Multiple sequence alignment - TraesCS7D01G360500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G360500 | chr7D | 100.000 | 5514 | 0 | 0 | 1 | 5514 | 463260603 | 463266116 | 0.000000e+00 | 10183 |
1 | TraesCS7D01G360500 | chr7A | 89.341 | 2533 | 145 | 37 | 4 | 2472 | 536985260 | 536982789 | 0.000000e+00 | 3066 |
2 | TraesCS7D01G360500 | chr7A | 89.618 | 2042 | 106 | 29 | 3528 | 5514 | 536981655 | 536979665 | 0.000000e+00 | 2499 |
3 | TraesCS7D01G360500 | chr7A | 95.238 | 462 | 20 | 1 | 3070 | 3529 | 536982201 | 536981740 | 0.000000e+00 | 730 |
4 | TraesCS7D01G360500 | chr7A | 93.534 | 464 | 26 | 3 | 2554 | 3016 | 536982790 | 536982330 | 0.000000e+00 | 688 |
5 | TraesCS7D01G360500 | chr7B | 88.828 | 2023 | 111 | 33 | 3528 | 5514 | 488411808 | 488409865 | 0.000000e+00 | 2377 |
6 | TraesCS7D01G360500 | chr7B | 89.417 | 1682 | 83 | 26 | 143 | 1758 | 488415315 | 488413663 | 0.000000e+00 | 2032 |
7 | TraesCS7D01G360500 | chr7B | 91.235 | 1004 | 57 | 8 | 2554 | 3529 | 488412870 | 488411870 | 0.000000e+00 | 1338 |
8 | TraesCS7D01G360500 | chr7B | 94.796 | 711 | 34 | 3 | 1764 | 2472 | 488413578 | 488412869 | 0.000000e+00 | 1105 |
9 | TraesCS7D01G360500 | chr7B | 90.625 | 160 | 14 | 1 | 3 | 162 | 488415482 | 488415324 | 1.560000e-50 | 211 |
10 | TraesCS7D01G360500 | chr3D | 93.519 | 108 | 4 | 3 | 1689 | 1793 | 315480532 | 315480425 | 2.060000e-34 | 158 |
11 | TraesCS7D01G360500 | chr3D | 90.991 | 111 | 8 | 2 | 1689 | 1798 | 73853134 | 73853243 | 1.240000e-31 | 148 |
12 | TraesCS7D01G360500 | chr3D | 96.471 | 85 | 3 | 0 | 2471 | 2555 | 602205164 | 602205248 | 2.070000e-29 | 141 |
13 | TraesCS7D01G360500 | chr3D | 90.816 | 98 | 8 | 1 | 2468 | 2565 | 437189806 | 437189902 | 4.480000e-26 | 130 |
14 | TraesCS7D01G360500 | chr6D | 93.396 | 106 | 6 | 1 | 1689 | 1793 | 221843041 | 221843146 | 7.400000e-34 | 156 |
15 | TraesCS7D01G360500 | chr6D | 94.318 | 88 | 5 | 0 | 2469 | 2556 | 325727709 | 325727796 | 9.630000e-28 | 135 |
16 | TraesCS7D01G360500 | chr6D | 90.196 | 102 | 8 | 2 | 2468 | 2569 | 39676412 | 39676511 | 1.250000e-26 | 132 |
17 | TraesCS7D01G360500 | chr6A | 93.333 | 105 | 7 | 0 | 1689 | 1793 | 184388281 | 184388177 | 7.400000e-34 | 156 |
18 | TraesCS7D01G360500 | chr6A | 93.396 | 106 | 6 | 1 | 1689 | 1793 | 263886912 | 263887017 | 7.400000e-34 | 156 |
19 | TraesCS7D01G360500 | chr6A | 94.318 | 88 | 5 | 0 | 2469 | 2556 | 464514427 | 464514514 | 9.630000e-28 | 135 |
20 | TraesCS7D01G360500 | chr2B | 93.333 | 105 | 6 | 1 | 1689 | 1793 | 251374916 | 251374813 | 2.660000e-33 | 154 |
21 | TraesCS7D01G360500 | chr2B | 95.349 | 86 | 4 | 0 | 2471 | 2556 | 14834325 | 14834410 | 2.680000e-28 | 137 |
22 | TraesCS7D01G360500 | chr2D | 91.150 | 113 | 8 | 2 | 1689 | 1801 | 195294990 | 195294880 | 9.570000e-33 | 152 |
23 | TraesCS7D01G360500 | chr4B | 96.471 | 85 | 3 | 0 | 2471 | 2555 | 656162703 | 656162619 | 2.070000e-29 | 141 |
24 | TraesCS7D01G360500 | chr5D | 96.471 | 85 | 2 | 1 | 2471 | 2555 | 122198431 | 122198514 | 7.450000e-29 | 139 |
25 | TraesCS7D01G360500 | chr4D | 93.684 | 95 | 3 | 3 | 2462 | 2555 | 504090803 | 504090711 | 7.450000e-29 | 139 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G360500 | chr7D | 463260603 | 463266116 | 5513 | False | 10183.00 | 10183 | 100.00000 | 1 | 5514 | 1 | chr7D.!!$F1 | 5513 |
1 | TraesCS7D01G360500 | chr7A | 536979665 | 536985260 | 5595 | True | 1745.75 | 3066 | 91.93275 | 4 | 5514 | 4 | chr7A.!!$R1 | 5510 |
2 | TraesCS7D01G360500 | chr7B | 488409865 | 488415482 | 5617 | True | 1412.60 | 2377 | 90.98020 | 3 | 5514 | 5 | chr7B.!!$R1 | 5511 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
789 | 826 | 0.532862 | CGTGTGCTCCAAACTCCAGT | 60.533 | 55.0 | 0.00 | 0.0 | 0.00 | 4.00 | F |
1416 | 1523 | 0.035915 | GAAGGCCACCTGGAGAAGAC | 60.036 | 60.0 | 5.01 | 0.0 | 37.39 | 3.01 | F |
1465 | 1572 | 0.617413 | AGGAAGATCTGCTGGTGGTG | 59.383 | 55.0 | 0.00 | 0.0 | 0.00 | 4.17 | F |
2098 | 2295 | 0.671251 | GGTTTCACCATTGTTCGGCA | 59.329 | 50.0 | 0.00 | 0.0 | 38.42 | 5.69 | F |
2835 | 3032 | 0.677288 | TACACCTGTGGACCGTCAAG | 59.323 | 55.0 | 0.00 | 0.0 | 34.19 | 3.02 | F |
4267 | 4662 | 0.251341 | GCCCTGAAGGTGTGGTGATT | 60.251 | 55.0 | 0.00 | 0.0 | 38.26 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2044 | 2241 | 0.033109 | TCGCCCATCCTCTCTCAAGA | 60.033 | 55.0 | 0.00 | 0.0 | 0.00 | 3.02 | R |
2848 | 3045 | 0.176680 | AGTCAGAGCATAACCAGCCG | 59.823 | 55.0 | 0.00 | 0.0 | 0.00 | 5.52 | R |
2875 | 3072 | 2.260844 | ATCCTGGACCACATATTGCG | 57.739 | 50.0 | 0.00 | 0.0 | 0.00 | 4.85 | R |
3863 | 4238 | 2.160822 | GATCACCATCCAGGATGTCG | 57.839 | 55.0 | 25.35 | 16.6 | 41.22 | 4.35 | R |
4337 | 4732 | 0.034670 | ACAGAATGCAGGAGAAGCCC | 60.035 | 55.0 | 0.00 | 0.0 | 42.53 | 5.19 | R |
5459 | 5891 | 0.037697 | GGAAAATGACCCCGTTTGGC | 60.038 | 55.0 | 0.00 | 0.0 | 32.24 | 4.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 39 | 6.601613 | TCACAGCTTTAAGTCCTGAAGAAAAA | 59.398 | 34.615 | 6.60 | 0.00 | 0.00 | 1.94 |
50 | 51 | 8.143835 | AGTCCTGAAGAAAAATGGTAAAATGTG | 58.856 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
57 | 58 | 8.472007 | AGAAAAATGGTAAAATGTGGTCAGTA | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
72 | 73 | 6.661805 | TGTGGTCAGTAGATACACAACAGATA | 59.338 | 38.462 | 0.00 | 0.00 | 39.74 | 1.98 |
91 | 92 | 2.279582 | ACTGATTCCGTTCACGCTAG | 57.720 | 50.000 | 0.00 | 0.00 | 38.18 | 3.42 |
195 | 226 | 6.034256 | GTCAATTTACATTCAGAACAGCATGC | 59.966 | 38.462 | 10.51 | 10.51 | 42.53 | 4.06 |
329 | 360 | 4.136051 | TGAGAATCACAAGTCACAATGCA | 58.864 | 39.130 | 0.00 | 0.00 | 42.56 | 3.96 |
