 0.00 0.00 35.10 2.71
2506 3075 8.929260 TCTAAAAACATCATGCATATCCTGAT 57.071 30.769 0.00 0.00 0.00 2.90
2524 3093 5.424252 TCCTGATGTTCCTTTCCGTTATACT 59.576 40.000 0.00 0.00 0.00 2.12
2602 3171 9.132521 CATTTGGTTCTCTTGTTTGAATGATAC 57.867 33.333 0.00 0.00 0.00 2.24
2753 3322 4.338118 TGTTGTTTCTTGTTGCCTCCTAAG 59.662 41.667 0.00 0.00 0.00 2.18
2754 3323 4.164843 TGTTTCTTGTTGCCTCCTAAGT 57.835 40.909 0.00 0.00 0.00 2.24
2755 3324 4.134563 TGTTTCTTGTTGCCTCCTAAGTC 58.865 43.478 0.00 0.00 0.00 3.01
2756 3325 3.418684 TTCTTGTTGCCTCCTAAGTCC 57.581 47.619 0.00 0.00 0.00 3.85
2757 3326 2.621070 TCTTGTTGCCTCCTAAGTCCT 58.379 47.619 0.00 0.00 0.00 3.85
2758 3327 3.786553 TCTTGTTGCCTCCTAAGTCCTA 58.213 45.455 0.00 0.00 0.00 2.94
2759 3328 4.164981 TCTTGTTGCCTCCTAAGTCCTAA 58.835 43.478 0.00 0.00 0.00 2.69
2801 3370 6.495181 GGAGATCAGGAGAACAGGATACATTA 59.505 42.308 0.00 0.00 41.41 1.90
2847 3416 1.755959 ACACTTGCATGCTGTTTTCCA 59.244 42.857 20.33 0.00 0.00 3.53
2921 3490 3.198853 GTCCTCTTGTTTATGGAGCTCCT 59.801 47.826 32.28 20.00 36.82 3.69
2922 3491 4.406003 GTCCTCTTGTTTATGGAGCTCCTA 59.594 45.833 32.28 19.38 36.82 2.94
2935 3504 1.806542 AGCTCCTATTGTTGTGTTGCG 59.193 47.619 0.00 0.00 0.00 4.85
3030 3599 8.843262 ACAGTTGTATAACCAAACTTCTAAACC 58.157 33.333 0.00 0.00 37.52 3.27
3067 3636 1.429463 CGTTGCTGTGGGACTTAGAC 58.571 55.000 0.00 0.00 0.00 2.59
3068 3637 1.270094 CGTTGCTGTGGGACTTAGACA 60.270 52.381 0.00 0.00 0.00 3.41
3070 3639 1.419381 TGCTGTGGGACTTAGACACA 58.581 50.000 0.00 0.00 42.29 3.72
3076 3645 5.818678 TGTGGGACTTAGACACAGTTATT 57.181 39.130 0.00 0.00 39.92 1.40
3077 3646 6.182507 TGTGGGACTTAGACACAGTTATTT 57.817 37.500 0.00 0.00 39.92 1.40
3078 3647 6.228258 TGTGGGACTTAGACACAGTTATTTC 58.772 40.000 0.00 0.00 39.92 2.17
3079 3648 6.042781 TGTGGGACTTAGACACAGTTATTTCT 59.957 38.462 0.00 0.00 39.92 2.52
3344 3923 6.055588 TGCAGGTTAGGATAATTGAGTTAGC 58.944 40.000 0.00 0.00 0.00 3.09
3419 4141 7.816995 CCATAGTTTCCTGTCTATATTCTCTGC 59.183 40.741 0.00 0.00 0.00 4.26
3701 4424 1.605232 CCCGTTTGTTCAAGGGTGTAC 59.395 52.381 2.79 0.00 38.58 2.90
3727 4450 8.764287 CAGAGCACGACAACATAATATGATAAA 58.236 33.333 7.33 0.00 0.00 1.40
3903 4627 8.299570 ACATGTATGTTCTGATTTTGAAGTTCC 58.700 33.333 0.00 0.00 37.90 3.62
