Multiple sequence alignment - TraesCS7D01G356600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G356600 chr7D 100.000 4078 0 0 1 4078 459802813 459798736 0.000000e+00 7531.0
1 TraesCS7D01G356600 chr7B 97.577 3260 75 2 823 4078 482090274 482087015 0.000000e+00 5579.0
2 TraesCS7D01G356600 chr7B 92.428 383 28 1 1 383 482171121 482170740 2.770000e-151 545.0
3 TraesCS7D01G356600 chr7B 93.902 328 14 2 381 708 482091106 482090785 1.320000e-134 490.0
4 TraesCS7D01G356600 chr7B 87.654 81 8 1 718 798 482090420 482090342 4.340000e-15 93.5
5 TraesCS7D01G356600 chr7A 97.346 2675 68 3 822 3495 539712266 539714938 0.000000e+00 4543.0
6 TraesCS7D01G356600 chr7A 98.136 590 8 1 3484 4073 539715124 539715710 0.000000e+00 1026.0
7 TraesCS7D01G356600 chr7A 84.848 297 28 5 1 295 539657058 539657339 2.400000e-72 283.0
8 TraesCS7D01G356600 chr6A 85.841 452 53 4 2132 2582 300213760 300213319 1.720000e-128 470.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G356600 chr7D 459798736 459802813 4077 True 7531.000000 7531 100.000000 1 4078 1 chr7D.!!$R1 4077
1 TraesCS7D01G356600 chr7B 482087015 482091106 4091 True 2054.166667 5579 93.044333 381 4078 3 chr7B.!!$R2 3697
2 TraesCS7D01G356600 chr7A 539712266 539715710 3444 False 2784.500000 4543 97.741000 822 4073 2 chr7A.!!$F2 3251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.031515 ACCATCCTCATCCCGTGGTA 60.032 55.0 0.0 0.0 41.15 3.25 F
354 355 0.107214 CCCGTGGTAGTGATTGGCAT 60.107 55.0 0.0 0.0 0.00 4.40 F
605 606 0.321122 CAGCCGCTTCACCTTCTTCT 60.321 55.0 0.0 0.0 0.00 2.85 F
711 712 0.324943 ACAATGTTACCTCGGCAGCT 59.675 50.0 0.0 0.0 0.00 4.24 F
757 1113 0.529555 GGAGGCGACATCAAGCTCTC 60.530 60.0 0.0 0.0 33.20 3.20 F
2121 2523 0.798776 CCCGCTCAACACACTCATTC 59.201 55.0 0.0 0.0 0.00 2.67 F
2526 2928 1.518056 CTGAGCACAATGCCACGGTT 61.518 55.0 0.0 0.0 46.52 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1893 0.039180 TGTAAGGCACGGAGGAGAGA 59.961 55.000 0.00 0.0 0.00 3.10 R
2160 2562 0.888619 TGGAGTCCAAGTACTCGCTG 59.111 55.000 10.20 0.0 45.69 5.18 R
2553 2955 1.178534 AGAACGGCCCAAATGGTGTG 61.179 55.000 0.00 0.0 36.04 3.82 R
2868 3270 2.633967 CAGCTCCTGAGAAGCCTGATAT 59.366 50.000 0.00 0.0 32.44 1.63 R
2952 3354 7.081349 CCAAAAAGAAACCAAAAACAAAGACC 58.919 34.615 0.00 0.0 0.00 3.85 R
3064 3466 0.179062 ATCGCATCAGGGTGAAGCTC 60.179 55.000 2.99 0.0 38.78 4.09 R
3894 4493 1.203001 ACACCCCGTTTTGACCATCAT 60.203 47.619 0.00 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.533569 ACCGATATTAAGGTTTCATTTGGATT 57.466 30.769 0.00 0.00 37.49 3.01
26 27 9.635404 ACCGATATTAAGGTTTCATTTGGATTA 57.365 29.630 0.00 0.00 37.49 1.75
27 28 9.893305 CCGATATTAAGGTTTCATTTGGATTAC 57.107 33.333 0.00 0.00 0.00 1.89
36 37 9.710900 AGGTTTCATTTGGATTACAAGATTTTC 57.289 29.630 0.00 0.00 40.82 2.29
37 38 8.647226 GGTTTCATTTGGATTACAAGATTTTCG 58.353 33.333 0.00 0.00 40.82 3.46
38 39 9.191995 GTTTCATTTGGATTACAAGATTTTCGT 57.808 29.630 0.00 0.00 40.82 3.85
41 42 8.673711 TCATTTGGATTACAAGATTTTCGTAGG 58.326 33.333 0.00 0.00 40.82 3.18
42 43 8.673711 CATTTGGATTACAAGATTTTCGTAGGA 58.326 33.333 0.00 0.00 40.82 2.94
43 44 7.605410 TTGGATTACAAGATTTTCGTAGGAC 57.395 36.000 0.00 0.00 33.18 3.85
44 45 6.110707 TGGATTACAAGATTTTCGTAGGACC 58.889 40.000 0.00 0.00 0.00 4.46
45 46 6.070424 TGGATTACAAGATTTTCGTAGGACCT 60.070 38.462 0.00 0.00 0.00 3.85
46 47 6.479331 GGATTACAAGATTTTCGTAGGACCTC 59.521 42.308 0.00 0.00 0.00 3.85
47 48 6.600882 TTACAAGATTTTCGTAGGACCTCT 57.399 37.500 0.00 0.00 0.00 3.69
48 49 7.707624 TTACAAGATTTTCGTAGGACCTCTA 57.292 36.000 0.00 0.00 0.00 2.43
49 50 5.963594 ACAAGATTTTCGTAGGACCTCTAC 58.036 41.667 0.00 0.00 43.68 2.59
50 51 5.105432 ACAAGATTTTCGTAGGACCTCTACC 60.105 44.000 0.00 0.00 44.13 3.18
51 52 4.869451 AGATTTTCGTAGGACCTCTACCT 58.131 43.478 0.00 0.00 44.13 3.08
52 53 5.270794 AGATTTTCGTAGGACCTCTACCTT 58.729 41.667 0.00 0.00 44.13 3.50
53 54 6.430007 AGATTTTCGTAGGACCTCTACCTTA 58.570 40.000 0.00 0.00 44.13 2.69
54 55 7.068061 AGATTTTCGTAGGACCTCTACCTTAT 58.932 38.462 0.00 0.00 44.13 1.73
55 56 6.705863 TTTTCGTAGGACCTCTACCTTATC 57.294 41.667 0.00 0.00 44.13 1.75
56 57 5.378230 TTCGTAGGACCTCTACCTTATCA 57.622 43.478 0.00 0.00 44.13 2.15
57 58 4.970711 TCGTAGGACCTCTACCTTATCAG 58.029 47.826 0.00 0.00 44.13 2.90
58 59 4.657504 TCGTAGGACCTCTACCTTATCAGA 59.342 45.833 0.00 0.00 44.13 3.27
59 60 4.756135 CGTAGGACCTCTACCTTATCAGAC 59.244 50.000 0.00 0.00 44.13 3.51
60 61 5.455040 CGTAGGACCTCTACCTTATCAGACT 60.455 48.000 0.00 0.00 44.13 3.24
61 62 5.056553 AGGACCTCTACCTTATCAGACTC 57.943 47.826 0.00 0.00 33.55 3.36
62 63 3.816523 GGACCTCTACCTTATCAGACTCG 59.183 52.174 0.00 0.00 0.00 4.18
63 64 4.453751 GACCTCTACCTTATCAGACTCGT 58.546 47.826 0.00 0.00 0.00 4.18
64 65 4.857679 ACCTCTACCTTATCAGACTCGTT 58.142 43.478 0.00 0.00 0.00 3.85
65 66 5.262804 ACCTCTACCTTATCAGACTCGTTT 58.737 41.667 0.00 0.00 0.00 3.60
66 67 5.125739 ACCTCTACCTTATCAGACTCGTTTG 59.874 44.000 0.00 0.00 0.00 2.93
67 68 5.450688 CCTCTACCTTATCAGACTCGTTTGG 60.451 48.000 0.00 0.00 0.00 3.28
68 69 5.258841 TCTACCTTATCAGACTCGTTTGGA 58.741 41.667 0.00 0.00 0.00 3.53
69 70 5.892119 TCTACCTTATCAGACTCGTTTGGAT 59.108 40.000 0.00 0.00 0.00 3.41
70 71 5.012328 ACCTTATCAGACTCGTTTGGATC 57.988 43.478 0.00 0.00 0.00 3.36
71 72 4.466370 ACCTTATCAGACTCGTTTGGATCA 59.534 41.667 0.00 0.00 0.00 2.92
72 73 4.806247 CCTTATCAGACTCGTTTGGATCAC 59.194 45.833 0.00 0.00 0.00 3.06
73 74 3.961480 ATCAGACTCGTTTGGATCACA 57.039 42.857 0.00 0.00 0.00 3.58
74 75 3.961480 TCAGACTCGTTTGGATCACAT 57.039 42.857 0.00 0.00 0.00 3.21
75 76 5.598416 ATCAGACTCGTTTGGATCACATA 57.402 39.130 0.00 0.00 0.00 2.29
76 77 5.598416 TCAGACTCGTTTGGATCACATAT 57.402 39.130 0.00 0.00 0.00 1.78
77 78 5.977635 TCAGACTCGTTTGGATCACATATT 58.022 37.500 0.00 0.00 0.00 1.28
78 79 6.042777 TCAGACTCGTTTGGATCACATATTC 58.957 40.000 0.00 0.00 0.00 1.75
79 80 5.812127 CAGACTCGTTTGGATCACATATTCA 59.188 40.000 0.00 0.00 0.00 2.57
80 81 5.812642 AGACTCGTTTGGATCACATATTCAC 59.187 40.000 0.00 0.00 0.00 3.18
81 82 5.487433 ACTCGTTTGGATCACATATTCACA 58.513 37.500 0.00 0.00 0.00 3.58
82 83 6.115446 ACTCGTTTGGATCACATATTCACAT 58.885 36.000 0.00 0.00 0.00 3.21
83 84 6.037500 ACTCGTTTGGATCACATATTCACATG 59.962 38.462 0.00 0.00 0.00 3.21
84 85 5.296531 TCGTTTGGATCACATATTCACATGG 59.703 40.000 0.00 0.00 0.00 3.66
85 86 5.066375 CGTTTGGATCACATATTCACATGGT 59.934 40.000 0.00 0.00 0.00 3.55
86 87 6.498304 GTTTGGATCACATATTCACATGGTC 58.502 40.000 0.00 0.00 0.00 4.02
87 88 4.379652 TGGATCACATATTCACATGGTCG 58.620 43.478 0.00 0.00 0.00 4.79
88 89 4.141733 TGGATCACATATTCACATGGTCGT 60.142 41.667 0.00 0.00 0.00 4.34
89 90 4.816385 GGATCACATATTCACATGGTCGTT 59.184 41.667 0.00 0.00 0.00 3.85
90 91 5.277490 GGATCACATATTCACATGGTCGTTG 60.277 44.000 0.00 0.00 0.00 4.10
91 92 4.574892 TCACATATTCACATGGTCGTTGT 58.425 39.130 0.00 0.00 0.00 3.32
92 93 5.000591 TCACATATTCACATGGTCGTTGTT 58.999 37.500 0.00 0.00 0.00 2.83
93 94 5.088068 CACATATTCACATGGTCGTTGTTG 58.912 41.667 0.00 0.00 0.00 3.33
94 95 5.000591 ACATATTCACATGGTCGTTGTTGA 58.999 37.500 0.00 0.00 0.00 3.18
95 96 5.647658 ACATATTCACATGGTCGTTGTTGAT 59.352 36.000 0.00 0.00 0.00 2.57
