Multiple sequence alignment - TraesCS7D01G359000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G359000 chr7D 100.000 6172 0 0 1 6172 461654270 461660441 0.000000e+00 11398
1 TraesCS7D01G359000 chr7D 91.743 109 9 0 5597 5705 617094257 617094149 1.070000e-32 152
2 TraesCS7D01G359000 chr7B 95.030 3461 124 24 2127 5547 484454943 484458395 0.000000e+00 5395
3 TraesCS7D01G359000 chr7B 90.378 1216 57 20 564 1752 484453258 484454440 0.000000e+00 1543
4 TraesCS7D01G359000 chr7B 94.904 471 20 3 5702 6172 484458891 484459357 0.000000e+00 734
5 TraesCS7D01G359000 chr7B 94.776 402 12 5 1735 2129 484454451 484454850 8.790000e-173 617
6 TraesCS7D01G359000 chr7B 87.714 350 31 4 1 348 484452801 484453140 1.250000e-106 398
7 TraesCS7D01G359000 chr7B 84.051 395 17 9 1725 2088 728163658 728164037 7.660000e-89 339
8 TraesCS7D01G359000 chr7B 91.758 182 14 1 387 567 92045841 92046022 1.030000e-62 252
9 TraesCS7D01G359000 chr7B 93.458 107 7 0 5597 5703 683101467 683101573 6.400000e-35 159
10 TraesCS7D01G359000 chr7A 89.899 2574 118 50 860 3338 538519898 538517372 0.000000e+00 3182
11 TraesCS7D01G359000 chr7A 92.760 1326 73 9 4120 5427 538516565 538515245 0.000000e+00 1895
12 TraesCS7D01G359000 chr7A 97.448 627 16 0 3398 4024 538517268 538516642 0.000000e+00 1070
13 TraesCS7D01G359000 chr7A 95.238 315 14 1 5703 6017 538515037 538514724 1.190000e-136 497
14 TraesCS7D01G359000 chr7A 88.421 190 12 5 5422 5601 538515218 538515029 2.900000e-53 220
15 TraesCS7D01G359000 chr7A 91.379 116 10 0 5597 5712 35772594 35772709 6.400000e-35 159
16 TraesCS7D01G359000 chr7A 85.621 153 11 3 643 795 538520072 538519931 3.850000e-32 150
17 TraesCS7D01G359000 chr5A 86.849 730 36 18 1480 2165 470783209 470782496 0.000000e+00 761
18 TraesCS7D01G359000 chr5A 86.501 726 38 16 1484 2165 147354528 147353819 0.000000e+00 743
19 TraesCS7D01G359000 chr5A 82.785 395 22 14 1725 2088 673965271 673964892 1.670000e-80 311
20 TraesCS7D01G359000 chr5A 91.736 121 8 2 5597 5716 510888399 510888518 3.830000e-37 167
21 TraesCS7D01G359000 chr5A 92.593 108 8 0 5597 5704 467377453 467377560 8.280000e-34 156
22 TraesCS7D01G359000 chr3A 86.333 739 42 17 1470 2165 451136602 451137324 0.000000e+00 750
23 TraesCS7D01G359000 chr3A 79.898 393 20 10 1725 2088 750378426 750378788 3.720000e-57 233
24 TraesCS7D01G359000 chr3A 91.860 86 3 2 1340 1425 451136509 451136590 3.910000e-22 117
25 TraesCS7D01G359000 chr4A 86.047 731 43 24 1478 2165 88268138 88267424 0.000000e+00 730
26 TraesCS7D01G359000 chr2B 85.772 738 45 18 1472 2165 623253418 623254139 0.000000e+00 726
27 TraesCS7D01G359000 chr2B 92.668 491 25 5 1470 1952 576815598 576816085 0.000000e+00 697
28 TraesCS7D01G359000 chr2B 93.750 80 2 1 1340 1419 623253323 623253399 3.910000e-22 117
29 TraesCS7D01G359000 chr4B 91.242 491 32 5 1470 1952 636232796 636233283 0.000000e+00 658
30 TraesCS7D01G359000 chr4B 94.152 171 10 0 397 567 551080085 551079915 1.710000e-65 261
31 TraesCS7D01G359000 chr4B 90.517 116 11 0 5591 5706 87405112 87405227 2.980000e-33 154
32 TraesCS7D01G359000 chr4B 90.698 86 4 2 1340 1425 636232703 636232784 1.820000e-20 111
33 TraesCS7D01G359000 chr5B 82.785 395 21 10 1725 2088 104904831 104904453 6.010000e-80 309
34 TraesCS7D01G359000 chr5B 93.642 173 10 1 397 569 427931197 427931368 2.210000e-64 257
35 TraesCS7D01G359000 chr6D 93.642 173 11 0 395 567 406391531 406391359 6.140000e-65 259
36 TraesCS7D01G359000 chr6D 91.351 185 12 3 403 583 32865169 32865353 3.690000e-62 250
37 TraesCS7D01G359000 chr5D 93.642 173 11 0 403 575 368995359 368995531 6.140000e-65 259
38 TraesCS7D01G359000 chr5D 94.444 108 6 0 5597 5704 365693304 365693411 3.830000e-37 167
39 TraesCS7D01G359000 chr3D 93.605 172 11 0 396 567 7607387 7607558 2.210000e-64 257
40 TraesCS7D01G359000 chr3D 91.150 113 10 0 5597 5709 536331138 536331026 2.980000e-33 154
41 TraesCS7D01G359000 chr1D 93.605 172 11 0 396 567 238940209 238940380 2.210000e-64 257
42 TraesCS7D01G359000 chr1D 90.957 188 15 2 382 568 198055869 198055683 1.030000e-62 252
43 TraesCS7D01G359000 chr1B 83.209 268 14 12 1803 2039 617842544 617842811 3.750000e-52 217
44 TraesCS7D01G359000 chr6B 93.750 112 6 1 5596 5706 451478947 451479058 3.830000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G359000 chr7D 461654270 461660441 6171 False 11398.0 11398 100.0000 1 6172 1 chr7D.!!$F1 6171
1 TraesCS7D01G359000 chr7B 484452801 484459357 6556 False 1737.4 5395 92.5604 1 6172 5 chr7B.!!$F4 6171
2 TraesCS7D01G359000 chr7A 538514724 538520072 5348 True 1169.0 3182 91.5645 643 6017 6 chr7A.!!$R1 5374
3 TraesCS7D01G359000 chr5A 470782496 470783209 713 True 761.0 761 86.8490 1480 2165 1 chr5A.!!$R2 685
4 TraesCS7D01G359000 chr5A 147353819 147354528 709 True 743.0 743 86.5010 1484 2165 1 chr5A.!!$R1 681
5 TraesCS7D01G359000 chr3A 451136509 451137324 815 False 433.5 750 89.0965 1340 2165 2 chr3A.!!$F2 825
6 TraesCS7D01G359000 chr4A 88267424 88268138 714 True 730.0 730 86.0470 1478 2165 1 chr4A.!!$R1 687
7 TraesCS7D01G359000 chr2B 623253323 623254139 816 False 421.5 726 89.7610 1340 2165 2 chr2B.!!$F2 825
8 TraesCS7D01G359000 chr4B 636232703 636233283 580 False 384.5 658 90.9700 1340 1952 2 chr4B.!!$F2 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 857 0.161024 GTTCAACCGAAGCGAAGTCG 59.839 55.0 0.00 0.0 43.27 4.18 F
1466 1593 0.093705 GTGTCTGAATTCGAGCGTGC 59.906 55.0 0.04 0.0 0.00 5.34 F
2504 2826 0.462789 GCTCCAAGATTTGCCCCATG 59.537 55.0 0.00 0.0 0.00 3.66 F
2775 3097 0.595095 GGAGCCAGTTGCAAGACAAG 59.405 55.0 0.00 0.0 44.83 3.16 F
3669 4039 0.326264 AGAAAGCTGCACCGGAGAAT 59.674 50.0 9.46 0.0 0.00 2.40 F
4089 4467 0.607217 CCCGTAAACAGGGGGTGAAC 60.607 60.0 0.00 0.0 45.14 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2224 2525 0.250467 ACTCAGGAAACACTGCGCAT 60.250 50.0 12.24 0.0 38.36 4.73 R
3179 3501 0.539051 ATCCTGCAACTCCTTCCTCG 59.461 55.0 0.00 0.0 0.00 4.63 R
3382 3708 0.602562 GCACATGGCAGCCAACTTTA 59.397 50.0 20.84 0.0 43.97 1.85 R
4661 5041 0.250234 TTCGGATGGCCTCTTCTGTG 59.750 55.0 3.32 0.0 0.00 3.66 R
5000 5380 0.167470 CAGCAGCAACACAAGGATCG 59.833 55.0 0.00 0.0 0.00 3.69 R
5657 6537 0.320247 CGTTTCAGACAGCCTGCTCT 60.320 55.0 0.00 0.0 42.62 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.003658 CAAATTTGACATGTAGGTCTTTCTACT 57.996 33.333 13.08 0.00 40.05 2.57
51 52 8.470805 TCTTTCTACTGTCCTCTACATGATTTC 58.529 37.037 0.00 0.00 37.50 2.17
56 57 7.678947 ACTGTCCTCTACATGATTTCTTTTG 57.321 36.000 0.00 0.00 37.50 2.44