4411 5140 2.954318 GCATGCCTCATGGTCTAATTGT 59.046 45.455 6.36 0.00 41.64 2.71
4416 5145 5.324409 TGCCTCATGGTCTAATTGTTCTTT 58.676 37.500 0.00 0.00 35.27 2.52
4618 5437 6.370166 GCCTATCATAACTTGCCTATTCACTC 59.630 42.308 0.00 0.00 0.00 3.51
4679 5498 4.080919 TGGGATGACAAGAATCCTACAGTG 60.081 45.833 2.68 0.00 42.83 3.66
4757 5576 1.338973 GCCCCTGATGCATATGTTGTG 59.661 52.381 0.00 0.00 0.00 3.33
5244 6063 3.521126 ACTCATGACTGCTATGGTCCTTT 59.479 43.478 0.00 0.00 33.22 3.11
5327 6146 1.480954 GGCACCGAGTGGAAGAAGATA 59.519 52.381 6.23 0.00 39.21 1.98
6032 6851 4.677584 AGATCGACTGATGTAGCAACTTC 58.322 43.478 0.00 0.00 34.09 3.01
6062 6881 4.411927 AGTTTCCTGTCTGCTTCTAGAGA 58.588 43.478 0.00 0.00 0.00 3.10
6063 6882 4.219725 AGTTTCCTGTCTGCTTCTAGAGAC 59.780 45.833 3.49 3.49 39.31 3.36
6100 6919 7.205297 AGGTTTTCTTGCAATATCATACATGC 58.795 34.615 0.00 0.00 39.22 4.06
6116 6935 1.605232 CATGCTGCTGTTCAAGTGACA 59.395 47.619 0.00 0.00 0.00 3.58
6117 6936 1.971481 TGCTGCTGTTCAAGTGACAT 58.029 45.000 0.00 0.00 0.00 3.06
6184 7005 5.958987 GGTAGAATATGTAGCCTGGTAGGAT 59.041 44.000 0.00 0.00 37.67 3.24
6200 7021 6.079336 TGGTAGGATTAAGAATCACCGGATA 58.921 40.000 9.46 0.00 36.98 2.59
6297 7120 3.427573 TCCTGTACTGTTTCGGATCTCA 58.572 45.455 0.00 0.00 0.00 3.27
6344 7168 6.647481 TGTGTTTTATGTCTTACACGCAGTAT 59.353 34.615 0.00 0.00 41.61 2.12
6428 7252 1.211949 GTACCCTGATGCTGGGCTAAA 59.788 52.381 9.05 0.00 45.01 1.85
6429 7253 0.257039 ACCCTGATGCTGGGCTAAAG 59.743 55.000 9.05 0.00 45.01 1.85
6439 7263 0.248289 TGGGCTAAAGGCGTACTGTC 59.752 55.000 0.00 0.00 42.94 3.51
6453 7277 5.323105 GCGTACTGTCTGTTACTCTCTTAC 58.677 45.833 0.00 0.00 0.00 2.34
6455 7279 6.312426 GCGTACTGTCTGTTACTCTCTTACTA 59.688 42.308 0.00 0.00 0.00 1.82
6457 7281 8.329583 CGTACTGTCTGTTACTCTCTTACTATG 58.670 40.741 0.00 0.00 0.00 2.23
6458 7282 7.633193 ACTGTCTGTTACTCTCTTACTATGG 57.367 40.000 0.00 0.00 0.00 2.74
6489 7420 9.520515 AACTGTGTACCTGAATCTTAAAATCAT 57.479 29.630 0.00 0.00 0.00 2.45
6540 7471 9.774742 AACAATTATCTTTTCATTAGAAGACGC 57.225 29.630 0.00 0.00 34.96 5.19
6541 7472 8.398665 ACAATTATCTTTTCATTAGAAGACGCC 58.601 33.333 0.00 0.00 34.96 5.68
6542 7473 8.397906 CAATTATCTTTTCATTAGAAGACGCCA 58.602 33.333 0.00 0.00 34.96 5.69
6543 7474 5.803020 ATCTTTTCATTAGAAGACGCCAC 57.197 39.130 0.00 0.00 34.96 5.01
