Multiple sequence alignment - TraesCS7D01G358800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G358800 chr7D 100.000 2783 0 0 1 2783 461627339 461630121 0.000000e+00 5140.0
1 TraesCS7D01G358800 chr7D 88.509 322 21 7 357 678 82851435 82851130 2.620000e-100 375.0
2 TraesCS7D01G358800 chr7D 79.717 424 64 15 2361 2766 630696308 630696727 1.260000e-73 287.0
3 TraesCS7D01G358800 chr7B 93.866 1027 47 11 758 1781 484271952 484272965 0.000000e+00 1533.0
4 TraesCS7D01G358800 chr7B 92.352 1033 65 8 758 1781 486670051 486671078 0.000000e+00 1458.0
5 TraesCS7D01G358800 chr7B 89.037 374 32 5 1779 2152 484273006 484273370 3.270000e-124 455.0
6 TraesCS7D01G358800 chr7B 88.770 374 30 6 1779 2152 486671119 486671480 5.470000e-122 448.0
7 TraesCS7D01G358800 chr7B 89.097 321 20 5 357 677 731129527 731129222 4.350000e-103 385.0
8 TraesCS7D01G358800 chr7B 88.608 316 22 5 357 672 617829739 617830040 3.390000e-99 372.0
9 TraesCS7D01G358800 chr7B 84.770 348 33 9 335 679 637304297 637303967 5.750000e-87 331.0
10 TraesCS7D01G358800 chr7B 90.265 226 17 5 758 980 486660319 486660542 9.750000e-75 291.0
11 TraesCS7D01G358800 chr7B 81.089 349 53 11 2330 2668 104022589 104022244 1.640000e-67 267.0
12 TraesCS7D01G358800 chr7B 96.269 134 2 2 2186 2319 484273365 484273495 1.680000e-52 217.0
13 TraesCS7D01G358800 chr7B 95.420 131 2 3 2188 2318 486671477 486671603 3.630000e-49 206.0
14 TraesCS7D01G358800 chr7B 92.771 83 6 0 1 83 486658637 486658719 1.350000e-23 121.0
15 TraesCS7D01G358800 chr5D 89.557 316 19 4 357 672 563904576 563904275 3.360000e-104 388.0
16 TraesCS7D01G358800 chr5D 88.199 322 23 5 357 678 67572369 67572063 1.220000e-98 370.0
17 TraesCS7D01G358800 chr5D 86.891 267 21 4 357 623 420996398 420996146 1.260000e-73 287.0
18 TraesCS7D01G358800 chr5B 89.557 316 19 4 357 672 8364007 8364308 3.360000e-104 388.0
19 TraesCS7D01G358800 chr5B 85.484 310 27 8 369 677 703506295 703506587 9.680000e-80 307.0
20 TraesCS7D01G358800 chr5B 80.178 338 55 10 2330 2658 184281409 184281075 2.770000e-60 243.0
21 TraesCS7D01G358800 chr3D 76.128 842 139 38 993 1779 527075027 527074193 4.350000e-103 385.0
22 TraesCS7D01G358800 chr2B 88.924 316 21 4 357 672 142654826 142654525 7.280000e-101 377.0
23 TraesCS7D01G358800 chr2B 88.818 313 21 4 357 669 20072350 20072648 3.390000e-99 372.0
24 TraesCS7D01G358800 chr2B 86.164 318 28 6 367 684 110818107 110817806 2.070000e-86 329.0
25 TraesCS7D01G358800 chr7A 86.751 317 38 4 357 672 507170766 507171079 1.590000e-92 350.0
26 TraesCS7D01G358800 chr4A 86.667 330 27 8 344 672 166997406 166997093 1.590000e-92 350.0
27 TraesCS7D01G358800 chr4A 86.061 330 29 8 344 672 166994216 166993903 3.430000e-89 339.0
28 TraesCS7D01G358800 chr4A 96.078 51 1 1 2142 2191 621583688 621583738 6.390000e-12 82.4
29 TraesCS7D01G358800 chr4A 92.593 54 3 1 2137 2189 59254326 59254273 2.970000e-10 76.8
30 TraesCS7D01G358800 chr3B 86.728 324 28 5 357 679 8039099 8039408 2.050000e-91 346.0
31 TraesCS7D01G358800 chr2A 87.025 316 27 4 357 672 7915465 7915766 7.380000e-91 344.0
32 TraesCS7D01G358800 chr2A 83.434 332 37 7 343 674 706508248 706508561 2.710000e-75 292.0
33 TraesCS7D01G358800 chr2A 97.826 46 1 0 2146 2191 618975030 618975075 2.300000e-11 80.5
34 TraesCS7D01G358800 chr2A 95.833 48 2 0 2144 2191 407739271 407739224 8.260000e-11 78.7
35 TraesCS7D01G358800 chr5A 85.119 336 33 7 338 672 425720635 425720954 7.430000e-86 327.0
36 TraesCS7D01G358800 chr5A 84.527 349 33 11 358 704 637120432 637120103 2.670000e-85 326.0
37 TraesCS7D01G358800 chr5A 83.529 340 38 7 336 672 708633558 708633882 4.500000e-78 302.0
38 TraesCS7D01G358800 chr5A 81.879 298 42 9 2431 2718 38970601 38970306 9.960000e-60 241.0
39 TraesCS7D01G358800 chr5A 76.709 468 64 22 2326 2771 47111606 47112050 4.670000e-53 219.0
40 TraesCS7D01G358800 chr6A 81.519 395 49 11 285 672 539232236 539231859 1.250000e-78 303.0
41 TraesCS7D01G358800 chr6A 82.927 82 9 4 2144 2225 572846313 572846237 4.970000e-08 69.4
42 TraesCS7D01G358800 chr3A 85.522 297 27 6 357 652 118589109 118588828 2.100000e-76 296.0
43 TraesCS7D01G358800 chr2D 82.748 313 45 6 2353 2658 645444203 645443893 1.270000e-68 270.0
44 TraesCS7D01G358800 chr2D 89.474 57 5 1 2134 2189 638444171 638444227 1.380000e-08 71.3
45 TraesCS7D01G358800 chrUn 81.967 305 46 6 2431 2726 155118847 155119151 1.650000e-62 250.0
46 TraesCS7D01G358800 chrUn 81.639 305 47 6 2431 2726 164266328 164266024 7.700000e-61 244.0
47 TraesCS7D01G358800 chrUn 81.639 305 46 7 2431 2726 428129833 428129530 7.700000e-61 244.0
48 TraesCS7D01G358800 chr1A 81.967 305 44 9 2431 2726 427951793 427952095 5.950000e-62 248.0
49 TraesCS7D01G358800 chr1A 94.118 51 1 2 2142 2191 222368182 222368133 2.970000e-10 76.8
50 TraesCS7D01G358800 chr1A 95.833 48 1 1 2144 2191 561977644 561977598 2.970000e-10 76.8
51 TraesCS7D01G358800 chr4B 80.826 339 43 11 363 698 570146903 570146584 2.140000e-61 246.0
52 TraesCS7D01G358800 chr1D 84.583 240 23 4 357 596 189706482 189706257 2.790000e-55 226.0
53 TraesCS7D01G358800 chr6B 79.944 354 31 16 336 684 713563139 713563457 1.000000e-54 224.0
54 TraesCS7D01G358800 chr1B 96.000 125 4 1 556 680 630474382 630474259 4.700000e-48 202.0
55 TraesCS7D01G358800 chr6D 81.771 192 24 5 2600 2783 11237074 11237262 1.730000e-32 150.0
56 TraesCS7D01G358800 chr6D 95.833 48 1 1 2144 2191 467187261 467187215 2.970000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G358800 chr7D 461627339 461630121 2782 False 5140.0 5140 100.000000 1 2783 1 chr7D.!!$F1 2782
1 TraesCS7D01G358800 chr7B 484271952 484273495 1543 False 735.0 1533 93.057333 758 2319 3 chr7B.!!$F2 1561
2 TraesCS7D01G358800 chr7B 486670051 486671603 1552 False 704.0 1458 92.180667 758 2318 3 chr7B.!!$F4 1560
3 TraesCS7D01G358800 chr7B 486658637 486660542 1905 False 206.0 291 91.518000 1 980 2 chr7B.!!$F3 979
4 TraesCS7D01G358800 chr3D 527074193 527075027 834 True 385.0 385 76.128000 993 1779 1 chr3D.!!$R1 786
5 TraesCS7D01G358800 chr4A 166993903 166997406 3503 True 344.5 350 86.364000 344 672 2 chr4A.!!$R2 328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 1292 0.179184 GTCTTCGTGGAGCTCTCGTC 60.179 60.0 22.94 6.31 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 5724 0.398318 GCACACCAGTCCTCTTCCTT 59.602 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.910195 TGACTCCACATTGCTAGAAACAT 58.090 39.130 0.00 0.00 0.00 2.71
76 77 3.609373 CCACATTGCTAGAAACATTTGCG 59.391 43.478 0.00 0.00 0.00 4.85
83 84 3.667960 GCTAGAAACATTTGCGTGTCAGG 60.668 47.826 0.00 0.00 0.00 3.86
99 119 1.971357 TCAGGAGACTTGGGAGTTCAC 59.029 52.381 0.00 0.00 40.21 3.18
117 137 2.126071 AAGATCCACGTGGCGTCG 60.126 61.111 30.25 6.02 38.32 5.12
123 143 3.487202 CACGTGGCGTCGGATTGG 61.487 66.667 7.95 0.00 38.32 3.16
130 150 4.891727 CGTCGGATTGGGAGGGCG 62.892 72.222 0.00 0.00 0.00 6.13
145 1277 4.681978 GCGTGGTCGGCTGGTCTT 62.682 66.667 0.00 0.00 37.56 3.01
147 1279 2.432628 GTGGTCGGCTGGTCTTCG 60.433 66.667 0.00 0.00 0.00 3.79
149 1281 2.432628 GGTCGGCTGGTCTTCGTG 60.433 66.667 0.00 0.00 0.00 4.35
155 1287 1.446966 GCTGGTCTTCGTGGAGCTC 60.447 63.158 4.71 4.71 35.11 4.09
158 1290 1.137825 GGTCTTCGTGGAGCTCTCG 59.862 63.158 14.64 17.86 0.00 4.04
160 1292 0.179184 GTCTTCGTGGAGCTCTCGTC 60.179 60.000 22.94 6.31 0.00 4.20
166 1299 1.730772 CGTGGAGCTCTCGTCAAGAAG 60.731 57.143 14.64 0.00 32.23 2.85
179 1312 4.022935 TCGTCAAGAAGTTAACGCTAGGAA 60.023 41.667 0.00 0.00 35.22 3.36
259 1392 9.773328 CAAAGCACATAATCTCTTTAAATTCGA 57.227 29.630 0.00 0.00 0.00 3.71
262 1395 9.941664 AGCACATAATCTCTTTAAATTCGATTG 57.058 29.630 12.99 5.20 0.00 2.67
279 1412 5.251764 TCGATTGTAGTCTAGGTATAGGGC 58.748 45.833 0.00 0.00 0.00 5.19
288 1421 0.843984 AGGTATAGGGCGCCATGTTT 59.156 50.000 30.85 13.46 0.00 2.83
289 1422 0.951558 GGTATAGGGCGCCATGTTTG 59.048 55.000 30.85 0.00 0.00 2.93
290 1423 0.951558 GTATAGGGCGCCATGTTTGG 59.048 55.000 30.85 0.00 46.66 3.28
291 1424 0.548989 TATAGGGCGCCATGTTTGGT 59.451 50.000 30.85 7.43 45.57 3.67
306 1439 2.197324 GGTTGGTTGCTCCCCACA 59.803 61.111 0.00 0.00 34.77 4.17
311 1444 3.763671 GTTGCTCCCCACAACCAG 58.236 61.111 0.00 0.00 41.22 4.00
321 1454 4.746466 TCCCCACAACCAGAATTTTGTAT 58.254 39.130 0.00 0.00 34.12 2.29
334 1467 7.864379 CCAGAATTTTGTATCTATGAACATGGC 59.136 37.037 0.00 0.00 0.00 4.40
347 1480 9.625747 TCTATGAACATGGCTACAAATCAATAA 57.374 29.630 0.00 0.00 0.00 1.40
355 1488 5.244851 TGGCTACAAATCAATAAAGTTGGCA 59.755 36.000 0.00 0.00 37.92 4.92
383 1517 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