57 58 7.227156 ACTGTCCTCTACATGATTTCTTTTGT 58.773 34.615 0.00 0.00 37.50 2.83
58 59 8.375506 ACTGTCCTCTACATGATTTCTTTTGTA 58.624 33.333 0.00 0.00 37.50 2.41
59 60 9.388506 CTGTCCTCTACATGATTTCTTTTGTAT 57.611 33.333 0.00 0.00 37.50 2.29
60 61 9.739276 TGTCCTCTACATGATTTCTTTTGTATT 57.261 29.630 0.00 0.00 31.43 1.89
108 109 8.276252 TGATTTTTCACCTAGCTACAAATACC 57.724 34.615 0.00 0.00 0.00 2.73
112 113 3.453353 TCACCTAGCTACAAATACCCCAC 59.547 47.826 0.00 0.00 0.00 4.61
130 131 3.686241 CCCACGCTCATGTGAATATATGG 59.314 47.826 0.00 0.00 42.55 2.74
136 137 7.359514 CACGCTCATGTGAATATATGGTACAAG 60.360 40.741 0.00 0.00 42.25 3.16
166 167 8.010733 ACTTGATTTCCATTTCTCAAACAAGA 57.989 30.769 0.00 0.00 36.14 3.02
183 184 7.488792 TCAAACAAGATATTGCAAATTCATCCG 59.511 33.333 1.71 1.99 0.00 4.18
188 189 1.529226 TTGCAAATTCATCCGACGGT 58.471 45.000 14.79 0.00 0.00 4.83
201 202 2.627699 TCCGACGGTAGTAAACAGGTTT 59.372 45.455 14.79 2.66 36.63 3.27
246 247 9.647679 CAATCATTGCGAGATATTCATATAAGC 57.352 33.333 0.00 0.00 0.00 3.09
251 252 3.731216 CGAGATATTCATATAAGCGCGGG 59.269 47.826 8.83 0.00 0.00 6.13
276 277 0.883814 GCATCCAAGATGCCTCCTCG 60.884 60.000 16.90 0.00 39.01 4.63
294 295 3.436704 CCTCGCATTTGCTCTGAAGTTTA 59.563 43.478 0.51 0.00 39.32 2.01
297 298 6.012658 TCGCATTTGCTCTGAAGTTTAAAT 57.987 33.333 0.51 0.00 39.32 1.40
315 316 8.387354 AGTTTAAATTTTCTTGGTCGCAAAAAG 58.613 29.630 0.00 0.00 0.00 2.27
316 317 5.733226 AAATTTTCTTGGTCGCAAAAAGG 57.267 34.783 0.00 0.00 0.00 3.11
321 324 3.283751 TCTTGGTCGCAAAAAGGAAGAA 58.716 40.909 0.00 0.00 0.00 2.52
325 328 3.445805 TGGTCGCAAAAAGGAAGAAGTTT 59.554 39.130 0.00 0.00 0.00 2.66
330 333 5.977129 TCGCAAAAAGGAAGAAGTTTGAATC 59.023 36.000 0.00 0.00 33.70 2.52
331 334 5.979517 CGCAAAAAGGAAGAAGTTTGAATCT 59.020 36.000 0.00 0.00 33.70 2.40
350 424 6.377429 TGAATCTTCTTGACTCGGTAGTACAT 59.623 38.462 2.06 0.00 35.56 2.29
353 427 7.081526 TCTTCTTGACTCGGTAGTACATAAC 57.918 40.000 2.06 0.00 35.56 1.89
369 443 4.699637 ACATAACGAAGACAGGACAACAA 58.300 39.130 0.00 0.00 0.00 2.83
386 460 6.656693 GGACAACAACCTAGTACTGTAGTAGA 59.343 42.308 24.58 0.00 34.34 2.59
387 461 7.361628 GGACAACAACCTAGTACTGTAGTAGAC 60.362 44.444 24.58 0.81 34.34 2.59
388 462 7.230027 ACAACAACCTAGTACTGTAGTAGACT 58.770 38.462 24.58 12.22 34.34 3.24
390 464 9.393512 CAACAACCTAGTACTGTAGTAGACTAT 57.606 37.037 24.58 9.68 34.34 2.12
393 467 9.487790 CAACCTAGTACTGTAGTAGACTATACC 57.512 40.741 24.58 0.00 34.34 2.73
394 468 8.201242 ACCTAGTACTGTAGTAGACTATACCC 57.799 42.308 24.58 0.00 34.34 3.69
395 469 8.016054 ACCTAGTACTGTAGTAGACTATACCCT 58.984 40.741 24.58 2.09 34.34 4.34
396 470 9.540538 CCTAGTACTGTAGTAGACTATACCCTA 57.459 40.741 24.58 3.02 34.34 3.53
410 484 9.451206 AGACTATACCCTATATAGTACTCCCTC 57.549 40.741 0.00 0.00 39.91 4.30
411 485 8.580024 ACTATACCCTATATAGTACTCCCTCC 57.420 42.308 0.00 0.00 38.54 4.30
412 486 4.858965 ACCCTATATAGTACTCCCTCCG 57.141 50.000 0.00 0.00 0.00 4.63
413 487 4.182318 ACCCTATATAGTACTCCCTCCGT 58.818 47.826 0.00 0.00 0.00 4.69
414 488 4.605371 ACCCTATATAGTACTCCCTCCGTT 59.395 45.833 0.00 0.00 0.00 4.44
415 489 5.192176 CCCTATATAGTACTCCCTCCGTTC 58.808 50.000 0.00 0.00 0.00 3.95
416 490 5.192176 CCTATATAGTACTCCCTCCGTTCC 58.808 50.000 0.00 0.00 0.00 3.62
417 491 5.044993 CCTATATAGTACTCCCTCCGTTCCT 60.045 48.000 0.00 0.00 0.00 3.36
418 492 6.157645 CCTATATAGTACTCCCTCCGTTCCTA 59.842 46.154 0.00 0.00 0.00 2.94
419 493 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
420 494 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
421 495 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
422 496 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
423 497 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
424 498 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
425 499 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
426 500 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
427 501 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
428 502 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
429 503 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
430 504 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
431 505 7.452189 TCCCTCCGTTCCTAAATATTTGTTTTT 59.548 33.333 11.05 0.00 0.00 1.94
462 536 9.273016 AGATTTTAAATGGACTATCACATACGG 57.727 33.333 0.00 0.00 0.00 4.02
463 537 9.268268 GATTTTAAATGGACTATCACATACGGA 57.732 33.333 0.00 0.00 0.00 4.69
464 538 9.793259 ATTTTAAATGGACTATCACATACGGAT 57.207 29.630 0.00 0.00 0.00 4.18
465 539 8.601845 TTTAAATGGACTATCACATACGGATG 57.398 34.615 5.94 5.94 39.16 3.51
467 541 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
468 542 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
469 543 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
470 544 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
471 545 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
472 546 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
473 547 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
475 549 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
507 581 6.481434 AGTGTAGGTTCACTCAGTTTACTT 57.519 37.500 0.00 0.00 44.07 2.24
508 582 6.885922 AGTGTAGGTTCACTCAGTTTACTTT 58.114 36.000 0.00 0.00 44.07 2.66
509 583 6.761714 AGTGTAGGTTCACTCAGTTTACTTTG 59.238 38.462 0.00 0.00 44.07 2.77
510 584 6.537660 GTGTAGGTTCACTCAGTTTACTTTGT 59.462 38.462 0.00 0.00 35.68 2.83
511 585 7.707893 GTGTAGGTTCACTCAGTTTACTTTGTA 59.292 37.037 0.00 0.00 35.68 2.41
512 586 8.426489 TGTAGGTTCACTCAGTTTACTTTGTAT 58.574 33.333 0.00 0.00 0.00 2.29
513 587 7.730364 AGGTTCACTCAGTTTACTTTGTATG 57.270 36.000 0.00 0.00 0.00 2.39
514 588 7.280356 AGGTTCACTCAGTTTACTTTGTATGT 58.720 34.615 0.00 0.00 0.00 2.29
515 589 8.426489 AGGTTCACTCAGTTTACTTTGTATGTA 58.574 33.333 0.00 0.00 0.00 2.29
516 590 8.709646 GGTTCACTCAGTTTACTTTGTATGTAG 58.290 37.037 0.00 0.00 0.00 2.74
517 591 9.257651 GTTCACTCAGTTTACTTTGTATGTAGT 57.742 33.333 0.00 0.00 0.00 2.73
518 592 9.472361 TTCACTCAGTTTACTTTGTATGTAGTC 57.528 33.333 0.00 0.00 0.00 2.59
519 593 8.635328 TCACTCAGTTTACTTTGTATGTAGTCA 58.365 33.333 0.00 0.00 0.00 3.41
520 594 8.700644 CACTCAGTTTACTTTGTATGTAGTCAC 58.299 37.037 0.00 0.00 0.00 3.67
521 595 8.639761 ACTCAGTTTACTTTGTATGTAGTCACT 58.360 33.333 0.00 0.00 0.00 3.41
522 596 9.477484 CTCAGTTTACTTTGTATGTAGTCACTT 57.523 33.333 0.00 0.00 0.00 3.16
523 597 9.256477 TCAGTTTACTTTGTATGTAGTCACTTG 57.744 33.333 0.00 0.00 0.00 3.16
