Multiple sequence alignment - TraesCS7D01G356500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G356500 chr7D 100.000 4694 0 0 1 4694 459790414 459785721 0.000000e+00 8669.0
1 TraesCS7D01G356500 chr7D 88.996 3926 362 30 57 3951 459752913 459749027 0.000000e+00 4793.0
2 TraesCS7D01G356500 chr7D 83.276 3211 500 26 31 3230 460279574 460282758 0.000000e+00 2920.0
3 TraesCS7D01G356500 chr7D 92.135 356 20 2 4339 4694 459749024 459748677 3.260000e-136 496.0
4 TraesCS7D01G356500 chr7D 83.585 463 61 8 250 712 460273432 460273879 2.020000e-113 420.0
5 TraesCS7D01G356500 chr7B 95.767 3685 118 16 344 4009 482078302 482074637 0.000000e+00 5906.0
6 TraesCS7D01G356500 chr7B 88.776 4018 385 35 5 3995 481857213 481853235 0.000000e+00 4861.0
7 TraesCS7D01G356500 chr7B 83.427 3210 495 26 31 3230 482684222 482687404 0.000000e+00 2946.0
8 TraesCS7D01G356500 chr7B 86.813 637 42 20 4072 4694 482074630 482074022 0.000000e+00 673.0
9 TraesCS7D01G356500 chr7B 87.131 474 37 9 4227 4694 481853021 481852566 2.500000e-142 516.0
10 TraesCS7D01G356500 chr7B 90.184 163 15 1 4072 4234 481853210 481853049 1.320000e-50 211.0
11 TraesCS7D01G356500 chr7A 90.440 2908 251 15 1133 4018 539928022 539930924 0.000000e+00 3805.0
12 TraesCS7D01G356500 chr7A 82.898 3216 507 30 31 3233 539326117 539322932 0.000000e+00 2852.0
13 TraesCS7D01G356500 chr7A 98.893 1265 14 0 1739 3003 539848157 539849421 0.000000e+00 2259.0
14 TraesCS7D01G356500 chr7A 91.260 778 47 8 3116 3873 539849420 539850196 0.000000e+00 1040.0
15 TraesCS7D01G356500 chr7A 81.712 1028 155 16 67 1090 539926861 539927859 0.000000e+00 826.0
16 TraesCS7D01G356500 chr7A 85.596 604 51 20 4082 4665 539930926 539931513 6.720000e-168 601.0
17 TraesCS7D01G356500 chr7A 89.136 359 30 3 4336 4694 539850515 539850864 5.580000e-119 438.0
18 TraesCS7D01G356500 chr2B 79.419 2993 553 47 288 3242 784188712 784191679 0.000000e+00 2056.0
19 TraesCS7D01G356500 chr2D 78.068 2982 593 33 280 3222 638724249 638727208 0.000000e+00 1827.0
20 TraesCS7D01G356500 chrUn 93.651 63 4 0 4013 4075 115400246 115400308 1.390000e-15 95.3
21 TraesCS7D01G356500 chr5B 92.424 66 5 0 4013 4078 214942946 214942881 1.390000e-15 95.3
22 TraesCS7D01G356500 chr6A 92.424 66 4 1 4012 4076 11587233 11587298 5.000000e-15 93.5
23 TraesCS7D01G356500 chr6D 87.654 81 5 2 4008 4084 277647142 277647221 6.470000e-14 89.8
24 TraesCS7D01G356500 chr5A 90.909 66 6 0 4013 4078 236879316 236879251 6.470000e-14 89.8
25 TraesCS7D01G356500 chr3B 92.063 63 5 0 4017 4079 395706415 395706353 6.470000e-14 89.8
26 TraesCS7D01G356500 chr6B 88.889 72 6 2 4006 4075 18596809 18596738 2.330000e-13 87.9
27 TraesCS7D01G356500 chr6B 86.420 81 6 2 4008 4084 439356528 439356607 3.010000e-12 84.2
28 TraesCS7D01G356500 chr1D 89.706 68 6 1 4015 4082 343363439 343363373 8.370000e-13 86.1
29 TraesCS7D01G356500 chr4A 80.583 103 20 0 413 515 615107301 615107199 3.890000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G356500 chr7D 459785721 459790414 4693 True 8669.000000 8669 100.000000 1 4694 1 chr7D.!!$R1 4693