749 | 786 | 2.939460 | ATTTTACATTCAGCCACCGC | 57.061 | 45.000 | 0.00 | 0.00 | 0.00 | 5.68 |
789 | 826 | 0.532862 | CGTGTGCTCCAAACTCCAGT | 60.533 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
826 | 876 | 4.297299 | AGCGATGCAAATATCCAACTTG | 57.703 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
851 | 901 | 3.931578 | AGCACTCTCTCGCAAAAAGTAT | 58.068 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
1011 | 1106 | 2.491022 | CCTCGGGATGTCCTCGTCC | 61.491 | 68.421 | 0.00 | 0.00 | 46.10 | 4.79 |
1145 | 1251 | 1.066587 | GGAGATGCTCCTCCGTTCG | 59.933 | 63.158 | 6.23 | 0.00 | 46.41 | 3.95 |
1147 | 1253 | 2.586357 | GATGCTCCTCCGTTCGCC | 60.586 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1148 | 1254 | 4.162690 | ATGCTCCTCCGTTCGCCC | 62.163 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1173 | 1280 | 0.756903 | CCCCGATCACCCGTTAATCT | 59.243 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1175 | 1282 | 1.217882 | CCGATCACCCGTTAATCTGC | 58.782 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1239 | 1346 | 2.771639 | CGACATCGCCTTCCTCGGA | 61.772 | 63.158 | 0.00 | 0.00 | 0.00 | 4.55 |
1282 | 1389 | 1.977293 | GCTTCCCGCCTCTTCTCCAT | 61.977 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1284 | 1391 | 0.617535 | TTCCCGCCTCTTCTCCATCA | 60.618 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1315 | 1422 | 1.103803 | ACATAGACGTGCATCGGACT | 58.896 | 50.000 | 12.18 | 12.11 | 44.69 | 3.85 |
1316 | 1423 | 1.202302 | ACATAGACGTGCATCGGACTG | 60.202 | 52.381 | 12.18 | 7.19 | 44.69 | 3.51 |
1319 | 1426 | 1.080772 | GACGTGCATCGGACTGTGA | 60.081 | 57.895 | 12.18 | 0.00 | 44.69 | 3.58 |
1342 | 1449 | 2.432456 | GCGCGTCCTGTGATGTGA | 60.432 | 61.111 | 8.43 | 0.00 | 39.84 | 3.58 |
1416 | 1523 | 0.035915 | GAAGGCCACCTGGAGAAGAC | 60.036 | 60.000 | 5.01 | 0.00 | 37.39 | 3.01 |
1417 | 1524 | 1.831652 | AAGGCCACCTGGAGAAGACG | 61.832 | 60.000 | 5.01 | 0.00 | 37.39 | 4.18 |
1420 | 1527 | 2.125912 | CACCTGGAGAAGACGCGG | 60.126 | 66.667 | 12.47 | 0.00 | 0.00 | 6.46 |
1465 | 1572 | 0.617413 | AGGAAGATCTGCTGGTGGTG | 59.383 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1495 | 1602 | 8.553459 | ACAATCTGTTTTCACTAGGTTCATAG | 57.447 | 34.615 | 0.00 | 0.00 | 0.00 | 2.23 |
1526 | 1633 | 8.839310 | TTTTGTTCCTTTTGATTTTTGTCTCA | 57.161 | 26.923 | 0.00 | 0.00 | 0.00 | 3.27 |
1527 | 1634 | 9.447157 | TTTTGTTCCTTTTGATTTTTGTCTCAT | 57.553 | 25.926 | 0.00 | 0.00 | 0.00 | 2.90 |
1528 | 1635 | 8.647143 | TTGTTCCTTTTGATTTTTGTCTCATC | 57.353 | 30.769 | 0.00 | 0.00 | 0.00 | 2.92 |
1529 | 1636 | 7.209475 | TGTTCCTTTTGATTTTTGTCTCATCC | 58.791 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
1530 | 1637 | 6.345096 | TCCTTTTGATTTTTGTCTCATCCC | 57.655 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
1531 | 1638 | 5.245977 | TCCTTTTGATTTTTGTCTCATCCCC | 59.754 | 40.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1532 | 1639 | 5.246883 | CCTTTTGATTTTTGTCTCATCCCCT | 59.753 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1539 | 1646 | 7.728083 | TGATTTTTGTCTCATCCCCTTTTAAGA | 59.272 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
1579 | 1686 | 2.738521 | CAGGTTCACACGGAGGCG | 60.739 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
1596 | 1703 | 1.071605 | GCGTACTTGAACAGCCTCAG | 58.928 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1632 | 1739 | 1.905894 | TGCAGCCATTGTAGAGGTACA | 59.094 | 47.619 | 0.00 | 0.00 | 37.38 | 2.90 |
1659 | 1766 | 3.500343 | CTCAGGGGAAGTTGAATTGGTT | 58.500 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1662 | 1769 | 1.970640 | GGGGAAGTTGAATTGGTTGCT | 59.029 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
1680 | 1795 | 3.114606 | TGCTTGATTGATACTCCCTCCA | 58.885 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1805 | 2000 | 4.022589 | CGGAGGGAGTAGCAAATTACGATA | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
1974 | 2169 | 1.485895 | GGTGCATAATTTGGGTGCCAT | 59.514 | 47.619 | 0.00 | 0.00 | 38.06 | 4.40 |
1997 | 2192 | 2.704572 | CCAGGGAAACTCTGTAAGCTG | 58.295 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
2044 | 2241 | 6.127619 | GGTCCATTTTATCAGCTAAACTTGCT | 60.128 | 38.462 | 0.00 | 0.00 | 42.06 | 3.91 |
2098 | 2295 | 0.671251 | GGTTTCACCATTGTTCGGCA | 59.329 | 50.000 | 0.00 | 0.00 | 38.42 | 5.69 |
2125 | 2322 | 2.519691 | AGGGGGAGGATTTTGTGCATAT | 59.480 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
2142 | 2339 | 4.628766 | TGCATATGCTGATATTTCGCTCTC | 59.371 | 41.667 | 27.13 | 0.00 | 42.66 | 3.20 |
2197 | 2394 | 3.689872 | AGGTGAGAAGCCTATACTGGA | 57.310 | 47.619 | 0.00 | 0.00 | 33.97 | 3.86 |
2275 | 2472 | 4.034048 | GCTTATACAACGTATGTGCTTGCT | 59.966 | 41.667 | 11.90 | 0.00 | 43.77 | 3.91 |
2327 | 2524 | 5.738619 | TCTGTGTTGTTAAGCATCCTCTA | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
2358 | 2555 | 5.574970 | ATCTTGCTTTATTCCCTAGGGAG | 57.425 | 43.478 | 29.40 | 18.87 | 46.06 | 4.30 |
2359 | 2556 | 4.631234 | TCTTGCTTTATTCCCTAGGGAGA | 58.369 | 43.478 | 29.40 | 20.41 | 46.06 | 3.71 |
2364 | 2561 | 4.446311 | GCTTTATTCCCTAGGGAGATTGCA | 60.446 | 45.833 | 29.40 | 15.18 | 46.06 | 4.08 |
2374 | 2571 | 2.901839 | AGGGAGATTGCAATGCTTGTTT | 59.098 | 40.909 | 18.59 | 0.00 | 0.00 | 2.83 |
2460 | 2657 | 4.487948 | CAAGGATGCAAACCAATGTGTAG | 58.512 | 43.478 | 14.25 | 0.00 | 0.00 | 2.74 |
2470 | 2667 | 6.570378 | GCAAACCAATGTGTAGATTGCTTACT | 60.570 | 38.462 | 0.00 | 0.00 | 38.79 | 2.24 |
2471 | 2668 | 7.361713 | GCAAACCAATGTGTAGATTGCTTACTA | 60.362 | 37.037 | 0.00 | 0.00 | 38.79 | 1.82 |