96 97 6.821160 ACATATTCACATGGTCGTTGTTGATA 59.179 34.615 0.00 0.00 0.00 2.15
97 98 7.335673 ACATATTCACATGGTCGTTGTTGATAA 59.664 33.333 0.00 0.00 0.00 1.75
98 99 5.605564 TTCACATGGTCGTTGTTGATAAG 57.394 39.130 0.00 0.00 0.00 1.73
99 100 3.435327 TCACATGGTCGTTGTTGATAAGC 59.565 43.478 0.00 0.00 0.00 3.09
100 101 2.747446 ACATGGTCGTTGTTGATAAGCC 59.253 45.455 0.00 0.00 0.00 4.35
101 102 2.851263 TGGTCGTTGTTGATAAGCCT 57.149 45.000 0.00 0.00 0.00 4.58
102 103 2.695359 TGGTCGTTGTTGATAAGCCTC 58.305 47.619 0.00 0.00 0.00 4.70
103 104 2.007608 GGTCGTTGTTGATAAGCCTCC 58.992 52.381 0.00 0.00 0.00 4.30
104 105 2.614481 GGTCGTTGTTGATAAGCCTCCA 60.614 50.000 0.00 0.00 0.00 3.86
105 106 3.270877 GTCGTTGTTGATAAGCCTCCAT 58.729 45.455 0.00 0.00 0.00 3.41
106 107 4.439057 GTCGTTGTTGATAAGCCTCCATA 58.561 43.478 0.00 0.00 0.00 2.74
107 108 4.270325 GTCGTTGTTGATAAGCCTCCATAC 59.730 45.833 0.00 0.00 0.00 2.39
108 109 4.161565 TCGTTGTTGATAAGCCTCCATACT 59.838 41.667 0.00 0.00 0.00 2.12
109 110 4.876107 CGTTGTTGATAAGCCTCCATACTT 59.124 41.667 0.00 0.00 0.00 2.24
110 111 6.046593 CGTTGTTGATAAGCCTCCATACTTA 58.953 40.000 0.00 0.00 33.17 2.24
111 112 6.706270 CGTTGTTGATAAGCCTCCATACTTAT 59.294 38.462 0.00 0.00 40.82 1.73
112 113 7.226720 CGTTGTTGATAAGCCTCCATACTTATT 59.773 37.037 0.00 0.00 38.80 1.40
113 114 8.345565 GTTGTTGATAAGCCTCCATACTTATTG 58.654 37.037 0.00 0.00 38.80 1.90
114 115 6.486657 TGTTGATAAGCCTCCATACTTATTGC 59.513 38.462 0.00 0.00 38.80 3.56
115 116 6.439636 TGATAAGCCTCCATACTTATTGCT 57.560 37.500 0.00 0.00 38.80 3.91
116 117 6.841601 TGATAAGCCTCCATACTTATTGCTT 58.158 36.000 0.00 0.00 38.80 3.91
117 118 6.936900 TGATAAGCCTCCATACTTATTGCTTC 59.063 38.462 0.00 0.00 38.80 3.86
118 119 5.379706 AAGCCTCCATACTTATTGCTTCT 57.620 39.130 0.00 0.00 32.53 2.85
119 120 5.379706 AGCCTCCATACTTATTGCTTCTT 57.620 39.130 0.00 0.00 0.00 2.52
120 121 5.128919 AGCCTCCATACTTATTGCTTCTTG 58.871 41.667 0.00 0.00 0.00 3.02
121 122 4.884164 GCCTCCATACTTATTGCTTCTTGT 59.116 41.667 0.00 0.00 0.00 3.16
122 123 5.358160 GCCTCCATACTTATTGCTTCTTGTT 59.642 40.000 0.00 0.00 0.00 2.83
123 124 6.458888 GCCTCCATACTTATTGCTTCTTGTTC 60.459 42.308 0.00 0.00 0.00 3.18
124 125 6.825721 CCTCCATACTTATTGCTTCTTGTTCT 59.174 38.462 0.00 0.00 0.00 3.01
125 126 7.201679 CCTCCATACTTATTGCTTCTTGTTCTG 60.202 40.741 0.00 0.00 0.00 3.02
126 127 7.168219 TCCATACTTATTGCTTCTTGTTCTGT 58.832 34.615 0.00 0.00 0.00 3.41
127 128 8.318412 TCCATACTTATTGCTTCTTGTTCTGTA 58.682 33.333 0.00 0.00 0.00 2.74
128 129 8.607459 CCATACTTATTGCTTCTTGTTCTGTAG 58.393 37.037 0.00 0.00 0.00 2.74
129 130 9.371136 CATACTTATTGCTTCTTGTTCTGTAGA 57.629 33.333 0.00 0.00 0.00 2.59
130 131 9.944376 ATACTTATTGCTTCTTGTTCTGTAGAA 57.056 29.630 0.00 0.00 0.00 2.10
131 132 8.316640 ACTTATTGCTTCTTGTTCTGTAGAAG 57.683 34.615 0.00 0.00 46.45 2.85
132 133 7.934120 ACTTATTGCTTCTTGTTCTGTAGAAGT 59.066 33.333 12.01 0.00 45.79 3.01
133 134 8.677148 TTATTGCTTCTTGTTCTGTAGAAGTT 57.323 30.769 12.01 3.01 45.79 2.66
134 135 7.573968 ATTGCTTCTTGTTCTGTAGAAGTTT 57.426 32.000 12.01 0.00 45.79 2.66
135 136 6.604735 TGCTTCTTGTTCTGTAGAAGTTTC 57.395 37.500 12.01 0.00 45.79 2.78
136 137 6.112734 TGCTTCTTGTTCTGTAGAAGTTTCA 58.887 36.000 12.01 1.69 45.79 2.69
137 138 6.258727 TGCTTCTTGTTCTGTAGAAGTTTCAG 59.741 38.462 12.01 0.00 45.79 3.02
138 139 6.258947 GCTTCTTGTTCTGTAGAAGTTTCAGT 59.741 38.462 12.01 0.00 45.79 3.41
139 140 7.438459 GCTTCTTGTTCTGTAGAAGTTTCAGTA 59.562 37.037 12.01 0.00 45.79 2.74
140 141 9.482627 CTTCTTGTTCTGTAGAAGTTTCAGTAT 57.517 33.333 0.00 0.00 41.44 2.12
141 142 9.477484 TTCTTGTTCTGTAGAAGTTTCAGTATC 57.523 33.333 0.00 0.00 34.27 2.24
142 143 8.638873 TCTTGTTCTGTAGAAGTTTCAGTATCA 58.361 33.333 0.00 0.00 34.27 2.15
143 144 9.429359 CTTGTTCTGTAGAAGTTTCAGTATCAT 57.571 33.333 0.00 0.00 34.27 2.45
144 145 9.778741 TTGTTCTGTAGAAGTTTCAGTATCATT 57.221 29.630 0.00 0.00 34.27 2.57
171 172 8.367660 ACTTCTTGTTTACTCATCATCTAGGA 57.632 34.615 0.00 0.00 0.00 2.94
172 173 8.986991 ACTTCTTGTTTACTCATCATCTAGGAT 58.013 33.333 0.00 0.00 0.00 3.24
173 174 9.474920 CTTCTTGTTTACTCATCATCTAGGATC 57.525 37.037 0.00 0.00 0.00 3.36
174 175 7.652727 TCTTGTTTACTCATCATCTAGGATCG 58.347 38.462 0.00 0.00 0.00 3.69
175 176 7.502561 TCTTGTTTACTCATCATCTAGGATCGA 59.497 37.037 0.00 0.00 0.00 3.59
176 177 7.767250 TGTTTACTCATCATCTAGGATCGAT 57.233 36.000 0.00 0.00 0.00 3.59
177 178 7.597386 TGTTTACTCATCATCTAGGATCGATG 58.403 38.462 0.54 3.42 39.62 3.84
178 179 4.717233 ACTCATCATCTAGGATCGATGC 57.283 45.455 9.16 9.16 38.47 3.91
179 180 4.085009 ACTCATCATCTAGGATCGATGCA 58.915 43.478 19.67 4.43 38.47 3.96
180 181 4.082300 ACTCATCATCTAGGATCGATGCAC 60.082 45.833 19.67 1.44 38.47 4.57
181 182 4.085009 TCATCATCTAGGATCGATGCACT 58.915 43.478 19.67 9.13 38.47 4.40
182 183 4.525874 TCATCATCTAGGATCGATGCACTT 59.474 41.667 19.67 0.81 38.47 3.16
183 184 4.944619 TCATCTAGGATCGATGCACTTT 57.055 40.909 19.67 0.42 38.47 2.66
184 185 5.282055 TCATCTAGGATCGATGCACTTTT 57.718 39.130 19.67 0.02 38.47 2.27
185 186 5.052481 TCATCTAGGATCGATGCACTTTTG 58.948 41.667 19.67 9.58 38.47 2.44
204 205 8.677300 CACTTTTGCATGTTTCCTAGTATATGT 58.323 33.333 0.00 0.00 0.00 2.29
205 206 9.243105 ACTTTTGCATGTTTCCTAGTATATGTT 57.757 29.630 0.00 0.00 0.00 2.71
206 207 9.507280 CTTTTGCATGTTTCCTAGTATATGTTG 57.493 33.333 0.00 0.00 0.00 3.33
207 208 8.574251 TTTGCATGTTTCCTAGTATATGTTGT 57.426 30.769 0.00 0.00 0.00 3.32
208 209 8.574251 TTGCATGTTTCCTAGTATATGTTGTT 57.426 30.769 0.00 0.00 0.00 2.83
209 210 8.208718 TGCATGTTTCCTAGTATATGTTGTTC 57.791 34.615 0.00 0.00 0.00 3.18
210 211 7.011016 TGCATGTTTCCTAGTATATGTTGTTCG 59.989 37.037 0.00 0.00 0.00 3.95
211 212 7.223971 GCATGTTTCCTAGTATATGTTGTTCGA 59.776 37.037 0.00 0.00 0.00 3.71
212 213 9.093970 CATGTTTCCTAGTATATGTTGTTCGAA 57.906 33.333 0.00 0.00 0.00 3.71
213 214 9.661563 ATGTTTCCTAGTATATGTTGTTCGAAA 57.338 29.630 0.00 0.00 0.00 3.46
214 215 9.491675 TGTTTCCTAGTATATGTTGTTCGAAAA 57.508 29.630 0.00 0.00 0.00 2.29
215 216 9.968743 GTTTCCTAGTATATGTTGTTCGAAAAG 57.031 33.333 0.00 0.00 0.00 2.27
216 217 8.712285 TTCCTAGTATATGTTGTTCGAAAAGG 57.288 34.615 0.00 0.00 0.00 3.11
217 218 7.844009 TCCTAGTATATGTTGTTCGAAAAGGT 58.156 34.615 0.00 0.00 0.00 3.50
218 219 7.762615 TCCTAGTATATGTTGTTCGAAAAGGTG 59.237 37.037 0.00 0.00 0.00 4.00
219 220 6.737254 AGTATATGTTGTTCGAAAAGGTGG 57.263 37.500 0.00 0.00 0.00 4.61
220 221 6.235664 AGTATATGTTGTTCGAAAAGGTGGT 58.764 36.000 0.00 0.00 0.00 4.16
221 222 3.708563 ATGTTGTTCGAAAAGGTGGTG 57.291 42.857 0.00 0.00 0.00 4.17
222 223 1.746220 TGTTGTTCGAAAAGGTGGTGG 59.254 47.619 0.00 0.00 0.00 4.61
223 224 1.066454 GTTGTTCGAAAAGGTGGTGGG 59.934 52.381 0.00 0.00 0.00 4.61
224 225 0.547075 TGTTCGAAAAGGTGGTGGGA 59.453 50.000 0.00 0.00 0.00 4.37
225 226 1.235724 GTTCGAAAAGGTGGTGGGAG 58.764 55.000 0.00 0.00 0.00 4.30
226 227 0.109723 TTCGAAAAGGTGGTGGGAGG 59.890 55.000 0.00 0.00 0.00 4.30
227 228 1.303317 CGAAAAGGTGGTGGGAGGG 60.303 63.158 0.00 0.00 0.00 4.30
228 229 1.076727 GAAAAGGTGGTGGGAGGGG 59.923 63.158 0.00 0.00 0.00 4.79
229 230 2.441035 GAAAAGGTGGTGGGAGGGGG 62.441 65.000 0.00 0.00 0.00 5.40
230 231 2.962825 AAAAGGTGGTGGGAGGGGGA 62.963 60.000 0.00 0.00 0.00 4.81