524 598 9.042008 CAGTTTACTTTGTATGTAGTCACTTGT 57.958 33.333 0.00 0.00 0.00 3.16
525 599 9.609346 AGTTTACTTTGTATGTAGTCACTTGTT 57.391 29.630 0.00 0.00 0.00 2.83
526 600 9.646336 GTTTACTTTGTATGTAGTCACTTGTTG 57.354 33.333 0.00 0.00 0.00 3.33
527 601 9.602568 TTTACTTTGTATGTAGTCACTTGTTGA 57.397 29.630 0.00 0.00 0.00 3.18
528 602 9.602568 TTACTTTGTATGTAGTCACTTGTTGAA 57.397 29.630 0.00 0.00 35.39 2.69
529 603 8.500753 ACTTTGTATGTAGTCACTTGTTGAAA 57.499 30.769 0.00 0.00 35.39 2.69
530 604 9.120538 ACTTTGTATGTAGTCACTTGTTGAAAT 57.879 29.630 0.00 0.00 35.39 2.17
531 605 9.599322 CTTTGTATGTAGTCACTTGTTGAAATC 57.401 33.333 0.00 0.00 35.39 2.17
532 606 8.902540 TTGTATGTAGTCACTTGTTGAAATCT 57.097 30.769 0.00 0.00 35.39 2.40
533 607 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
534 608 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
535 609 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
536 610 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
537 611 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
538 612 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
539 613 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
540 614 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
541 615 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
542 616 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
543 617 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
544 618 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
545 619 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
562 636 9.543018 GAAAGACAAATATTTAAGAACGGAGTG 57.457 33.333 0.00 0.00 45.00 3.51
580 654 5.858049 CGGAGTGAGTACAACGTAAATACAA 59.142 40.000 0.00 0.00 0.00 2.41
593 667 7.410800 ACGTAAATACAAAACATTCTCGTCA 57.589 32.000 0.00 0.00 0.00 4.35
641 715 2.307098 AGCATTCTTCTTGGGTAGCAGT 59.693 45.455 0.00 0.00 0.00 4.40
646 720 2.125106 CTTGGGTAGCAGTCGGGC 60.125 66.667 0.00 0.00 0.00 6.13
724 798 0.828022 AATCGGAGCCATGGAACGTA 59.172 50.000 18.40 6.81 0.00 3.57
762 836 5.643664 TCTCAAATCATTTTCATTCGGCAG 58.356 37.500 0.00 0.00 0.00 4.85
783 857 0.161024 GTTCAACCGAAGCGAAGTCG 59.839 55.000 0.00 0.00 43.27 4.18
841 919 2.008329 CAGAGAAAGCTGCTGGTCATC 58.992 52.381 1.35 4.35 0.00 2.92
904 982 4.083271 GCTGACTTGATTGGTTAGTTGACC 60.083 45.833 0.00 0.00 40.23 4.02
907 985 3.181448 ACTTGATTGGTTAGTTGACCCGT 60.181 43.478 0.00 0.00 39.01 5.28
1397 1520 1.078356 GTCTTCCCTTCTTCGGGGC 60.078 63.158 0.00 0.00 44.78 5.80
1398 1521 1.537889 TCTTCCCTTCTTCGGGGCA 60.538 57.895 0.00 0.00 44.78 5.36
1399 1522 1.377333 CTTCCCTTCTTCGGGGCAC 60.377 63.158 0.00 0.00 44.78 5.01
1426 1549 1.464376 TAGCCGCCTAGATCAGTGGC 61.464 60.000 21.06 21.06 41.83 5.01
1428 1551 1.826024 CCGCCTAGATCAGTGGCTT 59.174 57.895 17.41 0.00 44.09 4.35
1464 1591 0.240145 TCGTGTCTGAATTCGAGCGT 59.760 50.000 0.04 0.00 0.00 5.07
1465 1592 0.363512 CGTGTCTGAATTCGAGCGTG 59.636 55.000 0.04 0.00 0.00 5.34
1466 1593 0.093705 GTGTCTGAATTCGAGCGTGC 59.906 55.000 0.04 0.00 0.00 5.34
1467 1594 1.341802 GTCTGAATTCGAGCGTGCG 59.658 57.895 0.04 0.00 0.00 5.34
1468 1595 1.080772 TCTGAATTCGAGCGTGCGT 60.081 52.632 0.04 0.00 0.00 5.24
1469 1596 1.057822 CTGAATTCGAGCGTGCGTG 59.942 57.895 0.04 0.00 0.00 5.34
1470 1597 2.276058 GAATTCGAGCGTGCGTGC 60.276 61.111 0.00 0.00 0.00 5.34
1471 1598 4.134187 AATTCGAGCGTGCGTGCG 62.134 61.111 0.00 0.00 40.67 5.34
1650 1782 1.194772 GTCGGAGTTTCGCTTTTGAGG 59.805 52.381 0.00 0.00 0.00 3.86
1711 1843 0.777446 TCCCCAAAAGAGGAACCAGG 59.223 55.000 0.00 0.00 0.00 4.45
1720 1852 5.843019 AAAGAGGAACCAGGAATGTAAGA 57.157 39.130 0.00 0.00 0.00 2.10
1769 1929 2.884639 CCCTTTTGTGGATCGTGACTTT 59.115 45.455 0.00 0.00 0.00 2.66
1770 1930 3.317993 CCCTTTTGTGGATCGTGACTTTT 59.682 43.478 0.00 0.00 0.00 2.27
1898 2061 6.746120 TCGGAAGAAAATACTGTAGGATAGC 58.254 40.000 0.00 0.00 37.03 2.97
2025 2222 4.503296 CCCTATTTAGTCCCAATGGTCTCG 60.503 50.000 0.00 0.00 32.03 4.04
2204 2505 6.670027 AGCTCTCTAGACTCCTCCATTTAAAA 59.330 38.462 0.00 0.00 0.00 1.52
2205 2506 7.181125 AGCTCTCTAGACTCCTCCATTTAAAAA 59.819 37.037 0.00 0.00 0.00 1.94
2278 2579 3.689161 TGCATGCAGTTCCATAACTACAC 59.311 43.478 18.46 0.00 44.28 2.90
2377 2692 6.886459 ACTTCAGATGCATTACCAACACTTAT 59.114 34.615 0.00 0.00 0.00 1.73
2394 2709 9.317936 CAACACTTATGAGCATCTCTGTTTATA 57.682 33.333 0.00 0.00 34.92 0.98
2501 2823 0.688749 ATGGCTCCAAGATTTGCCCC 60.689 55.000 0.00 0.00 44.32 5.80
2504 2826 0.462789 GCTCCAAGATTTGCCCCATG 59.537 55.000 0.00 0.00 0.00 3.66
2775 3097 0.595095 GGAGCCAGTTGCAAGACAAG 59.405 55.000 0.00 0.00 44.83 3.16
2975 3297 1.069227 GGACACAGATTTTGACGCCAC 60.069 52.381 0.00 0.00 0.00 5.01
3179 3501 7.277098 TCAACGTATAGATGAAGTAGCAAAACC 59.723 37.037 0.00 0.00 0.00 3.27
3212 3534 3.205338 TGCAGGATAAACCGATGATGTG 58.795 45.455 0.00 0.00 44.74 3.21
3217 3539 4.081142 AGGATAAACCGATGATGTGTGTCA 60.081 41.667 0.00 0.00 44.74 3.58
3361 3687 9.601217 ACTGTTACTATCTAGTGCCTTAAAATG 57.399 33.333 0.06 0.00 37.10 2.32
3363 3689 9.953565 TGTTACTATCTAGTGCCTTAAAATGTT 57.046 29.630 0.06 0.00 37.10 2.71
3370 3696 7.543756 TCTAGTGCCTTAAAATGTTATTTGGC 58.456 34.615 7.50 7.50 39.53 4.52
3371 3697 6.358974 AGTGCCTTAAAATGTTATTTGGCT 57.641 33.333 12.89 0.00 39.77 4.75
3373 3699 7.902087 AGTGCCTTAAAATGTTATTTGGCTAA 58.098 30.769 12.89 0.00 39.77 3.09
3394 3720 8.978539 GGCTAATTAATAAATAAAGTTGGCTGC 58.021 33.333 0.00 0.00 0.00 5.25
3395 3721 8.978539 GCTAATTAATAAATAAAGTTGGCTGCC 58.021 33.333 12.87 12.87 0.00 4.85
3456 3826 5.163395 CCCATCTCCTACTTAGAAGGTTGAC 60.163 48.000 0.00 0.00 35.48 3.18
3483 3853 5.615925 ATCCCCTAAGTTAGTTGCTACTG 57.384 43.478 11.27 0.00 35.78 2.74
3609 3979 4.032960 TGGGTGTAGTGAAGATTTGCAT 57.967 40.909 0.00 0.00 0.00 3.96
3637 4007 2.234661 CAAGATGCACTACAGTGGGAGA 59.765 50.000 11.18 0.00 45.72 3.71
3669 4039 0.326264 AGAAAGCTGCACCGGAGAAT 59.674 50.000 9.46 0.00 0.00 2.40
3774 4144 0.802494 CTGTAACCAACATGGCGACC 59.198 55.000 0.00 0.00 42.67 4.79
3923 4293 4.729552 ATGGGATTGTATACAGGTGCAT 57.270 40.909 5.56 0.00 0.00 3.96
4044 4414 9.219603 CTTTTATGTGTCTCCTTGTAAATCTCA 57.780 33.333 0.00 0.00 0.00 3.27
4073 4451 7.118680 ACATTTCTACTGTGTTGTTAATACCCG 59.881 37.037 0.00 0.00 0.00 5.28
4089 4467 0.607217 CCCGTAAACAGGGGGTGAAC 60.607 60.000 0.00 0.00 45.14 3.18
4104 4482 6.071784 AGGGGGTGAACGTAATTTGATTTAAC 60.072 38.462 0.00 0.00 0.00 2.01
4105 4483 6.294620 GGGGGTGAACGTAATTTGATTTAACA 60.295 38.462 0.00 0.00 0.00 2.41
4141 4519 9.173021 CATCGATGGGGTATTTATTAAATGCTA 57.827 33.333 17.96 5.16 34.43 3.49