2472 | 2669 | 7.611213 | AACCAATGTGTAGATTGCTTACTAC | 57.389 | 36.000 | 0.00 | 0.00 | 39.27 | 2.73 |
2473 | 2670 | 6.947464 | ACCAATGTGTAGATTGCTTACTACT | 58.053 | 36.000 | 0.00 | 0.00 | 39.46 | 2.57 |
2474 | 2671 | 7.042335 | ACCAATGTGTAGATTGCTTACTACTC | 58.958 | 38.462 | 0.00 | 0.00 | 39.46 | 2.59 |
2475 | 2672 | 6.480320 | CCAATGTGTAGATTGCTTACTACTCC | 59.520 | 42.308 | 0.00 | 0.00 | 39.46 | 3.85 |
2476 | 2673 | 5.593679 | TGTGTAGATTGCTTACTACTCCC | 57.406 | 43.478 | 0.00 | 0.00 | 39.46 | 4.30 |
2477 | 2674 | 5.269991 | TGTGTAGATTGCTTACTACTCCCT | 58.730 | 41.667 | 0.00 | 0.00 | 39.46 | 4.20 |
2478 | 2675 | 5.360144 | TGTGTAGATTGCTTACTACTCCCTC | 59.640 | 44.000 | 0.00 | 0.00 | 39.46 | 4.30 |
2479 | 2676 | 4.894114 | TGTAGATTGCTTACTACTCCCTCC | 59.106 | 45.833 | 0.00 | 0.00 | 39.46 | 4.30 |
2480 | 2677 | 2.959707 | AGATTGCTTACTACTCCCTCCG | 59.040 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2481 | 2678 | 2.226962 | TTGCTTACTACTCCCTCCGT | 57.773 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2482 | 2679 | 1.760192 | TGCTTACTACTCCCTCCGTC | 58.240 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2483 | 2680 | 1.031235 | GCTTACTACTCCCTCCGTCC | 58.969 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2484 | 2681 | 1.689984 | CTTACTACTCCCTCCGTCCC | 58.310 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2485 | 2682 | 1.002069 | TTACTACTCCCTCCGTCCCA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2486 | 2683 | 1.229131 | TACTACTCCCTCCGTCCCAT | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2487 | 2684 | 1.229131 | ACTACTCCCTCCGTCCCATA | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2488 | 2685 | 1.572415 | ACTACTCCCTCCGTCCCATAA | 59.428 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
2489 | 2686 | 2.179424 | ACTACTCCCTCCGTCCCATAAT | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2490 | 2687 | 3.400322 | ACTACTCCCTCCGTCCCATAATA | 59.600 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
2491 | 2688 | 3.562108 | ACTCCCTCCGTCCCATAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
2492 | 2689 | 4.687262 | ACTCCCTCCGTCCCATAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
2493 | 2690 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
2494 | 2691 | 5.024118 | ACTCCCTCCGTCCCATAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
2495 | 2692 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2496 | 2693 | 5.850278 | TCCCTCCGTCCCATAATATAAGAT | 58.150 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
2497 | 2694 | 5.897824 | TCCCTCCGTCCCATAATATAAGATC | 59.102 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2498 | 2695 | 5.221263 | CCCTCCGTCCCATAATATAAGATCG | 60.221 | 48.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2499 | 2696 | 5.360144 | CCTCCGTCCCATAATATAAGATCGT | 59.640 | 44.000 | 0.00 | 0.00 | 0.00 | 3.73 |
2500 | 2697 | 6.127423 | CCTCCGTCCCATAATATAAGATCGTT | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
2501 | 2698 | 7.235935 | TCCGTCCCATAATATAAGATCGTTT | 57.764 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
2502 | 2699 | 7.673180 | TCCGTCCCATAATATAAGATCGTTTT | 58.327 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2503 | 2700 | 7.601130 | TCCGTCCCATAATATAAGATCGTTTTG | 59.399 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
2504 | 2701 | 7.234384 | CGTCCCATAATATAAGATCGTTTTGC | 58.766 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
2505 | 2702 | 7.234384 | GTCCCATAATATAAGATCGTTTTGCG | 58.766 | 38.462 | 0.00 | 0.00 | 43.01 | 4.85 |
2516 | 2713 | 3.247563 | TCGTTTTGCGAGCTAAAACAG | 57.752 | 42.857 | 18.63 | 12.95 | 45.68 | 3.16 |
2517 | 2714 | 2.601266 | TCGTTTTGCGAGCTAAAACAGC | 60.601 | 45.455 | 18.63 | 5.74 | 45.68 | 4.40 |
2534 | 2731 | 9.846248 | CTAAAACAGCTTGCAAAACTATCTTAT | 57.154 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
2542 | 2739 | 9.846248 | GCTTGCAAAACTATCTTATATTATGGG | 57.154 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
2545 | 2742 | 9.214957 | TGCAAAACTATCTTATATTATGGGACG | 57.785 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
2546 | 2743 | 8.665685 | GCAAAACTATCTTATATTATGGGACGG | 58.334 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
2547 | 2744 | 9.938280 | CAAAACTATCTTATATTATGGGACGGA | 57.062 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
2549 | 2746 | 7.899648 | ACTATCTTATATTATGGGACGGAGG | 57.100 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2550 | 2747 | 6.839657 | ACTATCTTATATTATGGGACGGAGGG | 59.160 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2551 | 2748 | 5.279562 | TCTTATATTATGGGACGGAGGGA | 57.720 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2552 | 2749 | 5.269991 | TCTTATATTATGGGACGGAGGGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2673 | 2870 | 6.491403 | AGGATTTTGCTAATGATGGTATGTCC | 59.509 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
2705 | 2902 | 7.159437 | TGTTCTTGTATGCATTTTGTTTTCG | 57.841 | 32.000 | 3.54 | 0.00 | 0.00 | 3.46 |
2706 | 2903 | 6.754209 | TGTTCTTGTATGCATTTTGTTTTCGT | 59.246 | 30.769 | 3.54 | 0.00 | 0.00 | 3.85 |
2828 | 3025 | 5.063880 | AGAATTCTTGTTACACCTGTGGAC | 58.936 | 41.667 | 0.88 | 1.25 | 34.19 | 4.02 |
2835 | 3032 | 0.677288 | TACACCTGTGGACCGTCAAG | 59.323 | 55.000 | 0.00 | 0.00 | 34.19 | 3.02 |
2875 | 3072 | 4.404715 | TGGTTATGCTCTGACTACCCTTAC | 59.595 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
2888 | 3085 | 2.914059 | ACCCTTACGCAATATGTGGTC | 58.086 | 47.619 | 0.00 | 0.00 | 30.87 | 4.02 |
2889 | 3086 | 2.218603 | CCCTTACGCAATATGTGGTCC | 58.781 | 52.381 | 0.00 | 0.00 | 30.87 | 4.46 |