231 232 3.891432 AAGGTGGTGGGAGGGGGAG 62.891 68.421 0.00 0.00 0.00 4.30
233 234 4.348495 GTGGTGGGAGGGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
234 235 4.024984 TGGTGGGAGGGGGAGGAG 62.025 72.222 0.00 0.00 0.00 3.69
235 236 4.825679 GGTGGGAGGGGGAGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
236 237 3.695825 GTGGGAGGGGGAGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
237 238 3.695825 TGGGAGGGGGAGGAGGAC 61.696 72.222 0.00 0.00 0.00 3.85
238 239 4.500826 GGGAGGGGGAGGAGGACC 62.501 77.778 0.00 0.00 0.00 4.46
239 240 4.500826 GGAGGGGGAGGAGGACCC 62.501 77.778 0.00 0.00 46.59 4.46
244 245 2.609921 GGGAGGAGGACCCGGTTT 60.610 66.667 0.00 0.00 40.87 3.27
245 246 2.229203 GGGAGGAGGACCCGGTTTT 61.229 63.158 0.00 0.00 40.87 2.43
246 247 1.765727 GGAGGAGGACCCGGTTTTT 59.234 57.895 0.00 0.00 40.87 1.94
247 248 0.608308 GGAGGAGGACCCGGTTTTTG 60.608 60.000 0.00 0.00 40.87 2.44
248 249 0.608308 GAGGAGGACCCGGTTTTTGG 60.608 60.000 0.00 0.00 40.87 3.28
256 257 1.657822 CCCGGTTTTTGGGTTTGTTG 58.342 50.000 0.00 0.00 42.07 3.33
257 258 1.066071 CCCGGTTTTTGGGTTTGTTGT 60.066 47.619 0.00 0.00 42.07 3.32
258 259 2.003301 CCGGTTTTTGGGTTTGTTGTG 58.997 47.619 0.00 0.00 0.00 3.33
259 260 2.613223 CCGGTTTTTGGGTTTGTTGTGT 60.613 45.455 0.00 0.00 0.00 3.72
260 261 3.067833 CGGTTTTTGGGTTTGTTGTGTT 58.932 40.909 0.00 0.00 0.00 3.32
261 262 3.120511 CGGTTTTTGGGTTTGTTGTGTTG 60.121 43.478 0.00 0.00 0.00 3.33
262 263 3.815962 GGTTTTTGGGTTTGTTGTGTTGT 59.184 39.130 0.00 0.00 0.00 3.32
263 264 4.083749 GGTTTTTGGGTTTGTTGTGTTGTC 60.084 41.667 0.00 0.00 0.00 3.18
264 265 4.608948 TTTTGGGTTTGTTGTGTTGTCT 57.391 36.364 0.00 0.00 0.00 3.41
265 266 4.608948 TTTGGGTTTGTTGTGTTGTCTT 57.391 36.364 0.00 0.00 0.00 3.01
266 267 3.584406 TGGGTTTGTTGTGTTGTCTTG 57.416 42.857 0.00 0.00 0.00 3.02
267 268 2.267426 GGGTTTGTTGTGTTGTCTTGC 58.733 47.619 0.00 0.00 0.00 4.01
268 269 2.267426 GGTTTGTTGTGTTGTCTTGCC 58.733 47.619 0.00 0.00 0.00 4.52
269 270 2.267426 GTTTGTTGTGTTGTCTTGCCC 58.733 47.619 0.00 0.00 0.00 5.36
270 271 1.846007 TTGTTGTGTTGTCTTGCCCT 58.154 45.000 0.00 0.00 0.00 5.19
271 272 1.102154 TGTTGTGTTGTCTTGCCCTG 58.898 50.000 0.00 0.00 0.00 4.45
272 273 0.385390 GTTGTGTTGTCTTGCCCTGG 59.615 55.000 0.00 0.00 0.00 4.45
273 274 1.391157 TTGTGTTGTCTTGCCCTGGC 61.391 55.000 0.00 0.00 42.35 4.85
274 275 1.529244 GTGTTGTCTTGCCCTGGCT 60.529 57.895 9.97 0.00 42.51 4.75
275 276 1.109323 GTGTTGTCTTGCCCTGGCTT 61.109 55.000 9.97 0.00 42.51 4.35
276 277 0.396974 TGTTGTCTTGCCCTGGCTTT 60.397 50.000 9.97 0.00 42.51 3.51
277 278 0.032540 GTTGTCTTGCCCTGGCTTTG 59.967 55.000 9.97 0.00 42.51 2.77
278 279 1.114722 TTGTCTTGCCCTGGCTTTGG 61.115 55.000 9.97 0.00 42.51 3.28
289 290 3.066814 GCTTTGGCCAGGGCTCAG 61.067 66.667 20.24 10.83 41.60 3.35
290 291 2.437897 CTTTGGCCAGGGCTCAGT 59.562 61.111 15.38 0.00 41.60 3.41
291 292 1.228675 CTTTGGCCAGGGCTCAGTT 60.229 57.895 15.38 0.00 41.60 3.16
292 293 0.829182 CTTTGGCCAGGGCTCAGTTT 60.829 55.000 15.38 0.00 41.60 2.66
293 294 0.480690 TTTGGCCAGGGCTCAGTTTA 59.519 50.000 15.38 0.00 41.60 2.01
294 295 0.480690 TTGGCCAGGGCTCAGTTTAA 59.519 50.000 15.38 0.00 41.60 1.52
295 296 0.038166 TGGCCAGGGCTCAGTTTAAG 59.962 55.000 15.38 0.00 41.60 1.85
296 297 1.315981 GGCCAGGGCTCAGTTTAAGC 61.316 60.000 10.60 0.00 41.60 3.09
297 298 1.648467 GCCAGGGCTCAGTTTAAGCG 61.648 60.000 2.30 0.00 40.77 4.68
298 299 0.321653 CCAGGGCTCAGTTTAAGCGT 60.322 55.000 0.00 0.00 40.77 5.07
299 300 1.523758 CAGGGCTCAGTTTAAGCGTT 58.476 50.000 0.00 0.00 40.77 4.84
300 301 1.880027 CAGGGCTCAGTTTAAGCGTTT 59.120 47.619 0.00 0.00 40.77 3.60
301 302 1.880027 AGGGCTCAGTTTAAGCGTTTG 59.120 47.619 0.00 0.00 40.77 2.93
302 303 1.877443 GGGCTCAGTTTAAGCGTTTGA 59.123 47.619 0.00 0.00 40.77 2.69
303 304 2.350484 GGGCTCAGTTTAAGCGTTTGAC 60.350 50.000 0.00 0.00 40.77 3.18
304 305 2.548480 GGCTCAGTTTAAGCGTTTGACT 59.452 45.455 0.00 0.00 40.77 3.41
305 306 3.545633 GCTCAGTTTAAGCGTTTGACTG 58.454 45.455 17.95 17.95 39.16 3.51
306 307 3.607078 GCTCAGTTTAAGCGTTTGACTGG 60.607 47.826 21.28 15.75 38.53 4.00
307 308 2.289547 TCAGTTTAAGCGTTTGACTGGC 59.710 45.455 21.28 0.00 38.53 4.85
308 309 1.263217 AGTTTAAGCGTTTGACTGGCG 59.737 47.619 0.00 0.00 0.00 5.69
309 310 0.589223 TTTAAGCGTTTGACTGGCGG 59.411 50.000 0.00 0.00 0.00 6.13
310 311 0.249953 TTAAGCGTTTGACTGGCGGA 60.250 50.000 0.00 0.00 0.00 5.54
311 312 0.249953 TAAGCGTTTGACTGGCGGAA 60.250 50.000 0.00 0.00 0.00 4.30
312 313 1.098712 AAGCGTTTGACTGGCGGAAA 61.099 50.000 0.00 0.00 0.00 3.13
313 314 0.889186 AGCGTTTGACTGGCGGAAAT 60.889 50.000 0.00 0.00 0.00 2.17
314 315 0.800012 GCGTTTGACTGGCGGAAATA 59.200 50.000 0.00 0.00 0.00 1.40
315 316 1.198178 GCGTTTGACTGGCGGAAATAA 59.802 47.619 0.00 0.00 0.00 1.40
316 317 2.727916 GCGTTTGACTGGCGGAAATAAG 60.728 50.000 0.00 0.00 0.00 1.73
317 318 2.739913 CGTTTGACTGGCGGAAATAAGA 59.260 45.455 0.00 0.00 0.00 2.10
318 319 3.374058 CGTTTGACTGGCGGAAATAAGAT 59.626 43.478 0.00 0.00 0.00 2.40
319 320 4.494199 CGTTTGACTGGCGGAAATAAGATC 60.494 45.833 0.00 0.00 0.00 2.75
320 321 4.487714 TTGACTGGCGGAAATAAGATCT 57.512 40.909 0.00 0.00 0.00 2.75
321 322 4.487714 TGACTGGCGGAAATAAGATCTT 57.512 40.909 13.56 13.56 0.00 2.40
322 323 4.442706 TGACTGGCGGAAATAAGATCTTC 58.557 43.478 12.24 0.00 0.00 2.87
323 324 3.809905 ACTGGCGGAAATAAGATCTTCC 58.190 45.455 12.24 6.15 38.20 3.46
324 325 3.199946 ACTGGCGGAAATAAGATCTTCCA 59.800 43.478 12.24 10.19 41.10 3.53
325 326 3.541632 TGGCGGAAATAAGATCTTCCAC 58.458 45.455 12.24 0.67 41.10 4.02
326 327 2.879026 GGCGGAAATAAGATCTTCCACC 59.121 50.000 12.24 6.86 41.10 4.61
327 328 3.541632 GCGGAAATAAGATCTTCCACCA 58.458 45.455 12.24 0.00 41.10 4.17
328 329 4.137543 GCGGAAATAAGATCTTCCACCAT 58.862 43.478 12.24 0.00 41.10 3.55
329 330 4.214332 GCGGAAATAAGATCTTCCACCATC 59.786 45.833 12.24 3.50 41.10 3.51
330 331 4.757149 CGGAAATAAGATCTTCCACCATCC 59.243 45.833 12.24 11.00 41.10 3.51
331 332 5.455326 CGGAAATAAGATCTTCCACCATCCT 60.455 44.000 12.24 0.00 41.10 3.24
332 333 6.000840 GGAAATAAGATCTTCCACCATCCTC 58.999 44.000 12.24 0.82 40.79 3.71
333 334 6.409695 GGAAATAAGATCTTCCACCATCCTCA 60.410 42.308 12.24 0.00 40.79 3.86
334 335 6.776887 AATAAGATCTTCCACCATCCTCAT 57.223 37.500 12.24 0.00 0.00 2.90
335 336 4.703379 AAGATCTTCCACCATCCTCATC 57.297 45.455 0.88 0.00 0.00 2.92
336 337 2.978278 AGATCTTCCACCATCCTCATCC 59.022 50.000 0.00 0.00 0.00 3.51
337 338 1.511613 TCTTCCACCATCCTCATCCC 58.488 55.000 0.00 0.00 0.00 3.85
338 339 0.107456 CTTCCACCATCCTCATCCCG 59.893 60.000 0.00 0.00 0.00 5.14
339 340 0.620410 TTCCACCATCCTCATCCCGT 60.620 55.000 0.00 0.00 0.00 5.28
340 341 1.146930 CCACCATCCTCATCCCGTG 59.853 63.158 0.00 0.00 0.00 4.94
341 342 1.146930 CACCATCCTCATCCCGTGG 59.853 63.158 0.00 0.00 36.06 4.94
342 343 1.306997 ACCATCCTCATCCCGTGGT 60.307 57.895 0.00 0.00 38.30 4.16
343 344 0.031515 ACCATCCTCATCCCGTGGTA 60.032 55.000 0.00 0.00 41.15 3.25
344 345 0.681733 CCATCCTCATCCCGTGGTAG 59.318 60.000 0.00 0.00 0.00 3.18
345 346 1.414158 CATCCTCATCCCGTGGTAGT 58.586 55.000 0.00 0.00 0.00 2.73
346 347 1.069204 CATCCTCATCCCGTGGTAGTG 59.931 57.143 0.00 0.00 0.00 2.74
347 348 0.333652 TCCTCATCCCGTGGTAGTGA 59.666 55.000 0.00 0.00 0.00 3.41