384 1518 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
407 1541 1.308657 TGTGGTATCCCCAGCCCAT 60.309 57.895 0.00 0.00 46.45 4.00
435 1569 5.343249 GTTTAAATCCTGATGCTCGCATTT 58.657 37.500 5.79 0.00 36.70 2.32
436 1570 6.459573 GGTTTAAATCCTGATGCTCGCATTTA 60.460 38.462 5.79 0.00 36.70 1.40
437 1571 4.558538 AAATCCTGATGCTCGCATTTAC 57.441 40.909 5.79 0.00 36.70 2.01
443 1577 2.168313 TGATGCTCGCATTTACTCCTGA 59.832 45.455 5.79 0.00 36.70 3.86
484 1618 1.872952 CGATGCGCATTTAATGGGAGA 59.127 47.619 26.12 10.53 45.09 3.71
492 1626 5.679638 GCGCATTTAATGGGAGAAGATGTTT 60.680 40.000 23.14 0.00 45.09 2.83
500 1634 2.159085 GGGAGAAGATGTTTCCGTCGAT 60.159 50.000 0.00 0.00 31.59 3.59
516 1650 2.827190 ATGACGAGGCGCCTACGA 60.827 61.111 37.37 24.57 43.93 3.43
519 1653 2.827190 ACGAGGCGCCTACGATGA 60.827 61.111 37.37 0.00 43.93 2.92
535 1669 7.224753 GCCTACGATGACTTCATAAATCTCAAA 59.775 37.037 0.00 0.00 36.57 2.69
554 1688 1.439679 AAAAGAAAGAGGCGCCTACG 58.560 50.000 32.97 0.00 44.07 3.51
558 1692 1.491505 GAAAGAGGCGCCTACGATGC 61.492 60.000 32.97 16.49 43.93 3.91
570 1704 1.320344 TACGATGCCGGCTCAGTCTT 61.320 55.000 29.70 15.49 40.78 3.01
607 1741 1.227438 GTAGGGTGTGCGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
611 1745 1.504446 GGTGTGCGTGTGTGTGTTT 59.496 52.632 0.00 0.00 0.00 2.83
657 1791 2.455674 ATGAGCGCTTGTGTCTGTAA 57.544 45.000 13.26 0.00 0.00 2.41
663 1797 2.416547 GCGCTTGTGTCTGTAATGATGT 59.583 45.455 0.00 0.00 0.00 3.06
751 3527 1.071471 CCAACTCACGGCCAGAACT 59.929 57.895 2.24 0.00 0.00 3.01
788 3593 1.075896 AACCAGGGCAAACCGGAAA 60.076 52.632 9.46 0.00 46.96 3.13
1100 4071 3.976169 AGCATCTCTTCTACGAATCAGC 58.024 45.455 0.00 0.00 0.00 4.26
1159 4359 1.250328 TTGTGCTCTGGAAATGCAGG 58.750 50.000 1.97 0.00 37.39 4.85
1464 4673 1.142936 TGGATGCATATGGCTCCAGT 58.857 50.000 0.00 0.00 41.68 4.00
1608 4835 2.258109 GAACCAGACTACCAACCCTCT 58.742 52.381 0.00 0.00 0.00 3.69
1609 4836 1.645710 ACCAGACTACCAACCCTCTG 58.354 55.000 0.00 0.00 0.00 3.35
1610 4837 1.132817 ACCAGACTACCAACCCTCTGT 60.133 52.381 0.00 0.00 0.00 3.41
1625 4859 2.577700 CTCTGTATCGCCTCCTACACT 58.422 52.381 0.00 0.00 0.00 3.55
1668 4902 1.303309 GTGCTCCACCATCTACATGC 58.697 55.000 0.00 0.00 0.00 4.06
1673 4907 0.956633 CCACCATCTACATGCCATGC 59.043 55.000 4.17 0.00 0.00 4.06
1681 4915 0.179076 TACATGCCATGCGAGGACAG 60.179 55.000 4.17 0.00 0.00 3.51
1781 5591 3.119319 TCATGGGGAAGCCAAGTACATA 58.881 45.455 0.00 0.00 0.00 2.29
1782 5592 3.525609 TCATGGGGAAGCCAAGTACATAA 59.474 43.478 0.00 0.00 0.00 1.90
1783 5593 3.644966 TGGGGAAGCCAAGTACATAAG 57.355 47.619 0.00 0.00 0.00 1.73
1784 5594 2.298610 GGGGAAGCCAAGTACATAAGC 58.701 52.381 0.00 0.00 0.00 3.09
1787 5597 1.330829 GAAGCCAAGTACATAAGCGCC 59.669 52.381 2.29 0.00 0.00 6.53
1824 5677 0.979709 TCTGCCATGGAGGAGGACAG 60.980 60.000 18.40 11.41 41.22 3.51
1830 5683 1.625315 CATGGAGGAGGACAGACAACA 59.375 52.381 0.00 0.00 0.00 3.33
1834 5687 0.393077 AGGAGGACAGACAACAACCG 59.607 55.000 0.00 0.00 0.00 4.44
1838 5691 2.590575 ACAGACAACAACCGCCCG 60.591 61.111 0.00 0.00 0.00 6.13
1860 5713 1.627329 TCTGCAGCACTTTGAGGATCT 59.373 47.619 9.47 0.00 34.92 2.75
1867 5720 2.350522 CACTTTGAGGATCTGAACCCG 58.649 52.381 0.00 0.00 34.92 5.28
1871 5724 2.285368 AGGATCTGAACCCGCCCA 60.285 61.111 0.00 0.00 0.00 5.36
1881 5734 3.009115 CCCGCCCAAGGAAGAGGA 61.009 66.667 0.00 0.00 0.00 3.71
1891 5744 1.374758 GGAAGAGGACTGGTGTGCG 60.375 63.158 0.00 0.00 39.62 5.34
1899 5752 0.874607 GACTGGTGTGCGACGTCTTT 60.875 55.000 14.70 0.00 0.00 2.52
1900 5753 0.874607 ACTGGTGTGCGACGTCTTTC 60.875 55.000 14.70 3.25 0.00 2.62
1927 5780 2.294074 GTATACCTTGGCGATGGCAAA 58.706 47.619 7.22 0.00 46.84 3.68
1945 5798 3.242706 GCAAATTTTGTGTTGCCAAGACC 60.243 43.478 10.65 0.00 43.49 3.85
1965 5818 2.426522 CATTGAGGTCGGTGACACATT 58.573 47.619 8.08 0.00 33.68 2.71
1968 5821 1.156736 GAGGTCGGTGACACATTTGG 58.843 55.000 8.08 0.00 33.68 3.28
1969 5822 0.762418 AGGTCGGTGACACATTTGGA 59.238 50.000 8.08 0.00 33.68 3.53
1970 5823 1.351017 AGGTCGGTGACACATTTGGAT 59.649 47.619 8.08 0.00 33.68 3.41
1971 5824 2.159382 GGTCGGTGACACATTTGGATT 58.841 47.619 8.08 0.00 33.68 3.01
1972 5825 2.556622 GGTCGGTGACACATTTGGATTT 59.443 45.455 8.08 0.00 33.68 2.17
1973 5826 3.564511 GTCGGTGACACATTTGGATTTG 58.435 45.455 8.08 0.00 32.09 2.32
1974 5827 2.030363 TCGGTGACACATTTGGATTTGC 60.030 45.455 8.08 0.00 0.00 3.68
1975 5828 2.288091 CGGTGACACATTTGGATTTGCA 60.288 45.455 8.08 0.00 0.00 4.08
1976 5829 3.319755 GGTGACACATTTGGATTTGCAG 58.680 45.455 8.08 0.00 0.00 4.41
2020 5873 1.785321 CGTACAGATTTTGCGCGGT 59.215 52.632 8.83 0.00 0.00 5.68
2087 5940 4.202264 ACTCTTTTGTCAAGGACGTGATCT 60.202 41.667 0.00 0.00 34.95 2.75
2105 5958 5.869888 GTGATCTACTGGGTACTTTGACTTG 59.130 44.000 0.00 0.00 0.00 3.16
2107 5960 2.271944 ACTGGGTACTTTGACTTGGC 57.728 50.000 0.00 0.00 0.00 4.52
2111 5964 2.152016 GGGTACTTTGACTTGGCACTC 58.848 52.381 0.00 0.00 0.00 3.51
2119 5972 2.297701 TGACTTGGCACTCTTGGTTTC 58.702 47.619 0.00 0.00 0.00 2.78
2132 5985 3.749088 TCTTGGTTTCGTTATGCATTCGT 59.251 39.130 3.54 0.00 0.00 3.85
2137 5990 4.323751 GTTTCGTTATGCATTCGTCTGTC 58.676 43.478 3.54 0.00 0.00 3.51
2144 5997 0.036388 GCATTCGTCTGTCCCCTTCA 60.036 55.000 0.00 0.00 0.00 3.02
2146 5999 2.158957 GCATTCGTCTGTCCCCTTCATA 60.159 50.000 0.00 0.00 0.00 2.15
2147 6000 3.722147 CATTCGTCTGTCCCCTTCATAG 58.278 50.000 0.00 0.00 0.00 2.23
2148 6001 2.526888 TCGTCTGTCCCCTTCATAGT 57.473 50.000 0.00 0.00 0.00 2.12
2149 6002 3.657398 TCGTCTGTCCCCTTCATAGTA 57.343 47.619 0.00 0.00 0.00 1.82
2150 6003 3.285484 TCGTCTGTCCCCTTCATAGTAC 58.715 50.000 0.00 0.00 0.00 2.73
2151 6004 3.053842 TCGTCTGTCCCCTTCATAGTACT 60.054 47.826 0.00 0.00 0.00 2.73
2152 6005 3.315749 CGTCTGTCCCCTTCATAGTACTC 59.684 52.174 0.00 0.00 0.00 2.59
2153 6006 3.637694 GTCTGTCCCCTTCATAGTACTCC 59.362 52.174 0.00 0.00 0.00 3.85
2154 6007 2.966516 CTGTCCCCTTCATAGTACTCCC 59.033 54.545 0.00 0.00 0.00 4.30
2155 6008 2.590611 TGTCCCCTTCATAGTACTCCCT 59.409 50.000 0.00 0.00 0.00 4.20
2156 6009 3.232662 GTCCCCTTCATAGTACTCCCTC 58.767 54.545 0.00 0.00 0.00 4.30
2157 6010 3.117054 GTCCCCTTCATAGTACTCCCTCT 60.117 52.174 0.00 0.00 0.00 3.69
2158 6011 3.117093 TCCCCTTCATAGTACTCCCTCTG 60.117 52.174 0.00 0.00 0.00 3.35
2159 6012 3.374318 CCCCTTCATAGTACTCCCTCTGT 60.374 52.174 0.00 0.00 0.00 3.41
2160 6013 4.140994 CCCCTTCATAGTACTCCCTCTGTA 60.141 50.000 0.00 0.00 0.00 2.74
2161 6014 5.455872 CCCTTCATAGTACTCCCTCTGTAA 58.544 45.833 0.00 0.00 0.00 2.41
2162 6015 5.897824 CCCTTCATAGTACTCCCTCTGTAAA 59.102 44.000 0.00 0.00 0.00 2.01
2163 6016 6.183360 CCCTTCATAGTACTCCCTCTGTAAAC 60.183 46.154 0.00 0.00 0.00 2.01
2164 6017 6.608002 CCTTCATAGTACTCCCTCTGTAAACT 59.392 42.308 0.00 0.00 0.00 2.66
2165 6018 7.778853 CCTTCATAGTACTCCCTCTGTAAACTA 59.221 40.741 0.00 0.00 0.00 2.24
2166 6019 9.186837 CTTCATAGTACTCCCTCTGTAAACTAA 57.813 37.037 0.00 0.00 0.00 2.24
2167 6020 9.710818 TTCATAGTACTCCCTCTGTAAACTAAT 57.289 33.333 0.00 0.00 0.00 1.73
2175 6028 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
2176 6029 8.882415 TCCCTCTGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
2177 6030 8.480501 TCCCTCTGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
2178 6031 9.754382 CCCTCTGTAAACTAATATAAAAGCGTA 57.246 33.333 0.00 0.00 0.00 4.42
2249 6102 0.976073 TTCGCCTGTCCCCTTCCTAG 60.976 60.000 0.00 0.00 0.00 3.02
2250 6103 1.686110 CGCCTGTCCCCTTCCTAGT 60.686 63.158 0.00 0.00 0.00 2.57
2251 6104 0.396695 CGCCTGTCCCCTTCCTAGTA 60.397 60.000 0.00 0.00 0.00 1.82
2252 6105 1.121378 GCCTGTCCCCTTCCTAGTAC 58.879 60.000 0.00 0.00 0.00 2.73
2319 6172 2.630580 CTGTCCCCTTCCTAGTAGATGC 59.369 54.545 0.00 0.00 0.00 3.91
2320 6173 1.972075 GTCCCCTTCCTAGTAGATGCC 59.028 57.143 0.00 0.00 0.00 4.40
2321 6174 1.132817 TCCCCTTCCTAGTAGATGCCC 60.133 57.143 0.00 0.00 0.00 5.36
2322 6175 1.414538 CCCCTTCCTAGTAGATGCCCA 60.415 57.143 0.00 0.00 0.00 5.36
2323 6176 1.974236 CCCTTCCTAGTAGATGCCCAG 59.026 57.143 0.00 0.00 0.00 4.45
2324 6177 2.683768 CCTTCCTAGTAGATGCCCAGT 58.316 52.381 0.00 0.00 0.00 4.00
2325 6178 3.438078 CCCTTCCTAGTAGATGCCCAGTA 60.438 52.174 0.00 0.00 0.00 2.74
2326 6179 3.574826 CCTTCCTAGTAGATGCCCAGTAC 59.425 52.174 0.00 0.00 0.00 2.73
2327 6180 4.475345 CTTCCTAGTAGATGCCCAGTACT 58.525 47.826 0.00 0.00 0.00 2.73
2328 6181 3.833732 TCCTAGTAGATGCCCAGTACTG 58.166 50.000 16.34 16.34 0.00 2.74
2329 6182 2.297597 CCTAGTAGATGCCCAGTACTGC 59.702 54.545 17.86 7.82 0.00 4.40