4697 5077 1.470098 CGAAAGGGCACATTTCCTGAG 59.530 52.381 0.00 0.00 33.92 3.35
4700 5080 2.725221 AGGGCACATTTCCTGAGATC 57.275 50.000 0.00 0.00 31.11 2.75
4763 5143 2.510551 GCTGGCAAAACTGGGGCTT 61.511 57.895 0.00 0.00 0.00 4.35
4857 5237 1.446016 AAGCAGGGTTACCAGTTCCT 58.554 50.000 2.98 0.00 40.13 3.36
4941 5321 9.134055 AGGTAAAATTCTCTACGTAAGATAGCT 57.866 33.333 0.00 0.00 43.62 3.32
4962 5342 3.785486 TGTCAGTTCAACTGTCACTCTG 58.215 45.455 17.27 0.00 46.03 3.35
4973 5353 4.093011 ACTGTCACTCTGGCTTAAGAGAT 58.907 43.478 6.67 1.65 45.59 2.75
4980 5360 7.984617 GTCACTCTGGCTTAAGAGATAATTTCT 59.015 37.037 6.67 0.00 45.59 2.52
5000 5380 3.126831 CTCGATGCAGGAAGTAATGGAC 58.873 50.000 0.00 0.00 0.00 4.02
5021 5401 1.198637 GATCCTTGTGTTGCTGCTGAC 59.801 52.381 0.00 0.29 0.00 3.51
5158 5538 1.378882 GCGATCCAGCAATGGAAGCA 61.379 55.000 17.60 0.00 41.90 3.91
5219 5614 8.650490 AGATGATTTTTGGTTCCACTTTGTAAT 58.350 29.630 0.00 0.00 0.00 1.89
5265 5662 6.779860 AGTAGCAAGAAGATTTGGTCCTTAA 58.220 36.000 0.00 0.00 39.33 1.85
5283 5680 7.391833 GGTCCTTAAGTGATTCATCTTGTCTTT 59.608 37.037 0.97 0.00 0.00 2.52
5335 5732 6.823689 GCTTCCTGAAATAACTACTGAATCCA 59.176 38.462 0.00 0.00 0.00 3.41
5359 5756 0.837272 ACCCAAGTGCTAGTGTGTGT 59.163 50.000 0.00 0.00 0.00 3.72
5361 5758 1.070758 CCCAAGTGCTAGTGTGTGTCT 59.929 52.381 0.00 0.00 0.00 3.41
5362 5759 2.138320 CCAAGTGCTAGTGTGTGTCTG 58.862 52.381 0.00 0.00 0.00 3.51
5401 5798 3.230976 TGCTGACTACCTGAACTCTTGA 58.769 45.455 0.00 0.00 0.00 3.02
5436 5866 8.324306 ACTCTCCAAGATCACATAAATCTTTCA 58.676 33.333 0.00 0.00 40.61 2.69
5589 6469 1.355971 GATAACCGCTCAACGCAGAA 58.644 50.000 0.00 0.00 41.76 3.02
5620 6500 8.723942 ATACTACCTCTGCTCATTTTTACAAG 57.276 34.615 0.00 0.00 0.00 3.16
5621 6501 6.769512 ACTACCTCTGCTCATTTTTACAAGA 58.230 36.000 0.00 0.00 0.00 3.02
5622 6502 5.948992 ACCTCTGCTCATTTTTACAAGAC 57.051 39.130 0.00 0.00 0.00 3.01
5623 6503 4.452455 ACCTCTGCTCATTTTTACAAGACG 59.548 41.667 0.00 0.00 0.00 4.18
5624 6504 4.452455 CCTCTGCTCATTTTTACAAGACGT 59.548 41.667 0.00 0.00 0.00 4.34
5625 6505 5.049405 CCTCTGCTCATTTTTACAAGACGTT 60.049 40.000 0.00 0.00 0.00 3.99
5626 6506 6.371809 TCTGCTCATTTTTACAAGACGTTT 57.628 33.333 0.00 0.00 0.00 3.60
5627 6507 6.791303 TCTGCTCATTTTTACAAGACGTTTT 58.209 32.000 0.00 0.00 0.00 2.43
5628 6508 7.921787 TCTGCTCATTTTTACAAGACGTTTTA 58.078 30.769 0.00 0.00 0.00 1.52
5629 6509 8.067784 TCTGCTCATTTTTACAAGACGTTTTAG 58.932 33.333 0.00 0.00 0.00 1.85
5630 6510 7.921787 TGCTCATTTTTACAAGACGTTTTAGA 58.078 30.769 0.00 0.00 0.00 2.10
5631 6511 7.853929 TGCTCATTTTTACAAGACGTTTTAGAC 59.146 33.333 0.00 0.00 0.00 2.59
5632 6512 7.853929 GCTCATTTTTACAAGACGTTTTAGACA 59.146 33.333 0.00 0.00 0.00 3.41
5633 6513 9.878599 CTCATTTTTACAAGACGTTTTAGACAT 57.121 29.630 0.00 0.00 0.00 3.06
5637 6517 9.710979 TTTTTACAAGACGTTTTAGACATTCAG 57.289 29.630 0.00 0.00 0.00 3.02
5638 6518 8.651391 TTTACAAGACGTTTTAGACATTCAGA 57.349 30.769 0.00 0.00 0.00 3.27
5639 6519 6.526566 ACAAGACGTTTTAGACATTCAGAC 57.473 37.500 0.00 0.00 0.00 3.51
5640 6520 6.046593 ACAAGACGTTTTAGACATTCAGACA 58.953 36.000 0.00 0.00 0.00 3.41
5641 6521 6.018994 ACAAGACGTTTTAGACATTCAGACAC 60.019 38.462 0.00 0.00 0.00 3.67
5642 6522 5.844004 AGACGTTTTAGACATTCAGACACT 58.156 37.500 0.00 0.00 0.00 3.55
5643 6523 5.692204 AGACGTTTTAGACATTCAGACACTG 59.308 40.000 0.00 0.00 0.00 3.66
5644 6524 5.357257 ACGTTTTAGACATTCAGACACTGT 58.643 37.500 0.00 0.00 32.61 3.55
5645 6525 5.815740 ACGTTTTAGACATTCAGACACTGTT 59.184 36.000 0.00 0.00 32.61 3.16
5646 6526 6.018994 ACGTTTTAGACATTCAGACACTGTTC 60.019 38.462 0.00 0.00 32.61 3.18
5647 6527 6.019075 CGTTTTAGACATTCAGACACTGTTCA 60.019 38.462 0.00 0.00 32.61 3.18
5648 6528 7.465379 CGTTTTAGACATTCAGACACTGTTCAA 60.465 37.037 0.00 0.00 32.61 2.69
5649 6529 7.857734 TTTAGACATTCAGACACTGTTCAAA 57.142 32.000 0.00 0.00 32.61 2.69
5650 6530 7.857734 TTAGACATTCAGACACTGTTCAAAA 57.142 32.000 0.00 0.00 32.61 2.44
5651 6531 6.124088 AGACATTCAGACACTGTTCAAAAC 57.876 37.500 0.00 0.00 32.61 2.43
5652 6532 5.647658 AGACATTCAGACACTGTTCAAAACA 59.352 36.000 0.00 0.00 39.52 2.83
5665 6545 4.695455 TGTTCAAAACAGTATAGAGCAGGC 59.305 41.667 0.00 0.00 36.25 4.85
5666 6546 4.826274 TCAAAACAGTATAGAGCAGGCT 57.174 40.909 0.00 0.00 0.00 4.58
5667 6547 4.507710 TCAAAACAGTATAGAGCAGGCTG 58.492 43.478 10.94 10.94 0.00 4.85
5668 6548 4.020218 TCAAAACAGTATAGAGCAGGCTGT 60.020 41.667 17.16 2.59 41.51 4.40
5669 6549 3.810310 AACAGTATAGAGCAGGCTGTC 57.190 47.619 17.16 12.11 39.19 3.51
5670 6550 3.025322 ACAGTATAGAGCAGGCTGTCT 57.975 47.619 17.16 18.20 35.78 3.41
5671 6551 2.692557 ACAGTATAGAGCAGGCTGTCTG 59.307 50.000 21.92 4.57 46.03 3.51
5672 6552 2.954989 CAGTATAGAGCAGGCTGTCTGA 59.045 50.000 21.92 11.85 46.18 3.27
5673 6553 3.382865 CAGTATAGAGCAGGCTGTCTGAA 59.617 47.826 21.92 11.72 46.18 3.02
5674 6554 4.026744 AGTATAGAGCAGGCTGTCTGAAA 58.973 43.478 21.92 9.10 46.18 2.69
5675 6555 2.751166 TAGAGCAGGCTGTCTGAAAC 57.249 50.000 21.92 3.20 46.18 2.78
5676 6556 0.320247 AGAGCAGGCTGTCTGAAACG 60.320 55.000 14.48 0.00 46.18 3.60
5677 6557 0.601311 GAGCAGGCTGTCTGAAACGT 60.601 55.000 14.48 0.00 46.18 3.99
5678 6558 0.601311 AGCAGGCTGTCTGAAACGTC 60.601 55.000 14.48 0.00 46.18 4.34
5679 6559 0.601311 GCAGGCTGTCTGAAACGTCT 60.601 55.000 14.48 0.00 46.18 4.18
5680 6560 1.871080 CAGGCTGTCTGAAACGTCTT 58.129 50.000 2.37 0.00 46.18 3.01
5681 6561 2.866460 GCAGGCTGTCTGAAACGTCTTA 60.866 50.000 14.48 0.00 46.18 2.10
5682 6562 3.589988 CAGGCTGTCTGAAACGTCTTAT 58.410 45.455 2.37 0.00 46.18 1.73
5683 6563 4.744570 CAGGCTGTCTGAAACGTCTTATA 58.255 43.478 2.37 0.00 46.18 0.98
5684 6564 4.800993 CAGGCTGTCTGAAACGTCTTATAG 59.199 45.833 2.37 0.00 46.18 1.31
5685 6565 4.705507 AGGCTGTCTGAAACGTCTTATAGA 59.294 41.667 0.00 0.00 0.00 1.98
5686 6566 5.185249 AGGCTGTCTGAAACGTCTTATAGAA 59.815 40.000 0.00 0.00 0.00 2.10
5687 6567 5.867716 GGCTGTCTGAAACGTCTTATAGAAA 59.132 40.000 0.00 0.00 0.00 2.52
5688 6568 6.183360 GGCTGTCTGAAACGTCTTATAGAAAC 60.183 42.308 0.00 0.00 0.00 2.78
5689 6569 6.365247 GCTGTCTGAAACGTCTTATAGAAACA 59.635 38.462 0.00 0.00 0.00 2.83
5690 6570 7.095774 GCTGTCTGAAACGTCTTATAGAAACAA 60.096 37.037 0.00 0.00 0.00 2.83
5691 6571 8.651391 TGTCTGAAACGTCTTATAGAAACAAA 57.349 30.769 0.00 0.00 0.00 2.83
5692 6572 8.545420 TGTCTGAAACGTCTTATAGAAACAAAC 58.455 33.333 0.00 0.00 0.00 2.93
5693 6573 8.545420 GTCTGAAACGTCTTATAGAAACAAACA 58.455 33.333 0.00 0.00 0.00 2.83
5694 6574 8.761497 TCTGAAACGTCTTATAGAAACAAACAG 58.239 33.333 0.00 0.00 0.00 3.16