348 349 1.063190 TCCTCATCCCGTGGTAGTGAT 60.063 52.381 0.00 0.00 0.00 3.06
349 350 1.762957 CCTCATCCCGTGGTAGTGATT 59.237 52.381 0.00 0.00 0.00 2.57
350 351 2.483714 CCTCATCCCGTGGTAGTGATTG 60.484 54.545 0.00 0.00 0.00 2.67
351 352 1.484653 TCATCCCGTGGTAGTGATTGG 59.515 52.381 0.00 0.00 0.00 3.16
352 353 0.180406 ATCCCGTGGTAGTGATTGGC 59.820 55.000 0.00 0.00 0.00 4.52
353 354 1.195442 TCCCGTGGTAGTGATTGGCA 61.195 55.000 0.00 0.00 0.00 4.92
354 355 0.107214 CCCGTGGTAGTGATTGGCAT 60.107 55.000 0.00 0.00 0.00 4.40
355 356 1.681780 CCCGTGGTAGTGATTGGCATT 60.682 52.381 0.00 0.00 0.00 3.56
356 357 1.401552 CCGTGGTAGTGATTGGCATTG 59.598 52.381 0.00 0.00 0.00 2.82
357 358 1.401552 CGTGGTAGTGATTGGCATTGG 59.598 52.381 0.00 0.00 0.00 3.16
358 359 1.134946 GTGGTAGTGATTGGCATTGGC 59.865 52.381 2.73 2.73 40.13 4.52
359 360 1.272369 TGGTAGTGATTGGCATTGGCA 60.272 47.619 9.11 9.11 43.71 4.92
360 361 1.406539 GGTAGTGATTGGCATTGGCAG 59.593 52.381 13.02 0.00 43.71 4.85
361 362 2.368439 GTAGTGATTGGCATTGGCAGA 58.632 47.619 13.02 5.43 43.71 4.26
362 363 1.471119 AGTGATTGGCATTGGCAGAG 58.529 50.000 13.02 0.00 43.71 3.35
363 364 0.458669 GTGATTGGCATTGGCAGAGG 59.541 55.000 13.02 0.00 43.71 3.69
364 365 0.685131 TGATTGGCATTGGCAGAGGG 60.685 55.000 13.02 0.00 43.71 4.30
365 366 2.024590 GATTGGCATTGGCAGAGGGC 62.025 60.000 13.02 0.00 43.71 5.19
372 373 2.934932 TGGCAGAGGGCATGTGGA 60.935 61.111 0.00 0.00 45.76 4.02
373 374 2.975265 TGGCAGAGGGCATGTGGAG 61.975 63.158 0.00 0.00 45.76 3.86
374 375 2.827642 GCAGAGGGCATGTGGAGC 60.828 66.667 0.00 0.00 43.97 4.70
375 376 2.996395 CAGAGGGCATGTGGAGCT 59.004 61.111 0.00 0.00 0.00 4.09
376 377 1.302285 CAGAGGGCATGTGGAGCTT 59.698 57.895 0.00 0.00 0.00 3.74
377 378 0.747283 CAGAGGGCATGTGGAGCTTC 60.747 60.000 0.00 0.00 0.00 3.86
378 379 1.203441 AGAGGGCATGTGGAGCTTCA 61.203 55.000 0.00 0.00 0.00 3.02
379 380 0.747283 GAGGGCATGTGGAGCTTCAG 60.747 60.000 0.00 0.00 0.00 3.02
419 420 4.098416 GCGTATTTCCGTCTACGTTTAGT 58.902 43.478 0.00 0.00 41.99 2.24
428 429 4.574013 CCGTCTACGTTTAGTCTAGGATGT 59.426 45.833 0.00 0.00 37.74 3.06
493 494 1.995376 TTGGTCTTTGGGCTTCTTCC 58.005 50.000 0.00 0.00 0.00 3.46
525 526 1.645455 CATGGCCAGCTTCGATTCG 59.355 57.895 13.05 0.00 0.00 3.34
542 543 1.471119 TCGTTGGGAATCTAGCGAGT 58.529 50.000 0.00 0.00 32.92 4.18
605 606 0.321122 CAGCCGCTTCACCTTCTTCT 60.321 55.000 0.00 0.00 0.00 2.85
606 607 0.398318 AGCCGCTTCACCTTCTTCTT 59.602 50.000 0.00 0.00 0.00 2.52
607 608 0.799393 GCCGCTTCACCTTCTTCTTC 59.201 55.000 0.00 0.00 0.00 2.87
608 609 1.609320 GCCGCTTCACCTTCTTCTTCT 60.609 52.381 0.00 0.00 0.00 2.85
609 610 2.772287 CCGCTTCACCTTCTTCTTCTT 58.228 47.619 0.00 0.00 0.00 2.52
610 611 2.739379 CCGCTTCACCTTCTTCTTCTTC 59.261 50.000 0.00 0.00 0.00 2.87
615 616 5.762711 GCTTCACCTTCTTCTTCTTCTTCTT 59.237 40.000 0.00 0.00 0.00 2.52
628 629 6.607600 TCTTCTTCTTCTTCGGGATGAGAATA 59.392 38.462 0.00 0.00 31.26 1.75
668 669 0.891373 TCTCCTTCTGGCTTCGACTG 59.109 55.000 0.00 0.00 0.00 3.51
684 685 1.444553 CTGGCGACTTCTCGGTCAC 60.445 63.158 0.00 0.00 40.53 3.67
686 687 0.607217 TGGCGACTTCTCGGTCACTA 60.607 55.000 0.00 0.00 40.53 2.74
688 689 0.520827 GCGACTTCTCGGTCACTACG 60.521 60.000 0.00 0.00 40.53 3.51
702 703 3.068560 TCACTACGCCAACAATGTTACC 58.931 45.455 0.00 0.00 0.00 2.85
708 709 1.529226 CCAACAATGTTACCTCGGCA 58.471 50.000 0.00 0.00 0.00 5.69
709 710 1.468520 CCAACAATGTTACCTCGGCAG 59.531 52.381 0.00 0.00 0.00 4.85
710 711 1.135689 CAACAATGTTACCTCGGCAGC 60.136 52.381 0.00 0.00 0.00 5.25
711 712 0.324943 ACAATGTTACCTCGGCAGCT 59.675 50.000 0.00 0.00 0.00 4.24
712 713 1.009829 CAATGTTACCTCGGCAGCTC 58.990 55.000 0.00 0.00 0.00 4.09
715 716 2.678934 TTACCTCGGCAGCTCGGT 60.679 61.111 0.00 0.00 0.00 4.69
716 717 3.001902 TTACCTCGGCAGCTCGGTG 62.002 63.158 10.01 0.00 0.00 4.94
723 1079 4.537433 GCAGCTCGGTGCCTAGGG 62.537 72.222 11.72 0.00 44.23 3.53
725 1081 3.077556 AGCTCGGTGCCTAGGGTG 61.078 66.667 11.72 0.00 44.23 4.61
726 1082 3.391382 GCTCGGTGCCTAGGGTGT 61.391 66.667 11.72 0.00 35.15 4.16
733 1089 1.272480 GGTGCCTAGGGTGTTCCAAAT 60.272 52.381 11.72 0.00 38.24 2.32
735 1091 3.014623 GTGCCTAGGGTGTTCCAAATAC 58.985 50.000 11.72 0.00 38.24 1.89
742 1098 2.629051 GGTGTTCCAAATACTCGGAGG 58.371 52.381 10.23 0.00 31.51 4.30
752 1108 0.738975 TACTCGGAGGCGACATCAAG 59.261 55.000 10.23 0.00 0.00 3.02
756 1112 1.519719 GGAGGCGACATCAAGCTCT 59.480 57.895 0.00 0.00 0.00 4.09
757 1113 0.529555 GGAGGCGACATCAAGCTCTC 60.530 60.000 0.00 0.00 33.20 3.20
798 1154 3.446570 CGGCGAGTTCGGTAGGGT 61.447 66.667 0.00 0.00 40.23 4.34
799 1155 2.183555 GGCGAGTTCGGTAGGGTG 59.816 66.667 3.50 0.00 40.23 4.61
800 1156 2.345760 GGCGAGTTCGGTAGGGTGA 61.346 63.158 3.50 0.00 40.23 4.02
802 1158 1.807886 CGAGTTCGGTAGGGTGAGG 59.192 63.158 0.00 0.00 35.37 3.86
804 1160 1.553706 GAGTTCGGTAGGGTGAGGAA 58.446 55.000 0.00 0.00 0.00 3.36
805 1161 1.204231 GAGTTCGGTAGGGTGAGGAAC 59.796 57.143 0.00 0.00 37.77 3.62
863 1262 3.119291 CAATCAGCAGTCGAGACATACC 58.881 50.000 5.99 0.00 0.00 2.73
875 1274 2.296471 GAGACATACCCGGGACTACATG 59.704 54.545 32.02 21.91 0.00 3.21
1027 1429 0.924226 ATCCCCACCCCAAACCCTAG 60.924 60.000 0.00 0.00 0.00 3.02
1038 1440 1.065126 CAAACCCTAGCCTTCCTCCTG 60.065 57.143 0.00 0.00 0.00 3.86
1041 1443 0.985490 CCCTAGCCTTCCTCCTGCTT 60.985 60.000 0.00 0.00 36.57 3.91
1045 1447 2.304831 GCCTTCCTCCTGCTTCCCT 61.305 63.158 0.00 0.00 0.00 4.20
1056 1458 2.402564 CTGCTTCCCTTCATCCTCCTA 58.597 52.381 0.00 0.00 0.00 2.94
1426 1828 3.812019 CGTCCTCCGACCTCGTGG 61.812 72.222 0.99 0.99 39.56 4.94
1491 1893 2.750350 CCCTTCCACTCCAACGCT 59.250 61.111 0.00 0.00 0.00 5.07
2121 2523 0.798776 CCCGCTCAACACACTCATTC 59.201 55.000 0.00 0.00 0.00 2.67
2160 2562 8.407457 TGTTTGAGAATTACACGATGATAGTC 57.593 34.615 0.00 0.00 0.00 2.59
2163 2565 6.209361 TGAGAATTACACGATGATAGTCAGC 58.791 40.000 0.00 0.00 0.00 4.26
2298 2700 9.791838 GTTTATGTTTTTGATTTGGATTTCGAC 57.208 29.630 0.00 0.00 0.00 4.20
2406 2808 2.932614 CAGTGACTACAGCTGTAATGGC 59.067 50.000 25.95 18.36 0.00 4.40
2415 2817 1.729276 CTGTAATGGCCGGCATGTG 59.271 57.895 30.85 7.19 0.00 3.21
2439 2841 9.469807 GTGATTACAATGACTAGAAATCTCGAT 57.530 33.333 0.00 0.00 0.00 3.59
2526 2928 1.518056 CTGAGCACAATGCCACGGTT 61.518 55.000 0.00 0.00 46.52 4.44
2547 2949 2.805671 TGTTGATTACACTTGGAGCACG 59.194 45.455 0.00 0.00 0.00 5.34
2553 2955 1.961277 CACTTGGAGCACGGGACAC 60.961 63.158 0.00 0.00 0.00 3.67
2868 3270 8.932434 ATATGTATGCCATTTACATGTTGGTA 57.068 30.769 14.95 11.67 39.84 3.25
2952 3354 3.274288 GCTATCAGTTTCCTTGTCTGGG 58.726 50.000 0.00 0.00 0.00 4.45
2976 3378 7.081349 GGGTCTTTGTTTTTGGTTTCTTTTTG 58.919 34.615 0.00 0.00 0.00 2.44
2994 3396 7.166167 TCTTTTTGGTGTATTCTAAGAGGGAC 58.834 38.462 0.00 0.00 0.00 4.46
3064 3466 6.710744 AGTTTTGTTGGTGGATACTACTTGAG 59.289 38.462 0.00 0.00 37.61 3.02
3619 4218 5.416013 GGAGGAAACCCTTCTTGTCTTTATG 59.584 44.000 0.00 0.00 33.25 1.90
3720 4319 4.760530 TGTCCTGCTGCTTGATTAGTAT 57.239 40.909 0.00 0.00 0.00 2.12
3894 4493 7.233962 GGTAAAAAGGGGAAAGGAGATTTTACA 59.766 37.037 15.75 0.00 40.69 2.41