2330 6183 1.866015 AGTAGATGCCCAGTACTGCA 58.134 50.000 17.86 13.68 42.52 4.41
2331 6184 2.187958 AGTAGATGCCCAGTACTGCAA 58.812 47.619 17.86 5.15 41.50 4.08
2332 6185 2.093447 AGTAGATGCCCAGTACTGCAAC 60.093 50.000 17.86 11.83 41.50 4.17
2333 6186 0.035056 AGATGCCCAGTACTGCAACC 60.035 55.000 17.86 9.50 41.50 3.77
2334 6187 1.369091 GATGCCCAGTACTGCAACCG 61.369 60.000 17.86 3.23 41.50 4.44
2335 6188 1.836999 ATGCCCAGTACTGCAACCGA 61.837 55.000 17.86 0.00 41.50 4.69
2336 6189 1.078426 GCCCAGTACTGCAACCGAT 60.078 57.895 17.86 0.00 0.00 4.18
2337 6190 1.369091 GCCCAGTACTGCAACCGATG 61.369 60.000 17.86 1.00 0.00 3.84
2338 6191 0.249120 CCCAGTACTGCAACCGATGA 59.751 55.000 17.86 0.00 0.00 2.92
2339 6192 1.359848 CCAGTACTGCAACCGATGAC 58.640 55.000 17.86 0.00 0.00 3.06
2340 6193 1.359848 CAGTACTGCAACCGATGACC 58.640 55.000 10.54 0.00 0.00 4.02
2341 6194 0.973632 AGTACTGCAACCGATGACCA 59.026 50.000 0.00 0.00 0.00 4.02
2342 6195 1.346395 AGTACTGCAACCGATGACCAA 59.654 47.619 0.00 0.00 0.00 3.67
2343 6196 2.147958 GTACTGCAACCGATGACCAAA 58.852 47.619 0.00 0.00 0.00 3.28
2344 6197 1.238439 ACTGCAACCGATGACCAAAG 58.762 50.000 0.00 0.00 0.00 2.77
2345 6198 1.202758 ACTGCAACCGATGACCAAAGA 60.203 47.619 0.00 0.00 0.00 2.52
2346 6199 1.879380 CTGCAACCGATGACCAAAGAA 59.121 47.619 0.00 0.00 0.00 2.52
2347 6200 2.293122 CTGCAACCGATGACCAAAGAAA 59.707 45.455 0.00 0.00 0.00 2.52
2348 6201 2.034053 TGCAACCGATGACCAAAGAAAC 59.966 45.455 0.00 0.00 0.00 2.78
2349 6202 2.293399 GCAACCGATGACCAAAGAAACT 59.707 45.455 0.00 0.00 0.00 2.66
2350 6203 3.500680 GCAACCGATGACCAAAGAAACTA 59.499 43.478 0.00 0.00 0.00 2.24
2351 6204 4.378459 GCAACCGATGACCAAAGAAACTAG 60.378 45.833 0.00 0.00 0.00 2.57
2352 6205 4.884668 ACCGATGACCAAAGAAACTAGA 57.115 40.909 0.00 0.00 0.00 2.43
2353 6206 5.223449 ACCGATGACCAAAGAAACTAGAA 57.777 39.130 0.00 0.00 0.00 2.10
2354 6207 4.995487 ACCGATGACCAAAGAAACTAGAAC 59.005 41.667 0.00 0.00 0.00 3.01
2355 6208 4.392138 CCGATGACCAAAGAAACTAGAACC 59.608 45.833 0.00 0.00 0.00 3.62
2356 6209 4.091509 CGATGACCAAAGAAACTAGAACCG 59.908 45.833 0.00 0.00 0.00 4.44
2357 6210 3.735591 TGACCAAAGAAACTAGAACCGG 58.264 45.455 0.00 0.00 0.00 5.28
2358 6211 3.135167 TGACCAAAGAAACTAGAACCGGT 59.865 43.478 0.00 0.00 0.00 5.28
2359 6212 3.473625 ACCAAAGAAACTAGAACCGGTG 58.526 45.455 8.52 0.00 0.00 4.94
2360 6213 3.135167 ACCAAAGAAACTAGAACCGGTGA 59.865 43.478 8.52 0.00 0.00 4.02
2361 6214 4.202430 ACCAAAGAAACTAGAACCGGTGAT 60.202 41.667 8.52 1.52 0.00 3.06
2362 6215 4.154195 CCAAAGAAACTAGAACCGGTGATG 59.846 45.833 8.52 1.18 0.00 3.07
2363 6216 4.884668 AAGAAACTAGAACCGGTGATGA 57.115 40.909 8.52 0.00 0.00 2.92
2364 6217 4.884668 AGAAACTAGAACCGGTGATGAA 57.115 40.909 8.52 0.00 0.00 2.57
2365 6218 5.223449 AGAAACTAGAACCGGTGATGAAA 57.777 39.130 8.52 0.00 0.00 2.69
2366 6219 5.617252 AGAAACTAGAACCGGTGATGAAAA 58.383 37.500 8.52 0.00 0.00 2.29
2367 6220 6.059484 AGAAACTAGAACCGGTGATGAAAAA 58.941 36.000 8.52 0.00 0.00 1.94
2387 6240 5.366829 AAAAACTTCAACCTGTATACGGC 57.633 39.130 6.15 0.00 0.00 5.68
2388 6241 2.288961 ACTTCAACCTGTATACGGCG 57.711 50.000 4.80 4.80 0.00 6.46
2389 6242 1.134907 ACTTCAACCTGTATACGGCGG 60.135 52.381 13.24 5.27 0.00 6.13
2390 6243 1.135527 CTTCAACCTGTATACGGCGGA 59.864 52.381 13.24 1.23 0.00 5.54
2391 6244 1.184431 TCAACCTGTATACGGCGGAA 58.816 50.000 13.24 0.00 0.00 4.30
2392 6245 1.135527 TCAACCTGTATACGGCGGAAG 59.864 52.381 13.24 0.00 0.00 3.46
2404 6257 4.732106 CGGAAGCTATGGACGACC 57.268 61.111 0.00 0.00 0.00 4.79
2417 6270 4.139859 TGGACGACCAAGAAAAGTTACA 57.860 40.909 3.49 0.00 43.91 2.41
2418 6271 4.515361 TGGACGACCAAGAAAAGTTACAA 58.485 39.130 3.49 0.00 43.91 2.41
2419 6272 4.333372 TGGACGACCAAGAAAAGTTACAAC 59.667 41.667 3.49 0.00 43.91 3.32
2420 6273 4.260907 GGACGACCAAGAAAAGTTACAACC 60.261 45.833 0.00 0.00 35.97 3.77
2421 6274 3.310501 ACGACCAAGAAAAGTTACAACCG 59.689 43.478 0.00 0.00 0.00 4.44
2422 6275 3.303526 CGACCAAGAAAAGTTACAACCGG 60.304 47.826 0.00 0.00 0.00 5.28
2423 6276 3.623703 ACCAAGAAAAGTTACAACCGGT 58.376 40.909 0.00 0.00 0.00 5.28
2424 6277 3.379057 ACCAAGAAAAGTTACAACCGGTG 59.621 43.478 8.52 4.99 0.00 4.94
2425 6278 3.628487 CCAAGAAAAGTTACAACCGGTGA 59.372 43.478 8.52 0.00 0.00 4.02
2426 6279 4.496840 CCAAGAAAAGTTACAACCGGTGAC 60.497 45.833 8.52 5.11 36.31 3.67
2443 6296 4.959149 GGTGACGATAAAAGCTTCAACTC 58.041 43.478 0.00 0.00 0.00 3.01
2444 6297 4.434330 GGTGACGATAAAAGCTTCAACTCG 60.434 45.833 0.00 9.09 0.00 4.18
2445 6298 4.150098 GTGACGATAAAAGCTTCAACTCGT 59.850 41.667 19.61 19.61 40.21 4.18
2446 6299 4.149922 TGACGATAAAAGCTTCAACTCGTG 59.850 41.667 22.64 4.39 37.92 4.35
2447 6300 4.304110 ACGATAAAAGCTTCAACTCGTGA 58.696 39.130 19.13 0.00 36.61 4.35
2448 6301 4.150098 ACGATAAAAGCTTCAACTCGTGAC 59.850 41.667 19.13 0.00 36.61 3.67
2449 6302 4.629065 GATAAAAGCTTCAACTCGTGACG 58.371 43.478 0.00 0.00 35.39 4.35
2450 6303 2.218953 AAAGCTTCAACTCGTGACGA 57.781 45.000 7.70 7.70 35.39 4.20
2451 6304 2.218953 AAGCTTCAACTCGTGACGAA 57.781 45.000 9.64 0.00 35.39 3.85
2452 6305 2.218953 AGCTTCAACTCGTGACGAAA 57.781 45.000 9.64 0.00 35.39 3.46
2453 6306 2.546778 AGCTTCAACTCGTGACGAAAA 58.453 42.857 9.64 0.63 35.39 2.29
2454 6307 2.933906 AGCTTCAACTCGTGACGAAAAA 59.066 40.909 9.64 0.28 35.39 1.94
2469 6322 2.941210 AAAAAGCTTCATCCGGCGA 58.059 47.368 9.30 0.00 0.00 5.54
2470 6323 1.463674 AAAAAGCTTCATCCGGCGAT 58.536 45.000 9.30 0.00 0.00 4.58
2471 6324 0.734889 AAAAGCTTCATCCGGCGATG 59.265 50.000 9.30 10.70 46.30 3.84
2496 6349 4.985044 AAAGTTTTCGACCATACAGACG 57.015 40.909 0.00 0.00 0.00 4.18
2497 6350 2.955614 AGTTTTCGACCATACAGACGG 58.044 47.619 0.00 0.00 0.00 4.79
2498 6351 2.559668 AGTTTTCGACCATACAGACGGA 59.440 45.455 0.00 0.00 0.00 4.69
2499 6352 3.006110 AGTTTTCGACCATACAGACGGAA 59.994 43.478 0.00 0.00 0.00 4.30
2500 6353 2.933495 TTCGACCATACAGACGGAAG 57.067 50.000 0.00 0.00 0.00 3.46
2501 6354 0.454600 TCGACCATACAGACGGAAGC 59.545 55.000 0.00 0.00 0.00 3.86
2502 6355 0.172578 CGACCATACAGACGGAAGCA 59.827 55.000 0.00 0.00 0.00 3.91
2503 6356 1.403647 CGACCATACAGACGGAAGCAA 60.404 52.381 0.00 0.00 0.00 3.91
2504 6357 2.695359 GACCATACAGACGGAAGCAAA 58.305 47.619 0.00 0.00 0.00 3.68
2505 6358 2.415512 GACCATACAGACGGAAGCAAAC 59.584 50.000 0.00 0.00 0.00 2.93
2506 6359 1.393539 CCATACAGACGGAAGCAAACG 59.606 52.381 0.00 0.00 0.00 3.60
2507 6360 2.333926 CATACAGACGGAAGCAAACGA 58.666 47.619 0.00 0.00 0.00 3.85
2508 6361 1.774639 TACAGACGGAAGCAAACGAC 58.225 50.000 0.00 0.00 0.00 4.34
2509 6362 0.179094 ACAGACGGAAGCAAACGACA 60.179 50.000 0.00 0.00 0.00 4.35
2510 6363 0.934496 CAGACGGAAGCAAACGACAA 59.066 50.000 0.00 0.00 0.00 3.18
2511 6364 1.329292 CAGACGGAAGCAAACGACAAA 59.671 47.619 0.00 0.00 0.00 2.83
2512 6365 1.329599 AGACGGAAGCAAACGACAAAC 59.670 47.619 0.00 0.00 0.00 2.93
2513 6366 1.062880 GACGGAAGCAAACGACAAACA 59.937 47.619 0.00 0.00 0.00 2.83
2514 6367 1.202098 ACGGAAGCAAACGACAAACAC 60.202 47.619 0.00 0.00 0.00 3.32
2515 6368 1.202087 CGGAAGCAAACGACAAACACA 60.202 47.619 0.00 0.00 0.00 3.72
2516 6369 2.729467 CGGAAGCAAACGACAAACACAA 60.729 45.455 0.00 0.00 0.00 3.33
2517 6370 3.246619 GGAAGCAAACGACAAACACAAA 58.753 40.909 0.00 0.00 0.00 2.83
2518 6371 3.862845 GGAAGCAAACGACAAACACAAAT 59.137 39.130 0.00 0.00 0.00 2.32
2519 6372 4.328712 GGAAGCAAACGACAAACACAAATT 59.671 37.500 0.00 0.00 0.00 1.82
2520 6373 4.838665 AGCAAACGACAAACACAAATTG 57.161 36.364 0.00 0.00 0.00 2.32
2521 6374 3.061965 AGCAAACGACAAACACAAATTGC 59.938 39.130 0.00 0.00 41.52 3.56
2522 6375 3.181526 GCAAACGACAAACACAAATTGCA 60.182 39.130 0.00 0.00 41.03 4.08
2523 6376 4.667668 GCAAACGACAAACACAAATTGCAA 60.668 37.500 0.00 0.00 41.03 4.08
2524 6377 4.576106 AACGACAAACACAAATTGCAAC 57.424 36.364 0.00 0.00 0.00 4.17
2525 6378 2.926838 ACGACAAACACAAATTGCAACC 59.073 40.909 0.00 0.00 0.00 3.77
2526 6379 2.035009 CGACAAACACAAATTGCAACCG 60.035 45.455 0.00 0.00 0.00 4.44
2527 6380 2.275318 ACAAACACAAATTGCAACCGG 58.725 42.857 0.00 0.00 0.00 5.28
2528 6381 1.004079 CAAACACAAATTGCAACCGGC 60.004 47.619 0.00 0.00 45.13 6.13
2529 6382 0.463620 AACACAAATTGCAACCGGCT 59.536 45.000 0.00 0.00 45.15 5.52
2530 6383 0.249405 ACACAAATTGCAACCGGCTG 60.249 50.000 0.00 0.00 45.15 4.85
2531 6384 0.249405 CACAAATTGCAACCGGCTGT 60.249 50.000 0.00 0.00 45.15 4.40
2532 6385 0.463620 ACAAATTGCAACCGGCTGTT 59.536 45.000 0.00 0.00 45.15 3.16
2533 6386 1.683917 ACAAATTGCAACCGGCTGTTA 59.316 42.857 0.00 0.00 45.15 2.41
2534 6387 2.058057 CAAATTGCAACCGGCTGTTAC 58.942 47.619 0.00 0.00 45.15 2.50