5695 6575 8.651391 TGAAACGTCTTATAGAAACAAACAGA 57.349 30.769 0.00 0.00 0.00 3.41
5696 6576 8.761497 TGAAACGTCTTATAGAAACAAACAGAG 58.239 33.333 0.00 0.00 0.00 3.35
5697 6577 7.653767 AACGTCTTATAGAAACAAACAGAGG 57.346 36.000 0.00 0.00 0.00 3.69
5698 6578 6.164176 ACGTCTTATAGAAACAAACAGAGGG 58.836 40.000 0.00 0.00 0.00 4.30
5699 6579 6.014840 ACGTCTTATAGAAACAAACAGAGGGA 60.015 38.462 0.00 0.00 0.00 4.20
5700 6580 6.531948 CGTCTTATAGAAACAAACAGAGGGAG 59.468 42.308 0.00 0.00 0.00 4.30
5779 6659 1.066430 TCCAGAAATGTCCAGCGGTAC 60.066 52.381 0.00 0.00 0.00 3.34
5782 6662 1.207329 AGAAATGTCCAGCGGTACCTC 59.793 52.381 10.90 0.94 0.00 3.85
5786 6666 0.040058 TGTCCAGCGGTACCTCCTAA 59.960 55.000 10.90 0.00 0.00 2.69
5959 6839 0.804364 GCGATGTTCTTGTCCATGCA 59.196 50.000 0.00 0.00 0.00 3.96
6082 6962 9.586435 AAAACTCTAGAAACCAATGAAGTTTTG 57.414 29.630 8.58 0.00 37.55 2.44
6083 6963 6.739112 ACTCTAGAAACCAATGAAGTTTTGC 58.261 36.000 0.00 0.00 37.55 3.68
6084 6964 6.547510 ACTCTAGAAACCAATGAAGTTTTGCT 59.452 34.615 0.00 0.00 37.55 3.91
6085 6965 7.068716 ACTCTAGAAACCAATGAAGTTTTGCTT 59.931 33.333 0.00 0.00 37.55 3.91
6086 6966 7.781056 TCTAGAAACCAATGAAGTTTTGCTTT 58.219 30.769 0.00 0.00 37.55 3.51
6087 6967 6.667007 AGAAACCAATGAAGTTTTGCTTTG 57.333 33.333 0.00 0.00 37.55 2.77
6089 6969 3.871485 ACCAATGAAGTTTTGCTTTGCA 58.129 36.364 0.00 0.00 37.59 4.08
6090 6970 4.453751 ACCAATGAAGTTTTGCTTTGCAT 58.546 34.783 0.00 0.00 38.76 3.96
6091 6971 4.512571 ACCAATGAAGTTTTGCTTTGCATC 59.487 37.500 0.00 0.00 38.76 3.91
6092 6972 4.512198 CCAATGAAGTTTTGCTTTGCATCA 59.488 37.500 0.00 0.00 38.76 3.07
6101 6981 2.358957 TGCTTTGCATCAGTAGCGAAT 58.641 42.857 0.00 0.00 35.02 3.34
6149 7029 8.623903 ACAATTAATTCACAGTTCATCGCATAT 58.376 29.630 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.258216 TGTAGAGGACAGTAGAAAGACCT 57.742 43.478 0.00 0.00 32.86 3.85
34 35 9.739276 AATACAAAAGAAATCATGTAGAGGACA 57.261 29.630 0.00 0.00 43.97 4.02
93 94 2.805657 GCGTGGGGTATTTGTAGCTAGG 60.806 54.545 0.00 0.00 0.00 3.02
108 109 3.686241 CCATATATTCACATGAGCGTGGG 59.314 47.826 0.00 0.00 37.50 4.61
112 113 6.646653 ACTTGTACCATATATTCACATGAGCG 59.353 38.462 0.00 0.00 0.00 5.03
162 163 5.622448 CGTCGGATGAATTTGCAATATCTTG 59.378 40.000 0.00 1.14 35.36 3.02
163 164 5.277974 CCGTCGGATGAATTTGCAATATCTT 60.278 40.000 4.91 0.00 0.00 2.40
166 167 3.882888 ACCGTCGGATGAATTTGCAATAT 59.117 39.130 20.51 0.00 0.00 1.28
183 184 3.992427 CCAGAAACCTGTTTACTACCGTC 59.008 47.826 0.00 0.00 32.11 4.79
188 189 5.061179 GCAGTTCCAGAAACCTGTTTACTA 58.939 41.667 0.00 0.00 38.76 1.82
201 202 3.894257 CTGTCGAAGCAGTTCCAGA 57.106 52.632 0.00 0.00 28.40 3.86
223 224 6.019559 GCGCTTATATGAATATCTCGCAATGA 60.020 38.462 0.00 0.00 36.17 2.57
230 231 3.491267 GCCCGCGCTTATATGAATATCTC 59.509 47.826 5.56 0.00 0.00 2.75
251 252 3.113745 CATCTTGGATGCCACGGC 58.886 61.111 0.00 0.00 42.35 5.68
276 277 8.768019 AGAAAATTTAAACTTCAGAGCAAATGC 58.232 29.630 12.19 0.00 42.49 3.56
283 284 7.113544 GCGACCAAGAAAATTTAAACTTCAGAG 59.886 37.037 12.19 4.95 0.00 3.35
294 295 5.423886 TCCTTTTTGCGACCAAGAAAATTT 58.576 33.333 0.00 0.00 31.52 1.82
297 298 4.158764 TCTTCCTTTTTGCGACCAAGAAAA 59.841 37.500 0.00 0.00 31.52 2.29
304 305 3.710326 AACTTCTTCCTTTTTGCGACC 57.290 42.857 0.00 0.00 0.00 4.79
321 324 4.962155 ACCGAGTCAAGAAGATTCAAACT 58.038 39.130 0.00 0.00 32.88 2.66
325 328 5.708697 TGTACTACCGAGTCAAGAAGATTCA 59.291 40.000 0.00 0.00 37.10 2.57
330 333 5.964168 CGTTATGTACTACCGAGTCAAGAAG 59.036 44.000 0.00 0.00 37.10 2.85
331 334 5.643348 TCGTTATGTACTACCGAGTCAAGAA 59.357 40.000 0.00 0.00 37.10 2.52
340 343 4.333649 TCCTGTCTTCGTTATGTACTACCG 59.666 45.833 0.00 0.00 0.00 4.02
350 424 3.133362 AGGTTGTTGTCCTGTCTTCGTTA 59.867 43.478 0.00 0.00 33.62 3.18
353 427 2.240493 AGGTTGTTGTCCTGTCTTCG 57.760 50.000 0.00 0.00 33.62 3.79
369 443 8.016054 AGGGTATAGTCTACTACAGTACTAGGT 58.984 40.741 0.00 0.00 0.00 3.08
386 460 7.292120 CGGAGGGAGTACTATATAGGGTATAGT 59.708 44.444 14.25 11.26 41.85 2.12
387 461 7.292120 ACGGAGGGAGTACTATATAGGGTATAG 59.708 44.444 14.25 1.58 34.55 1.31
388 462 7.142364 ACGGAGGGAGTACTATATAGGGTATA 58.858 42.308 14.25 0.00 0.00 1.47
390 464 5.353986 ACGGAGGGAGTACTATATAGGGTA 58.646 45.833 14.25 0.00 0.00 3.69
391 465 4.182318 ACGGAGGGAGTACTATATAGGGT 58.818 47.826 14.25 0.00 0.00 4.34
393 467 5.044993 AGGAACGGAGGGAGTACTATATAGG 60.045 48.000 14.25 0.00 0.00 2.57
394 468 6.064735 AGGAACGGAGGGAGTACTATATAG 57.935 45.833 8.27 8.27 0.00 1.31
395 469 7.574021 TTAGGAACGGAGGGAGTACTATATA 57.426 40.000 0.00 0.00 0.00 0.86
396 470 6.460103 TTAGGAACGGAGGGAGTACTATAT 57.540 41.667 0.00 0.00 0.00 0.86
397 471 5.912149 TTAGGAACGGAGGGAGTACTATA 57.088 43.478 0.00 0.00 0.00 1.31
398 472 4.803329 TTAGGAACGGAGGGAGTACTAT 57.197 45.455 0.00 0.00 0.00 2.12
399 473 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
400 474 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
401 475 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
402 476 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
403 477 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
404 478 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
405 479 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
406 480 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
436 510 9.273016 CCGTATGTGATAGTCCATTTAAAATCT 57.727 33.333 0.00 0.00 0.00 2.40
437 511 9.268268 TCCGTATGTGATAGTCCATTTAAAATC 57.732 33.333 0.00 0.00 0.00 2.17
438 512 9.793259 ATCCGTATGTGATAGTCCATTTAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
439 513 9.051679 CATCCGTATGTGATAGTCCATTTAAAA 57.948 33.333 0.00 0.00 0.00 1.52
440 514 8.208224 ACATCCGTATGTGATAGTCCATTTAAA 58.792 33.333 0.00 0.00 44.79 1.52
441 515 7.732025 ACATCCGTATGTGATAGTCCATTTAA 58.268 34.615 0.00 0.00 44.79 1.52
442 516 7.297936 ACATCCGTATGTGATAGTCCATTTA 57.702 36.000 0.00 0.00 44.79 1.40
443 517 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
444 518 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
445 519 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
446 520 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
447 521 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
449 523 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
471 545 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
485 559 6.537660 ACAAAGTAAACTGAGTGAACCTACAC 59.462 38.462 0.00 0.00 40.60 2.90
486 560 6.646267 ACAAAGTAAACTGAGTGAACCTACA 58.354 36.000 0.00 0.00 0.00 2.74