2921 | 3118 | 8.934697 | TGCTTATGGTGTAGAGGTTATTTATCT | 58.065 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2969 | 3168 | 6.430000 | TGTTGAGCATAAGTTTTCTTCCCTAC | 59.570 | 38.462 | 0.00 | 0.00 | 40.91 | 3.18 |
2973 | 3172 | 4.533815 | CATAAGTTTTCTTCCCTACCCCC | 58.466 | 47.826 | 0.00 | 0.00 | 40.91 | 5.40 |
2980 | 3179 | 3.519370 | TCTTCCCTACCCCCTAAATGT | 57.481 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
2981 | 3180 | 3.120108 | TCTTCCCTACCCCCTAAATGTG | 58.880 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2991 | 3191 | 6.645884 | ACCCCCTAAATGTGTTTCTACATA | 57.354 | 37.500 | 0.00 | 0.00 | 40.24 | 2.29 |
3017 | 3217 | 9.520515 | AATGTTTTTGAAGATACCATACAGTCT | 57.479 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
3040 | 3297 | 7.175641 | GTCTAGATGGTGCAAATAGGCATTTAT | 59.824 | 37.037 | 0.00 | 0.00 | 46.92 | 1.40 |
3043 | 3300 | 5.929058 | TGGTGCAAATAGGCATTTATCAA | 57.071 | 34.783 | 0.00 | 0.00 | 46.92 | 2.57 |
3088 | 3366 | 7.387122 | CACAGCTGTGTTGCTATGATATCTATT | 59.613 | 37.037 | 34.04 | 0.00 | 39.61 | 1.73 |
3116 | 3394 | 4.859798 | CCACTGTTCGAAGATTAGTCTGTC | 59.140 | 45.833 | 0.00 | 0.00 | 35.04 | 3.51 |
3125 | 3403 | 7.310664 | TCGAAGATTAGTCTGTCGTTATTGTT | 58.689 | 34.615 | 14.55 | 0.00 | 36.86 | 2.83 |
3280 | 3559 | 6.342338 | AGTCGAGTTAGTTGTAAGTTGGAT | 57.658 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
3338 | 3617 | 7.458409 | AATTCAAATATGAGTTGAGTGCACT | 57.542 | 32.000 | 21.88 | 21.88 | 34.57 | 4.40 |
3399 | 3678 | 1.339438 | TGGATCAGCTTGACAAGGCTC | 60.339 | 52.381 | 16.80 | 2.59 | 36.59 | 4.70 |
3412 | 3691 | 2.711547 | ACAAGGCTCTGAAGGTACCTTT | 59.288 | 45.455 | 27.72 | 12.12 | 38.67 | 3.11 |
3430 | 3711 | 6.903340 | ACCTTTACACTTATAGATGGGGTT | 57.097 | 37.500 | 0.00 | 0.00 | 0.00 | 4.11 |
3436 | 3717 | 3.069586 | CACTTATAGATGGGGTTCTCGCA | 59.930 | 47.826 | 0.00 | 0.00 | 42.62 | 5.10 |
3482 | 3763 | 3.273434 | TGTCCTATGCACTGCAATTCTC | 58.727 | 45.455 | 8.03 | 0.39 | 43.62 | 2.87 |
3488 | 3769 | 1.093159 | GCACTGCAATTCTCAGGGAG | 58.907 | 55.000 | 9.94 | 0.00 | 37.13 | 4.30 |
3510 | 3791 | 7.255277 | GGGAGAAATAGGTGAAAGATGTTATGC | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 3.14 |
3525 | 3806 | 8.553085 | AGATGTTATGCTAGGTGCCATATATA | 57.447 | 34.615 | 0.00 | 0.00 | 42.00 | 0.86 |
3579 | 3947 | 6.620877 | ATGTAAACTGGACATAGAGGTGAA | 57.379 | 37.500 | 0.00 | 0.00 | 35.75 | 3.18 |
3585 | 3953 | 8.567285 | AAACTGGACATAGAGGTGAATTTTAG | 57.433 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
3673 | 4041 | 6.154363 | TGTTCAACTGAAAAGGAGGTTTGAAT | 59.846 | 34.615 | 0.00 | 0.00 | 35.58 | 2.57 |
3674 | 4042 | 6.147864 | TCAACTGAAAAGGAGGTTTGAATG | 57.852 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
3731 | 4100 | 4.441495 | GCAATTGGCACTATCCCTTTAACC | 60.441 | 45.833 | 7.72 | 0.00 | 43.97 | 2.85 |
3802 | 4177 | 4.938575 | TTAGAGTTCCTTTTGGGGCATA | 57.061 | 40.909 | 0.00 | 0.00 | 40.87 | 3.14 |
3863 | 4238 | 8.462016 | CAGCTTATTATTTATAATGCTGGGACC | 58.538 | 37.037 | 18.16 | 0.00 | 41.32 | 4.46 |
3903 | 4278 | 2.896685 | CCATTGGGCAACTTGAAGGTAA | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
4182 | 4576 | 4.727507 | TGCCTTTGTTTTGCTTCTGTTA | 57.272 | 36.364 | 0.00 | 0.00 | 0.00 | 2.41 |
4233 | 4628 | 1.280133 | TGCTACTGCATGCTTTCTCCT | 59.720 | 47.619 | 20.33 | 0.00 | 45.31 | 3.69 |
4267 | 4662 | 0.251341 | GCCCTGAAGGTGTGGTGATT | 60.251 | 55.000 | 0.00 | 0.00 | 38.26 | 2.57 |
4378 | 4773 | 1.604604 | TTTTTGTTCCTCTCCTGCGG | 58.395 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
4481 | 4878 | 5.652452 | TCGATTACCAATCTCTCACAGAAGA | 59.348 | 40.000 | 0.00 | 0.00 | 35.73 | 2.87 |
4487 | 4884 | 4.694509 | CCAATCTCTCACAGAAGAACTTGG | 59.305 | 45.833 | 0.00 | 0.00 | 33.62 | 3.61 |
4492 | 4889 | 6.042093 | ATCTCTCACAGAAGAACTTGGTACAA | 59.958 | 38.462 | 0.00 | 0.00 | 38.08 | 2.41 |
4540 | 4937 | 2.433446 | CTCTGCCACCCACAAGCT | 59.567 | 61.111 | 0.00 | 0.00 | 0.00 | 3.74 |
4650 | 5056 | 7.448748 | AAAATCTTGTCACCTTGTACATACC | 57.551 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4678 | 5084 | 3.225940 | AGGCCTTTGTTTCCAAGAAGAG | 58.774 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
4679 | 5085 | 2.288457 | GGCCTTTGTTTCCAAGAAGAGC | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
4681 | 5087 | 3.551659 | GCCTTTGTTTCCAAGAAGAGCAG | 60.552 | 47.826 | 0.00 | 0.00 | 0.00 | 4.24 |
4763 | 5173 | 6.340962 | TCCCCATCGTCAAACTATACTATG | 57.659 | 41.667 | 0.00 | 0.00 | 0.00 | 2.23 |
4769 | 5179 | 9.823098 | CCATCGTCAAACTATACTATGTACTAC | 57.177 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
4849 | 5264 | 7.885399 | AGTTTGCACTATAGATCTTGAAGGTTT | 59.115 | 33.333 | 6.78 | 0.00 | 0.00 | 3.27 |
4872 | 5290 | 9.875675 | GTTTTCAAGAGATATAGCATGATGTTC | 57.124 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
4939 | 5358 | 0.515564 | CGTCGGTTTGTTGGATGGTC | 59.484 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4949 | 5368 | 7.107542 | GGTTTGTTGGATGGTCTACAGTTATA | 58.892 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
4950 | 5369 | 7.280205 | GGTTTGTTGGATGGTCTACAGTTATAG | 59.720 | 40.741 | 0.00 | 0.00 | 0.00 | 1.31 |
4996 | 5415 | 2.942641 | GAACTTTGGTTCCTCCCCG | 58.057 | 57.895 | 0.00 | 0.00 | 44.24 | 5.73 |
5125 | 5544 | 0.179062 | ACCGAGCTTCATCATCCAGC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5129 | 5548 | 0.755079 | AGCTTCATCATCCAGCGCTA | 59.245 | 50.000 | 10.99 | 0.00 | 38.66 | 4.26 |
5162 | 5581 | 4.835056 | GCCAGGCTATTCCTTTCCAATAAT | 59.165 | 41.667 | 3.29 | 0.00 | 44.75 | 1.28 |
5163 | 5582 | 6.010219 | GCCAGGCTATTCCTTTCCAATAATA | 58.990 | 40.000 | 3.29 | 0.00 | 44.75 | 0.98 |