4026 4625 9.632638 AGTGGTATATAATGAATGCTTCAAACT 57.367 29.630 3.27 0.00 43.95 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.533569 AATCCAAATGAAACCTTAATATCGGT 57.466 30.769 0.00 0.00 34.27 4.69
1 2 9.893305 GTAATCCAAATGAAACCTTAATATCGG 57.107 33.333 0.00 0.00 0.00 4.18
10 11 9.710900 GAAAATCTTGTAATCCAAATGAAACCT 57.289 29.630 0.00 0.00 31.20 3.50
11 12 8.647226 CGAAAATCTTGTAATCCAAATGAAACC 58.353 33.333 0.00 0.00 31.20 3.27
12 13 9.191995 ACGAAAATCTTGTAATCCAAATGAAAC 57.808 29.630 0.00 0.00 31.20 2.78
15 16 8.673711 CCTACGAAAATCTTGTAATCCAAATGA 58.326 33.333 0.00 0.00 31.20 2.57
16 17 8.673711 TCCTACGAAAATCTTGTAATCCAAATG 58.326 33.333 0.00 0.00 31.20 2.32
17 18 8.674607 GTCCTACGAAAATCTTGTAATCCAAAT 58.325 33.333 0.00 0.00 31.20 2.32
18 19 7.120138 GGTCCTACGAAAATCTTGTAATCCAAA 59.880 37.037 0.00 0.00 31.20 3.28
19 20 6.596497 GGTCCTACGAAAATCTTGTAATCCAA 59.404 38.462 0.00 0.00 0.00 3.53
20 21 6.070424 AGGTCCTACGAAAATCTTGTAATCCA 60.070 38.462 0.00 0.00 0.00 3.41
21 22 6.346896 AGGTCCTACGAAAATCTTGTAATCC 58.653 40.000 0.00 0.00 0.00 3.01
22 23 7.266400 AGAGGTCCTACGAAAATCTTGTAATC 58.734 38.462 0.00 0.00 0.00 1.75
23 24 7.184067 AGAGGTCCTACGAAAATCTTGTAAT 57.816 36.000 0.00 0.00 0.00 1.89
24 25 6.600882 AGAGGTCCTACGAAAATCTTGTAA 57.399 37.500 0.00 0.00 0.00 2.41
25 26 6.096001 GGTAGAGGTCCTACGAAAATCTTGTA 59.904 42.308 0.00 0.00 46.81 2.41
26 27 5.105432 GGTAGAGGTCCTACGAAAATCTTGT 60.105 44.000 0.00 0.00 46.81 3.16
27 28 5.127356 AGGTAGAGGTCCTACGAAAATCTTG 59.873 44.000 0.00 0.00 46.81 3.02
28 29 5.270794 AGGTAGAGGTCCTACGAAAATCTT 58.729 41.667 0.00 0.00 46.81 2.40
29 30 4.869451 AGGTAGAGGTCCTACGAAAATCT 58.131 43.478 0.00 0.00 46.81 2.40
30 31 5.595257 AAGGTAGAGGTCCTACGAAAATC 57.405 43.478 0.00 0.00 46.81 2.17
31 32 6.837568 TGATAAGGTAGAGGTCCTACGAAAAT 59.162 38.462 0.00 0.00 46.81 1.82
32 33 6.189859 TGATAAGGTAGAGGTCCTACGAAAA 58.810 40.000 0.00 0.00 46.81 2.29
33 34 5.759059 TGATAAGGTAGAGGTCCTACGAAA 58.241 41.667 0.00 0.00 46.81 3.46
34 35 5.131642 TCTGATAAGGTAGAGGTCCTACGAA 59.868 44.000 0.00 0.00 46.81 3.85
35 36 4.657504 TCTGATAAGGTAGAGGTCCTACGA 59.342 45.833 0.00 0.00 46.81 3.43
36 37 4.756135 GTCTGATAAGGTAGAGGTCCTACG 59.244 50.000 0.00 0.00 46.81 3.51
37 38 5.944135 AGTCTGATAAGGTAGAGGTCCTAC 58.056 45.833 0.00 0.00 45.48 3.18
38 39 5.221682 CGAGTCTGATAAGGTAGAGGTCCTA 60.222 48.000 0.00 0.00 34.56 2.94
39 40 4.445162 CGAGTCTGATAAGGTAGAGGTCCT 60.445 50.000 0.00 0.00 36.81 3.85
40 41 3.816523 CGAGTCTGATAAGGTAGAGGTCC 59.183 52.174 0.00 0.00 0.00 4.46
41 42 4.453751 ACGAGTCTGATAAGGTAGAGGTC 58.546 47.826 0.00 0.00 0.00 3.85
42 43 4.506937 ACGAGTCTGATAAGGTAGAGGT 57.493 45.455 0.00 0.00 0.00 3.85
43 44 5.450688 CCAAACGAGTCTGATAAGGTAGAGG 60.451 48.000 0.00 0.00 0.00 3.69
44 45 5.357314 TCCAAACGAGTCTGATAAGGTAGAG 59.643 44.000 0.00 0.00 0.00 2.43
45 46 5.258841 TCCAAACGAGTCTGATAAGGTAGA 58.741 41.667 0.00 0.00 0.00 2.59
46 47 5.578005 TCCAAACGAGTCTGATAAGGTAG 57.422 43.478 0.00 0.00 0.00 3.18
47 48 5.655090 TGATCCAAACGAGTCTGATAAGGTA 59.345 40.000 0.00 0.00 0.00 3.08
48 49 4.466370 TGATCCAAACGAGTCTGATAAGGT 59.534 41.667 0.00 0.00 0.00 3.50
49 50 4.806247 GTGATCCAAACGAGTCTGATAAGG 59.194 45.833 0.00 0.00 0.00 2.69
50 51 5.410924 TGTGATCCAAACGAGTCTGATAAG 58.589 41.667 0.00 0.00 0.00 1.73
51 52 5.400066 TGTGATCCAAACGAGTCTGATAA 57.600 39.130 0.00 0.00 0.00 1.75
52 53 5.598416 ATGTGATCCAAACGAGTCTGATA 57.402 39.130 0.00 0.00 0.00 2.15
53 54 3.961480 TGTGATCCAAACGAGTCTGAT 57.039 42.857 0.00 0.00 0.00 2.90
54 55 3.961480 ATGTGATCCAAACGAGTCTGA 57.039 42.857 0.00 0.00 0.00 3.27
55 56 5.812127 TGAATATGTGATCCAAACGAGTCTG 59.188 40.000 0.00 0.00 0.00 3.51
56 57 5.812642 GTGAATATGTGATCCAAACGAGTCT 59.187 40.000 0.00 0.00 0.00 3.24
57 58 5.580691 TGTGAATATGTGATCCAAACGAGTC 59.419 40.000 0.00 0.00 0.00 3.36
58 59 5.487433 TGTGAATATGTGATCCAAACGAGT 58.513 37.500 0.00 0.00 0.00 4.18
59 60 6.424683 CATGTGAATATGTGATCCAAACGAG 58.575 40.000 0.00 0.00 0.00 4.18
60 61 5.296531 CCATGTGAATATGTGATCCAAACGA 59.703 40.000 0.00 0.00 0.00 3.85
61 62 5.066375 ACCATGTGAATATGTGATCCAAACG 59.934 40.000 0.00 0.00 0.00 3.60
62 63 6.455360 ACCATGTGAATATGTGATCCAAAC 57.545 37.500 0.00 0.00 0.00 2.93
63 64 5.296531 CGACCATGTGAATATGTGATCCAAA 59.703 40.000 0.00 0.00 0.00 3.28
64 65 4.815846 CGACCATGTGAATATGTGATCCAA 59.184 41.667 0.00 0.00 0.00 3.53
65 66 4.141733 ACGACCATGTGAATATGTGATCCA 60.142 41.667 0.00 0.00 0.00 3.41
66 67 4.380531 ACGACCATGTGAATATGTGATCC 58.619 43.478 0.00 0.00 0.00 3.36
67 68 5.294306 ACAACGACCATGTGAATATGTGATC 59.706 40.000 0.00 0.00 0.00 2.92
68 69 5.185454 ACAACGACCATGTGAATATGTGAT 58.815 37.500 0.00 0.00 0.00 3.06
69 70 4.574892 ACAACGACCATGTGAATATGTGA 58.425 39.130 0.00 0.00 0.00 3.58
70 71 4.944962 ACAACGACCATGTGAATATGTG 57.055 40.909 0.00 0.00 0.00 3.21
71 72 5.000591 TCAACAACGACCATGTGAATATGT 58.999 37.500 0.00 0.00 0.00 2.29
72 73 5.544136 TCAACAACGACCATGTGAATATG 57.456 39.130 0.00 0.00 0.00 1.78
73 74 7.467267 GCTTATCAACAACGACCATGTGAATAT 60.467 37.037 0.00 0.00 0.00 1.28
74 75 6.183360 GCTTATCAACAACGACCATGTGAATA 60.183 38.462 0.00 0.00 0.00 1.75
75 76 5.391950 GCTTATCAACAACGACCATGTGAAT 60.392 40.000 0.00 0.00 0.00 2.57
76 77 4.083537 GCTTATCAACAACGACCATGTGAA 60.084 41.667 0.00 0.00 0.00 3.18
77 78 3.435327 GCTTATCAACAACGACCATGTGA 59.565 43.478 0.00 0.00 0.00 3.58
78 79 3.426159 GGCTTATCAACAACGACCATGTG 60.426 47.826 0.00 0.00 0.00 3.21
79 80 2.747446 GGCTTATCAACAACGACCATGT 59.253 45.455 0.00 0.00 0.00 3.21
80 81 3.009723 AGGCTTATCAACAACGACCATG 58.990 45.455 0.00 0.00 0.00 3.66
81 82 3.270877 GAGGCTTATCAACAACGACCAT 58.729 45.455 0.00 0.00 0.00 3.55
82 83 2.614481 GGAGGCTTATCAACAACGACCA 60.614 50.000 0.00 0.00 0.00 4.02
83 84 2.007608 GGAGGCTTATCAACAACGACC 58.992 52.381 0.00 0.00 0.00 4.79
84 85 2.695359 TGGAGGCTTATCAACAACGAC 58.305 47.619 0.00 0.00 0.00 4.34
85 86 3.627395 ATGGAGGCTTATCAACAACGA 57.373 42.857 0.00 0.00 0.00 3.85
86 87 4.442706 AGTATGGAGGCTTATCAACAACG 58.557 43.478 0.00 0.00 0.00 4.10
87 88 8.345565 CAATAAGTATGGAGGCTTATCAACAAC 58.654 37.037 0.00 0.00 37.03 3.32
88 89 7.013274 GCAATAAGTATGGAGGCTTATCAACAA 59.987 37.037 0.00 0.00 37.03 2.83
89 90 6.486657 GCAATAAGTATGGAGGCTTATCAACA 59.513 38.462 0.00 0.00 37.03 3.33
90 91 6.712547 AGCAATAAGTATGGAGGCTTATCAAC 59.287 38.462 0.00 0.00 37.03 3.18
91 92 6.841601 AGCAATAAGTATGGAGGCTTATCAA 58.158 36.000 0.00 0.00 37.03 2.57
92 93 6.439636 AGCAATAAGTATGGAGGCTTATCA 57.560 37.500 0.00 0.00 37.03 2.15
93 94 7.164803 AGAAGCAATAAGTATGGAGGCTTATC 58.835 38.462 0.00 0.00 39.91 1.75
94 95 7.084268 AGAAGCAATAAGTATGGAGGCTTAT 57.916 36.000 0.00 0.00 39.91 1.73
95 96 6.500589 AGAAGCAATAAGTATGGAGGCTTA 57.499 37.500 0.00 0.00 39.91 3.09
96 97 5.379706 AGAAGCAATAAGTATGGAGGCTT 57.620 39.130 0.00 0.00 42.24 4.35
97 98 5.128919 CAAGAAGCAATAAGTATGGAGGCT 58.871 41.667 0.00 0.00 0.00 4.58
98 99 4.884164 ACAAGAAGCAATAAGTATGGAGGC 59.116 41.667 0.00 0.00 0.00 4.70
99 100 6.825721 AGAACAAGAAGCAATAAGTATGGAGG 59.174 38.462 0.00 0.00 0.00 4.30
100 101 7.335422 ACAGAACAAGAAGCAATAAGTATGGAG 59.665 37.037 0.00 0.00 0.00 3.86
101 102 7.168219 ACAGAACAAGAAGCAATAAGTATGGA 58.832 34.615 0.00 0.00 0.00 3.41
102 103 7.383102 ACAGAACAAGAAGCAATAAGTATGG 57.617 36.000 0.00 0.00 0.00 2.74