487 561 8.709646 CATACAAAGTAAACTGAGTGAACCTAC 58.290 37.037 0.00 0.00 0.00 3.18
488 562 8.426489 ACATACAAAGTAAACTGAGTGAACCTA 58.574 33.333 0.00 0.00 0.00 3.08
489 563 7.280356 ACATACAAAGTAAACTGAGTGAACCT 58.720 34.615 0.00 0.00 0.00 3.50
490 564 7.492352 ACATACAAAGTAAACTGAGTGAACC 57.508 36.000 0.00 0.00 0.00 3.62
491 565 9.257651 ACTACATACAAAGTAAACTGAGTGAAC 57.742 33.333 0.00 0.00 0.00 3.18
492 566 9.472361 GACTACATACAAAGTAAACTGAGTGAA 57.528 33.333 0.00 0.00 0.00 3.18
493 567 8.635328 TGACTACATACAAAGTAAACTGAGTGA 58.365 33.333 0.00 0.00 0.00 3.41
494 568 8.700644 GTGACTACATACAAAGTAAACTGAGTG 58.299 37.037 0.00 0.00 0.00 3.51
495 569 8.639761 AGTGACTACATACAAAGTAAACTGAGT 58.360 33.333 0.00 0.00 0.00 3.41
496 570 9.477484 AAGTGACTACATACAAAGTAAACTGAG 57.523 33.333 0.00 0.00 0.00 3.35
497 571 9.256477 CAAGTGACTACATACAAAGTAAACTGA 57.744 33.333 0.00 0.00 0.00 3.41
498 572 9.042008 ACAAGTGACTACATACAAAGTAAACTG 57.958 33.333 0.00 0.00 0.00 3.16
499 573 9.609346 AACAAGTGACTACATACAAAGTAAACT 57.391 29.630 0.00 0.00 0.00 2.66
500 574 9.646336 CAACAAGTGACTACATACAAAGTAAAC 57.354 33.333 0.00 0.00 0.00 2.01
501 575 9.602568 TCAACAAGTGACTACATACAAAGTAAA 57.397 29.630 0.00 0.00 0.00 2.01
502 576 9.602568 TTCAACAAGTGACTACATACAAAGTAA 57.397 29.630 0.00 0.00 35.39 2.24
503 577 9.602568 TTTCAACAAGTGACTACATACAAAGTA 57.397 29.630 0.00 0.00 35.39 2.24
504 578 8.500753 TTTCAACAAGTGACTACATACAAAGT 57.499 30.769 0.00 0.00 35.39 2.66
505 579 9.599322 GATTTCAACAAGTGACTACATACAAAG 57.401 33.333 0.00 0.00 35.39 2.77
506 580 9.337396 AGATTTCAACAAGTGACTACATACAAA 57.663 29.630 0.00 0.00 35.39 2.83
507 581 8.902540 AGATTTCAACAAGTGACTACATACAA 57.097 30.769 0.00 0.00 35.39 2.41
508 582 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
509 583 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
511 585 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
512 586 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
513 587 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
514 588 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
515 589 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
516 590 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
517 591 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
518 592 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
519 593 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
535 609 9.503399 ACTCCGTTCTTAAATATTTGTCTTTCT 57.497 29.630 11.05 0.00 0.00 2.52
536 610 9.543018 CACTCCGTTCTTAAATATTTGTCTTTC 57.457 33.333 11.05 0.00 0.00 2.62
537 611 9.280174 TCACTCCGTTCTTAAATATTTGTCTTT 57.720 29.630 11.05 0.00 0.00 2.52
538 612 8.842358 TCACTCCGTTCTTAAATATTTGTCTT 57.158 30.769 11.05 0.00 0.00 3.01
539 613 8.095169 ACTCACTCCGTTCTTAAATATTTGTCT 58.905 33.333 11.05 0.00 0.00 3.41
540 614 8.252964 ACTCACTCCGTTCTTAAATATTTGTC 57.747 34.615 11.05 0.00 0.00 3.18
541 615 9.148104 GTACTCACTCCGTTCTTAAATATTTGT 57.852 33.333 11.05 0.00 0.00 2.83
542 616 9.146984 TGTACTCACTCCGTTCTTAAATATTTG 57.853 33.333 11.05 0.00 0.00 2.32
543 617 9.715121 TTGTACTCACTCCGTTCTTAAATATTT 57.285 29.630 5.89 5.89 0.00 1.40
544 618 9.148104 GTTGTACTCACTCCGTTCTTAAATATT 57.852 33.333 0.00 0.00 0.00 1.28
545 619 7.487189 CGTTGTACTCACTCCGTTCTTAAATAT 59.513 37.037 0.00 0.00 0.00 1.28
546 620 6.803320 CGTTGTACTCACTCCGTTCTTAAATA 59.197 38.462 0.00 0.00 0.00 1.40
547 621 5.632347 CGTTGTACTCACTCCGTTCTTAAAT 59.368 40.000 0.00 0.00 0.00 1.40
548 622 4.977963 CGTTGTACTCACTCCGTTCTTAAA 59.022 41.667 0.00 0.00 0.00 1.52
549 623 4.036734 ACGTTGTACTCACTCCGTTCTTAA 59.963 41.667 0.00 0.00 30.88 1.85
550 624 3.565482 ACGTTGTACTCACTCCGTTCTTA 59.435 43.478 0.00 0.00 30.88 2.10
551 625 2.360165 ACGTTGTACTCACTCCGTTCTT 59.640 45.455 0.00 0.00 30.88 2.52
552 626 1.952296 ACGTTGTACTCACTCCGTTCT 59.048 47.619 0.00 0.00 30.88 3.01
553 627 2.412421 ACGTTGTACTCACTCCGTTC 57.588 50.000 0.00 0.00 30.88 3.95
554 628 3.988379 TTACGTTGTACTCACTCCGTT 57.012 42.857 0.00 0.00 34.83 4.44
555 629 3.988379 TTTACGTTGTACTCACTCCGT 57.012 42.857 0.00 0.00 36.29 4.69
556 630 5.393124 TGTATTTACGTTGTACTCACTCCG 58.607 41.667 0.00 0.00 0.00 4.63
557 631 7.642071 TTTGTATTTACGTTGTACTCACTCC 57.358 36.000 0.00 0.00 0.00 3.85
558 632 8.542132 TGTTTTGTATTTACGTTGTACTCACTC 58.458 33.333 0.00 0.00 0.00 3.51
559 633 8.422973 TGTTTTGTATTTACGTTGTACTCACT 57.577 30.769 0.00 0.00 0.00 3.41
560 634 9.654417 AATGTTTTGTATTTACGTTGTACTCAC 57.346 29.630 0.00 0.00 0.00 3.51
561 635 9.866936 GAATGTTTTGTATTTACGTTGTACTCA 57.133 29.630 0.00 0.00 0.00 3.41
606 680 6.520272 AGAAGAATGCTCTGCGTCTATTATT 58.480 36.000 0.00 0.00 31.55 1.40
608 682 5.521906 AGAAGAATGCTCTGCGTCTATTA 57.478 39.130 0.00 0.00 31.55 0.98
615 689 0.731417 CCCAAGAAGAATGCTCTGCG 59.269 55.000 0.00 0.00 31.55 5.18
616 690 1.831580 ACCCAAGAAGAATGCTCTGC 58.168 50.000 0.00 0.00 30.03 4.26
621 695 2.680339 GACTGCTACCCAAGAAGAATGC 59.320 50.000 0.00 0.00 33.95 3.56
646 720 4.189188 CGCGACGTGGAGGTAGGG 62.189 72.222 0.00 0.00 0.00 3.53
740 814 4.266976 GCTGCCGAATGAAAATGATTTGAG 59.733 41.667 0.00 0.00 0.00 3.02
757 831 3.295228 CTTCGGTTGAACGCTGCCG 62.295 63.158 0.00 0.00 44.95 5.69
762 836 1.154654 CTTCGCTTCGGTTGAACGC 60.155 57.895 0.00 0.00 32.43 4.84
801 879 0.613292 TCCTGTGAGAGGTGAGAGGC 60.613 60.000 0.00 0.00 43.37 4.70
919 997 0.406361 AGGAGGAGTCGAGGTCTTGT 59.594 55.000 0.00 0.00 0.00 3.16
921 999 0.033894 GGAGGAGGAGTCGAGGTCTT 60.034 60.000 0.00 0.00 0.00 3.01
922 1000 1.610873 GGAGGAGGAGTCGAGGTCT 59.389 63.158 0.00 0.00 0.00 3.85
923 1001 1.820481 CGGAGGAGGAGTCGAGGTC 60.820 68.421 0.00 0.00 0.00 3.85
924 1002 2.272797 CGGAGGAGGAGTCGAGGT 59.727 66.667 0.00 0.00 0.00 3.85
925 1003 3.213402 GCGGAGGAGGAGTCGAGG 61.213 72.222 0.00 0.00 0.00 4.63
1631 1763 1.069513 TCCTCAAAAGCGAAACTCCGA 59.930 47.619 0.00 0.00 0.00 4.55
1650 1782 3.821421 ACTATCCAGATTCGTTGGGTC 57.179 47.619 0.00 0.00 36.34 4.46
1711 1843 6.265649 TCTGCTCCCTACACTATCTTACATTC 59.734 42.308 0.00 0.00 0.00 2.67
1720 1852 3.041946 CCCTTTCTGCTCCCTACACTAT 58.958 50.000 0.00 0.00 0.00 2.12
1769 1929 5.576447 TGCGTAACATGAGATAGTGAGAA 57.424 39.130 0.00 0.00 0.00 2.87
1770 1930 5.774498 ATGCGTAACATGAGATAGTGAGA 57.226 39.130 0.00 0.00 37.70 3.27
1898 2061 2.652941 ACCAACACACACTTTGCAAG 57.347 45.000 0.00 0.00 0.00 4.01
2121 2323 8.499406 AGAGGTAGAGAGTAAGAATGTATGAGT 58.501 37.037 0.00 0.00 0.00 3.41
2122 2324 8.783093 CAGAGGTAGAGAGTAAGAATGTATGAG 58.217 40.741 0.00 0.00 0.00 2.90
2123 2325 7.229707 GCAGAGGTAGAGAGTAAGAATGTATGA 59.770 40.741 0.00 0.00 0.00 2.15