2535 6388 1.323412 AATTGCAACCGGCTGTTACA 58.677 45.000 0.00 0.00 45.15 2.41
2536 6389 1.323412 ATTGCAACCGGCTGTTACAA 58.677 45.000 0.00 9.43 42.78 2.41
2537 6390 1.103803 TTGCAACCGGCTGTTACAAA 58.896 45.000 6.73 0.00 45.15 2.83
2538 6391 1.103803 TGCAACCGGCTGTTACAAAA 58.896 45.000 6.73 0.00 45.15 2.44
2539 6392 1.066303 TGCAACCGGCTGTTACAAAAG 59.934 47.619 6.73 0.00 45.15 2.27
2540 6393 1.766069 CAACCGGCTGTTACAAAAGC 58.234 50.000 0.00 0.00 34.69 3.51
2541 6394 1.336755 CAACCGGCTGTTACAAAAGCT 59.663 47.619 0.00 0.00 39.46 3.74
2542 6395 2.550606 CAACCGGCTGTTACAAAAGCTA 59.449 45.455 0.00 0.00 39.46 3.32
2543 6396 2.148768 ACCGGCTGTTACAAAAGCTAC 58.851 47.619 0.00 0.00 39.46 3.58
2544 6397 2.147958 CCGGCTGTTACAAAAGCTACA 58.852 47.619 4.21 0.00 39.46 2.74
2545 6398 2.550606 CCGGCTGTTACAAAAGCTACAA 59.449 45.455 4.21 0.00 39.46 2.41
2546 6399 3.551551 CGGCTGTTACAAAAGCTACAAC 58.448 45.455 4.21 0.00 39.46 3.32
2547 6400 3.608474 CGGCTGTTACAAAAGCTACAACC 60.608 47.826 4.21 0.00 39.46 3.77
2548 6401 3.551551 GCTGTTACAAAAGCTACAACCG 58.448 45.455 0.00 0.00 36.47 4.44
2549 6402 3.608474 GCTGTTACAAAAGCTACAACCGG 60.608 47.826 0.00 0.00 36.47 5.28
2550 6403 2.291190 TGTTACAAAAGCTACAACCGGC 59.709 45.455 0.00 0.00 0.00 6.13
2551 6404 2.257691 TACAAAAGCTACAACCGGCA 57.742 45.000 0.00 0.00 0.00 5.69
2552 6405 1.616159 ACAAAAGCTACAACCGGCAT 58.384 45.000 0.00 0.00 0.00 4.40
2553 6406 1.960689 ACAAAAGCTACAACCGGCATT 59.039 42.857 0.00 0.00 0.00 3.56
2554 6407 2.288152 ACAAAAGCTACAACCGGCATTG 60.288 45.455 0.00 1.39 35.34 2.82
2555 6408 1.904287 AAAGCTACAACCGGCATTGA 58.096 45.000 11.48 0.00 33.57 2.57
2556 6409 1.904287 AAGCTACAACCGGCATTGAA 58.096 45.000 11.48 0.00 33.57 2.69
2557 6410 1.904287 AGCTACAACCGGCATTGAAA 58.096 45.000 11.48 0.00 33.57 2.69
2558 6411 2.235016 AGCTACAACCGGCATTGAAAA 58.765 42.857 11.48 0.00 33.57 2.29
2559 6412 2.625790 AGCTACAACCGGCATTGAAAAA 59.374 40.909 11.48 0.00 33.57 1.94
2581 6434 8.940768 AAAAAGCTTCAAAACTTGTATTAGCA 57.059 26.923 0.00 0.00 0.00 3.49
2582 6435 8.579682 AAAAGCTTCAAAACTTGTATTAGCAG 57.420 30.769 0.00 0.00 0.00 4.24
2583 6436 5.703876 AGCTTCAAAACTTGTATTAGCAGC 58.296 37.500 0.00 0.00 0.00 5.25
2584 6437 4.554973 GCTTCAAAACTTGTATTAGCAGCG 59.445 41.667 0.00 0.00 0.00 5.18
2585 6438 5.616866 GCTTCAAAACTTGTATTAGCAGCGA 60.617 40.000 0.00 0.00 0.00 4.93
2586 6439 5.277601 TCAAAACTTGTATTAGCAGCGAC 57.722 39.130 0.00 0.00 0.00 5.19
2587 6440 4.153475 TCAAAACTTGTATTAGCAGCGACC 59.847 41.667 0.00 0.00 0.00 4.79
2588 6441 2.311124 ACTTGTATTAGCAGCGACCC 57.689 50.000 0.00 0.00 0.00 4.46
2589 6442 1.209128 CTTGTATTAGCAGCGACCCG 58.791 55.000 0.00 0.00 0.00 5.28
2601 6454 4.170062 GACCCGCGACGACGATGA 62.170 66.667 8.23 0.00 42.66 2.92
2602 6455 4.471726 ACCCGCGACGACGATGAC 62.472 66.667 8.23 0.00 42.66 3.06
2606 6459 3.598562 GCGACGACGATGACGCTG 61.599 66.667 12.29 3.71 46.60 5.18
2607 6460 2.202311 CGACGACGATGACGCTGT 60.202 61.111 0.00 0.00 43.96 4.40
2608 6461 1.796355 CGACGACGATGACGCTGTT 60.796 57.895 0.00 0.00 43.96 3.16
2609 6462 1.334992 CGACGACGATGACGCTGTTT 61.335 55.000 0.00 0.00 43.96 2.83
2610 6463 0.782384 GACGACGATGACGCTGTTTT 59.218 50.000 0.00 0.00 43.96 2.43
2611 6464 0.506932 ACGACGATGACGCTGTTTTG 59.493 50.000 0.00 0.00 43.96 2.44
2612 6465 0.785708 CGACGATGACGCTGTTTTGC 60.786 55.000 0.00 0.00 43.96 3.68
2613 6466 0.512952 GACGATGACGCTGTTTTGCT 59.487 50.000 0.00 0.00 43.96 3.91
2614 6467 0.235665 ACGATGACGCTGTTTTGCTG 59.764 50.000 0.00 0.00 43.96 4.41
2615 6468 1.061799 CGATGACGCTGTTTTGCTGC 61.062 55.000 0.00 0.00 38.48 5.25
2616 6469 0.040157 GATGACGCTGTTTTGCTGCA 60.040 50.000 0.00 0.00 41.39 4.41
2617 6470 0.385029 ATGACGCTGTTTTGCTGCAA 59.615 45.000 11.69 11.69 41.39 4.08
2618 6471 0.525242 TGACGCTGTTTTGCTGCAAC 60.525 50.000 15.72 6.01 41.39 4.17
2619 6472 1.208642 GACGCTGTTTTGCTGCAACC 61.209 55.000 15.72 9.31 41.39 3.77
2620 6473 1.226916 CGCTGTTTTGCTGCAACCA 60.227 52.632 15.72 13.40 41.39 3.67
2621 6474 0.598158 CGCTGTTTTGCTGCAACCAT 60.598 50.000 15.72 0.00 41.39 3.55
2622 6475 1.335780 CGCTGTTTTGCTGCAACCATA 60.336 47.619 15.72 2.42 41.39 2.74
2623 6476 2.331194 GCTGTTTTGCTGCAACCATAG 58.669 47.619 15.72 12.88 41.05 2.23
2624 6477 2.288395 GCTGTTTTGCTGCAACCATAGT 60.288 45.455 15.72 0.00 41.05 2.12
2625 6478 3.568538 CTGTTTTGCTGCAACCATAGTC 58.431 45.455 15.72 1.79 0.00 2.59
2626 6479 2.031245 TGTTTTGCTGCAACCATAGTCG 60.031 45.455 15.72 0.00 0.00 4.18
2627 6480 2.177394 TTTGCTGCAACCATAGTCGA 57.823 45.000 15.72 0.00 0.00 4.20
2628 6481 2.401583 TTGCTGCAACCATAGTCGAT 57.598 45.000 11.69 0.00 0.00 3.59
2629 6482 2.401583 TGCTGCAACCATAGTCGATT 57.598 45.000 0.00 0.00 0.00 3.34
2630 6483 2.710377 TGCTGCAACCATAGTCGATTT 58.290 42.857 0.00 0.00 0.00 2.17
2631 6484 3.081061 TGCTGCAACCATAGTCGATTTT 58.919 40.909 0.00 0.00 0.00 1.82
2632 6485 3.119884 TGCTGCAACCATAGTCGATTTTG 60.120 43.478 0.00 0.00 0.00 2.44
2633 6486 3.429085 CTGCAACCATAGTCGATTTTGC 58.571 45.455 7.80 7.80 39.80 3.68
2634 6487 3.081061 TGCAACCATAGTCGATTTTGCT 58.919 40.909 13.85 0.00 40.01 3.91
2635 6488 4.257731 TGCAACCATAGTCGATTTTGCTA 58.742 39.130 13.85 0.28 40.01 3.49
2636 6489 4.094294 TGCAACCATAGTCGATTTTGCTAC 59.906 41.667 13.85 0.00 40.01 3.58
2637 6490 4.094294 GCAACCATAGTCGATTTTGCTACA 59.906 41.667 7.55 0.00 37.08 2.74
2638 6491 5.391523 GCAACCATAGTCGATTTTGCTACAA 60.392 40.000 7.55 0.00 37.08 2.41
2639 6492 5.796350 ACCATAGTCGATTTTGCTACAAC 57.204 39.130 0.00 0.00 0.00 3.32
2640 6493 4.634443 ACCATAGTCGATTTTGCTACAACC 59.366 41.667 0.00 0.00 0.00 3.77
2641 6494 4.634004 CCATAGTCGATTTTGCTACAACCA 59.366 41.667 0.00 0.00 0.00 3.67
2642 6495 5.220662 CCATAGTCGATTTTGCTACAACCAG 60.221 44.000 0.00 0.00 0.00 4.00
2643 6496 2.484264 AGTCGATTTTGCTACAACCAGC 59.516 45.455 0.00 0.00 42.15 4.85
2644 6497 1.463056 TCGATTTTGCTACAACCAGCG 59.537 47.619 0.00 0.00 44.88 5.18
2645 6498 1.463056 CGATTTTGCTACAACCAGCGA 59.537 47.619 0.00 0.00 44.88 4.93
2646 6499 2.095853 CGATTTTGCTACAACCAGCGAT 59.904 45.455 0.00 0.00 44.88 4.58
2647 6500 2.987413 TTTTGCTACAACCAGCGATG 57.013 45.000 0.00 0.00 44.88 3.84
2648 6501 1.164411 TTTGCTACAACCAGCGATGG 58.836 50.000 20.26 20.26 44.88 3.51
2649 6502 0.323302 TTGCTACAACCAGCGATGGA 59.677 50.000 29.47 1.89 44.88 3.41
2650 6503 0.323302 TGCTACAACCAGCGATGGAA 59.677 50.000 29.47 7.66 44.88 3.53
2651 6504 1.065491 TGCTACAACCAGCGATGGAAT 60.065 47.619 29.47 12.16 44.88 3.01
2652 6505 2.017049 GCTACAACCAGCGATGGAATT 58.983 47.619 29.47 8.46 0.00 2.17
2653 6506 2.423538 GCTACAACCAGCGATGGAATTT 59.576 45.455 29.47 7.59 0.00 1.82
2654 6507 3.731867 GCTACAACCAGCGATGGAATTTG 60.732 47.826 29.47 22.19 0.00 2.32
2655 6508 2.513753 ACAACCAGCGATGGAATTTGA 58.486 42.857 29.47 0.00 0.00 2.69
2656 6509 3.091545 ACAACCAGCGATGGAATTTGAT 58.908 40.909 29.47 8.51 0.00 2.57
2657 6510 4.269183 ACAACCAGCGATGGAATTTGATA 58.731 39.130 29.47 0.00 0.00 2.15
2658 6511 4.889409 ACAACCAGCGATGGAATTTGATAT 59.111 37.500 29.47 1.96 0.00 1.63
2659 6512 6.061441 ACAACCAGCGATGGAATTTGATATA 58.939 36.000 29.47 0.00 0.00 0.86
2660 6513 6.205464 ACAACCAGCGATGGAATTTGATATAG 59.795 38.462 29.47 0.00 0.00 1.31
2661 6514 4.697352 ACCAGCGATGGAATTTGATATAGC 59.303 41.667 29.47 0.00 0.00 2.97
2662 6515 4.095483 CCAGCGATGGAATTTGATATAGCC 59.905 45.833 16.48 0.00 0.00 3.93
2663 6516 4.696877 CAGCGATGGAATTTGATATAGCCA 59.303 41.667 0.00 0.00 0.00 4.75
2664 6517 5.356190 CAGCGATGGAATTTGATATAGCCAT 59.644 40.000 0.00 0.00 38.73 4.40
2665 6518 5.948162 AGCGATGGAATTTGATATAGCCATT 59.052 36.000 0.00 0.00 36.34 3.16
2666 6519 6.435277 AGCGATGGAATTTGATATAGCCATTT 59.565 34.615 0.00 0.00 36.34 2.32
2667 6520 7.039504 AGCGATGGAATTTGATATAGCCATTTT 60.040 33.333 0.00 0.00 36.34 1.82
2668 6521 7.274250 GCGATGGAATTTGATATAGCCATTTTC 59.726 37.037 0.00 0.00 36.34 2.29
2669 6522 8.298854 CGATGGAATTTGATATAGCCATTTTCA 58.701 33.333 0.00 0.00 36.34 2.69
2670 6523 9.415544 GATGGAATTTGATATAGCCATTTTCAC 57.584 33.333 0.00 0.00 36.34 3.18
2671 6524 8.303780 TGGAATTTGATATAGCCATTTTCACA 57.696 30.769 0.00 0.00 0.00 3.58
2672 6525 8.415553 TGGAATTTGATATAGCCATTTTCACAG 58.584 33.333 0.00 0.00 0.00 3.66
2673 6526 7.383300 GGAATTTGATATAGCCATTTTCACAGC 59.617 37.037 0.00 0.00 0.00 4.40
2674 6527 7.592885 ATTTGATATAGCCATTTTCACAGCT 57.407 32.000 0.00 0.00 39.37 4.24
2675 6528 6.381481 TTGATATAGCCATTTTCACAGCTG 57.619 37.500 13.48 13.48 36.79 4.24
2676 6529 5.439721 TGATATAGCCATTTTCACAGCTGT 58.560 37.500 15.25 15.25 36.79 4.40
2677 6530 5.887598 TGATATAGCCATTTTCACAGCTGTT 59.112 36.000 18.94 0.00 36.79 3.16