5164 | 5583 | 6.493458 | GCCAGGCTATTCCTTTCCAATAATAA | 59.507 | 38.462 | 3.29 | 0.00 | 44.75 | 1.40 |
5165 | 5584 | 7.523873 | GCCAGGCTATTCCTTTCCAATAATAAC | 60.524 | 40.741 | 3.29 | 0.00 | 44.75 | 1.89 |
5197 | 5616 | 1.957877 | CCTAGAGCCCTAGACCTTTCG | 59.042 | 57.143 | 3.42 | 0.00 | 44.00 | 3.46 |
5198 | 5617 | 1.338655 | CTAGAGCCCTAGACCTTTCGC | 59.661 | 57.143 | 0.00 | 0.00 | 44.00 | 4.70 |
5199 | 5618 | 1.144276 | GAGCCCTAGACCTTTCGCC | 59.856 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
5212 | 5631 | 1.457303 | CTTTCGCCGCTCATATACTGC | 59.543 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
5266 | 5687 | 6.918892 | AAAAAGGAAAATTCAGAAAACCGG | 57.081 | 33.333 | 0.00 | 0.00 | 0.00 | 5.28 |
5272 | 5693 | 5.989168 | GGAAAATTCAGAAAACCGGTTCATT | 59.011 | 36.000 | 22.53 | 12.63 | 0.00 | 2.57 |
5391 | 5821 | 4.612264 | TCTAGACCCAACACTACCAAAC | 57.388 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
5400 | 5830 | 4.202010 | CCAACACTACCAAACCTCAACAAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
5408 | 5838 | 4.173256 | CCAAACCTCAACAAGACAACAAC | 58.827 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
5432 | 5862 | 7.429633 | ACATACATGGATAAAAGACGAGAGAG | 58.570 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
5511 | 5943 | 1.070786 | GCTCCCTGACACGGTCAAA | 59.929 | 57.895 | 7.90 | 0.00 | 42.26 | 2.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 39 | 7.769044 | GTGTATCTACTGACCACATTTTACCAT | 59.231 | 37.037 | 0.00 | 0.00 | 31.53 | 3.55 |
50 | 51 | 7.067129 | TCAGTATCTGTTGTGTATCTACTGACC | 59.933 | 40.741 | 5.63 | 0.00 | 38.89 | 4.02 |
57 | 58 | 6.096987 | ACGGAATCAGTATCTGTTGTGTATCT | 59.903 | 38.462 | 0.00 | 0.00 | 32.52 | 1.98 |
72 | 73 | 1.816835 | TCTAGCGTGAACGGAATCAGT | 59.183 | 47.619 | 4.84 | 0.00 | 40.23 | 3.41 |
91 | 92 | 8.388484 | ACCACATAAGATTATTCATGCTTCTC | 57.612 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
97 | 98 | 8.671921 | GCAGGATACCACATAAGATTATTCATG | 58.328 | 37.037 | 0.00 | 0.00 | 37.17 | 3.07 |
195 | 226 | 8.075574 | TGTTATCAGTGCTTTGTAAAGATTGTG | 58.924 | 33.333 | 8.47 | 0.71 | 38.28 | 3.33 |
329 | 360 | 4.591924 | TCCTCCTCTTAGTTTCGGTTTCTT | 59.408 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
508 | 539 | 1.137675 | CCTGCTGACGATCCAATCTGA | 59.862 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
693 | 727 | 1.439644 | GGAATTCGCTCTCGCTCCT | 59.560 | 57.895 | 0.00 | 0.00 | 35.26 | 3.69 |
694 | 728 | 1.592939 | GGGAATTCGCTCTCGCTCC | 60.593 | 63.158 | 14.84 | 0.00 | 35.26 | 4.70 |
728 | 765 | 3.691498 | GCGGTGGCTGAATGTAAAATAC | 58.309 | 45.455 | 0.00 | 0.00 | 35.83 | 1.89 |
749 | 786 | 4.266976 | ACGAATACAATTTACGCGGAAGAG | 59.733 | 41.667 | 12.47 | 4.36 | 0.00 | 2.85 |
789 | 826 | 0.759436 | CGCTAGCCCTCCTTCCCTTA | 60.759 | 60.000 | 9.66 | 0.00 | 0.00 | 2.69 |
990 | 1067 | 3.551407 | GAGGACATCCCGAGGGCC | 61.551 | 72.222 | 2.58 | 0.00 | 41.55 | 5.80 |
1145 | 1251 | 3.556306 | TGATCGGGGATTCGGGGC | 61.556 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
1147 | 1253 | 2.426023 | GGTGATCGGGGATTCGGG | 59.574 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
1148 | 1254 | 2.426023 | GGGTGATCGGGGATTCGG | 59.574 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1149 | 1255 | 2.029073 | CGGGTGATCGGGGATTCG | 59.971 | 66.667 | 0.00 | 0.00 | 0.00 | 3.34 |
1150 | 1256 | 0.754472 | TAACGGGTGATCGGGGATTC | 59.246 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1151 | 1257 | 1.205966 | TTAACGGGTGATCGGGGATT | 58.794 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1152 | 1258 | 1.346722 | GATTAACGGGTGATCGGGGAT | 59.653 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1153 | 1259 | 0.754472 | GATTAACGGGTGATCGGGGA | 59.246 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1239 | 1346 | 2.168106 | AGCAGCTCACATCTTCTCGATT | 59.832 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
1282 | 1389 | 3.741075 | CGTCTATGTGGCTAGGCAAATGA | 60.741 | 47.826 | 27.81 | 20.05 | 0.00 | 2.57 |
1284 | 1391 | 2.170607 | ACGTCTATGTGGCTAGGCAAAT | 59.829 | 45.455 | 24.10 | 24.10 | 0.00 | 2.32 |
1315 | 1422 | 2.429571 | GGACGCGCGTAAGTCACA | 60.430 | 61.111 | 37.91 | 0.00 | 39.01 | 3.58 |
1316 | 1423 | 2.126580 | AGGACGCGCGTAAGTCAC | 60.127 | 61.111 | 37.91 | 22.01 | 39.01 | 3.67 |
1319 | 1426 | 2.209064 | ATCACAGGACGCGCGTAAGT | 62.209 | 55.000 | 37.91 | 29.17 | 41.68 | 2.24 |
1342 | 1449 | 0.112412 | AGGAATCAAACGGGTGCCTT | 59.888 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1446 | 1553 | 0.617413 | CACCACCAGCAGATCTTCCT | 59.383 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1501 | 1608 | 8.839310 | TGAGACAAAAATCAAAAGGAACAAAA | 57.161 | 26.923 | 0.00 | 0.00 | 0.00 | 2.44 |
1502 | 1609 | 9.097257 | GATGAGACAAAAATCAAAAGGAACAAA | 57.903 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
1504 | 1611 | 7.209475 | GGATGAGACAAAAATCAAAAGGAACA | 58.791 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1505 | 1612 | 6.646653 | GGGATGAGACAAAAATCAAAAGGAAC | 59.353 | 38.462 | 0.00 | 0.00 | 0.00 | 3.62 |
1506 | 1613 | 6.239572 | GGGGATGAGACAAAAATCAAAAGGAA | 60.240 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
1507 | 1614 | 5.245977 | GGGGATGAGACAAAAATCAAAAGGA | 59.754 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1508 | 1615 | 5.246883 | AGGGGATGAGACAAAAATCAAAAGG | 59.753 | 40.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1509 | 1616 | 6.350629 | AGGGGATGAGACAAAAATCAAAAG | 57.649 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
1510 | 1617 | 6.745794 | AAGGGGATGAGACAAAAATCAAAA | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