103 104 9.371136 TCTACAGAACAAGAAGCAATAAGTATG 57.629 33.333 0.00 0.00 0.00 2.39
104 105 9.944376 TTCTACAGAACAAGAAGCAATAAGTAT 57.056 29.630 0.00 0.00 0.00 2.12
105 106 9.424319 CTTCTACAGAACAAGAAGCAATAAGTA 57.576 33.333 0.00 0.00 41.51 2.24
106 107 8.316640 CTTCTACAGAACAAGAAGCAATAAGT 57.683 34.615 0.00 0.00 41.51 2.24
115 116 9.477484 GATACTGAAACTTCTACAGAACAAGAA 57.523 33.333 0.00 0.00 35.85 2.52
116 117 8.638873 TGATACTGAAACTTCTACAGAACAAGA 58.361 33.333 0.00 0.00 35.85 3.02
117 118 8.818141 TGATACTGAAACTTCTACAGAACAAG 57.182 34.615 0.00 0.00 35.85 3.16
118 119 9.778741 AATGATACTGAAACTTCTACAGAACAA 57.221 29.630 0.00 0.00 35.85 2.83
145 146 8.816894 TCCTAGATGATGAGTAAACAAGAAGTT 58.183 33.333 0.00 0.00 43.89 2.66
146 147 8.367660 TCCTAGATGATGAGTAAACAAGAAGT 57.632 34.615 0.00 0.00 0.00 3.01
147 148 9.474920 GATCCTAGATGATGAGTAAACAAGAAG 57.525 37.037 0.00 0.00 0.00 2.85
148 149 8.138074 CGATCCTAGATGATGAGTAAACAAGAA 58.862 37.037 0.00 0.00 0.00 2.52
149 150 7.502561 TCGATCCTAGATGATGAGTAAACAAGA 59.497 37.037 0.00 0.00 0.00 3.02
150 151 7.652727 TCGATCCTAGATGATGAGTAAACAAG 58.347 38.462 0.00 0.00 0.00 3.16
151 152 7.582667 TCGATCCTAGATGATGAGTAAACAA 57.417 36.000 0.00 0.00 0.00 2.83
152 153 7.597386 CATCGATCCTAGATGATGAGTAAACA 58.403 38.462 0.00 0.00 46.09 2.83
153 154 6.529829 GCATCGATCCTAGATGATGAGTAAAC 59.470 42.308 11.84 0.00 46.09 2.01
154 155 6.209391 TGCATCGATCCTAGATGATGAGTAAA 59.791 38.462 11.84 0.00 46.09 2.01
155 156 5.711976 TGCATCGATCCTAGATGATGAGTAA 59.288 40.000 11.84 0.00 46.09 2.24
156 157 5.124617 GTGCATCGATCCTAGATGATGAGTA 59.875 44.000 11.84 0.00 46.09 2.59
157 158 4.082300 GTGCATCGATCCTAGATGATGAGT 60.082 45.833 11.84 0.00 46.09 3.41
158 159 4.158209 AGTGCATCGATCCTAGATGATGAG 59.842 45.833 11.84 0.00 46.09 2.90
159 160 4.085009 AGTGCATCGATCCTAGATGATGA 58.915 43.478 11.84 2.52 46.09 2.92
160 161 4.453177 AGTGCATCGATCCTAGATGATG 57.547 45.455 11.84 7.28 46.09 3.07
161 162 5.480642 AAAGTGCATCGATCCTAGATGAT 57.519 39.130 11.84 0.00 46.09 2.45
162 163 4.944619 AAAGTGCATCGATCCTAGATGA 57.055 40.909 11.84 0.00 46.09 2.92
163 164 5.340010 CAAAAGTGCATCGATCCTAGATG 57.660 43.478 0.00 5.08 45.99 2.90
178 179 8.677300 ACATATACTAGGAAACATGCAAAAGTG 58.323 33.333 0.00 0.00 0.00 3.16
179 180 8.807948 ACATATACTAGGAAACATGCAAAAGT 57.192 30.769 0.00 0.00 0.00 2.66
180 181 9.507280 CAACATATACTAGGAAACATGCAAAAG 57.493 33.333 0.00 0.00 0.00 2.27
181 182 9.019656 ACAACATATACTAGGAAACATGCAAAA 57.980 29.630 0.00 0.00 0.00 2.44
182 183 8.574251 ACAACATATACTAGGAAACATGCAAA 57.426 30.769 0.00 0.00 0.00 3.68
183 184 8.574251 AACAACATATACTAGGAAACATGCAA 57.426 30.769 0.00 0.00 0.00 4.08
184 185 7.011016 CGAACAACATATACTAGGAAACATGCA 59.989 37.037 0.00 0.00 0.00 3.96
185 186 7.223971 TCGAACAACATATACTAGGAAACATGC 59.776 37.037 0.00 0.00 0.00 4.06
186 187 8.642908 TCGAACAACATATACTAGGAAACATG 57.357 34.615 0.00 0.00 0.00 3.21
187 188 9.661563 TTTCGAACAACATATACTAGGAAACAT 57.338 29.630 0.00 0.00 0.00 2.71
188 189 9.491675 TTTTCGAACAACATATACTAGGAAACA 57.508 29.630 0.00 0.00 0.00 2.83
189 190 9.968743 CTTTTCGAACAACATATACTAGGAAAC 57.031 33.333 0.00 0.00 0.00 2.78
190 191 9.158233 CCTTTTCGAACAACATATACTAGGAAA 57.842 33.333 0.00 0.00 0.00 3.13
191 192 8.316214 ACCTTTTCGAACAACATATACTAGGAA 58.684 33.333 0.00 0.00 0.00 3.36
192 193 7.762615 CACCTTTTCGAACAACATATACTAGGA 59.237 37.037 0.00 0.00 0.00 2.94
193 194 7.011109 CCACCTTTTCGAACAACATATACTAGG 59.989 40.741 0.00 0.00 0.00 3.02
194 195 7.548075 ACCACCTTTTCGAACAACATATACTAG 59.452 37.037 0.00 0.00 0.00 2.57
195 196 7.332430 CACCACCTTTTCGAACAACATATACTA 59.668 37.037 0.00 0.00 0.00 1.82
196 197 6.148811 CACCACCTTTTCGAACAACATATACT 59.851 38.462 0.00 0.00 0.00 2.12
197 198 6.311723 CACCACCTTTTCGAACAACATATAC 58.688 40.000 0.00 0.00 0.00 1.47
198 199 5.413213 CCACCACCTTTTCGAACAACATATA 59.587 40.000 0.00 0.00 0.00 0.86
199 200 4.217550 CCACCACCTTTTCGAACAACATAT 59.782 41.667 0.00 0.00 0.00 1.78
200 201 3.566322 CCACCACCTTTTCGAACAACATA 59.434 43.478 0.00 0.00 0.00 2.29
201 202 2.360801 CCACCACCTTTTCGAACAACAT 59.639 45.455 0.00 0.00 0.00 2.71
202 203 1.746220 CCACCACCTTTTCGAACAACA 59.254 47.619 0.00 0.00 0.00 3.33
203 204 1.066454 CCCACCACCTTTTCGAACAAC 59.934 52.381 0.00 0.00 0.00 3.32
204 205 1.064611 TCCCACCACCTTTTCGAACAA 60.065 47.619 0.00 0.00 0.00 2.83
205 206 0.547075 TCCCACCACCTTTTCGAACA 59.453 50.000 0.00 0.00 0.00 3.18
206 207 1.235724 CTCCCACCACCTTTTCGAAC 58.764 55.000 0.00 0.00 0.00 3.95
207 208 0.109723 CCTCCCACCACCTTTTCGAA 59.890 55.000 0.00 0.00 0.00 3.71
208 209 1.758592 CCTCCCACCACCTTTTCGA 59.241 57.895 0.00 0.00 0.00 3.71
209 210 1.303317 CCCTCCCACCACCTTTTCG 60.303 63.158 0.00 0.00 0.00 3.46
210 211 1.076727 CCCCTCCCACCACCTTTTC 59.923 63.158 0.00 0.00 0.00 2.29
211 212 2.478803 CCCCCTCCCACCACCTTTT 61.479 63.158 0.00 0.00 0.00 2.27
212 213 2.863988 CCCCCTCCCACCACCTTT 60.864 66.667 0.00 0.00 0.00 3.11
213 214 3.882670 TCCCCCTCCCACCACCTT 61.883 66.667 0.00 0.00 0.00 3.50
214 215 4.354943 CTCCCCCTCCCACCACCT 62.355 72.222 0.00 0.00 0.00 4.00
216 217 4.348495 TCCTCCCCCTCCCACCAC 62.348 72.222 0.00 0.00 0.00 4.16
217 218 4.024984 CTCCTCCCCCTCCCACCA 62.025 72.222 0.00 0.00 0.00 4.17
218 219 4.825679 CCTCCTCCCCCTCCCACC 62.826 77.778 0.00 0.00 0.00 4.61
219 220 3.695825 TCCTCCTCCCCCTCCCAC 61.696 72.222 0.00 0.00 0.00 4.61
220 221 3.695825 GTCCTCCTCCCCCTCCCA 61.696 72.222 0.00 0.00 0.00 4.37
221 222 4.500826 GGTCCTCCTCCCCCTCCC 62.501 77.778 0.00 0.00 0.00 4.30
222 223 4.500826 GGGTCCTCCTCCCCCTCC 62.501 77.778 0.00 0.00 39.08 4.30
223 224 4.862823 CGGGTCCTCCTCCCCCTC 62.863 77.778 0.00 0.00 41.78 4.30
226 227 4.735599 AACCGGGTCCTCCTCCCC 62.736 72.222 6.32 0.00 41.78 4.81
227 228 1.786407 AAAAACCGGGTCCTCCTCCC 61.786 60.000 6.32 0.00 41.41 4.30
228 229 0.608308 CAAAAACCGGGTCCTCCTCC 60.608 60.000 6.32 0.00 0.00 4.30
229 230 0.608308 CCAAAAACCGGGTCCTCCTC 60.608 60.000 6.32 0.00 0.00 3.71
230 231 1.458927 CCAAAAACCGGGTCCTCCT 59.541 57.895 6.32 0.00 0.00 3.69
231 232 1.605451 CCCAAAAACCGGGTCCTCC 60.605 63.158 6.32 0.00 39.05 4.30
232 233 4.090723 CCCAAAAACCGGGTCCTC 57.909 61.111 6.32 0.00 39.05 3.71
238 239 2.003301 CACAACAAACCCAAAAACCGG 58.997 47.619 0.00 0.00 0.00 5.28
239 240 2.689646 ACACAACAAACCCAAAAACCG 58.310 42.857 0.00 0.00 0.00 4.44
240 241 3.815962 ACAACACAACAAACCCAAAAACC 59.184 39.130 0.00 0.00 0.00 3.27
241 242 4.752604 AGACAACACAACAAACCCAAAAAC 59.247 37.500 0.00 0.00 0.00 2.43
242 243 4.962155 AGACAACACAACAAACCCAAAAA 58.038 34.783 0.00 0.00 0.00 1.94
243 244 4.608948 AGACAACACAACAAACCCAAAA 57.391 36.364 0.00 0.00 0.00 2.44
244 245 4.310769 CAAGACAACACAACAAACCCAAA 58.689 39.130 0.00 0.00 0.00 3.28
245 246 3.862642 GCAAGACAACACAACAAACCCAA 60.863 43.478 0.00 0.00 0.00 4.12
246 247 2.353208 GCAAGACAACACAACAAACCCA 60.353 45.455 0.00 0.00 0.00 4.51
247 248 2.267426 GCAAGACAACACAACAAACCC 58.733 47.619 0.00 0.00 0.00 4.11
248 249 2.267426 GGCAAGACAACACAACAAACC 58.733 47.619 0.00 0.00 0.00 3.27
249 250 2.094234 AGGGCAAGACAACACAACAAAC 60.094 45.455 0.00 0.00 0.00 2.93
250 251 2.094286 CAGGGCAAGACAACACAACAAA 60.094 45.455 0.00 0.00 0.00 2.83
251 252 1.476085 CAGGGCAAGACAACACAACAA 59.524 47.619 0.00 0.00 0.00 2.83