6553 7492 0.465460 AAGACGCCACCAGAAAGCAA 60.465 50.000 0.00 0.00 0.00 3.91
6596 7537 7.807977 ACAACTTTATTCAGTGAGAATGTGT 57.192 32.000 0.00 0.87 46.24 3.72
6604 7545 9.725019 TTATTCAGTGAGAATGTGTAGTGAAAT 57.275 29.630 0.00 0.00 46.24 2.17
6619 7560 9.866936 GTGTAGTGAAATACATTTTACGTTTGA 57.133 29.630 0.00 0.00 40.09 2.69
6636 7577 7.956420 ACGTTTGACAACTACTGATATTTGA 57.044 32.000 0.00 0.00 0.00 2.69
6665 7606 0.103937 TGGAAGGCCTTTGTTTTGCG 59.896 50.000 21.54 0.00 34.31 4.85
6670 7611 1.592400 GCCTTTGTTTTGCGCTGCT 60.592 52.632 9.73 0.00 0.00 4.24
6725 7666 0.600557 ATGCGAGGAGGAGCTTATCG 59.399 55.000 0.00 0.00 36.51 2.92
6841 7797 2.172372 ACGTCGAGCTCGCGTATCT 61.172 57.895 38.01 23.63 44.89 1.98
6843 7799 0.231534 CGTCGAGCTCGCGTATCTTA 59.768 55.000 30.99 13.67 39.60 2.10
6855 7811 1.697432 CGTATCTTATGGGCCCCTTCA 59.303 52.381 22.27 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 5.120363 GCAGCTACAAAACCAAGTACTCTAC 59.880 44.000 0.00 0.00 0.00 2.59
30 32 3.435105 TTGTGCAGCTACAAAACCAAG 57.565 42.857 0.00 0.00 37.60 3.61
46 48 5.004821 CACTCGGTCGAAAGAATCTATTGTG 59.995 44.000 0.00 0.00 45.01 3.33
49 51 5.326200 ACACTCGGTCGAAAGAATCTATT 57.674 39.130 0.00 0.00 45.01 1.73
62 64 6.920569 AAATTCCACATATAACACTCGGTC 57.079 37.500 0.00 0.00 0.00 4.79
133 144 4.154347 CTCTCAGGAGCCGCCCAC 62.154 72.222 1.37 0.00 37.37 4.61
206 217 5.237127 GCCGCCGGTAGTAGTTTAATTAAAT 59.763 40.000 13.54 6.13 0.00 1.40
209 220 3.492482 GGCCGCCGGTAGTAGTTTAATTA 60.492 47.826 4.45 0.00 0.00 1.40
210 221 2.554142 GCCGCCGGTAGTAGTTTAATT 58.446 47.619 4.45 0.00 0.00 1.40
211 222 1.202568 GGCCGCCGGTAGTAGTTTAAT 60.203 52.381 4.45 0.00 0.00 1.40
212 223 0.175531 GGCCGCCGGTAGTAGTTTAA 59.824 55.000 4.45 0.00 0.00 1.52
249 260 0.892814 TTGACAATGCCGACCATGCA 60.893 50.000 0.00 0.00 43.97 3.96
280 292 5.005779 CACTAGTCGTCTTGCATTATGGAAC 59.994 44.000 0.00 0.00 0.00 3.62
281 293 5.109210 CACTAGTCGTCTTGCATTATGGAA 58.891 41.667 0.00 0.00 0.00 3.53
282 294 4.159693 ACACTAGTCGTCTTGCATTATGGA 59.840 41.667 0.00 0.00 0.00 3.41
283 295 4.433615 ACACTAGTCGTCTTGCATTATGG 58.566 43.478 0.00 0.00 0.00 2.74
284 296 7.520119 TTAACACTAGTCGTCTTGCATTATG 57.480 36.000 0.00 0.00 0.00 1.90
285 297 8.542497 TTTTAACACTAGTCGTCTTGCATTAT 57.458 30.769 0.00 0.00 0.00 1.28