2134 2434 4.410555 TCATGAGAGCAGAGGTAGAGAGTA 59.589 45.833 0.00 0.00 0.00 2.59
2136 2436 3.819368 TCATGAGAGCAGAGGTAGAGAG 58.181 50.000 0.00 0.00 0.00 3.20
2224 2525 0.250467 ACTCAGGAAACACTGCGCAT 60.250 50.000 12.24 0.00 38.36 4.73
2230 2531 7.621683 AGGAATTCTATAGACTCAGGAAACACT 59.378 37.037 0.67 0.00 0.00 3.55
2409 2724 1.333619 CACAACTGGCTTAAACGTGCT 59.666 47.619 0.00 0.00 0.00 4.40
2410 2725 1.753956 CACAACTGGCTTAAACGTGC 58.246 50.000 0.00 0.00 0.00 5.34
2411 2726 1.599419 GGCACAACTGGCTTAAACGTG 60.599 52.381 0.00 0.00 39.91 4.49
2412 2727 0.666374 GGCACAACTGGCTTAAACGT 59.334 50.000 0.00 0.00 39.91 3.99
2413 2728 0.665835 TGGCACAACTGGCTTAAACG 59.334 50.000 0.00 0.00 43.53 3.60
2975 3297 2.232208 GGAAATTCCTTCAACTGGCCAG 59.768 50.000 31.60 31.60 35.55 4.85
3081 3403 4.814234 TGCCAACTCACAATTACCGATATC 59.186 41.667 0.00 0.00 0.00 1.63
3085 3407 2.552599 TGCCAACTCACAATTACCGA 57.447 45.000 0.00 0.00 0.00 4.69
3179 3501 0.539051 ATCCTGCAACTCCTTCCTCG 59.461 55.000 0.00 0.00 0.00 4.63
3212 3534 5.626258 GTGATTTTCACAAGCTTTGACAC 57.374 39.130 0.00 5.51 46.22 3.67
3237 3559 9.959721 ATATCACTAACCTTTTTCTTAGCTTGA 57.040 29.630 0.00 0.00 0.00 3.02
3346 3672 7.547227 AGCCAAATAACATTTTAAGGCACTAG 58.453 34.615 12.66 0.00 38.49 2.57
3368 3694 8.978539 GCAGCCAACTTTATTTATTAATTAGCC 58.021 33.333 0.00 0.00 0.00 3.93
3373 3699 8.485392 ACATGGCAGCCAACTTTATTTATTAAT 58.515 29.630 20.84 0.00 36.95 1.40
3377 3703 5.663456 CACATGGCAGCCAACTTTATTTAT 58.337 37.500 20.84 0.00 36.95 1.40
3379 3705 3.865684 GCACATGGCAGCCAACTTTATTT 60.866 43.478 20.84 0.00 43.97 1.40
3380 3706 2.354003 GCACATGGCAGCCAACTTTATT 60.354 45.455 20.84 0.00 43.97 1.40
3381 3707 1.205417 GCACATGGCAGCCAACTTTAT 59.795 47.619 20.84 0.00 43.97 1.40
3382 3708 0.602562 GCACATGGCAGCCAACTTTA 59.397 50.000 20.84 0.00 43.97 1.85
3383 3709 1.368579 GCACATGGCAGCCAACTTT 59.631 52.632 20.84 0.00 43.97 2.66
3392 3718 4.564926 TCACTCGATGAAGCACATGGCA 62.565 50.000 8.58 0.00 39.56 4.92
3394 3720 1.662629 GTCACTCGATGAAGCACATGG 59.337 52.381 0.00 1.10 39.72 3.66
3395 3721 2.340337 TGTCACTCGATGAAGCACATG 58.660 47.619 1.29 0.00 39.72 3.21
3396 3722 2.749280 TGTCACTCGATGAAGCACAT 57.251 45.000 0.00 0.00 39.72 3.21
3456 3826 5.990668 AGCAACTAACTTAGGGGATTAGTG 58.009 41.667 0.88 0.00 38.76 2.74
3483 3853 1.463056 TGCAAAGCGTAGTGTATGCAC 59.537 47.619 5.71 5.71 43.07 4.57
3669 4039 9.283768 TCTTCAATAGCTCTGAAATGTTTGTTA 57.716 29.630 11.23 0.00 32.57 2.41
3774 4144 0.875059 GAACCTTTGCCTTCTCGGTG 59.125 55.000 0.00 0.00 34.25 4.94
3923 4293 3.834813 AGCTACTTCAGTGTGATCAAGGA 59.165 43.478 0.00 0.00 0.00 3.36
4024 4394 7.676004 TGTTATGAGATTTACAAGGAGACACA 58.324 34.615 0.00 0.00 0.00 3.72
4053 4423 7.384660 TGTTTACGGGTATTAACAACACAGTAG 59.615 37.037 0.00 0.00 0.00 2.57
4073 4451 2.837532 TACGTTCACCCCCTGTTTAC 57.162 50.000 0.00 0.00 0.00 2.01
4115 4493 8.055279 AGCATTTAATAAATACCCCATCGATG 57.945 34.615 18.76 18.76 0.00 3.84
4283 4663 3.758973 TTGGCGCCCTTCGTTGTCA 62.759 57.895 26.77 0.00 41.07 3.58
4529 4909 3.951037 GGTCCATGTAATACATTGTGCCA 59.049 43.478 2.67 0.00 36.53 4.92
4661 5041 0.250234 TTCGGATGGCCTCTTCTGTG 59.750 55.000 3.32 0.00 0.00 3.66
4662 5042 0.984230 TTTCGGATGGCCTCTTCTGT 59.016 50.000 3.32 0.00 0.00 3.41
4663 5043 1.661341 CTTTCGGATGGCCTCTTCTG 58.339 55.000 3.32 3.76 0.00 3.02
4697 5077 4.452795 TCATTCAGAGATACGTCGAGGATC 59.547 45.833 12.85 10.16 40.62 3.36
4700 5080 4.757799 ATCATTCAGAGATACGTCGAGG 57.242 45.455 3.03 3.03 0.00 4.63
4763 5143 2.469826 CATCTTAGCGCCGTACAATGA 58.530 47.619 2.29 0.00 0.00 2.57
4857 5237 4.221703 TGCTTTTGGACTTTCAAACTTCCA 59.778 37.500 0.00 0.00 36.49 3.53
4973 5353 6.483307 CCATTACTTCCTGCATCGAGAAATTA 59.517 38.462 0.00 0.00 0.00 1.40
4980 5360 2.481276 CGTCCATTACTTCCTGCATCGA 60.481 50.000 0.00 0.00 0.00 3.59
4981 5361 1.860950 CGTCCATTACTTCCTGCATCG 59.139 52.381 0.00 0.00 0.00 3.84
4991 5371 4.253685 CAACACAAGGATCGTCCATTACT 58.746 43.478 6.78 0.00 39.61 2.24
5000 5380 0.167470 CAGCAGCAACACAAGGATCG 59.833 55.000 0.00 0.00 0.00 3.69
5021 5401 1.370172 GCGCTCGTAGGTATGACCG 60.370 63.158 0.00 0.00 44.90 4.79
5248 5644 7.461749 TGAATCACTTAAGGACCAAATCTTCT 58.538 34.615 7.53 0.00 0.00 2.85
5265 5662 7.881751 TCTGAATGAAAGACAAGATGAATCACT 59.118 33.333 0.00 0.00 0.00 3.41
5283 5680 1.208052 GGCTGTACCTGCTCTGAATGA 59.792 52.381 7.69 0.00 34.51 2.57
5359 5756 2.147958 GCAACGTCCAAACCATACAGA 58.852 47.619 0.00 0.00 0.00 3.41
5361 5758 1.876799 CAGCAACGTCCAAACCATACA 59.123 47.619 0.00 0.00 0.00 2.29
5362 5759 1.401018 GCAGCAACGTCCAAACCATAC 60.401 52.381 0.00 0.00 0.00 2.39
5401 5798 5.485353 TGTGATCTTGGAGAGTATTCAAGGT 59.515 40.000 5.96 0.00 38.59 3.50
5436 5866 6.149633 GCGAGAAACAACAAATTTGTATCCT 58.850 36.000 23.53 15.37 41.31 3.24
5495 5925 8.170553 GCTGGCAATGTAAAATGTTTTCTTATG 58.829 33.333 0.00 0.00 0.00 1.90
5505 5935 3.214697 TGACGCTGGCAATGTAAAATG 57.785 42.857 0.00 0.00 0.00 2.32
5594 6474 9.817809 CTTGTAAAAATGAGCAGAGGTAGTATA 57.182 33.333 0.00 0.00 0.00 1.47
5595 6475 8.540388 TCTTGTAAAAATGAGCAGAGGTAGTAT 58.460 33.333 0.00 0.00 0.00 2.12
5596 6476 7.817962 GTCTTGTAAAAATGAGCAGAGGTAGTA 59.182 37.037 0.00 0.00 0.00 1.82
5598 6478 6.183360 CGTCTTGTAAAAATGAGCAGAGGTAG 60.183 42.308 0.00 0.00 0.00 3.18
5599 6479 5.637810 CGTCTTGTAAAAATGAGCAGAGGTA 59.362 40.000 0.00 0.00 0.00 3.08
5600 6480 4.452455 CGTCTTGTAAAAATGAGCAGAGGT 59.548 41.667 0.00 0.00 0.00 3.85
5601 6481 4.452455 ACGTCTTGTAAAAATGAGCAGAGG 59.548 41.667 0.00 0.00 0.00 3.69
5602 6482 5.597813 ACGTCTTGTAAAAATGAGCAGAG 57.402 39.130 0.00 0.00 0.00 3.35
5603 6483 6.371809 AAACGTCTTGTAAAAATGAGCAGA 57.628 33.333 0.00 0.00 0.00 4.26
5604 6484 8.067784 TCTAAAACGTCTTGTAAAAATGAGCAG 58.932 33.333 0.00 0.00 0.00 4.24
5605 6485 7.853929 GTCTAAAACGTCTTGTAAAAATGAGCA 59.146 33.333 0.00 0.00 0.00 4.26
5606 6486 7.853929 TGTCTAAAACGTCTTGTAAAAATGAGC 59.146 33.333 0.00 0.00 0.00 4.26
5607 6487 9.878599 ATGTCTAAAACGTCTTGTAAAAATGAG 57.121 29.630 0.00 0.00 0.00 2.90
5611 6491 9.710979 CTGAATGTCTAAAACGTCTTGTAAAAA 57.289 29.630 0.00 0.00 0.00 1.94
5612 6492 9.100554 TCTGAATGTCTAAAACGTCTTGTAAAA 57.899 29.630 0.00 0.00 0.00 1.52
5613 6493 8.545420 GTCTGAATGTCTAAAACGTCTTGTAAA 58.455 33.333 0.00 0.00 0.00 2.01
5614 6494 7.707464 TGTCTGAATGTCTAAAACGTCTTGTAA 59.293 33.333 0.00 0.00 0.00 2.41
5615 6495 7.168637 GTGTCTGAATGTCTAAAACGTCTTGTA 59.831 37.037 0.00 0.00 0.00 2.41
5616 6496 6.018994 GTGTCTGAATGTCTAAAACGTCTTGT 60.019 38.462 0.00 0.00 0.00 3.16