2678 6531 2.806608 AGCCATTTTCACAGCTGTTG 57.193 45.000 18.94 12.70 33.41 3.33
2679 6532 2.034124 AGCCATTTTCACAGCTGTTGT 58.966 42.857 18.94 0.00 41.94 3.32
2680 6533 2.431782 AGCCATTTTCACAGCTGTTGTT 59.568 40.909 18.94 0.37 38.16 2.83
2681 6534 2.540931 GCCATTTTCACAGCTGTTGTTG 59.459 45.455 18.94 6.12 38.16 3.33
2682 6535 2.540931 CCATTTTCACAGCTGTTGTTGC 59.459 45.455 18.94 0.00 38.16 4.17
2683 6536 3.450578 CATTTTCACAGCTGTTGTTGCT 58.549 40.909 18.94 0.00 38.16 3.91
2689 6542 1.650912 AGCTGTTGTTGCTGCTTCG 59.349 52.632 0.00 0.00 40.02 3.79
2690 6543 2.012948 GCTGTTGTTGCTGCTTCGC 61.013 57.895 0.00 0.00 0.00 4.70
2691 6544 1.370900 CTGTTGTTGCTGCTTCGCC 60.371 57.895 0.00 0.00 0.00 5.54
2692 6545 2.427410 GTTGTTGCTGCTTCGCCG 60.427 61.111 0.00 0.00 0.00 6.46
2693 6546 2.590291 TTGTTGCTGCTTCGCCGA 60.590 55.556 0.00 0.00 0.00 5.54
2694 6547 2.606961 TTGTTGCTGCTTCGCCGAG 61.607 57.895 0.00 0.00 0.00 4.63
2695 6548 4.451652 GTTGCTGCTTCGCCGAGC 62.452 66.667 0.00 2.27 43.00 5.03
2696 6549 4.687215 TTGCTGCTTCGCCGAGCT 62.687 61.111 0.00 0.00 43.11 4.09
2702 6555 4.069232 CTTCGCCGAGCTCCCACA 62.069 66.667 8.47 0.00 0.00 4.17
2703 6556 4.373116 TTCGCCGAGCTCCCACAC 62.373 66.667 8.47 0.00 0.00 3.82
2712 6565 4.802051 CTCCCACACCCGCCCATG 62.802 72.222 0.00 0.00 0.00 3.66
2716 6569 4.343323 CACACCCGCCCATGACCA 62.343 66.667 0.00 0.00 0.00 4.02
2717 6570 3.338250 ACACCCGCCCATGACCAT 61.338 61.111 0.00 0.00 0.00 3.55
2718 6571 2.044053 CACCCGCCCATGACCATT 60.044 61.111 0.00 0.00 0.00 3.16
2719 6572 2.044053 ACCCGCCCATGACCATTG 60.044 61.111 0.00 0.00 0.00 2.82
2720 6573 2.044053 CCCGCCCATGACCATTGT 60.044 61.111 0.00 0.00 0.00 2.71
2721 6574 2.120909 CCCGCCCATGACCATTGTC 61.121 63.158 0.00 0.00 42.12 3.18
2722 6575 2.472059 CCGCCCATGACCATTGTCG 61.472 63.158 0.00 0.00 44.86 4.35
2723 6576 2.800736 GCCCATGACCATTGTCGC 59.199 61.111 0.00 0.00 44.86 5.19
2724 6577 2.774799 GCCCATGACCATTGTCGCC 61.775 63.158 0.00 0.00 44.86 5.54
2725 6578 2.472059 CCCATGACCATTGTCGCCG 61.472 63.158 0.00 0.00 44.86 6.46
2726 6579 1.745115 CCATGACCATTGTCGCCGT 60.745 57.895 0.00 0.00 44.86 5.68
2727 6580 1.705337 CCATGACCATTGTCGCCGTC 61.705 60.000 0.00 0.00 44.86 4.79
2728 6581 1.449601 ATGACCATTGTCGCCGTCC 60.450 57.895 0.00 0.00 44.86 4.79
2729 6582 2.818274 GACCATTGTCGCCGTCCC 60.818 66.667 0.00 0.00 0.00 4.46
2730 6583 4.752879 ACCATTGTCGCCGTCCCG 62.753 66.667 0.00 0.00 0.00 5.14
2769 6622 2.725008 GGACGAGATCCTGCTCCG 59.275 66.667 0.00 0.00 45.22 4.63
2770 6623 2.026879 GACGAGATCCTGCTCCGC 59.973 66.667 0.00 0.00 0.00 5.54
2771 6624 3.492311 GACGAGATCCTGCTCCGCC 62.492 68.421 0.00 0.00 0.00 6.13
2772 6625 3.222855 CGAGATCCTGCTCCGCCT 61.223 66.667 0.00 0.00 0.00 5.52
2773 6626 2.420890 GAGATCCTGCTCCGCCTG 59.579 66.667 0.00 0.00 0.00 4.85
2774 6627 3.805891 GAGATCCTGCTCCGCCTGC 62.806 68.421 0.00 0.00 0.00 4.85
2775 6628 4.925861 GATCCTGCTCCGCCTGCC 62.926 72.222 0.00 0.00 0.00 4.85
2779 6632 4.790962 CTGCTCCGCCTGCCATGT 62.791 66.667 0.00 0.00 0.00 3.21
2780 6633 4.783621 TGCTCCGCCTGCCATGTC 62.784 66.667 0.00 0.00 0.00 3.06
2782 6635 4.864334 CTCCGCCTGCCATGTCCC 62.864 72.222 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.683365 CCAAGGAAGGGCCCATGTG 60.683 63.158 27.56 13.99 37.37 3.21
48 49 4.318332 TGTTTCTAGCAATGTGGAGTCAG 58.682 43.478 0.00 0.00 0.00 3.51
49 50 4.350368 TGTTTCTAGCAATGTGGAGTCA 57.650 40.909 0.00 0.00 0.00 3.41
71 72 1.581934 CAAGTCTCCTGACACGCAAA 58.418 50.000 0.00 0.00 45.20 3.68
76 77 1.343069 ACTCCCAAGTCTCCTGACAC 58.657 55.000 0.00 0.00 45.20 3.67
83 84 3.753294 TCTTGTGAACTCCCAAGTCTC 57.247 47.619 2.50 0.00 39.25 3.36
99 119 2.444624 CGACGCCACGTGGATCTTG 61.445 63.158 38.30 21.59 41.37 3.02
117 137 3.699134 GACCACGCCCTCCCAATCC 62.699 68.421 0.00 0.00 0.00 3.01
130 150 2.432628 CGAAGACCAGCCGACCAC 60.433 66.667 0.00 0.00 0.00 4.16
138 1270 0.172352 GAGAGCTCCACGAAGACCAG 59.828 60.000 10.93 0.00 0.00 4.00
145 1277 0.605589 TCTTGACGAGAGCTCCACGA 60.606 55.000 28.70 13.44 0.00 4.35
147 1279 1.271102 ACTTCTTGACGAGAGCTCCAC 59.729 52.381 10.93 4.17 35.37 4.02
149 1281 2.734276 AACTTCTTGACGAGAGCTCC 57.266 50.000 10.93 0.68 35.37 4.70
155 1287 3.852536 CCTAGCGTTAACTTCTTGACGAG 59.147 47.826 3.71 0.00 40.82 4.18
158 1290 5.924825 TCTTTCCTAGCGTTAACTTCTTGAC 59.075 40.000 3.71 0.00 0.00 3.18
160 1292 6.969828 ATCTTTCCTAGCGTTAACTTCTTG 57.030 37.500 3.71 2.26 0.00 3.02
166 1299 9.747293 AATAGAAGTATCTTTCCTAGCGTTAAC 57.253 33.333 0.00 0.00 37.10 2.01
259 1392 3.762823 GCGCCCTATACCTAGACTACAAT 59.237 47.826 0.00 0.00 0.00 2.71
262 1395 2.090760 GGCGCCCTATACCTAGACTAC 58.909 57.143 18.11 0.00 0.00 2.73
264 1397 0.481567 TGGCGCCCTATACCTAGACT 59.518 55.000 26.77 0.00 0.00 3.24
279 1412 1.220817 GCAACCAACCAAACATGGCG 61.221 55.000 0.00 0.00 40.51 5.69
288 1421 2.197324 GTGGGGAGCAACCAACCA 59.803 61.111 2.58 0.00 40.24 3.67
289 1422 1.456705 TTGTGGGGAGCAACCAACC 60.457 57.895 2.14 0.00 40.24 3.77
290 1423 1.739667 GTTGTGGGGAGCAACCAAC 59.260 57.895 2.58 0.09 40.24 3.77
291 1424 4.268720 GTTGTGGGGAGCAACCAA 57.731 55.556 2.58 0.00 40.24 3.67
311 1444 9.884465 GTAGCCATGTTCATAGATACAAAATTC 57.116 33.333 2.83 0.00 0.00 2.17
321 1454 9.625747 TTATTGATTTGTAGCCATGTTCATAGA 57.374 29.630 0.00 0.00 0.00 1.98
332 1465 5.576774 GTGCCAACTTTATTGATTTGTAGCC 59.423 40.000 0.00 0.00 0.00 3.93
334 1467 6.607689 TCGTGCCAACTTTATTGATTTGTAG 58.392 36.000 0.00 0.00 0.00 2.74
365 1498 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
424 1558 2.988010 TCAGGAGTAAATGCGAGCAT 57.012 45.000 4.52 4.52 38.46 3.79
443 1577 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
472 1606 6.187682 ACGGAAACATCTTCTCCCATTAAAT 58.812 36.000 0.00 0.00 0.00 1.40
475 1609 4.679639 CGACGGAAACATCTTCTCCCATTA 60.680 45.833 0.00 0.00 0.00 1.90
477 1611 2.418746 CGACGGAAACATCTTCTCCCAT 60.419 50.000 0.00 0.00 0.00 4.00
500 1634 2.827190 ATCGTAGGCGCCTCGTCA 60.827 61.111 36.73 20.23 38.14 4.35
535 1669 1.001633 TCGTAGGCGCCTCTTTCTTTT 59.998 47.619 36.73 8.54 38.14 2.27
537 1671 0.824759 ATCGTAGGCGCCTCTTTCTT 59.175 50.000 36.73 10.36 38.14 2.52
539 1673 1.491505 GCATCGTAGGCGCCTCTTTC 61.492 60.000 36.73 20.22 38.14 2.62
540 1674 1.521681 GCATCGTAGGCGCCTCTTT 60.522 57.895 36.73 12.66 38.14 2.52
541 1675 2.107141 GCATCGTAGGCGCCTCTT 59.893 61.111 36.73 13.13 38.14 2.85
542 1676 3.917760 GGCATCGTAGGCGCCTCT 61.918 66.667 36.73 14.06 41.07 3.69
549 1683 2.028190 CTGAGCCGGCATCGTAGG 59.972 66.667 31.54 7.19 33.95 3.18
550 1684 1.299468 GACTGAGCCGGCATCGTAG 60.299 63.158 31.54 19.87 33.95 3.51
551 1685 1.320344 AAGACTGAGCCGGCATCGTA 61.320 55.000 31.54 8.60 33.95 3.43
552 1686 2.172483 AAAGACTGAGCCGGCATCGT 62.172 55.000 31.54 21.38 33.95 3.73
553 1687 1.424493 GAAAGACTGAGCCGGCATCG 61.424 60.000 31.54 18.04 0.00 3.84
554 1688 1.424493 CGAAAGACTGAGCCGGCATC 61.424 60.000 31.54 22.55 0.00 3.91
558 1692 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
570 1704 1.048724 CCCCTATGAGCACCTCCGAA 61.049 60.000 0.00 0.00 0.00 4.30
607 1741 4.442332 CGCATACACTCACCCCTATAAACA 60.442 45.833 0.00 0.00 0.00 2.83
611 1745 1.616865 GCGCATACACTCACCCCTATA 59.383 52.381 0.30 0.00 0.00 1.31
730 3405 0.400213 TTCTGGCCGTGAGTTGGAAT 59.600 50.000 0.00 0.00 0.00 3.01
732 3407 1.070786 GTTCTGGCCGTGAGTTGGA 59.929 57.895 0.00 0.00 0.00 3.53
733 3408 1.071471 AGTTCTGGCCGTGAGTTGG 59.929 57.895 0.00 0.00 0.00 3.77
735 3410 1.598130 GCAGTTCTGGCCGTGAGTT 60.598 57.895 0.00 0.00 0.00 3.01
773 3577 1.362355 GTGTTTCCGGTTTGCCCTG 59.638 57.895 0.00 0.00 0.00 4.45
788 3593 0.914902 GGAAGGGGGAGCTTAGGTGT 60.915 60.000 0.00 0.00 0.00 4.16
915 3880 8.664798 TGATCAATAATTTGGTGAGACGTTTAG 58.335 33.333 0.00 0.00 33.44 1.85
974 3940 1.883084 CGTCTGCGCCCCAATAGTC 60.883 63.158 4.18 0.00 0.00 2.59
975 3941 1.686325 ATCGTCTGCGCCCCAATAGT 61.686 55.000 4.18 0.00 38.14 2.12
976 3942 0.946221 GATCGTCTGCGCCCCAATAG 60.946 60.000 4.18 0.00 38.14 1.73
1100 4071 4.694233 ACGCTGCTGGCTCACCTG 62.694 66.667 0.00 0.00 39.13 4.00
1116 4087 1.134694 GGCCTTGTTTGCGATCGAC 59.865 57.895 21.57 9.02 0.00 4.20
1230 4433 1.505807 CATGGGCGCGAACAAATCA 59.494 52.632 12.10 0.00 0.00 2.57
1464 4673 1.616865 CAGGAAACGGTGTAGTCCTCA 59.383 52.381 0.00 0.00 38.48 3.86
1608 4835 2.228059 GCTAGTGTAGGAGGCGATACA 58.772 52.381 0.00 0.00 0.00 2.29
1609 4836 2.228059 TGCTAGTGTAGGAGGCGATAC 58.772 52.381 0.00 0.00 0.00 2.24
1610 4837 2.651382 TGCTAGTGTAGGAGGCGATA 57.349 50.000 0.00 0.00 0.00 2.92
1625 4859 2.823154 GTTGGCCTTGTTAACCATGCTA 59.177 45.455 3.32 0.00 32.39 3.49