286 298 7.949903 TTTTAACACTAGTCGTCTTGCATTA 57.050 32.000 0.00 0.00 0.00 1.90
287 299 6.854496 TTTTAACACTAGTCGTCTTGCATT 57.146 33.333 0.00 0.00 0.00 3.56
288 300 6.854496 TTTTTAACACTAGTCGTCTTGCAT 57.146 33.333 0.00 0.00 0.00 3.96
320 332 9.132923 ACTTCGTACTTTCTCCATCTCATAATA 57.867 33.333 0.00 0.00 0.00 0.98
321 333 8.012957 ACTTCGTACTTTCTCCATCTCATAAT 57.987 34.615 0.00 0.00 0.00 1.28
322 334 7.406031 ACTTCGTACTTTCTCCATCTCATAA 57.594 36.000 0.00 0.00 0.00 1.90
323 335 7.258441 CAACTTCGTACTTTCTCCATCTCATA 58.742 38.462 0.00 0.00 0.00 2.15
324 336 5.923733 ACTTCGTACTTTCTCCATCTCAT 57.076 39.130 0.00 0.00 0.00 2.90
325 337 5.470368 CAACTTCGTACTTTCTCCATCTCA 58.530 41.667 0.00 0.00 0.00 3.27
326 338 4.865365 CCAACTTCGTACTTTCTCCATCTC 59.135 45.833 0.00 0.00 0.00 2.75
327 339 4.527038 TCCAACTTCGTACTTTCTCCATCT 59.473 41.667 0.00 0.00 0.00 2.90
328 340 4.817517 TCCAACTTCGTACTTTCTCCATC 58.182 43.478 0.00 0.00 0.00 3.51
329 341 4.884668 TCCAACTTCGTACTTTCTCCAT 57.115 40.909 0.00 0.00 0.00 3.41
330 342 4.100498 ACTTCCAACTTCGTACTTTCTCCA 59.900 41.667 0.00 0.00 0.00 3.86
331 343 4.448060 CACTTCCAACTTCGTACTTTCTCC 59.552 45.833 0.00 0.00 0.00 3.71
332 344 4.084485 GCACTTCCAACTTCGTACTTTCTC 60.084 45.833 0.00 0.00 0.00 2.87
333 345 3.808174 GCACTTCCAACTTCGTACTTTCT 59.192 43.478 0.00 0.00 0.00 2.52
334 346 3.362693 CGCACTTCCAACTTCGTACTTTC 60.363 47.826 0.00 0.00 0.00 2.62
335 347 2.542595 CGCACTTCCAACTTCGTACTTT 59.457 45.455 0.00 0.00 0.00 2.66
336 348 2.132762 CGCACTTCCAACTTCGTACTT 58.867 47.619 0.00 0.00 0.00 2.24
337 349 1.604693 CCGCACTTCCAACTTCGTACT 60.605 52.381 0.00 0.00 0.00 2.73
338 350 0.788391 CCGCACTTCCAACTTCGTAC 59.212 55.000 0.00 0.00 0.00 3.67
339 351 0.320073 CCCGCACTTCCAACTTCGTA 60.320 55.000 0.00 0.00 0.00 3.43
340 352 1.597027 CCCGCACTTCCAACTTCGT 60.597 57.895 0.00 0.00 0.00 3.85
341 353 0.882927 TTCCCGCACTTCCAACTTCG 60.883 55.000 0.00 0.00 0.00 3.79
356 368 8.894731 GGACAAAGAGAGTATTTATTTCTTCCC 58.105 37.037 0.00 0.00 0.00 3.97
377 389 4.974645 ACTCTTGACATTAGTGGGACAA 57.025 40.909 0.00 0.00 44.16 3.18
381 393 5.047306 TGACAGTACTCTTGACATTAGTGGG 60.047 44.000 0.00 0.00 0.00 4.61
388 400 3.005897 ACGCTTGACAGTACTCTTGACAT 59.994 43.478 0.00 0.00 0.00 3.06
395 407 4.106197 CCTAATCACGCTTGACAGTACTC 58.894 47.826 0.00 0.00 33.38 2.59