1 TraesCS7D01G356500 chr7D 460279574 460282758 3184 False 2920.000000 2920 83.276000 31 3230 1 chr7D.!!$F2 3199
2 TraesCS7D01G356500 chr7D 459748677 459752913 4236 True 2644.500000 4793 90.565500 57 4694 2 chr7D.!!$R2 4637
3 TraesCS7D01G356500 chr7B 482074022 482078302 4280 True 3289.500000 5906 91.290000 344 4694 2 chr7B.!!$R2 4350
4 TraesCS7D01G356500 chr7B 482684222 482687404 3182 False 2946.000000 2946 83.427000 31 3230 1 chr7B.!!$F1 3199
5 TraesCS7D01G356500 chr7B 481852566 481857213 4647 True 1862.666667 4861 88.697000 5 4694 3 chr7B.!!$R1 4689
6 TraesCS7D01G356500 chr7A 539322932 539326117 3185 True 2852.000000 2852 82.898000 31 3233 1 chr7A.!!$R1 3202
7 TraesCS7D01G356500 chr7A 539926861 539931513 4652 False 1744.000000 3805 85.916000 67 4665 3 chr7A.!!$F2 4598
8 TraesCS7D01G356500 chr7A 539848157 539850864 2707 False 1245.666667 2259 93.096333 1739 4694 3 chr7A.!!$F1 2955
9 TraesCS7D01G356500 chr2B 784188712 784191679 2967 False 2056.000000 2056 79.419000 288 3242 1 chr2B.!!$F1 2954
10 TraesCS7D01G356500 chr2D 638724249 638727208 2959 False 1827.000000 1827 78.068000 280 3222 1 chr2D.!!$F1 2942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 132 0.033796 TCGTAGGTCCGTTCCTCCAT 60.034 55.000 0.0 0.0 38.86 3.41 F
136 138 0.175989 GTCCGTTCCTCCATGAGACC 59.824 60.000 0.0 0.0 0.00 3.85 F
143 145 0.179134 CCTCCATGAGACCGTCGAAC 60.179 60.000 0.0 0.0 0.00 3.95 F
251 253 0.394762 GCTCCCTTGTCCATGCATCA 60.395 55.000 0.0 0.0 0.00 3.07 F
533 544 1.001974 CCCAACAATCGACTCAGTGGA 59.998 52.381 0.0 0.0 0.00 4.02 F
3348 3526 0.250513 AAATCTCCACTGAGGGCGAC 59.749 55.000 0.0 0.0 39.23 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1677 3.525199 AGTTGGTTCCAGCCTAGATTCAT 59.475 43.478 2.21 0.0 0.00 2.57 R
2228 2386 3.017048 TGATGCCTCCCAAACTTATGG 57.983 47.619 0.00 0.0 40.35 2.74 R
3051 3218 1.293963 GCTTCAGATCGCAGTGTGCA 61.294 55.000 0.00 0.0 45.36 4.57 R
3114 3281 3.832490 GGAACTTAGCCAACCCAAAATCT 59.168 43.478 0.00 0.0 0.00 2.40 R
3384 3562 0.320073 CGGTTGGACGCTTTCCTGTA 60.320 55.000 3.14 0.0 46.10 2.74 R
4394 4898 0.320596 AACATTGCCATGCCAAACGG 60.321 50.000 0.00 0.0 33.05 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.126189 GTGGAGTGGCCGTCGTAC 60.126 66.667 0.00 0.00 40.66 3.67
25 26 3.376078 TGGAGTGGCCGTCGTACC 61.376 66.667 0.00 1.98 40.66 3.34
43 44 4.927782 TGCTGGTGCCGCGAAAGT 62.928 61.111 8.23 0.00 38.71 2.66
78 79 2.457598 CTACAGCTCCCCAGTGAGTTA 58.542 52.381 0.00 0.00 34.74 2.24
89 91 3.012518 CCAGTGAGTTATCCTTGCCTTG 58.987 50.000 0.00 0.00 0.00 3.61
96 98 4.469657 AGTTATCCTTGCCTTGTTGTTCA 58.530 39.130 0.00 0.00 0.00 3.18
104 106 1.151668 CCTTGTTGTTCAGAGAGCCG 58.848 55.000 0.00 0.00 0.00 5.52
106 108 0.250295 TTGTTGTTCAGAGAGCCGGG 60.250 55.000 2.18 0.00 0.00 5.73
115 117 1.748122 GAGAGCCGGGTCAGTCGTA 60.748 63.158 33.52 0.00 0.00 3.43
130 132 0.033796 TCGTAGGTCCGTTCCTCCAT 60.034 55.000 0.00 0.00 38.86 3.41
133 135 1.409427 GTAGGTCCGTTCCTCCATGAG 59.591 57.143 0.00 0.00 38.86 2.90