1673 4907 3.197790 CCAATGCGCCTGTCCTCG 61.198 66.667 4.18 0.00 0.00 4.63
1787 5597 1.294659 GAAAGGTCCAGAGCGCACAG 61.295 60.000 11.47 0.00 0.00 3.66
1824 5677 1.890510 AGAACGGGCGGTTGTTGTC 60.891 57.895 15.58 0.40 39.50 3.18
1834 5687 2.555547 AAAGTGCTGCAGAACGGGC 61.556 57.895 20.43 1.28 0.00 6.13
1838 5691 1.597742 TCCTCAAAGTGCTGCAGAAC 58.402 50.000 20.43 19.10 0.00 3.01
1860 5713 2.124507 CTCTTCCTTGGGCGGGTTCA 62.125 60.000 0.00 0.00 0.00 3.18
1867 5720 1.301293 CCAGTCCTCTTCCTTGGGC 59.699 63.158 0.00 0.00 0.00 5.36
1871 5724 0.398318 GCACACCAGTCCTCTTCCTT 59.602 55.000 0.00 0.00 0.00 3.36
1881 5734 0.874607 GAAAGACGTCGCACACCAGT 60.875 55.000 10.46 0.00 0.00 4.00
1891 5744 4.101235 GGTATACCAGTTCGAAAGACGTC 58.899 47.826 17.44 7.70 38.42 4.34
1899 5752 1.135527 CGCCAAGGTATACCAGTTCGA 59.864 52.381 23.87 0.00 38.89 3.71
1900 5753 1.135527 TCGCCAAGGTATACCAGTTCG 59.864 52.381 23.87 19.12 38.89 3.95
1945 5798 2.099141 ATGTGTCACCGACCTCAATG 57.901 50.000 0.00 0.00 0.00 2.82
1956 5809 3.243839 ACCTGCAAATCCAAATGTGTCAC 60.244 43.478 0.00 0.00 0.00 3.67
1960 5813 3.581755 CTCACCTGCAAATCCAAATGTG 58.418 45.455 0.00 0.00 0.00 3.21
1965 5818 1.425066 ACTCCTCACCTGCAAATCCAA 59.575 47.619 0.00 0.00 0.00 3.53
1968 5821 2.352127 GCAAACTCCTCACCTGCAAATC 60.352 50.000 0.00 0.00 33.19 2.17
1969 5822 1.615392 GCAAACTCCTCACCTGCAAAT 59.385 47.619 0.00 0.00 33.19 2.32
1970 5823 1.032014 GCAAACTCCTCACCTGCAAA 58.968 50.000 0.00 0.00 33.19 3.68
1971 5824 1.165907 CGCAAACTCCTCACCTGCAA 61.166 55.000 0.00 0.00 33.19 4.08
1972 5825 1.597854 CGCAAACTCCTCACCTGCA 60.598 57.895 0.00 0.00 33.19 4.41
1973 5826 2.328099 CCGCAAACTCCTCACCTGC 61.328 63.158 0.00 0.00 0.00 4.85
1974 5827 1.071471 ACCGCAAACTCCTCACCTG 59.929 57.895 0.00 0.00 0.00 4.00
1975 5828 1.071471 CACCGCAAACTCCTCACCT 59.929 57.895 0.00 0.00 0.00 4.00
1976 5829 2.617274 GCACCGCAAACTCCTCACC 61.617 63.158 0.00 0.00 0.00 4.02
2020 5873 1.451927 GCGGAGGCCATTGTCATCA 60.452 57.895 5.01 0.00 0.00 3.07
2087 5940 2.706723 TGCCAAGTCAAAGTACCCAGTA 59.293 45.455 0.00 0.00 0.00 2.74
2105 5958 2.414161 GCATAACGAAACCAAGAGTGCC 60.414 50.000 0.00 0.00 0.00 5.01
2107 5960 4.685169 ATGCATAACGAAACCAAGAGTG 57.315 40.909 0.00 0.00 0.00 3.51
2111 5964 4.078363 ACGAATGCATAACGAAACCAAG 57.922 40.909 25.35 2.70 0.00 3.61
2119 5972 1.593006 GGGACAGACGAATGCATAACG 59.407 52.381 19.63 19.63 0.00 3.18
2132 5985 3.373877 GGGAGTACTATGAAGGGGACAGA 60.374 52.174 0.00 0.00 0.00 3.41
2137 5990 3.235200 CAGAGGGAGTACTATGAAGGGG 58.765 54.545 0.00 0.00 31.54 4.79
2149 6002 9.833917 GCTTTTATATTAGTTTACAGAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
2150 6003 8.979574 CGCTTTTATATTAGTTTACAGAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
2151 6004 8.480501 ACGCTTTTATATTAGTTTACAGAGGGA 58.519 33.333 0.00 0.00 0.00 4.20
2152 6005 8.658499 ACGCTTTTATATTAGTTTACAGAGGG 57.342 34.615 0.00 0.00 0.00 4.30
2170 6023 9.286170 TCATCTAGTAGTGATCTATACGCTTTT 57.714 33.333 0.00 0.00 0.00 2.27
2171 6024 8.723311 GTCATCTAGTAGTGATCTATACGCTTT 58.277 37.037 0.00 0.00 0.00 3.51
2172 6025 7.878644 TGTCATCTAGTAGTGATCTATACGCTT 59.121 37.037 0.00 0.00 0.00 4.68
2173 6026 7.387643 TGTCATCTAGTAGTGATCTATACGCT 58.612 38.462 0.00 0.00 0.00 5.07
2174 6027 7.332430 ACTGTCATCTAGTAGTGATCTATACGC 59.668 40.741 0.00 0.00 0.00 4.42
2175 6028 8.652463 CACTGTCATCTAGTAGTGATCTATACG 58.348 40.741 0.00 0.00 42.28 3.06
2176 6029 9.713713 TCACTGTCATCTAGTAGTGATCTATAC 57.286 37.037 0.00 0.00 43.14 1.47
2184 6037 8.214721 TCTTACATCACTGTCATCTAGTAGTG 57.785 38.462 0.00 0.00 41.34 2.74
2267 6120 7.648142 TGCATAACAAAACCAAGAGTTCTTAG 58.352 34.615 0.00 0.00 37.88 2.18
2319 6172 0.249120 TCATCGGTTGCAGTACTGGG 59.751 55.000 23.95 0.00 0.00 4.45
2320 6173 1.359848 GTCATCGGTTGCAGTACTGG 58.640 55.000 23.95 7.34 0.00 4.00
2321 6174 1.337728 TGGTCATCGGTTGCAGTACTG 60.338 52.381 18.93 18.93 0.00 2.74
2322 6175 0.973632 TGGTCATCGGTTGCAGTACT 59.026 50.000 0.00 0.00 0.00 2.73
2323 6176 1.803334 TTGGTCATCGGTTGCAGTAC 58.197 50.000 0.00 0.00 0.00 2.73
2324 6177 2.037902 TCTTTGGTCATCGGTTGCAGTA 59.962 45.455 0.00 0.00 0.00 2.74
2325 6178 1.202758 TCTTTGGTCATCGGTTGCAGT 60.203 47.619 0.00 0.00 0.00 4.40
2326 6179 1.522668 TCTTTGGTCATCGGTTGCAG 58.477 50.000 0.00 0.00 0.00 4.41
2327 6180 1.974265 TTCTTTGGTCATCGGTTGCA 58.026 45.000 0.00 0.00 0.00 4.08
2328 6181 2.293399 AGTTTCTTTGGTCATCGGTTGC 59.707 45.455 0.00 0.00 0.00 4.17
2329 6182 4.994852 TCTAGTTTCTTTGGTCATCGGTTG 59.005 41.667 0.00 0.00 0.00 3.77
2330 6183 5.223449 TCTAGTTTCTTTGGTCATCGGTT 57.777 39.130 0.00 0.00 0.00 4.44
2331 6184 4.884668 TCTAGTTTCTTTGGTCATCGGT 57.115 40.909 0.00 0.00 0.00 4.69
2332 6185 4.392138 GGTTCTAGTTTCTTTGGTCATCGG 59.608 45.833 0.00 0.00 0.00 4.18
2333 6186 4.091509 CGGTTCTAGTTTCTTTGGTCATCG 59.908 45.833 0.00 0.00 0.00 3.84
2334 6187 4.392138 CCGGTTCTAGTTTCTTTGGTCATC 59.608 45.833 0.00 0.00 0.00 2.92
2335 6188 4.202430 ACCGGTTCTAGTTTCTTTGGTCAT 60.202 41.667 0.00 0.00 0.00 3.06
2336 6189 3.135167 ACCGGTTCTAGTTTCTTTGGTCA 59.865 43.478 0.00 0.00 0.00 4.02
2337 6190 3.497262 CACCGGTTCTAGTTTCTTTGGTC 59.503 47.826 2.97 0.00 0.00 4.02
2338 6191 3.135167 TCACCGGTTCTAGTTTCTTTGGT 59.865 43.478 2.97 0.00 0.00 3.67
2339 6192 3.735591 TCACCGGTTCTAGTTTCTTTGG 58.264 45.455 2.97 0.00 0.00 3.28
2340 6193 4.994852 TCATCACCGGTTCTAGTTTCTTTG 59.005 41.667 2.97 0.00 0.00 2.77
2341 6194 5.223449 TCATCACCGGTTCTAGTTTCTTT 57.777 39.130 2.97 0.00 0.00 2.52
2342 6195 4.884668 TCATCACCGGTTCTAGTTTCTT 57.115 40.909 2.97 0.00 0.00 2.52
2343 6196 4.884668 TTCATCACCGGTTCTAGTTTCT 57.115 40.909 2.97 0.00 0.00 2.52
2344 6197 5.934935 TTTTCATCACCGGTTCTAGTTTC 57.065 39.130 2.97 0.00 0.00 2.78
2365 6218 4.083696 CGCCGTATACAGGTTGAAGTTTTT 60.084 41.667 3.32 0.00 0.00 1.94
2366 6219 3.434299 CGCCGTATACAGGTTGAAGTTTT 59.566 43.478 3.32 0.00 0.00 2.43
2367 6220 2.997986 CGCCGTATACAGGTTGAAGTTT 59.002 45.455 3.32 0.00 0.00 2.66
2368 6221 2.613691 CGCCGTATACAGGTTGAAGTT 58.386 47.619 3.32 0.00 0.00 2.66
2369 6222 1.134907 CCGCCGTATACAGGTTGAAGT 60.135 52.381 3.32 0.00 0.00 3.01
2370 6223 1.135527 TCCGCCGTATACAGGTTGAAG 59.864 52.381 3.32 0.00 0.00 3.02
2371 6224 1.184431 TCCGCCGTATACAGGTTGAA 58.816 50.000 3.32 0.00 0.00 2.69
2372 6225 1.135527 CTTCCGCCGTATACAGGTTGA 59.864 52.381 3.32 4.10 0.00 3.18
2373 6226 1.567504 CTTCCGCCGTATACAGGTTG 58.432 55.000 3.32 3.23 0.00 3.77
2374 6227 0.179092 GCTTCCGCCGTATACAGGTT 60.179 55.000 3.32 0.00 0.00 3.50
2375 6228 1.041447 AGCTTCCGCCGTATACAGGT 61.041 55.000 3.32 0.00 36.60 4.00
2376 6229 0.956633 TAGCTTCCGCCGTATACAGG 59.043 55.000 3.32 6.54 36.60 4.00
2377 6230 2.596452 CATAGCTTCCGCCGTATACAG 58.404 52.381 3.32 0.00 36.60 2.74
2378 6231 1.271379 CCATAGCTTCCGCCGTATACA 59.729 52.381 3.32 0.00 36.60 2.29
2379 6232 1.542915 TCCATAGCTTCCGCCGTATAC 59.457 52.381 0.00 0.00 36.60 1.47
2380 6233 1.542915 GTCCATAGCTTCCGCCGTATA 59.457 52.381 0.00 0.00 36.60 1.47
2381 6234 0.317479 GTCCATAGCTTCCGCCGTAT 59.683 55.000 0.00 0.00 36.60 3.06
2382 6235 1.737816 GTCCATAGCTTCCGCCGTA 59.262 57.895 0.00 0.00 36.60 4.02
2383 6236 2.499685 GTCCATAGCTTCCGCCGT 59.500 61.111 0.00 0.00 36.60 5.68
2384 6237 2.658593 CGTCCATAGCTTCCGCCG 60.659 66.667 0.00 0.00 36.60 6.46
2385 6238 1.591863 GTCGTCCATAGCTTCCGCC 60.592 63.158 0.00 0.00 36.60 6.13
2386 6239 1.591863 GGTCGTCCATAGCTTCCGC 60.592 63.158 0.00 0.00 0.00 5.54
2387 6240 0.174845 TTGGTCGTCCATAGCTTCCG 59.825 55.000 1.21 0.00 43.91 4.30
2388 6241 1.480954 TCTTGGTCGTCCATAGCTTCC 59.519 52.381 1.21 0.00 43.91 3.46
2389 6242 2.961526 TCTTGGTCGTCCATAGCTTC 57.038 50.000 1.21 0.00 43.91 3.86
2390 6243 3.695830 TTTCTTGGTCGTCCATAGCTT 57.304 42.857 1.21 0.00 43.91 3.74
2391 6244 3.008049 ACTTTTCTTGGTCGTCCATAGCT 59.992 43.478 1.21 0.00 43.91 3.32
2392 6245 3.335579 ACTTTTCTTGGTCGTCCATAGC 58.664 45.455 1.21 0.00 43.91 2.97
2393 6246 5.929992 TGTAACTTTTCTTGGTCGTCCATAG 59.070 40.000 1.21 3.69 43.91 2.23
2394 6247 5.856156 TGTAACTTTTCTTGGTCGTCCATA 58.144 37.500 1.21 0.00 43.91 2.74
2395 6248 4.710324 TGTAACTTTTCTTGGTCGTCCAT 58.290 39.130 1.21 0.00 43.91 3.41
2396 6249 4.139859 TGTAACTTTTCTTGGTCGTCCA 57.860 40.909 0.00 0.00 42.66 4.02
2397 6250 4.260907 GGTTGTAACTTTTCTTGGTCGTCC 60.261 45.833 0.00 0.00 0.00 4.79
2398 6251 4.551410 CGGTTGTAACTTTTCTTGGTCGTC 60.551 45.833 0.00 0.00 0.00 4.20
2399 6252 3.310501 CGGTTGTAACTTTTCTTGGTCGT 59.689 43.478 0.00 0.00 0.00 4.34
2400 6253 3.303526 CCGGTTGTAACTTTTCTTGGTCG 60.304 47.826 0.00 0.00 0.00 4.79
2401 6254 3.628942 ACCGGTTGTAACTTTTCTTGGTC 59.371 43.478 0.00 0.00 0.00 4.02