397 409 2.603560 GCCTAATCACGCTTGACAGTAC 59.396 50.000 0.00 0.00 33.38 2.73
398 410 2.734175 CGCCTAATCACGCTTGACAGTA 60.734 50.000 0.00 0.00 33.38 2.74
427 476 6.098266 ACAAAACAACTATCCCTCTTTGCTTT 59.902 34.615 0.00 0.00 0.00 3.51
524 573 9.753674 TTGACAATATGAAATACTTCCTCCTTT 57.246 29.630 0.00 0.00 0.00 3.11
526 575 9.753674 TTTTGACAATATGAAATACTTCCTCCT 57.246 29.630 0.00 0.00 0.00 3.69
644 762 2.561478 TGCTGGAAGACACTTTACCC 57.439 50.000 0.00 0.00 34.07 3.69
661 779 4.926860 AGAAATTTTTAGGCGCATTTGC 57.073 36.364 10.83 0.00 37.78 3.68
669 787 6.749139 AGTCACCAGAAAGAAATTTTTAGGC 58.251 36.000 0.00 0.00 0.00 3.93
805 956 4.170292 AGGGATTACGTATCGTATGTGC 57.830 45.455 0.00 1.75 41.97 4.57
834 985 1.651099 CGCGATTCGTCGACGTAATA 58.349 50.000 34.40 19.66 40.80 0.98
869 1020 1.080569 CGGAAGGGTGCAATGCAAC 60.081 57.895 15.99 15.99 46.74 4.17
932 1092 3.716872 GAGAAGAGAAATATGGGTGGGGA 59.283 47.826 0.00 0.00 0.00 4.81
972 1136 4.162690 GCGATGCGGGGGAGAAGT 62.163 66.667 0.00 0.00 0.00 3.01
985 1149 3.550431 CATGTCGGGGGAGGCGAT 61.550 66.667 0.00 0.00 0.00 4.58
1519 1683 0.318441 TGCTCACCTTCTGGAAGTCG 59.682 55.000 9.15 1.01 36.72 4.18
1520 1684 2.550830 TTGCTCACCTTCTGGAAGTC 57.449 50.000 9.15 0.00 36.72 3.01
1521 1685 2.290577 GGATTGCTCACCTTCTGGAAGT 60.291 50.000 9.15 0.00 36.72 3.01
1522 1686 2.363683 GGATTGCTCACCTTCTGGAAG 58.636 52.381 3.57 3.57 38.14 3.46
1523 1687 1.339055 CGGATTGCTCACCTTCTGGAA 60.339 52.381 0.00 0.00 37.04 3.53
1524 1688 0.250234 CGGATTGCTCACCTTCTGGA 59.750 55.000 0.00 0.00 37.04 3.86
1525 1689 1.372087 GCGGATTGCTCACCTTCTGG 61.372 60.000 0.00 0.00 41.73 3.86
1559 2102 2.104451 ACCTAGAGCTTAGATCCGACGA 59.896 50.000 0.00 0.00 0.00 4.20
1595 2151 3.900892 CTAGATCCACCGGCGCGT 61.901 66.667 8.43 0.00 0.00 6.01
1856 2421 4.094739 CACCATGCTCGACAACATTAATCA 59.905 41.667 0.00 0.00 0.00 2.57
1864 2429 0.097674 GATGCACCATGCTCGACAAC 59.902 55.000 2.02 0.00 45.31 3.32
1906 2471 1.194781 ACAACATCAGGAGTCGGCCT 61.195 55.000 0.00 0.00 39.37 5.19
1991 2556 1.535462 ACGCTGCACCAAATACAGTTC 59.465 47.619 0.00 0.00 33.87 3.01
1998 2563 1.363443 CCAACACGCTGCACCAAAT 59.637 52.632 0.00 0.00 0.00 2.32
2014 2580 3.689858 GCACCCATCCCACAATAATACCA 60.690 47.826 0.00 0.00 0.00 3.25