252 253 1.102154 CAGGGCAAGACAACACAACA 58.898 50.000 0.00 0.00 0.00 3.33
253 254 0.385390 CCAGGGCAAGACAACACAAC 59.615 55.000 0.00 0.00 0.00 3.32
254 255 1.391157 GCCAGGGCAAGACAACACAA 61.391 55.000 5.20 0.00 41.49 3.33
255 256 1.827789 GCCAGGGCAAGACAACACA 60.828 57.895 5.20 0.00 41.49 3.72
256 257 1.109323 AAGCCAGGGCAAGACAACAC 61.109 55.000 13.63 0.00 44.88 3.32
257 258 0.396974 AAAGCCAGGGCAAGACAACA 60.397 50.000 13.63 0.00 44.88 3.33
258 259 0.032540 CAAAGCCAGGGCAAGACAAC 59.967 55.000 13.63 0.00 44.88 3.32
259 260 1.114722 CCAAAGCCAGGGCAAGACAA 61.115 55.000 13.63 0.00 44.88 3.18
260 261 1.531365 CCAAAGCCAGGGCAAGACA 60.531 57.895 13.63 0.00 44.88 3.41
261 262 3.369921 CCAAAGCCAGGGCAAGAC 58.630 61.111 13.63 0.00 44.88 3.01
272 273 3.066814 CTGAGCCCTGGCCAAAGC 61.067 66.667 17.07 17.07 43.17 3.51
273 274 0.829182 AAACTGAGCCCTGGCCAAAG 60.829 55.000 7.01 1.24 43.17 2.77
274 275 0.480690 TAAACTGAGCCCTGGCCAAA 59.519 50.000 7.01 0.00 43.17 3.28
275 276 0.480690 TTAAACTGAGCCCTGGCCAA 59.519 50.000 7.01 0.00 43.17 4.52
276 277 0.038166 CTTAAACTGAGCCCTGGCCA 59.962 55.000 4.71 4.71 43.17 5.36
277 278 1.315981 GCTTAAACTGAGCCCTGGCC 61.316 60.000 4.13 0.00 43.17 5.36
278 279 1.648467 CGCTTAAACTGAGCCCTGGC 61.648 60.000 0.00 0.00 36.81 4.85
279 280 0.321653 ACGCTTAAACTGAGCCCTGG 60.322 55.000 0.00 0.00 36.81 4.45
280 281 1.523758 AACGCTTAAACTGAGCCCTG 58.476 50.000 0.00 0.00 36.81 4.45
281 282 1.880027 CAAACGCTTAAACTGAGCCCT 59.120 47.619 0.00 0.00 36.81 5.19
282 283 1.877443 TCAAACGCTTAAACTGAGCCC 59.123 47.619 0.00 0.00 36.81 5.19
283 284 2.548480 AGTCAAACGCTTAAACTGAGCC 59.452 45.455 0.00 0.00 36.81 4.70
284 285 3.545633 CAGTCAAACGCTTAAACTGAGC 58.454 45.455 7.23 0.00 39.72 4.26
285 286 3.607078 GCCAGTCAAACGCTTAAACTGAG 60.607 47.826 12.42 6.28 39.72 3.35
286 287 2.289547 GCCAGTCAAACGCTTAAACTGA 59.710 45.455 12.42 0.00 39.72 3.41
287 288 2.650608 GCCAGTCAAACGCTTAAACTG 58.349 47.619 6.37 6.37 37.64 3.16
288 289 1.263217 CGCCAGTCAAACGCTTAAACT 59.737 47.619 0.00 0.00 0.00 2.66
289 290 1.662026 CCGCCAGTCAAACGCTTAAAC 60.662 52.381 0.00 0.00 0.00 2.01
290 291 0.589223 CCGCCAGTCAAACGCTTAAA 59.411 50.000 0.00 0.00 0.00 1.52
291 292 0.249953 TCCGCCAGTCAAACGCTTAA 60.250 50.000 0.00 0.00 0.00 1.85
292 293 0.249953 TTCCGCCAGTCAAACGCTTA 60.250 50.000 0.00 0.00 0.00 3.09
293 294 1.098712 TTTCCGCCAGTCAAACGCTT 61.099 50.000 0.00 0.00 0.00 4.68
294 295 0.889186 ATTTCCGCCAGTCAAACGCT 60.889 50.000 0.00 0.00 0.00 5.07
295 296 0.800012 TATTTCCGCCAGTCAAACGC 59.200 50.000 0.00 0.00 0.00 4.84
296 297 2.739913 TCTTATTTCCGCCAGTCAAACG 59.260 45.455 0.00 0.00 0.00 3.60
297 298 4.636206 AGATCTTATTTCCGCCAGTCAAAC 59.364 41.667 0.00 0.00 0.00 2.93
298 299 4.843728 AGATCTTATTTCCGCCAGTCAAA 58.156 39.130 0.00 0.00 0.00 2.69
299 300 4.487714 AGATCTTATTTCCGCCAGTCAA 57.512 40.909 0.00 0.00 0.00 3.18
300 301 4.442706 GAAGATCTTATTTCCGCCAGTCA 58.557 43.478 8.25 0.00 0.00 3.41
301 302 3.810386 GGAAGATCTTATTTCCGCCAGTC 59.190 47.826 8.25 0.00 34.09 3.51
302 303 3.199946 TGGAAGATCTTATTTCCGCCAGT 59.800 43.478 8.25 0.00 44.66 4.00
303 304 3.561725 GTGGAAGATCTTATTTCCGCCAG 59.438 47.826 8.25 0.00 44.41 4.85
304 305 3.541632 GTGGAAGATCTTATTTCCGCCA 58.458 45.455 8.25 6.82 44.41 5.69
307 308 4.757149 GGATGGTGGAAGATCTTATTTCCG 59.243 45.833 8.25 0.00 44.66 4.30
308 309 5.946486 AGGATGGTGGAAGATCTTATTTCC 58.054 41.667 8.25 6.07 42.56 3.13
309 310 6.595682 TGAGGATGGTGGAAGATCTTATTTC 58.404 40.000 8.25 0.00 0.00 2.17
310 311 6.581388 TGAGGATGGTGGAAGATCTTATTT 57.419 37.500 8.25 0.00 0.00 1.40
311 312 6.240118 GGATGAGGATGGTGGAAGATCTTATT 60.240 42.308 8.25 0.00 0.00 1.40
312 313 5.250313 GGATGAGGATGGTGGAAGATCTTAT 59.750 44.000 8.25 0.00 0.00 1.73
313 314 4.594920 GGATGAGGATGGTGGAAGATCTTA 59.405 45.833 8.25 0.00 0.00 2.10
314 315 3.393941 GGATGAGGATGGTGGAAGATCTT 59.606 47.826 7.95 7.95 0.00 2.40
315 316 2.978278 GGATGAGGATGGTGGAAGATCT 59.022 50.000 0.00 0.00 0.00 2.75
316 317 2.039613 GGGATGAGGATGGTGGAAGATC 59.960 54.545 0.00 0.00 0.00 2.75
317 318 2.061061 GGGATGAGGATGGTGGAAGAT 58.939 52.381 0.00 0.00 0.00 2.40
318 319 1.511613 GGGATGAGGATGGTGGAAGA 58.488 55.000 0.00 0.00 0.00 2.87
319 320 0.107456 CGGGATGAGGATGGTGGAAG 59.893 60.000 0.00 0.00 0.00 3.46
320 321 0.620410 ACGGGATGAGGATGGTGGAA 60.620 55.000 0.00 0.00 0.00 3.53
321 322 1.002921 ACGGGATGAGGATGGTGGA 59.997 57.895 0.00 0.00 0.00 4.02
322 323 1.146930 CACGGGATGAGGATGGTGG 59.853 63.158 0.00 0.00 0.00 4.61
323 324 1.146930 CCACGGGATGAGGATGGTG 59.853 63.158 0.00 0.00 0.00 4.17
324 325 0.031515 TACCACGGGATGAGGATGGT 60.032 55.000 0.00 0.00 45.56 3.55
325 326 0.681733 CTACCACGGGATGAGGATGG 59.318 60.000 0.00 0.00 36.46 3.51
326 327 1.069204 CACTACCACGGGATGAGGATG 59.931 57.143 0.00 0.00 31.87 3.51
327 328 1.063190 TCACTACCACGGGATGAGGAT 60.063 52.381 0.00 0.00 31.87 3.24
328 329 0.333652 TCACTACCACGGGATGAGGA 59.666 55.000 0.00 0.00 31.87 3.71
329 330 1.414158 ATCACTACCACGGGATGAGG 58.586 55.000 0.00 0.00 0.00 3.86
330 331 2.483714 CCAATCACTACCACGGGATGAG 60.484 54.545 0.00 0.00 0.00 2.90
331 332 1.484653 CCAATCACTACCACGGGATGA 59.515 52.381 0.00 0.00 0.00 2.92
332 333 1.953559 CCAATCACTACCACGGGATG 58.046 55.000 0.00 0.00 0.00 3.51
333 334 0.180406 GCCAATCACTACCACGGGAT 59.820 55.000 0.00 0.00 0.00 3.85
334 335 1.195442 TGCCAATCACTACCACGGGA 61.195 55.000 0.00 0.00 0.00 5.14
335 336 0.107214 ATGCCAATCACTACCACGGG 60.107 55.000 0.00 0.00 0.00 5.28
336 337 1.401552 CAATGCCAATCACTACCACGG 59.598 52.381 0.00 0.00 0.00 4.94
337 338 1.401552 CCAATGCCAATCACTACCACG 59.598 52.381 0.00 0.00 0.00 4.94
338 339 1.134946 GCCAATGCCAATCACTACCAC 59.865 52.381 0.00 0.00 0.00 4.16
339 340 1.272369 TGCCAATGCCAATCACTACCA 60.272 47.619 0.00 0.00 36.33 3.25
340 341 1.406539 CTGCCAATGCCAATCACTACC 59.593 52.381 0.00 0.00 36.33 3.18
341 342 2.357009 CTCTGCCAATGCCAATCACTAC 59.643 50.000 0.00 0.00 36.33 2.73
342 343 2.646930 CTCTGCCAATGCCAATCACTA 58.353 47.619 0.00 0.00 36.33 2.74
343 344 1.471119 CTCTGCCAATGCCAATCACT 58.529 50.000 0.00 0.00 36.33 3.41
344 345 0.458669 CCTCTGCCAATGCCAATCAC 59.541 55.000 0.00 0.00 36.33 3.06
345 346 0.685131 CCCTCTGCCAATGCCAATCA 60.685 55.000 0.00 0.00 36.33 2.57
346 347 2.024590 GCCCTCTGCCAATGCCAATC 62.025 60.000 0.00 0.00 36.33 2.67
347 348 2.062177 GCCCTCTGCCAATGCCAAT 61.062 57.895 0.00 0.00 36.33 3.16
348 349 2.681064 GCCCTCTGCCAATGCCAA 60.681 61.111 0.00 0.00 36.33 4.52
349 350 3.305619 ATGCCCTCTGCCAATGCCA 62.306 57.895 0.00 0.00 40.16 4.92
350 351 2.443390 ATGCCCTCTGCCAATGCC 60.443 61.111 0.00 0.00 40.16 4.40
351 352 2.056223 ACATGCCCTCTGCCAATGC 61.056 57.895 0.00 0.00 40.16 3.56
352 353 1.672854 CCACATGCCCTCTGCCAATG 61.673 60.000 0.00 0.00 40.16 2.82
353 354 1.380785 CCACATGCCCTCTGCCAAT 60.381 57.895 0.00 0.00 40.16 3.16
354 355 2.036098 CCACATGCCCTCTGCCAA 59.964 61.111 0.00 0.00 40.16 4.52
355 356 2.934932 TCCACATGCCCTCTGCCA 60.935 61.111 0.00 0.00 40.16 4.92
356 357 2.124403 CTCCACATGCCCTCTGCC 60.124 66.667 0.00 0.00 40.16 4.85
357 358 2.827642 GCTCCACATGCCCTCTGC 60.828 66.667 0.00 0.00 41.77 4.26
358 359 0.747283 GAAGCTCCACATGCCCTCTG 60.747 60.000 0.00 0.00 0.00 3.35
359 360 1.203441 TGAAGCTCCACATGCCCTCT 61.203 55.000 0.00 0.00 0.00 3.69