1511 | 1618 | 6.745794 | AAAGGGGATGAGACAAAAATCAAA | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1512 | 1619 | 6.745794 | AAAAGGGGATGAGACAAAAATCAA | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1513 | 1620 | 7.728083 | TCTTAAAAGGGGATGAGACAAAAATCA | 59.272 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1514 | 1621 | 8.122472 | TCTTAAAAGGGGATGAGACAAAAATC | 57.878 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
1515 | 1622 | 8.670521 | ATCTTAAAAGGGGATGAGACAAAAAT | 57.329 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1516 | 1623 | 8.367156 | CAATCTTAAAAGGGGATGAGACAAAAA | 58.633 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
1517 | 1624 | 7.508977 | ACAATCTTAAAAGGGGATGAGACAAAA | 59.491 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
1518 | 1625 | 7.010160 | ACAATCTTAAAAGGGGATGAGACAAA | 58.990 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
1519 | 1626 | 6.552008 | ACAATCTTAAAAGGGGATGAGACAA | 58.448 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1520 | 1627 | 6.139679 | ACAATCTTAAAAGGGGATGAGACA | 57.860 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1521 | 1628 | 6.095580 | GGAACAATCTTAAAAGGGGATGAGAC | 59.904 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
1522 | 1629 | 6.187682 | GGAACAATCTTAAAAGGGGATGAGA | 58.812 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1523 | 1630 | 5.951747 | TGGAACAATCTTAAAAGGGGATGAG | 59.048 | 40.000 | 0.00 | 0.00 | 31.92 | 2.90 |
1524 | 1631 | 5.898120 | TGGAACAATCTTAAAAGGGGATGA | 58.102 | 37.500 | 0.00 | 0.00 | 31.92 | 2.92 |
1579 | 1686 | 2.933056 | GCTCCTGAGGCTGTTCAAGTAC | 60.933 | 54.545 | 0.00 | 0.00 | 0.00 | 2.73 |
1596 | 1703 | 2.338785 | GCAACCCTGAAGCTGCTCC | 61.339 | 63.158 | 1.00 | 0.00 | 0.00 | 4.70 |
1632 | 1739 | 1.494721 | TCAACTTCCCCTGAGCAACTT | 59.505 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
1637 | 1744 | 1.821136 | CCAATTCAACTTCCCCTGAGC | 59.179 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
1659 | 1766 | 3.114606 | TGGAGGGAGTATCAATCAAGCA | 58.885 | 45.455 | 0.00 | 0.00 | 36.25 | 3.91 |
1662 | 1769 | 5.191522 | TGTGAATGGAGGGAGTATCAATCAA | 59.808 | 40.000 | 0.00 | 0.00 | 36.25 | 2.57 |
1680 | 1795 | 7.387119 | TCAGTACGTATGTAGTCTTGTGAAT | 57.613 | 36.000 | 0.00 | 0.00 | 31.76 | 2.57 |
1762 | 1878 | 8.721478 | CCCTCCGTTCATAAATATAAGATGTTG | 58.279 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
1974 | 2169 | 2.814097 | GCTTACAGAGTTTCCCTGGCAA | 60.814 | 50.000 | 0.00 | 0.00 | 36.03 | 4.52 |
2044 | 2241 | 0.033109 | TCGCCCATCCTCTCTCAAGA | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2098 | 2295 | 1.925959 | CAAAATCCTCCCCCTTCCTCT | 59.074 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
2125 | 2322 | 3.758755 | ATGGAGAGCGAAATATCAGCA | 57.241 | 42.857 | 0.00 | 0.00 | 0.00 | 4.41 |
2142 | 2339 | 2.393764 | GGACAAACGCAAACTGAATGG | 58.606 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2197 | 2394 | 8.135382 | ACATAGTTTCTACAGTTACAGTCCAT | 57.865 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2275 | 2472 | 7.269316 | TGACAGAATATATTTACAGCCGTCAA | 58.731 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2314 | 2511 | 4.980339 | TGGCATGATAGAGGATGCTTAA | 57.020 | 40.909 | 0.00 | 0.00 | 43.77 | 1.85 |
2327 | 2524 | 5.221581 | GGGAATAAAGCAAGATTGGCATGAT | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2374 | 2571 | 2.775911 | AGAGTGCTTGCTAAGATGCA | 57.224 | 45.000 | 0.00 | 0.00 | 41.65 | 3.96 |
2391 | 2588 | 3.181465 | GGTAACTAGCCAAGCAGCATAGA | 60.181 | 47.826 | 0.00 | 0.00 | 34.23 | 1.98 |
2460 | 2657 | 2.694109 | ACGGAGGGAGTAGTAAGCAATC | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2470 | 2667 | 4.687262 | ATATTATGGGACGGAGGGAGTA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2471 | 2668 | 3.562108 | ATATTATGGGACGGAGGGAGT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2472 | 2669 | 5.269991 | TCTTATATTATGGGACGGAGGGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2473 | 2670 | 5.279562 | TCTTATATTATGGGACGGAGGGA | 57.720 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2474 | 2671 | 5.221263 | CGATCTTATATTATGGGACGGAGGG | 60.221 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2475 | 2672 | 5.360144 | ACGATCTTATATTATGGGACGGAGG | 59.640 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2476 | 2673 | 6.452494 | ACGATCTTATATTATGGGACGGAG | 57.548 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
2477 | 2674 | 6.845758 | AACGATCTTATATTATGGGACGGA | 57.154 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
2478 | 2675 | 7.623506 | GCAAAACGATCTTATATTATGGGACGG | 60.624 | 40.741 | 0.00 | 0.00 | 0.00 | 4.79 |
2479 | 2676 | 7.234384 | GCAAAACGATCTTATATTATGGGACG | 58.766 | 38.462 | 0.00 | 0.00 | 0.00 | 4.79 |
2508 | 2705 | 9.846248 | ATAAGATAGTTTTGCAAGCTGTTTTAG | 57.154 | 29.630 | 13.66 | 0.00 | 0.00 | 1.85 |
2516 | 2713 | 9.846248 | CCCATAATATAAGATAGTTTTGCAAGC | 57.154 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
2519 | 2716 | 9.214957 | CGTCCCATAATATAAGATAGTTTTGCA | 57.785 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
2520 | 2717 | 8.665685 | CCGTCCCATAATATAAGATAGTTTTGC | 58.334 | 37.037 | 0.00 | 0.00 | 0.00 | 3.68 |
2521 | 2718 | 9.938280 | TCCGTCCCATAATATAAGATAGTTTTG | 57.062 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2523 | 2720 | 8.759782 | CCTCCGTCCCATAATATAAGATAGTTT | 58.240 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
2524 | 2721 | 7.344871 | CCCTCCGTCCCATAATATAAGATAGTT | 59.655 | 40.741 | 0.00 | 0.00 | 0.00 | 2.24 |