2402 6255 3.379057 CACCGGTTGTAACTTTTCTTGGT 59.621 43.478 2.97 0.00 0.00 3.67
2403 6256 3.628487 TCACCGGTTGTAACTTTTCTTGG 59.372 43.478 2.97 0.00 0.00 3.61
2404 6257 4.594136 GTCACCGGTTGTAACTTTTCTTG 58.406 43.478 2.97 0.00 0.00 3.02
2405 6258 3.310501 CGTCACCGGTTGTAACTTTTCTT 59.689 43.478 2.97 0.00 0.00 2.52
2406 6259 2.867975 CGTCACCGGTTGTAACTTTTCT 59.132 45.455 2.97 0.00 0.00 2.52
2407 6260 2.865551 TCGTCACCGGTTGTAACTTTTC 59.134 45.455 2.97 0.00 33.95 2.29
2408 6261 2.903798 TCGTCACCGGTTGTAACTTTT 58.096 42.857 2.97 0.00 33.95 2.27
2409 6262 2.600470 TCGTCACCGGTTGTAACTTT 57.400 45.000 2.97 0.00 33.95 2.66
2410 6263 2.825861 ATCGTCACCGGTTGTAACTT 57.174 45.000 2.97 0.00 33.95 2.66
2411 6264 3.940209 TTATCGTCACCGGTTGTAACT 57.060 42.857 2.97 0.00 33.95 2.24
2412 6265 4.667415 GCTTTTATCGTCACCGGTTGTAAC 60.667 45.833 2.97 0.00 33.95 2.50
2413 6266 3.432933 GCTTTTATCGTCACCGGTTGTAA 59.567 43.478 2.97 0.00 33.95 2.41
2414 6267 2.995258 GCTTTTATCGTCACCGGTTGTA 59.005 45.455 2.97 0.00 33.95 2.41
2415 6268 1.802365 GCTTTTATCGTCACCGGTTGT 59.198 47.619 2.97 0.00 33.95 3.32
2416 6269 2.073816 AGCTTTTATCGTCACCGGTTG 58.926 47.619 2.97 0.00 33.95 3.77
2417 6270 2.467566 AGCTTTTATCGTCACCGGTT 57.532 45.000 2.97 0.00 33.95 4.44
2418 6271 2.289195 TGAAGCTTTTATCGTCACCGGT 60.289 45.455 0.00 0.00 33.95 5.28
2419 6272 2.343101 TGAAGCTTTTATCGTCACCGG 58.657 47.619 0.00 0.00 33.95 5.28
2420 6273 3.432252 AGTTGAAGCTTTTATCGTCACCG 59.568 43.478 0.00 0.00 0.00 4.94
2421 6274 4.434330 CGAGTTGAAGCTTTTATCGTCACC 60.434 45.833 0.00 0.00 0.00 4.02
2422 6275 4.150098 ACGAGTTGAAGCTTTTATCGTCAC 59.850 41.667 18.28 0.00 37.35 3.67
2423 6276 4.149922 CACGAGTTGAAGCTTTTATCGTCA 59.850 41.667 20.09 2.99 39.65 4.35
2424 6277 4.384846 TCACGAGTTGAAGCTTTTATCGTC 59.615 41.667 20.09 5.94 39.65 4.20
2425 6278 4.150098 GTCACGAGTTGAAGCTTTTATCGT 59.850 41.667 18.28 18.28 42.09 3.73
2426 6279 4.629065 GTCACGAGTTGAAGCTTTTATCG 58.371 43.478 17.32 17.32 35.39 2.92
2427 6280 4.384846 TCGTCACGAGTTGAAGCTTTTATC 59.615 41.667 0.00 0.00 35.39 1.75
2428 6281 4.304110 TCGTCACGAGTTGAAGCTTTTAT 58.696 39.130 0.00 0.00 35.39 1.40
2429 6282 3.708890 TCGTCACGAGTTGAAGCTTTTA 58.291 40.909 0.00 0.00 35.39 1.52
2430 6283 2.546778 TCGTCACGAGTTGAAGCTTTT 58.453 42.857 0.00 0.00 35.39 2.27
2431 6284 2.218953 TCGTCACGAGTTGAAGCTTT 57.781 45.000 0.00 0.00 35.39 3.51
2432 6285 2.218953 TTCGTCACGAGTTGAAGCTT 57.781 45.000 0.00 0.00 37.14 3.74
2433 6286 2.218953 TTTCGTCACGAGTTGAAGCT 57.781 45.000 0.00 0.00 37.14 3.74
2434 6287 3.313274 TTTTTCGTCACGAGTTGAAGC 57.687 42.857 0.00 0.00 37.14 3.86
2451 6304 1.463674 ATCGCCGGATGAAGCTTTTT 58.536 45.000 5.05 0.00 0.00 1.94
2452 6305 3.175133 ATCGCCGGATGAAGCTTTT 57.825 47.368 5.05 0.00 0.00 2.27
2453 6306 4.963878 ATCGCCGGATGAAGCTTT 57.036 50.000 5.05 0.00 0.00 3.51
2473 6326 5.277634 CCGTCTGTATGGTCGAAAACTTTTT 60.278 40.000 0.00 0.00 0.00 1.94
2474 6327 4.212636 CCGTCTGTATGGTCGAAAACTTTT 59.787 41.667 0.00 0.00 0.00 2.27
2475 6328 3.744426 CCGTCTGTATGGTCGAAAACTTT 59.256 43.478 0.00 0.00 0.00 2.66
2476 6329 3.006110 TCCGTCTGTATGGTCGAAAACTT 59.994 43.478 0.00 0.00 33.06 2.66
2477 6330 2.559668 TCCGTCTGTATGGTCGAAAACT 59.440 45.455 0.00 0.00 33.06 2.66
2478 6331 2.950433 TCCGTCTGTATGGTCGAAAAC 58.050 47.619 0.00 0.00 33.06 2.43
2479 6332 3.581755 CTTCCGTCTGTATGGTCGAAAA 58.418 45.455 0.00 0.00 33.06 2.29
2480 6333 2.673043 GCTTCCGTCTGTATGGTCGAAA 60.673 50.000 0.00 0.00 33.06 3.46
2481 6334 1.135199 GCTTCCGTCTGTATGGTCGAA 60.135 52.381 0.00 0.00 33.06 3.71
2482 6335 0.454600 GCTTCCGTCTGTATGGTCGA 59.545 55.000 0.00 0.00 33.06 4.20
2483 6336 0.172578 TGCTTCCGTCTGTATGGTCG 59.827 55.000 0.00 0.00 33.06 4.79
2484 6337 2.380084 TTGCTTCCGTCTGTATGGTC 57.620 50.000 0.00 0.00 33.06 4.02
2485 6338 2.423577 GTTTGCTTCCGTCTGTATGGT 58.576 47.619 0.00 0.00 33.06 3.55
2486 6339 1.393539 CGTTTGCTTCCGTCTGTATGG 59.606 52.381 0.00 0.00 0.00 2.74
2487 6340 2.092211 GTCGTTTGCTTCCGTCTGTATG 59.908 50.000 0.00 0.00 0.00 2.39
2488 6341 2.288579 TGTCGTTTGCTTCCGTCTGTAT 60.289 45.455 0.00 0.00 0.00 2.29
2489 6342 1.067364 TGTCGTTTGCTTCCGTCTGTA 59.933 47.619 0.00 0.00 0.00 2.74
2490 6343 0.179094 TGTCGTTTGCTTCCGTCTGT 60.179 50.000 0.00 0.00 0.00 3.41
2491 6344 0.934496 TTGTCGTTTGCTTCCGTCTG 59.066 50.000 0.00 0.00 0.00 3.51
2492 6345 1.329599 GTTTGTCGTTTGCTTCCGTCT 59.670 47.619 0.00 0.00 0.00 4.18
2493 6346 1.062880 TGTTTGTCGTTTGCTTCCGTC 59.937 47.619 0.00 0.00 0.00 4.79
2494 6347 1.088306 TGTTTGTCGTTTGCTTCCGT 58.912 45.000 0.00 0.00 0.00 4.69
2495 6348 1.202087 TGTGTTTGTCGTTTGCTTCCG 60.202 47.619 0.00 0.00 0.00 4.30
2496 6349 2.553079 TGTGTTTGTCGTTTGCTTCC 57.447 45.000 0.00 0.00 0.00 3.46
2497 6350 5.247340 CAATTTGTGTTTGTCGTTTGCTTC 58.753 37.500 0.00 0.00 0.00 3.86
2498 6351 4.435386 GCAATTTGTGTTTGTCGTTTGCTT 60.435 37.500 0.00 0.00 36.27 3.91
2499 6352 3.061965 GCAATTTGTGTTTGTCGTTTGCT 59.938 39.130 0.00 0.00 36.27 3.91
2500 6353 3.181526 TGCAATTTGTGTTTGTCGTTTGC 60.182 39.130 0.00 0.00 38.85 3.68
2501 6354 4.574527 TGCAATTTGTGTTTGTCGTTTG 57.425 36.364 0.00 0.00 0.00 2.93
2502 6355 4.143009 GGTTGCAATTTGTGTTTGTCGTTT 60.143 37.500 0.59 0.00 0.00 3.60
2503 6356 3.369451 GGTTGCAATTTGTGTTTGTCGTT 59.631 39.130 0.59 0.00 0.00 3.85
2504 6357 2.926838 GGTTGCAATTTGTGTTTGTCGT 59.073 40.909 0.59 0.00 0.00 4.34
2505 6358 2.035009 CGGTTGCAATTTGTGTTTGTCG 60.035 45.455 0.59 0.00 0.00 4.35
2506 6359 2.283884 CCGGTTGCAATTTGTGTTTGTC 59.716 45.455 0.59 0.00 0.00 3.18
2507 6360 2.275318 CCGGTTGCAATTTGTGTTTGT 58.725 42.857 0.59 0.00 0.00 2.83
2508 6361 1.004079 GCCGGTTGCAATTTGTGTTTG 60.004 47.619 0.59 0.00 40.77 2.93
2509 6362 1.134551 AGCCGGTTGCAATTTGTGTTT 60.135 42.857 0.59 0.00 44.83 2.83
2510 6363 0.463620 AGCCGGTTGCAATTTGTGTT 59.536 45.000 0.59 0.00 44.83 3.32
2511 6364 0.249405 CAGCCGGTTGCAATTTGTGT 60.249 50.000 4.99 0.00 44.83 3.72
2512 6365 0.249405 ACAGCCGGTTGCAATTTGTG 60.249 50.000 19.28 0.00 44.83 3.33
2513 6366 0.463620 AACAGCCGGTTGCAATTTGT 59.536 45.000 19.28 0.47 44.83 2.83
2514 6367 2.058057 GTAACAGCCGGTTGCAATTTG 58.942 47.619 19.28 0.00 44.83 2.32
2515 6368 1.683917 TGTAACAGCCGGTTGCAATTT 59.316 42.857 19.28 7.65 46.96 1.82
2516 6369 1.323412 TGTAACAGCCGGTTGCAATT 58.677 45.000 19.28 8.02 46.96 2.32
2517 6370 3.028916 TGTAACAGCCGGTTGCAAT 57.971 47.368 19.28 7.62 46.96 3.56
2518 6371 4.561452 TGTAACAGCCGGTTGCAA 57.439 50.000 19.28 3.39 46.96 4.08
2520 6373 1.766069 CTTTTGTAACAGCCGGTTGC 58.234 50.000 19.28 2.62 40.73 4.17
2521 6374 1.336755 AGCTTTTGTAACAGCCGGTTG 59.663 47.619 17.70 17.70 40.73 3.77
2522 6375 1.687563 AGCTTTTGTAACAGCCGGTT 58.312 45.000 1.90 0.00 43.62 4.44
2523 6376 2.148768 GTAGCTTTTGTAACAGCCGGT 58.851 47.619 1.90 0.00 36.62 5.28
2524 6377 2.147958 TGTAGCTTTTGTAACAGCCGG 58.852 47.619 0.00 0.00 36.62 6.13
2525 6378 3.551551 GTTGTAGCTTTTGTAACAGCCG 58.448 45.455 0.00 0.00 36.62 5.52
2526 6379 3.608474 CGGTTGTAGCTTTTGTAACAGCC 60.608 47.826 7.64 7.64 39.16 4.85
2527 6380 3.551551 CGGTTGTAGCTTTTGTAACAGC 58.448 45.455 0.00 0.00 36.16 4.40
2528 6381 3.608474 GCCGGTTGTAGCTTTTGTAACAG 60.608 47.826 1.90 0.00 0.00 3.16
2529 6382 2.291190 GCCGGTTGTAGCTTTTGTAACA 59.709 45.455 1.90 0.00 0.00 2.41
2530 6383 2.291190 TGCCGGTTGTAGCTTTTGTAAC 59.709 45.455 1.90 0.00 0.00 2.50
2531 6384 2.573369 TGCCGGTTGTAGCTTTTGTAA 58.427 42.857 1.90 0.00 0.00 2.41
2532 6385 2.257691 TGCCGGTTGTAGCTTTTGTA 57.742 45.000 1.90 0.00 0.00 2.41
2533 6386 1.616159 ATGCCGGTTGTAGCTTTTGT 58.384 45.000 1.90 0.00 0.00 2.83
2534 6387 2.030363 TCAATGCCGGTTGTAGCTTTTG 60.030 45.455 1.90 0.00 0.00 2.44
2535 6388 2.235016 TCAATGCCGGTTGTAGCTTTT 58.765 42.857 1.90 0.00 0.00 2.27
2536 6389 1.904287 TCAATGCCGGTTGTAGCTTT 58.096 45.000 1.90 0.00 0.00 3.51
2537 6390 1.904287 TTCAATGCCGGTTGTAGCTT 58.096 45.000 1.90 0.00 0.00 3.74
2538 6391 1.904287 TTTCAATGCCGGTTGTAGCT 58.096 45.000 1.90 0.00 0.00 3.32
2539 6392 2.715737 TTTTCAATGCCGGTTGTAGC 57.284 45.000 1.90 0.00 0.00 3.58
2556 6409 8.940768 TGCTAATACAAGTTTTGAAGCTTTTT 57.059 26.923 0.00 0.00 31.85 1.94
2557 6410 7.169813 GCTGCTAATACAAGTTTTGAAGCTTTT 59.830 33.333 0.00 0.00 31.85 2.27
2558 6411 6.642540 GCTGCTAATACAAGTTTTGAAGCTTT 59.357 34.615 0.00 0.00 31.85 3.51
2559 6412 6.152379 GCTGCTAATACAAGTTTTGAAGCTT 58.848 36.000 0.00 0.00 31.85 3.74
2560 6413 5.617751 CGCTGCTAATACAAGTTTTGAAGCT 60.618 40.000 0.00 0.00 31.85 3.74
2561 6414 4.554973 CGCTGCTAATACAAGTTTTGAAGC 59.445 41.667 0.00 0.00 0.00 3.86
2562 6415 5.790495 GTCGCTGCTAATACAAGTTTTGAAG 59.210 40.000 0.00 0.00 0.00 3.02