2098 2666 5.276773 CGATAACGTGTCTACACCTCTAGAC 60.277 48.000 7.63 0.00 43.66 2.59
2128 2697 2.949714 ACAGCGATGAAAACAAGACG 57.050 45.000 8.12 0.00 0.00 4.18
2129 2698 7.623268 AATAAAACAGCGATGAAAACAAGAC 57.377 32.000 8.12 0.00 0.00 3.01
2195 2764 3.181514 CCAGAACGCCCAAATAGTTTACG 60.182 47.826 0.00 0.00 0.00 3.18
2214 2783 5.485209 ACCTAACTGACTTTTCTACCCAG 57.515 43.478 0.00 0.00 0.00 4.45
2226 2795 6.461640 ACACAACAATAGGTACCTAACTGAC 58.538 40.000 28.53 0.00 31.73 3.51
2275 2844 2.760092 AGGTTTGTGATTGCAGTGTTGT 59.240 40.909 0.00 0.00 0.00 3.32
2311 2880 0.588252 CGGAGCCAACACTTCAGTTG 59.412 55.000 0.00 0.00 46.44 3.16
2325 2894 1.202428 CCCTAGCAAGTTAGACGGAGC 60.202 57.143 0.00 0.00 0.00 4.70
2328 2897 0.179081 GGCCCTAGCAAGTTAGACGG 60.179 60.000 0.00 0.00 42.56 4.79
2416 2985 7.609918 ACAAACATACTACATAAGGCATGTTGA 59.390 33.333 6.44 0.00 46.01 3.18
2423 2992 8.888579 ACATCTACAAACATACTACATAAGGC 57.111 34.615 0.00 0.00 0.00 4.35
2491 3060 4.987963 AGGAACATCAGGATATGCATGA 57.012 40.909 10.16 0.00 42.12 3.07
2602 3171 8.713737 TTCTACACATTTGATTCTCATCAGAG 57.286 34.615 0.00 0.00 40.66 3.35
2753 3322 5.390567 CCTGAAATTGTAACTGCGTTAGGAC 60.391 44.000 2.13 0.00 0.00 3.85
2754 3323 4.693566 CCTGAAATTGTAACTGCGTTAGGA 59.306 41.667 2.13 0.00 0.00 2.94
2755 3324 4.693566 TCCTGAAATTGTAACTGCGTTAGG 59.306 41.667 2.13 0.00 0.00 2.69
2756 3325 5.637810 TCTCCTGAAATTGTAACTGCGTTAG 59.362 40.000 2.13 0.00 0.00 2.34
2757 3326 5.543714 TCTCCTGAAATTGTAACTGCGTTA 58.456 37.500 0.00 0.00 0.00 3.18
2758 3327 4.385825 TCTCCTGAAATTGTAACTGCGTT 58.614 39.130 0.02 0.02 0.00 4.84
2759 3328 4.002906 TCTCCTGAAATTGTAACTGCGT 57.997 40.909 0.00 0.00 0.00 5.24
2847 3416 4.846779 AACACGTCAATTTAATGGCACT 57.153 36.364 0.00 0.00 0.00 4.40
2921 3490 2.683362 TCACCAACGCAACACAACAATA 59.317 40.909 0.00 0.00 0.00 1.90
2922 3491 1.474478 TCACCAACGCAACACAACAAT 59.526 42.857 0.00 0.00 0.00 2.71
2935 3504 3.058914 CCGAAGAAATGACAGTCACCAAC 60.059 47.826 5.05 0.00 0.00 3.77
3030 3599 1.373497 GCGCGGGGTATCATCTCTG 60.373 63.158 8.83 0.00 0.00 3.35
3067 3636 7.988737 TGCCAAATCTCATAGAAATAACTGTG 58.011 34.615 0.00 0.00 0.00 3.66
3068 3637 7.831193 ACTGCCAAATCTCATAGAAATAACTGT 59.169 33.333 0.00 0.00 0.00 3.55
3074 3643 8.985315 TTCATACTGCCAAATCTCATAGAAAT 57.015 30.769 0.00 0.00 0.00 2.17