2525 | 2722 | 6.839657 | CCCTCCGTCCCATAATATAAGATAGT | 59.160 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
2526 | 2723 | 7.067421 | TCCCTCCGTCCCATAATATAAGATAG | 58.933 | 42.308 | 0.00 | 0.00 | 0.00 | 2.08 |
2527 | 2724 | 6.988725 | TCCCTCCGTCCCATAATATAAGATA | 58.011 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2528 | 2725 | 5.850278 | TCCCTCCGTCCCATAATATAAGAT | 58.150 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
2529 | 2726 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2530 | 2727 | 5.024118 | ACTCCCTCCGTCCCATAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
2531 | 2728 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
2532 | 2729 | 4.687262 | ACTCCCTCCGTCCCATAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
2533 | 2730 | 3.562108 | ACTCCCTCCGTCCCATAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
2534 | 2731 | 4.140853 | AGTTACTCCCTCCGTCCCATAATA | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
2535 | 2732 | 2.970640 | GTTACTCCCTCCGTCCCATAAT | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2536 | 2733 | 2.023695 | AGTTACTCCCTCCGTCCCATAA | 60.024 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2537 | 2734 | 1.572415 | AGTTACTCCCTCCGTCCCATA | 59.428 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
2538 | 2735 | 0.338814 | AGTTACTCCCTCCGTCCCAT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2539 | 2736 | 1.002069 | TAGTTACTCCCTCCGTCCCA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2540 | 2737 | 2.378378 | ATAGTTACTCCCTCCGTCCC | 57.622 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2541 | 2738 | 4.750021 | AAAATAGTTACTCCCTCCGTCC | 57.250 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
2542 | 2739 | 5.068855 | AGCTAAAATAGTTACTCCCTCCGTC | 59.931 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2543 | 2740 | 4.961099 | AGCTAAAATAGTTACTCCCTCCGT | 59.039 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
2544 | 2741 | 5.532664 | AGCTAAAATAGTTACTCCCTCCG | 57.467 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
2545 | 2742 | 6.885922 | TGAAGCTAAAATAGTTACTCCCTCC | 58.114 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2705 | 2902 | 2.348666 | GGCATCACTGTGTCATCGTAAC | 59.651 | 50.000 | 7.79 | 0.00 | 0.00 | 2.50 |
2706 | 2903 | 2.028567 | TGGCATCACTGTGTCATCGTAA | 60.029 | 45.455 | 7.79 | 0.00 | 0.00 | 3.18 |
2799 | 2996 | 9.653287 | CACAGGTGTAACAAGAATTCTAGATTA | 57.347 | 33.333 | 8.75 | 5.27 | 39.98 | 1.75 |
2816 | 3013 | 0.677288 | CTTGACGGTCCACAGGTGTA | 59.323 | 55.000 | 5.55 | 0.00 | 0.00 | 2.90 |
2841 | 3038 | 1.882311 | CATAACCAGCCGCAGCAAA | 59.118 | 52.632 | 0.00 | 0.00 | 43.56 | 3.68 |
2842 | 3039 | 2.699768 | GCATAACCAGCCGCAGCAA | 61.700 | 57.895 | 0.00 | 0.00 | 43.56 | 3.91 |
2848 | 3045 | 0.176680 | AGTCAGAGCATAACCAGCCG | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2849 | 3046 | 2.483889 | GGTAGTCAGAGCATAACCAGCC | 60.484 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
2850 | 3047 | 2.483889 | GGGTAGTCAGAGCATAACCAGC | 60.484 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
2851 | 3048 | 3.034635 | AGGGTAGTCAGAGCATAACCAG | 58.965 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2875 | 3072 | 2.260844 | ATCCTGGACCACATATTGCG | 57.739 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2888 | 3085 | 4.384056 | CTCTACACCATAAGCAATCCTGG | 58.616 | 47.826 | 0.00 | 0.00 | 34.84 | 4.45 |
2889 | 3086 | 4.141620 | ACCTCTACACCATAAGCAATCCTG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
2969 | 3168 | 7.559897 | ACATTATGTAGAAACACATTTAGGGGG | 59.440 | 37.037 | 0.00 | 0.00 | 39.77 | 5.40 |
2991 | 3191 | 9.520515 | AGACTGTATGGTATCTTCAAAAACATT | 57.479 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2999 | 3199 | 7.767250 | CCATCTAGACTGTATGGTATCTTCA | 57.233 | 40.000 | 0.00 | 0.00 | 36.26 | 3.02 |
3011 | 3211 | 4.684485 | GCCTATTTGCACCATCTAGACTGT | 60.684 | 45.833 | 0.00 | 0.00 | 0.00 | 3.55 |
3016 | 3216 | 5.779529 | AAATGCCTATTTGCACCATCTAG | 57.220 | 39.130 | 0.00 | 0.00 | 45.48 | 2.43 |
3017 | 3217 | 7.003482 | TGATAAATGCCTATTTGCACCATCTA | 58.997 | 34.615 | 0.00 | 0.00 | 45.48 | 1.98 |
3040 | 3297 | 8.780846 | TGTGACTACTGTTCTTTTAGTTTTGA | 57.219 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
3043 | 3300 | 7.011482 | CAGCTGTGACTACTGTTCTTTTAGTTT | 59.989 | 37.037 | 5.25 | 0.00 | 0.00 | 2.66 |
3063 | 3320 | 5.287674 | AGATATCATAGCAACACAGCTGT | 57.712 | 39.130 | 15.25 | 15.25 | 46.11 | 4.40 |
3088 | 3366 | 4.525487 | ACTAATCTTCGAACAGTGGGTGTA | 59.475 | 41.667 | 0.00 | 0.00 | 39.03 | 2.90 |
3125 | 3403 | 6.204688 | CACAATGACTGAAGTTAAAGCTGGTA | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 3.25 |
3212 | 3491 | 7.651027 | AGCAGCATGATCCTAAAATAAAGTT | 57.349 | 32.000 | 0.00 | 0.00 | 39.69 | 2.66 |
3280 | 3559 | 7.966246 | AAAATATGATCAACAGCTTGCAAAA | 57.034 | 28.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3338 | 3617 | 4.458989 | GTCCCACTCTGAAAATGCACAATA | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
3399 | 3678 | 9.751542 | CATCTATAAGTGTAAAGGTACCTTCAG | 57.248 | 37.037 | 27.24 | 12.41 | 34.84 | 3.02 |
3412 | 3691 | 4.280174 | GCGAGAACCCCATCTATAAGTGTA | 59.720 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
3482 | 3763 | 5.749462 | ACATCTTTCACCTATTTCTCCCTG | 58.251 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3488 | 3769 | 8.778358 | CCTAGCATAACATCTTTCACCTATTTC | 58.222 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
3554 | 3921 | 7.108841 | TCACCTCTATGTCCAGTTTACATAC | 57.891 | 40.000 | 0.00 | 0.00 | 38.49 | 2.39 |