360 361 0.747283 CTGAAGCTCCACATGCCCTC 60.747 60.000 0.00 0.00 0.00 4.30
361 362 1.302285 CTGAAGCTCCACATGCCCT 59.698 57.895 0.00 0.00 0.00 5.19
362 363 2.413142 GCTGAAGCTCCACATGCCC 61.413 63.158 0.00 0.00 38.21 5.36
363 364 2.413142 GGCTGAAGCTCCACATGCC 61.413 63.158 1.74 0.00 41.70 4.40
364 365 1.246056 TTGGCTGAAGCTCCACATGC 61.246 55.000 1.74 0.00 41.70 4.06
365 366 0.809385 CTTGGCTGAAGCTCCACATG 59.191 55.000 1.74 0.00 41.70 3.21
366 367 0.323178 CCTTGGCTGAAGCTCCACAT 60.323 55.000 1.74 0.00 41.70 3.21
367 368 1.073722 CCTTGGCTGAAGCTCCACA 59.926 57.895 1.74 0.00 41.70 4.17
368 369 2.338785 GCCTTGGCTGAAGCTCCAC 61.339 63.158 4.11 0.00 41.70 4.02
369 370 2.034687 GCCTTGGCTGAAGCTCCA 59.965 61.111 4.11 0.00 41.70 3.86
370 371 2.753446 GGCCTTGGCTGAAGCTCC 60.753 66.667 11.71 0.00 41.70 4.70
371 372 1.593296 CTTGGCCTTGGCTGAAGCTC 61.593 60.000 11.71 0.00 41.70 4.09
372 373 1.605738 CTTGGCCTTGGCTGAAGCT 60.606 57.895 11.71 0.00 41.70 3.74
373 374 0.609131 TACTTGGCCTTGGCTGAAGC 60.609 55.000 11.71 0.00 41.14 3.86
374 375 2.134789 ATACTTGGCCTTGGCTGAAG 57.865 50.000 11.71 14.79 0.00 3.02
375 376 2.170166 CAATACTTGGCCTTGGCTGAA 58.830 47.619 11.71 4.34 0.00 3.02
376 377 1.075374 ACAATACTTGGCCTTGGCTGA 59.925 47.619 11.71 0.00 34.12 4.26
377 378 1.203052 CACAATACTTGGCCTTGGCTG 59.797 52.381 11.71 2.68 34.12 4.85
378 379 1.549203 CACAATACTTGGCCTTGGCT 58.451 50.000 11.71 0.00 34.12 4.75
379 380 0.108662 GCACAATACTTGGCCTTGGC 60.109 55.000 3.32 2.49 34.12 4.52
419 420 3.081710 TGTCGTCCAGAACATCCTAGA 57.918 47.619 0.00 0.00 0.00 2.43
444 445 4.766375 ACCATAGTTGTCCACTTTATCGG 58.234 43.478 0.00 0.00 36.88 4.18
493 494 1.996786 GCCATGCATCGTTGAGTGGG 61.997 60.000 15.20 0.00 32.52 4.61
496 497 1.002257 TGGCCATGCATCGTTGAGT 60.002 52.632 0.00 0.00 0.00 3.41
525 526 5.176592 ACTTTAACTCGCTAGATTCCCAAC 58.823 41.667 0.00 0.00 0.00 3.77
542 543 2.967201 TGACAGAACCGGGAGACTTTAA 59.033 45.455 6.32 0.00 0.00 1.52
592 593 6.145371 CGAAGAAGAAGAAGAAGAAGGTGAAG 59.855 42.308 0.00 0.00 0.00 3.02
605 606 5.683876 ATTCTCATCCCGAAGAAGAAGAA 57.316 39.130 0.00 0.00 0.00 2.52
606 607 6.239430 CCATATTCTCATCCCGAAGAAGAAGA 60.239 42.308 0.00 0.00 0.00 2.87
607 608 5.931146 CCATATTCTCATCCCGAAGAAGAAG 59.069 44.000 0.00 0.00 0.00 2.85
608 609 5.366768 ACCATATTCTCATCCCGAAGAAGAA 59.633 40.000 0.00 0.00 0.00 2.52
609 610 4.901849 ACCATATTCTCATCCCGAAGAAGA 59.098 41.667 0.00 0.00 0.00 2.87
610 611 5.011533 AGACCATATTCTCATCCCGAAGAAG 59.988 44.000 0.00 0.00 0.00 2.85
615 616 4.262036 CGAAAGACCATATTCTCATCCCGA 60.262 45.833 0.00 0.00 0.00 5.14
628 629 3.417069 TGGTGATGAACGAAAGACCAT 57.583 42.857 0.00 0.00 0.00 3.55
668 669 0.179169 GTAGTGACCGAGAAGTCGCC 60.179 60.000 1.84 0.00 46.27 5.54
684 685 2.347452 CGAGGTAACATTGTTGGCGTAG 59.653 50.000 12.30 3.99 41.41 3.51
686 687 1.153353 CGAGGTAACATTGTTGGCGT 58.847 50.000 12.30 6.57 41.41 5.68
688 689 0.170339 GCCGAGGTAACATTGTTGGC 59.830 55.000 12.30 11.49 41.41 4.52
708 709 3.077556 CACCCTAGGCACCGAGCT 61.078 66.667 2.05 0.00 44.79 4.09
709 710 2.854187 GAACACCCTAGGCACCGAGC 62.854 65.000 2.05 0.00 44.65 5.03
710 711 1.218316 GAACACCCTAGGCACCGAG 59.782 63.158 2.05 0.00 0.00 4.63
711 712 2.288025 GGAACACCCTAGGCACCGA 61.288 63.158 2.05 0.00 0.00 4.69
712 713 2.119484 TTGGAACACCCTAGGCACCG 62.119 60.000 2.05 0.00 39.29 4.94
715 716 2.916934 AGTATTTGGAACACCCTAGGCA 59.083 45.455 2.05 0.00 39.29 4.75
716 717 3.542648 GAGTATTTGGAACACCCTAGGC 58.457 50.000 2.05 0.00 39.29 3.93
723 1079 2.007608 GCCTCCGAGTATTTGGAACAC 58.992 52.381 0.00 0.00 39.29 3.32
725 1081 1.134907 TCGCCTCCGAGTATTTGGAAC 60.135 52.381 0.00 0.00 38.82 3.62
726 1082 1.134907 GTCGCCTCCGAGTATTTGGAA 60.135 52.381 0.00 0.00 45.38 3.53
733 1089 0.738975 CTTGATGTCGCCTCCGAGTA 59.261 55.000 0.00 0.00 45.38 2.59
735 1091 1.880340 GCTTGATGTCGCCTCCGAG 60.880 63.158 0.00 0.00 45.38 4.63
742 1098 1.658095 GAACAGAGAGCTTGATGTCGC 59.342 52.381 0.00 0.00 0.00 5.19
752 1108 3.137533 GCTATTCCCATGAACAGAGAGC 58.862 50.000 0.00 0.00 32.13 4.09
756 1112 2.905075 CGTGCTATTCCCATGAACAGA 58.095 47.619 0.00 0.00 32.13 3.41
757 1113 1.331756 GCGTGCTATTCCCATGAACAG 59.668 52.381 0.00 0.00 32.13 3.16
789 1145 1.075482 ACGTTCCTCACCCTACCGA 59.925 57.895 0.00 0.00 0.00 4.69
798 1154 0.756294 ACACATGTCCACGTTCCTCA 59.244 50.000 0.00 0.00 0.00 3.86
799 1155 1.531149 CAACACATGTCCACGTTCCTC 59.469 52.381 0.00 0.00 0.00 3.71
800 1156 1.134220 ACAACACATGTCCACGTTCCT 60.134 47.619 0.00 0.00 37.96 3.36
802 1158 2.867368 TGTACAACACATGTCCACGTTC 59.133 45.455 0.00 0.00 42.70 3.95
804 1160 2.605837 TGTACAACACATGTCCACGT 57.394 45.000 0.00 0.00 42.70 4.49
863 1262 0.469917 AAGGATGCATGTAGTCCCGG 59.530 55.000 2.46 0.00 32.31 5.73
886 1285 1.169661 CGCTAGCGAGGATCCTCTGT 61.170 60.000 33.70 24.07 42.83 3.41
891 1290 2.355244 GCACGCTAGCGAGGATCC 60.355 66.667 41.33 18.00 42.83 3.36
948 1347 1.533033 TGCTGGGTTCAGTCGAGGA 60.533 57.895 0.00 0.00 42.78 3.71
1006 1408 1.159905 GGGTTTGGGGTGGGGATTT 59.840 57.895 0.00 0.00 0.00 2.17
1027 1429 1.857638 AAGGGAAGCAGGAGGAAGGC 61.858 60.000 0.00 0.00 0.00 4.35
1038 1440 2.028567 CGATAGGAGGATGAAGGGAAGC 60.029 54.545 0.00 0.00 0.00 3.86
1041 1443 3.834813 CAATCGATAGGAGGATGAAGGGA 59.165 47.826 0.00 0.00 0.00 4.20
1045 1447 2.303022 GGGCAATCGATAGGAGGATGAA 59.697 50.000 0.00 0.00 0.00 2.57
1291 1693 1.557371 GACAAAGGAAGGGAGGAGGAG 59.443 57.143 0.00 0.00 0.00 3.69
1292 1694 1.152271 AGACAAAGGAAGGGAGGAGGA 59.848 52.381 0.00 0.00 0.00 3.71
1491 1893 0.039180 TGTAAGGCACGGAGGAGAGA 59.961 55.000 0.00 0.00 0.00 3.10
1528 1930 2.821366 TCGGTAGTCCTCGGCGAC 60.821 66.667 4.99 0.00 0.00 5.19
2121 2523 4.136796 TCTCAAACAAGAACCTGGATGTG 58.863 43.478 0.00 0.00 0.00 3.21
2160 2562 0.888619 TGGAGTCCAAGTACTCGCTG 59.111 55.000 10.20 0.00 45.69 5.18
2298 2700 6.535508 GGTACCTATCTAACAACAGAAGCTTG 59.464 42.308 2.10 0.00 0.00 4.01
2406 2808 2.945008 AGTCATTGTAATCACATGCCGG 59.055 45.455 0.00 0.00 33.76 6.13
2415 2817 8.845648 CGATCGAGATTTCTAGTCATTGTAATC 58.154 37.037 10.26 0.00 0.00 1.75
2526 2928 2.805671 CGTGCTCCAAGTGTAATCAACA 59.194 45.455 0.00 0.00 35.06 3.33
2547 2949 1.815817 GCCCAAATGGTGTGTGTCCC 61.816 60.000 0.00 0.00 36.04 4.46
2553 2955 1.178534 AGAACGGCCCAAATGGTGTG 61.179 55.000 0.00 0.00 36.04 3.82
2868 3270 2.633967 CAGCTCCTGAGAAGCCTGATAT 59.366 50.000 0.00 0.00 32.44 1.63
2952 3354 7.081349 CCAAAAAGAAACCAAAAACAAAGACC 58.919 34.615 0.00 0.00 0.00 3.85
2976 3378 5.678955 AACTGTCCCTCTTAGAATACACC 57.321 43.478 0.00 0.00 0.00 4.16
2994 3396 5.514274 TCCTTTTGCTCCTAAACAAACTG 57.486 39.130 0.00 0.00 35.60 3.16
3064 3466 0.179062 ATCGCATCAGGGTGAAGCTC 60.179 55.000 2.99 0.00 38.78 4.09
3414 3817 7.551262 ACTTGACATCTTGTAACTTGTAACACA 59.449 33.333 0.00 0.00 0.00 3.72
3431 3834 6.860023 CCAGAATGTGAAAAGAACTTGACATC 59.140 38.462 0.00 0.00 0.00 3.06
3619 4218 4.957759 TTATTCAGGCTTTCGGCTTAAC 57.042 40.909 0.00 0.00 44.74 2.01
3720 4319 1.320344 ACAATGCTCGCGGACTAGGA 61.320 55.000 6.13 0.00 0.00 2.94
3894 4493 1.203001 ACACCCCGTTTTGACCATCAT 60.203 47.619 0.00 0.00 0.00 2.45
4026 4625 3.055819 GCTCAGGGTAAGTGACTCATCAA 60.056 47.826 0.00 0.00 36.31 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.