3075 3644 8.677300 GTTTCATACTGCCAAATCTCATAGAAA 58.323 33.333 0.00 0.00 0.00 2.52
3076 3645 8.049117 AGTTTCATACTGCCAAATCTCATAGAA 58.951 33.333 0.00 0.00 35.19 2.10
3077 3646 7.568349 AGTTTCATACTGCCAAATCTCATAGA 58.432 34.615 0.00 0.00 35.19 1.98
3078 3647 7.798596 AGTTTCATACTGCCAAATCTCATAG 57.201 36.000 0.00 0.00 35.19 2.23
3079 3648 7.828717 TGAAGTTTCATACTGCCAAATCTCATA 59.171 33.333 0.00 0.00 37.12 2.15
3266 3845 7.404671 TGCCCAACTAAATTTAATTCTCTCC 57.595 36.000 0.00 0.00 0.00 3.71
3285 3864 2.042843 TGCCATCATGCATGCCCA 60.043 55.556 22.25 12.18 36.04 5.36
3344 3923 9.417561 TCTATATACCTAAATAGTTGATCCCCG 57.582 37.037 0.00 0.00 0.00 5.73
3397 4119 7.271511 CAAGCAGAGAATATAGACAGGAAACT 58.728 38.462 0.00 0.00 46.44 2.66
3419 4141 4.696455 ACCTTTGAAAACCATTGAGCAAG 58.304 39.130 0.00 0.00 0.00 4.01
3701 4424 6.775939 ATCATATTATGTTGTCGTGCTCTG 57.224 37.500 3.67 0.00 0.00 3.35
3903 4627 6.676950 TGTTAATCAACTGGCAATACAACAG 58.323 36.000 0.00 0.00 35.56 3.16
4416 5145 6.943146 TCAGCTACACATACCCATAACAAAAA 59.057 34.615 0.00 0.00 0.00 1.94
4433 5162 1.000506 GTTTCGGACTGGTCAGCTACA 59.999 52.381 3.10 0.00 0.00 2.74
5210 6029 0.895530 TCATGAGTCCTCCACGGTTC 59.104 55.000 0.00 0.00 0.00 3.62
5244 6063 2.166907 ACACCCATGAAAACCCACAA 57.833 45.000 0.00 0.00 0.00 3.33
5327 6146 2.452600 TGAAGGCAGTTTTGAGGGTT 57.547 45.000 0.00 0.00 0.00 4.11
5615 6434 1.412079 AGACAGCACCAAATGGCAAA 58.588 45.000 0.00 0.00 39.32 3.68
6032 6851 4.583871 AGCAGACAGGAAACTTATCTTGG 58.416 43.478 0.00 0.00 40.21 3.61
6062 6881 1.071857 GAAAACCTTGTCCGGGAGAGT 59.928 52.381 0.00 0.00 0.00 3.24
6063 6882 1.348036 AGAAAACCTTGTCCGGGAGAG 59.652 52.381 0.00 0.00 0.00 3.20
6100 6919 7.254692 CCTTCATATATGTCACTTGAACAGCAG 60.255 40.741 12.42 0.00 0.00 4.24
6116 6935 8.727149 TCTCAAATCCCAGTTTCCTTCATATAT 58.273 33.333 0.00 0.00 0.00 0.86
6117 6936 8.101309 TCTCAAATCCCAGTTTCCTTCATATA 57.899 34.615 0.00 0.00 0.00 0.86
6184 7005 5.069383 TCCGTGAATATCCGGTGATTCTTAA 59.931 40.000 22.85 8.28 44.51 1.85
6200 7021 4.808414 TCTCTCTTCAACATCCGTGAAT 57.192 40.909 0.00 0.00 0.00 2.57
6297 7120 5.305128 ACAAATGGAACAGACATGGTCAATT 59.695 36.000 0.00 0.00 46.86 2.32
6344 7168 2.025981 AGAAATAGTGCCATGTCCAGCA 60.026 45.455 0.00 0.00 36.44 4.41
6428 7252 2.748532 GAGAGTAACAGACAGTACGCCT 59.251 50.000 0.00 0.00 0.00 5.52