3558 | 3925 | 7.923414 | AAATTCACCTCTATGTCCAGTTTAC | 57.077 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3645 | 4013 | 7.340743 | TCAAACCTCCTTTTCAGTTGAACATAA | 59.659 | 33.333 | 0.00 | 0.00 | 33.13 | 1.90 |
3689 | 4058 | 7.011669 | CCAATTGCTTTGAAGTTTGAACTCATT | 59.988 | 33.333 | 0.00 | 0.00 | 37.53 | 2.57 |
3701 | 4070 | 4.427312 | GGATAGTGCCAATTGCTTTGAAG | 58.573 | 43.478 | 0.00 | 0.00 | 42.00 | 3.02 |
3702 | 4071 | 3.195396 | GGGATAGTGCCAATTGCTTTGAA | 59.805 | 43.478 | 0.00 | 0.00 | 42.00 | 2.69 |
3703 | 4072 | 2.760092 | GGGATAGTGCCAATTGCTTTGA | 59.240 | 45.455 | 0.00 | 0.00 | 42.00 | 2.69 |
3704 | 4073 | 2.762327 | AGGGATAGTGCCAATTGCTTTG | 59.238 | 45.455 | 0.00 | 0.00 | 42.00 | 2.77 |
3705 | 4074 | 3.105959 | AGGGATAGTGCCAATTGCTTT | 57.894 | 42.857 | 0.00 | 0.00 | 42.00 | 3.51 |
3706 | 4075 | 2.834638 | AGGGATAGTGCCAATTGCTT | 57.165 | 45.000 | 0.00 | 0.00 | 42.00 | 3.91 |
3707 | 4076 | 2.834638 | AAGGGATAGTGCCAATTGCT | 57.165 | 45.000 | 0.00 | 0.00 | 42.00 | 3.91 |
3711 | 4080 | 4.601406 | TGGTTAAAGGGATAGTGCCAAT | 57.399 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
3720 | 4089 | 7.454380 | TGAACAAGAATGAATGGTTAAAGGGAT | 59.546 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
3863 | 4238 | 2.160822 | GATCACCATCCAGGATGTCG | 57.839 | 55.000 | 25.35 | 16.60 | 41.22 | 4.35 |
4217 | 4612 | 2.574006 | TTGAGGAGAAAGCATGCAGT | 57.426 | 45.000 | 21.98 | 6.66 | 0.00 | 4.40 |
4233 | 4628 | 6.158695 | ACCTTCAGGGCTTATCTAGAATTTGA | 59.841 | 38.462 | 0.00 | 0.00 | 40.27 | 2.69 |
4267 | 4662 | 7.326454 | CAAATCTGAACACCTTCTCATCTCTA | 58.674 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
4336 | 4731 | 0.255318 | CAGAATGCAGGAGAAGCCCT | 59.745 | 55.000 | 0.00 | 0.00 | 37.37 | 5.19 |
4337 | 4732 | 0.034670 | ACAGAATGCAGGAGAAGCCC | 60.035 | 55.000 | 0.00 | 0.00 | 42.53 | 5.19 |
4378 | 4773 | 4.612259 | GCATGAGCAAATCGGTATGTGATC | 60.612 | 45.833 | 0.00 | 0.00 | 36.46 | 2.92 |
4481 | 4878 | 3.905591 | TGGCTACCTAGTTGTACCAAGTT | 59.094 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
4487 | 4884 | 1.829222 | TGGCTGGCTACCTAGTTGTAC | 59.171 | 52.381 | 2.00 | 0.00 | 0.00 | 2.90 |
4492 | 4889 | 0.336737 | AGTCTGGCTGGCTACCTAGT | 59.663 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4540 | 4937 | 2.238521 | GATGTGCCCTTCAGGTTGAAA | 58.761 | 47.619 | 0.00 | 0.00 | 35.73 | 2.69 |
4575 | 4978 | 6.214399 | AGAACTGTAAACCTCTTCTTACACG | 58.786 | 40.000 | 0.00 | 0.00 | 34.02 | 4.49 |
4629 | 5035 | 4.222145 | ACGGTATGTACAAGGTGACAAGAT | 59.778 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
4650 | 5056 | 2.817258 | TGGAAACAAAGGCCTTATGACG | 59.183 | 45.455 | 20.84 | 7.79 | 37.44 | 4.35 |
4678 | 5084 | 1.078567 | CTCTCAGCTTCCCCACTGC | 60.079 | 63.158 | 0.00 | 0.00 | 33.80 | 4.40 |
4679 | 5085 | 1.078567 | GCTCTCAGCTTCCCCACTG | 60.079 | 63.158 | 0.00 | 0.00 | 38.45 | 3.66 |
4681 | 5087 | 2.125350 | CGCTCTCAGCTTCCCCAC | 60.125 | 66.667 | 0.00 | 0.00 | 39.60 | 4.61 |
4763 | 5173 | 6.502136 | AGTAACTGAAACCCGTAGTAGTAC | 57.498 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
4769 | 5179 | 8.440833 | CAAGAAAATAGTAACTGAAACCCGTAG | 58.559 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
4849 | 5264 | 9.842775 | AAAGAACATCATGCTATATCTCTTGAA | 57.157 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
4856 | 5271 | 9.608617 | CATGACAAAAGAACATCATGCTATATC | 57.391 | 33.333 | 0.51 | 0.00 | 41.31 | 1.63 |
4872 | 5290 | 1.669795 | GGAAAGCCGGCATGACAAAAG | 60.670 | 52.381 | 31.54 | 0.00 | 0.00 | 2.27 |
4916 | 5335 | 1.130373 | CATCCAACAAACCGACGATGG | 59.870 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4949 | 5368 | 8.603304 | AGTACCAGGAATTACAAAACAGATACT | 58.397 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
4950 | 5369 | 8.788325 | AGTACCAGGAATTACAAAACAGATAC | 57.212 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4992 | 5411 | 2.614057 | GCTGTCATGATTCTAAACGGGG | 59.386 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
4996 | 5415 | 4.505922 | CCGAGAGCTGTCATGATTCTAAAC | 59.494 | 45.833 | 11.90 | 0.00 | 0.00 | 2.01 |
5086 | 5505 | 2.544726 | GCTCAGTGCCAACTACCAC | 58.455 | 57.895 | 0.00 | 0.00 | 33.79 | 4.16 |
5125 | 5544 | 1.002033 | GCCTGGCATCAAATTCTAGCG | 60.002 | 52.381 | 15.17 | 0.00 | 0.00 | 4.26 |
5129 | 5548 | 3.893813 | GGAATAGCCTGGCATCAAATTCT | 59.106 | 43.478 | 22.65 | 0.00 | 0.00 | 2.40 |
5162 | 5581 | 2.093890 | TCTAGGCACCGACGAATGTTA | 58.906 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
5163 | 5582 | 0.892755 | TCTAGGCACCGACGAATGTT | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5164 | 5583 | 0.456221 | CTCTAGGCACCGACGAATGT | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5165 | 5584 | 0.872021 | GCTCTAGGCACCGACGAATG | 60.872 | 60.000 | 0.00 | 0.00 | 41.35 | 2.67 |
5272 | 5693 | 5.259832 | TGATGTTGCAGTTTTGACATGAA | 57.740 | 34.783 | 0.00 | 0.00 | 33.21 | 2.57 |
5391 | 5821 | 5.749596 | TGTATGTTGTTGTCTTGTTGAGG | 57.250 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
5400 | 5830 | 7.692291 | CGTCTTTTATCCATGTATGTTGTTGTC | 59.308 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
5408 | 5838 | 7.652727 | TCTCTCTCGTCTTTTATCCATGTATG | 58.347 | 38.462 | 0.00 | 0.00 | 0.00 | 2.39 |
5432 | 5862 | 0.238553 | GCGCCCTGTCTGTTTTTCTC | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
5459 | 5891 | 0.037697 | GGAAAATGACCCCGTTTGGC | 60.038 | 55.000 | 0.00 | 0.00 | 32.24 | 4.52 |
5466 | 5898 | 0.684479 | GGAGGCAGGAAAATGACCCC | 60.684 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
5468 | 5900 | 2.095461 | GAAGGAGGCAGGAAAATGACC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.