2563 6416 5.334569 GGTCGCTGCTAATACAAGTTTTGAA 60.335 40.000 0.00 0.00 0.00 2.69
2564 6417 4.153475 GGTCGCTGCTAATACAAGTTTTGA 59.847 41.667 0.00 0.00 0.00 2.69
2565 6418 4.403453 GGTCGCTGCTAATACAAGTTTTG 58.597 43.478 0.00 0.00 0.00 2.44
2566 6419 3.439129 GGGTCGCTGCTAATACAAGTTTT 59.561 43.478 0.00 0.00 0.00 2.43
2567 6420 3.007635 GGGTCGCTGCTAATACAAGTTT 58.992 45.455 0.00 0.00 0.00 2.66
2568 6421 2.629051 GGGTCGCTGCTAATACAAGTT 58.371 47.619 0.00 0.00 0.00 2.66
2569 6422 1.470979 CGGGTCGCTGCTAATACAAGT 60.471 52.381 0.00 0.00 0.00 3.16
2570 6423 1.209128 CGGGTCGCTGCTAATACAAG 58.791 55.000 0.00 0.00 0.00 3.16
2571 6424 3.355816 CGGGTCGCTGCTAATACAA 57.644 52.632 0.00 0.00 0.00 2.41
2584 6437 4.170062 TCATCGTCGTCGCGGGTC 62.170 66.667 6.13 0.00 36.96 4.46
2585 6438 4.471726 GTCATCGTCGTCGCGGGT 62.472 66.667 6.13 0.00 36.96 5.28
2590 6443 1.334992 AAACAGCGTCATCGTCGTCG 61.335 55.000 0.00 0.00 39.49 5.12
2591 6444 0.782384 AAAACAGCGTCATCGTCGTC 59.218 50.000 0.00 0.00 39.49 4.20
2592 6445 0.506932 CAAAACAGCGTCATCGTCGT 59.493 50.000 0.00 0.00 39.49 4.34
2593 6446 0.785708 GCAAAACAGCGTCATCGTCG 60.786 55.000 0.00 0.00 39.49 5.12
2594 6447 0.512952 AGCAAAACAGCGTCATCGTC 59.487 50.000 0.00 0.00 40.15 4.20
2595 6448 0.235665 CAGCAAAACAGCGTCATCGT 59.764 50.000 0.00 0.00 40.15 3.73
2596 6449 1.061799 GCAGCAAAACAGCGTCATCG 61.062 55.000 0.00 0.00 40.15 3.84
2597 6450 0.040157 TGCAGCAAAACAGCGTCATC 60.040 50.000 0.00 0.00 40.15 2.92
2598 6451 0.385029 TTGCAGCAAAACAGCGTCAT 59.615 45.000 4.99 0.00 40.15 3.06
2599 6452 0.525242 GTTGCAGCAAAACAGCGTCA 60.525 50.000 10.11 0.00 40.15 4.35
2600 6453 1.208642 GGTTGCAGCAAAACAGCGTC 61.209 55.000 10.11 0.00 40.15 5.19
2601 6454 1.226945 GGTTGCAGCAAAACAGCGT 60.227 52.632 10.11 0.00 40.15 5.07
2602 6455 0.598158 ATGGTTGCAGCAAAACAGCG 60.598 50.000 10.11 0.00 40.15 5.18
2603 6456 2.288395 ACTATGGTTGCAGCAAAACAGC 60.288 45.455 10.11 0.00 0.00 4.40
2604 6457 3.568538 GACTATGGTTGCAGCAAAACAG 58.431 45.455 10.11 7.50 0.00 3.16
2605 6458 2.031245 CGACTATGGTTGCAGCAAAACA 60.031 45.455 10.11 12.65 0.00 2.83
2606 6459 2.225491 TCGACTATGGTTGCAGCAAAAC 59.775 45.455 10.11 6.77 0.00 2.43
2607 6460 2.499197 TCGACTATGGTTGCAGCAAAA 58.501 42.857 10.11 1.32 0.00 2.44
2608 6461 2.177394 TCGACTATGGTTGCAGCAAA 57.823 45.000 10.11 0.00 0.00 3.68
2609 6462 2.401583 ATCGACTATGGTTGCAGCAA 57.598 45.000 2.83 2.83 0.00 3.91
2610 6463 2.401583 AATCGACTATGGTTGCAGCA 57.598 45.000 2.05 0.00 0.00 4.41
2611 6464 3.429085 CAAAATCGACTATGGTTGCAGC 58.571 45.455 0.00 0.00 0.00 5.25
2612 6465 3.127548 AGCAAAATCGACTATGGTTGCAG 59.872 43.478 14.77 0.00 39.91 4.41
2613 6466 3.081061 AGCAAAATCGACTATGGTTGCA 58.919 40.909 14.77 0.00 39.91 4.08
2614 6467 3.764885 AGCAAAATCGACTATGGTTGC 57.235 42.857 0.00 0.00 38.68 4.17
2615 6468 5.794687 TGTAGCAAAATCGACTATGGTTG 57.205 39.130 3.64 0.00 0.00 3.77
2616 6469 5.123344 GGTTGTAGCAAAATCGACTATGGTT 59.877 40.000 3.64 0.00 0.00 3.67
2617 6470 4.634443 GGTTGTAGCAAAATCGACTATGGT 59.366 41.667 0.00 0.00 0.00 3.55
2618 6471 4.634004 TGGTTGTAGCAAAATCGACTATGG 59.366 41.667 0.00 0.00 0.00 2.74
2619 6472 5.727791 GCTGGTTGTAGCAAAATCGACTATG 60.728 44.000 0.00 0.00 43.17 2.23
2620 6473 4.332819 GCTGGTTGTAGCAAAATCGACTAT 59.667 41.667 0.00 0.00 43.17 2.12
2621 6474 3.682858 GCTGGTTGTAGCAAAATCGACTA 59.317 43.478 0.00 0.00 43.17 2.59
2622 6475 2.484264 GCTGGTTGTAGCAAAATCGACT 59.516 45.455 0.00 0.00 43.17 4.18
2623 6476 2.724839 CGCTGGTTGTAGCAAAATCGAC 60.725 50.000 0.00 0.00 43.87 4.20
2624 6477 1.463056 CGCTGGTTGTAGCAAAATCGA 59.537 47.619 0.00 0.00 43.87 3.59
2625 6478 1.463056 TCGCTGGTTGTAGCAAAATCG 59.537 47.619 0.00 0.00 43.87 3.34
2626 6479 3.429085 CATCGCTGGTTGTAGCAAAATC 58.571 45.455 0.00 0.00 43.87 2.17
2627 6480 2.164219 CCATCGCTGGTTGTAGCAAAAT 59.836 45.455 0.00 0.00 43.87 1.82
2628 6481 1.539388 CCATCGCTGGTTGTAGCAAAA 59.461 47.619 0.00 0.00 43.87 2.44
2629 6482 1.164411 CCATCGCTGGTTGTAGCAAA 58.836 50.000 0.00 0.00 43.87 3.68
2630 6483 0.323302 TCCATCGCTGGTTGTAGCAA 59.677 50.000 5.00 0.00 43.87 3.91
2631 6484 0.323302 TTCCATCGCTGGTTGTAGCA 59.677 50.000 5.00 0.00 43.87 3.49
2632 6485 1.668419 ATTCCATCGCTGGTTGTAGC 58.332 50.000 5.00 0.00 43.61 3.58
2633 6486 3.689161 TCAAATTCCATCGCTGGTTGTAG 59.311 43.478 5.00 0.00 43.61 2.74
2634 6487 3.680490 TCAAATTCCATCGCTGGTTGTA 58.320 40.909 5.00 0.00 43.61 2.41
2635 6488 2.513753 TCAAATTCCATCGCTGGTTGT 58.486 42.857 5.00 0.00 43.61 3.32
2636 6489 3.788333 ATCAAATTCCATCGCTGGTTG 57.212 42.857 5.00 3.12 43.61 3.77
2637 6490 5.182001 GCTATATCAAATTCCATCGCTGGTT 59.818 40.000 5.00 0.00 43.61 3.67
2638 6491 4.697352 GCTATATCAAATTCCATCGCTGGT 59.303 41.667 5.00 0.00 43.61 4.00
2639 6492 4.095483 GGCTATATCAAATTCCATCGCTGG 59.905 45.833 0.00 0.00 44.64 4.85
2640 6493 4.696877 TGGCTATATCAAATTCCATCGCTG 59.303 41.667 0.00 0.00 0.00 5.18
2641 6494 4.910195 TGGCTATATCAAATTCCATCGCT 58.090 39.130 0.00 0.00 0.00 4.93
2642 6495 5.824904 ATGGCTATATCAAATTCCATCGC 57.175 39.130 0.00 0.00 28.98 4.58
2643 6496 8.298854 TGAAAATGGCTATATCAAATTCCATCG 58.701 33.333 0.00 0.00 33.58 3.84
2644 6497 9.415544 GTGAAAATGGCTATATCAAATTCCATC 57.584 33.333 0.85 0.00 33.58 3.51
2645 6498 8.926374 TGTGAAAATGGCTATATCAAATTCCAT 58.074 29.630 0.85 0.00 35.99 3.41
2646 6499 8.303780 TGTGAAAATGGCTATATCAAATTCCA 57.696 30.769 0.85 0.00 0.00 3.53
2647 6500 7.383300 GCTGTGAAAATGGCTATATCAAATTCC 59.617 37.037 0.85 0.00 0.00 3.01
2648 6501 8.139989 AGCTGTGAAAATGGCTATATCAAATTC 58.860 33.333 0.85 0.00 32.94 2.17
2649 6502 7.924412 CAGCTGTGAAAATGGCTATATCAAATT 59.076 33.333 5.25 0.00 33.43 1.82
2650 6503 7.069085 ACAGCTGTGAAAATGGCTATATCAAAT 59.931 33.333 20.97 0.00 33.43 2.32
2651 6504 6.377996 ACAGCTGTGAAAATGGCTATATCAAA 59.622 34.615 20.97 0.00 33.43 2.69
2652 6505 5.887598 ACAGCTGTGAAAATGGCTATATCAA 59.112 36.000 20.97 0.00 33.43 2.57
2653 6506 5.439721 ACAGCTGTGAAAATGGCTATATCA 58.560 37.500 20.97 0.00 33.43 2.15
2654 6507 6.183360 ACAACAGCTGTGAAAATGGCTATATC 60.183 38.462 22.49 0.00 36.69 1.63
2655 6508 5.653769 ACAACAGCTGTGAAAATGGCTATAT 59.346 36.000 22.49 0.00 36.69 0.86
2656 6509 5.009631 ACAACAGCTGTGAAAATGGCTATA 58.990 37.500 22.49 0.00 36.69 1.31
2657 6510 3.828451 ACAACAGCTGTGAAAATGGCTAT 59.172 39.130 22.49 0.00 36.69 2.97
2658 6511 3.221771 ACAACAGCTGTGAAAATGGCTA 58.778 40.909 22.49 0.00 36.69 3.93
2659 6512 2.034124 ACAACAGCTGTGAAAATGGCT 58.966 42.857 22.49 0.00 36.69 4.75
2660 6513 2.514205 ACAACAGCTGTGAAAATGGC 57.486 45.000 22.49 0.00 36.69 4.40
2661 6514 2.540931 GCAACAACAGCTGTGAAAATGG 59.459 45.455 22.49 7.85 38.67 3.16
2662 6515 3.450578 AGCAACAACAGCTGTGAAAATG 58.549 40.909 22.49 16.86 41.61 2.32
2663 6516 3.806625 AGCAACAACAGCTGTGAAAAT 57.193 38.095 22.49 0.00 41.61 1.82
2671 6524 1.650912 CGAAGCAGCAACAACAGCT 59.349 52.632 0.00 0.00 44.62 4.24
2672 6525 4.216963 CGAAGCAGCAACAACAGC 57.783 55.556 0.00 0.00 0.00 4.40
2685 6538 4.069232 TGTGGGAGCTCGGCGAAG 62.069 66.667 12.13 6.52 0.00 3.79
2686 6539 4.373116 GTGTGGGAGCTCGGCGAA 62.373 66.667 12.13 0.00 0.00 4.70
2695 6548 4.802051 CATGGGCGGGTGTGGGAG 62.802 72.222 0.00 0.00 0.00 4.30
2699 6552 3.643595 ATGGTCATGGGCGGGTGTG 62.644 63.158 0.00 0.00 0.00 3.82
2700 6553 2.917897 AATGGTCATGGGCGGGTGT 61.918 57.895 0.00 0.00 0.00 4.16
2701 6554 2.044053 AATGGTCATGGGCGGGTG 60.044 61.111 0.00 0.00 0.00 4.61
2702 6555 2.044053 CAATGGTCATGGGCGGGT 60.044 61.111 0.00 0.00 0.00 5.28
2703 6556 2.044053 ACAATGGTCATGGGCGGG 60.044 61.111 0.00 0.00 0.00 6.13
2704 6557 2.472059 CGACAATGGTCATGGGCGG 61.472 63.158 5.71 0.00 44.54 6.13
2705 6558 3.101209 CGACAATGGTCATGGGCG 58.899 61.111 0.13 0.00 44.54 6.13
2706 6559 2.774799 GGCGACAATGGTCATGGGC 61.775 63.158 0.13 0.00 44.54 5.36
2707 6560 2.472059 CGGCGACAATGGTCATGGG 61.472 63.158 0.00 0.00 44.54 4.00
2708 6561 1.705337 GACGGCGACAATGGTCATGG 61.705 60.000 16.62 0.00 44.54 3.66
2709 6562 1.705337 GGACGGCGACAATGGTCATG 61.705 60.000 16.62 0.00 44.54 3.07
2710 6563 1.449601 GGACGGCGACAATGGTCAT 60.450 57.895 16.62 0.00 44.54 3.06
2711 6564 2.047655 GGACGGCGACAATGGTCA 60.048 61.111 16.62 0.00 44.54 4.02
2712 6565 2.818274 GGGACGGCGACAATGGTC 60.818 66.667 16.62 0.00 40.77 4.02
2737 6590 1.133458 GTCCACTACGTCGTCGGAC 59.867 63.158 19.66 19.66 41.85 4.79
2738 6591 2.382746 CGTCCACTACGTCGTCGGA 61.383 63.158 0.00 3.93 46.72 4.55
2739 6592 2.097160 CGTCCACTACGTCGTCGG 59.903 66.667 0.00 1.18 46.72 4.79
2765 6618 4.864334 GGGACATGGCAGGCGGAG 62.864 72.222 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.