6429 7253 2.748532 AGAGAGTAACAGACAGTACGCC 59.251 50.000 0.00 0.00 0.00 5.68
6453 7277 7.400599 TTCAGGTACACAGTTACTACCATAG 57.599 40.000 5.04 0.00 33.54 2.23
6455 7279 6.668283 AGATTCAGGTACACAGTTACTACCAT 59.332 38.462 5.04 0.00 33.54 3.55
6457 7281 6.527057 AGATTCAGGTACACAGTTACTACC 57.473 41.667 0.00 0.00 0.00 3.18
6458 7282 9.918630 TTTAAGATTCAGGTACACAGTTACTAC 57.081 33.333 0.00 0.00 0.00 2.73
6487 7418 9.123709 CTGAAATTTTCATTGATTGGCAAAATG 57.876 29.630 15.36 15.36 40.48 2.32
6489 7420 8.447924 TCTGAAATTTTCATTGATTGGCAAAA 57.552 26.923 12.04 0.00 40.48 2.44
6492 7423 6.990939 TGTTCTGAAATTTTCATTGATTGGCA 59.009 30.769 12.04 0.00 39.30 4.92
6533 7464 0.884704 TGCTTTCTGGTGGCGTCTTC 60.885 55.000 0.00 0.00 0.00 2.87
6535 7466 0.465460 TTTGCTTTCTGGTGGCGTCT 60.465 50.000 0.00 0.00 0.00 4.18
6536 7467 0.317854 GTTTGCTTTCTGGTGGCGTC 60.318 55.000 0.00 0.00 0.00 5.19
6537 7468 0.751643 AGTTTGCTTTCTGGTGGCGT 60.752 50.000 0.00 0.00 0.00 5.68
6538 7469 0.385390 AAGTTTGCTTTCTGGTGGCG 59.615 50.000 0.00 0.00 0.00 5.69
6539 7470 2.602257 AAAGTTTGCTTTCTGGTGGC 57.398 45.000 0.00 0.00 40.65 5.01
6573 7514 8.993121 ACTACACATTCTCACTGAATAAAGTTG 58.007 33.333 0.00 0.00 43.00 3.16
6604 7545 8.645730 TCAGTAGTTGTCAAACGTAAAATGTA 57.354 30.769 0.00 0.00 41.45 2.29
6619 7560 9.209175 GTCAGAACTTCAAATATCAGTAGTTGT 57.791 33.333 0.00 0.00 37.23 3.32
6636 7577 1.439543 AGGCCTTCCAGTCAGAACTT 58.560 50.000 0.00 0.00 31.71 2.66
6665 7606 1.198637 GGTCATTTGTCAGTGAGCAGC 59.801 52.381 12.12 0.00 41.26 5.25
6670 7611 1.414550 TCCGTGGTCATTTGTCAGTGA 59.585 47.619 0.00 0.00 0.00 3.41
6745 7701 4.143333 TAAGCCAGGCTCGTCGGC 62.143 66.667 16.53 5.48 46.62 5.54
6746 7702 2.105128 CTAAGCCAGGCTCGTCGG 59.895 66.667 16.53 0.00 38.25 4.79
6747 7703 2.583593 GCTAAGCCAGGCTCGTCG 60.584 66.667 16.53 4.63 38.25 5.12
6748 7704 2.583593 CGCTAAGCCAGGCTCGTC 60.584 66.667 16.53 5.55 38.25 4.20
6749 7705 4.148825 CCGCTAAGCCAGGCTCGT 62.149 66.667 16.53 1.81 38.25 4.18
6841 7797 0.699399 TTCGTTGAAGGGGCCCATAA 59.301 50.000 27.72 13.75 0.00 1.90
6843 7799 1.000896 CTTCGTTGAAGGGGCCCAT 60.001 57.895 27.72 16.07 36.16 4.00
6855 7811 4.388499 ATGGGCGCCGTCTTCGTT 62.388 61.111 22.54 0.00 35.01 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.