5617 6497 6.201044 AGTGTCTGAATGTCTAAAACGTCTTG 59.799 38.462 0.00 0.00 0.00 3.02
5618 6498 6.201044 CAGTGTCTGAATGTCTAAAACGTCTT 59.799 38.462 0.00 0.00 32.44 3.01
5619 6499 5.692204 CAGTGTCTGAATGTCTAAAACGTCT 59.308 40.000 0.00 0.00 32.44 4.18
5620 6500 5.462398 ACAGTGTCTGAATGTCTAAAACGTC 59.538 40.000 3.70 0.00 35.18 4.34
5621 6501 5.357257 ACAGTGTCTGAATGTCTAAAACGT 58.643 37.500 3.70 0.00 35.18 3.99
5622 6502 5.907197 ACAGTGTCTGAATGTCTAAAACG 57.093 39.130 3.70 0.00 35.18 3.60
5623 6503 7.246674 TGAACAGTGTCTGAATGTCTAAAAC 57.753 36.000 0.00 0.00 35.18 2.43
5624 6504 7.857734 TTGAACAGTGTCTGAATGTCTAAAA 57.142 32.000 0.00 0.00 35.18 1.52
5625 6505 7.857734 TTTGAACAGTGTCTGAATGTCTAAA 57.142 32.000 0.00 0.00 35.18 1.85
5626 6506 7.335673 TGTTTTGAACAGTGTCTGAATGTCTAA 59.664 33.333 0.00 0.00 36.25 2.10
5627 6507 6.821160 TGTTTTGAACAGTGTCTGAATGTCTA 59.179 34.615 0.00 0.00 36.25 2.59
5628 6508 5.647658 TGTTTTGAACAGTGTCTGAATGTCT 59.352 36.000 0.00 0.00 36.25 3.41
5629 6509 5.879237 TGTTTTGAACAGTGTCTGAATGTC 58.121 37.500 0.00 0.00 36.25 3.06
5630 6510 5.895636 TGTTTTGAACAGTGTCTGAATGT 57.104 34.783 0.00 0.00 36.25 2.71
5642 6522 4.695455 GCCTGCTCTATACTGTTTTGAACA 59.305 41.667 0.00 0.00 39.52 3.18
5643 6523 4.938226 AGCCTGCTCTATACTGTTTTGAAC 59.062 41.667 0.00 0.00 0.00 3.18
5644 6524 4.937620 CAGCCTGCTCTATACTGTTTTGAA 59.062 41.667 0.00 0.00 0.00 2.69
5645 6525 4.020218 ACAGCCTGCTCTATACTGTTTTGA 60.020 41.667 0.00 0.00 38.38 2.69
5646 6526 4.256920 ACAGCCTGCTCTATACTGTTTTG 58.743 43.478 0.00 0.00 38.38 2.44
5647 6527 4.223923 AGACAGCCTGCTCTATACTGTTTT 59.776 41.667 0.00 0.00 41.45 2.43
5648 6528 3.772025 AGACAGCCTGCTCTATACTGTTT 59.228 43.478 0.00 0.00 41.45 2.83
5649 6529 3.131933 CAGACAGCCTGCTCTATACTGTT 59.868 47.826 0.00 0.00 41.45 3.16
5650 6530 2.692557 CAGACAGCCTGCTCTATACTGT 59.307 50.000 0.00 0.00 43.93 3.55
5651 6531 2.954989 TCAGACAGCCTGCTCTATACTG 59.045 50.000 0.00 0.00 42.62 2.74
5652 6532 3.304911 TCAGACAGCCTGCTCTATACT 57.695 47.619 0.00 0.00 42.62 2.12
5653 6533 4.116238 GTTTCAGACAGCCTGCTCTATAC 58.884 47.826 0.00 0.00 42.62 1.47
5654 6534 3.181486 CGTTTCAGACAGCCTGCTCTATA 60.181 47.826 0.00 0.00 42.62 1.31
5655 6535 2.417924 CGTTTCAGACAGCCTGCTCTAT 60.418 50.000 0.00 0.00 42.62 1.98
5656 6536 1.067565 CGTTTCAGACAGCCTGCTCTA 60.068 52.381 0.00 0.00 42.62 2.43
5657 6537 0.320247 CGTTTCAGACAGCCTGCTCT 60.320 55.000 0.00 0.00 42.62 4.09
5658 6538 0.601311 ACGTTTCAGACAGCCTGCTC 60.601 55.000 0.00 0.00 42.62 4.26
5659 6539 0.601311 GACGTTTCAGACAGCCTGCT 60.601 55.000 0.00 0.00 42.62 4.24
5660 6540 0.601311 AGACGTTTCAGACAGCCTGC 60.601 55.000 0.00 0.00 42.62 4.85
5661 6541 1.871080 AAGACGTTTCAGACAGCCTG 58.129 50.000 0.00 0.00 44.27 4.85
5662 6542 3.963428 ATAAGACGTTTCAGACAGCCT 57.037 42.857 0.00 0.00 0.00 4.58
5663 6543 4.995124 TCTATAAGACGTTTCAGACAGCC 58.005 43.478 0.00 0.00 0.00 4.85
5664 6544 6.365247 TGTTTCTATAAGACGTTTCAGACAGC 59.635 38.462 0.00 0.00 0.00 4.40
5665 6545 7.869016 TGTTTCTATAAGACGTTTCAGACAG 57.131 36.000 0.00 0.00 0.00 3.51
5666 6546 8.545420 GTTTGTTTCTATAAGACGTTTCAGACA 58.455 33.333 0.00 0.00 0.00 3.41
5667 6547 8.545420 TGTTTGTTTCTATAAGACGTTTCAGAC 58.455 33.333 0.00 0.00 0.00 3.51
5668 6548 8.651391 TGTTTGTTTCTATAAGACGTTTCAGA 57.349 30.769 0.00 0.00 0.00 3.27
5669 6549 8.761497 TCTGTTTGTTTCTATAAGACGTTTCAG 58.239 33.333 0.00 0.00 0.00 3.02
5670 6550 8.651391 TCTGTTTGTTTCTATAAGACGTTTCA 57.349 30.769 0.00 0.00 0.00 2.69
5671 6551 8.221766 CCTCTGTTTGTTTCTATAAGACGTTTC 58.778 37.037 0.00 0.00 0.00 2.78
5672 6552 7.172703 CCCTCTGTTTGTTTCTATAAGACGTTT 59.827 37.037 0.00 0.00 0.00 3.60
5673 6553 6.649557 CCCTCTGTTTGTTTCTATAAGACGTT 59.350 38.462 0.00 0.00 0.00 3.99
5674 6554 6.014840 TCCCTCTGTTTGTTTCTATAAGACGT 60.015 38.462 0.00 0.00 0.00 4.34
5675 6555 6.395629 TCCCTCTGTTTGTTTCTATAAGACG 58.604 40.000 0.00 0.00 0.00 4.18
5676 6556 7.387643 ACTCCCTCTGTTTGTTTCTATAAGAC 58.612 38.462 0.00 0.00 0.00 3.01
5677 6557 7.554959 ACTCCCTCTGTTTGTTTCTATAAGA 57.445 36.000 0.00 0.00 0.00 2.10
5683 6563 9.047947 AGTATTATACTCCCTCTGTTTGTTTCT 57.952 33.333 0.00 0.00 32.47 2.52
5686 6566 8.925338 CCTAGTATTATACTCCCTCTGTTTGTT 58.075 37.037 8.29 0.00 40.14 2.83
5687 6567 8.066247 ACCTAGTATTATACTCCCTCTGTTTGT 58.934 37.037 8.29 0.00 40.14 2.83
5688 6568 8.480133 ACCTAGTATTATACTCCCTCTGTTTG 57.520 38.462 8.29 0.00 40.14 2.93
5689 6569 9.585369 GTACCTAGTATTATACTCCCTCTGTTT 57.415 37.037 8.29 0.00 40.14 2.83
5690 6570 8.730948 TGTACCTAGTATTATACTCCCTCTGTT 58.269 37.037 8.29 0.00 40.14 3.16
5691 6571 8.285350 TGTACCTAGTATTATACTCCCTCTGT 57.715 38.462 8.29 1.94 40.14 3.41
5692 6572 7.337436 GCTGTACCTAGTATTATACTCCCTCTG 59.663 44.444 8.29 3.55 40.14 3.35
5693 6573 7.404481 GCTGTACCTAGTATTATACTCCCTCT 58.596 42.308 8.29 0.00 40.14 3.69
5694 6574 6.602803 GGCTGTACCTAGTATTATACTCCCTC 59.397 46.154 8.29 0.00 40.14 4.30
5695 6575 6.492274 GGCTGTACCTAGTATTATACTCCCT 58.508 44.000 8.29 0.00 40.14 4.20
5696 6576 6.772360 GGCTGTACCTAGTATTATACTCCC 57.228 45.833 8.29 0.00 40.14 4.30
5779 6659 4.192317 CCTGTTCCGAAAGAATTAGGAGG 58.808 47.826 0.00 0.00 40.77 4.30
5782 6662 4.575885 TCACCTGTTCCGAAAGAATTAGG 58.424 43.478 0.00 0.00 42.78 2.69
5786 6666 3.753272 CACATCACCTGTTCCGAAAGAAT 59.247 43.478 0.00 0.00 35.29 2.40
5959 6839 1.134670 GTAGCGAGGAGTGGCTGAAAT 60.135 52.381 0.00 0.00 38.38 2.17
6067 6947 4.260170 TGCAAAGCAAAACTTCATTGGTT 58.740 34.783 0.00 0.00 46.93 3.67
6081 6961 1.807139 TTCGCTACTGATGCAAAGCA 58.193 45.000 0.00 0.00 44.86 3.91
6082 6962 3.103738 CAATTCGCTACTGATGCAAAGC 58.896 45.455 0.00 0.00 0.00 3.51
6083 6963 3.103738 GCAATTCGCTACTGATGCAAAG 58.896 45.455 0.00 0.00 37.77 2.77
6084 6964 2.487372 TGCAATTCGCTACTGATGCAAA 59.513 40.909 0.00 0.00 40.47 3.68
6085 6965 2.083002 TGCAATTCGCTACTGATGCAA 58.917 42.857 0.00 0.00 40.47 4.08
6086 6966 1.736612 TGCAATTCGCTACTGATGCA 58.263 45.000 0.00 0.00 43.06 3.96
6087 6967 2.830772 TTGCAATTCGCTACTGATGC 57.169 45.000 0.00 0.00 43.06 3.91
6089 6969 2.749076 TGCTTTGCAATTCGCTACTGAT 59.251 40.909 0.00 0.00 43.06 2.90
6090 6970 2.150390 TGCTTTGCAATTCGCTACTGA 58.850 42.857 0.00 0.00 43.06 3.41
6091 6971 2.512885 CTGCTTTGCAATTCGCTACTG 58.487 47.619 0.00 0.00 43.06 2.74
6092 6972 1.470098 CCTGCTTTGCAATTCGCTACT 59.530 47.619 0.00 0.00 43.06 2.57
6101 6981 2.964464 TGGAGAATTTCCTGCTTTGCAA 59.036 40.909 0.00 0.00 46.92 4.08
6108 6988 7.818930 TGAATTAATTGTTGGAGAATTTCCTGC 59.181 33.333 5.17 0.00 46.92 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.