136 138 0.175989 GTCCGTTCCTCCATGAGACC 59.824 60.000 0.00 0.00 0.00 3.85
143 145 0.179134 CCTCCATGAGACCGTCGAAC 60.179 60.000 0.00 0.00 0.00 3.95
144 146 0.523546 CTCCATGAGACCGTCGAACG 60.524 60.000 0.00 0.00 42.11 3.95
153 155 2.640989 CGTCGAACGGTCAGACCA 59.359 61.111 20.13 0.00 38.47 4.02
154 156 1.211969 CGTCGAACGGTCAGACCAT 59.788 57.895 20.13 7.51 38.47 3.55
155 157 1.071019 CGTCGAACGGTCAGACCATG 61.071 60.000 20.13 6.67 38.47 3.66
156 158 0.736325 GTCGAACGGTCAGACCATGG 60.736 60.000 20.13 11.19 38.47 3.66
157 159 1.447838 CGAACGGTCAGACCATGGG 60.448 63.158 20.13 5.56 38.47 4.00
158 160 1.677552 GAACGGTCAGACCATGGGT 59.322 57.895 20.13 6.23 38.47 4.51
159 161 0.673644 GAACGGTCAGACCATGGGTG 60.674 60.000 20.13 13.28 38.47 4.61
184 186 9.656323 TGGTACTACAAAATATATGTCTCCTCT 57.344 33.333 0.00 0.00 32.27 3.69
209 211 1.216710 GGGCACTCTCAGTTCCTCG 59.783 63.158 0.00 0.00 31.88 4.63
217 219 2.245438 CTCAGTTCCTCGCTTCCCCC 62.245 65.000 0.00 0.00 0.00 5.40
219 221 3.387947 GTTCCTCGCTTCCCCCGA 61.388 66.667 0.00 0.00 0.00 5.14
221 223 2.731571 TTCCTCGCTTCCCCCGATG 61.732 63.158 0.00 0.00 33.83 3.84
227 229 2.409870 GCTTCCCCCGATGCTTGTG 61.410 63.158 0.00 0.00 36.49 3.33
251 253 0.394762 GCTCCCTTGTCCATGCATCA 60.395 55.000 0.00 0.00 0.00 3.07
253 255 2.662866 CTCCCTTGTCCATGCATCATT 58.337 47.619 0.00 0.00 0.00 2.57
255 257 3.819337 CTCCCTTGTCCATGCATCATTAG 59.181 47.826 0.00 0.00 0.00 1.73
256 258 2.889045 CCCTTGTCCATGCATCATTAGG 59.111 50.000 0.00 0.23 0.00 2.69
257 259 3.559069 CCTTGTCCATGCATCATTAGGT 58.441 45.455 0.00 0.00 0.00 3.08
259 261 2.300433 TGTCCATGCATCATTAGGTGC 58.700 47.619 0.00 0.00 41.61 5.01
261 263 3.136260 TGTCCATGCATCATTAGGTGCTA 59.864 43.478 0.00 0.00 41.78 3.49
274 276 3.612251 TGCTACTACGGCACTCCC 58.388 61.111 0.00 0.00 34.56 4.30
278 280 1.739371 GCTACTACGGCACTCCCAAAG 60.739 57.143 0.00 0.00 0.00 2.77
286 288 2.743183 CGGCACTCCCAAAGGATTCTAG 60.743 54.545 0.00 0.00 42.93 2.43
328 333 2.941720 GCTGCCTTAAACTCCATCTCAG 59.058 50.000 0.00 0.00 0.00 3.35
333 338 4.383118 GCCTTAAACTCCATCTCAGCAGTA 60.383 45.833 0.00 0.00 0.00 2.74
389 400 1.598130 GCACTTCTGCGGTTGGTCT 60.598 57.895 0.00 0.00 32.44 3.85
523 534 1.105457 ATGCACATCCCCAACAATCG 58.895 50.000 0.00 0.00 0.00 3.34
533 544 1.001974 CCCAACAATCGACTCAGTGGA 59.998 52.381 0.00 0.00 0.00 4.02
593 604 4.648651 GGTACCTTAACCTCAGCTCAAAA 58.351 43.478 4.06 0.00 36.53 2.44
788 799 4.116328 TCGCTCCGCAACCTCTCG 62.116 66.667 0.00 0.00 0.00 4.04
985 996 3.181456 GGAGAGATACCTTCTGCATTGCT 60.181 47.826 10.49 0.00 33.74 3.91
986 997 4.450053 GAGAGATACCTTCTGCATTGCTT 58.550 43.478 10.49 0.00 33.74 3.91
987 998 5.453903 GGAGAGATACCTTCTGCATTGCTTA 60.454 44.000 10.49 0.00 33.74 3.09
988 999 5.994250 AGAGATACCTTCTGCATTGCTTAA 58.006 37.500 10.49 3.38 33.74 1.85
989 1000 5.819901 AGAGATACCTTCTGCATTGCTTAAC 59.180 40.000 10.49 0.00 33.74 2.01
990 1001 5.500234 AGATACCTTCTGCATTGCTTAACA 58.500 37.500 10.49 0.00 31.79 2.41
991 1002 3.923017 ACCTTCTGCATTGCTTAACAC 57.077 42.857 10.49 0.00 0.00 3.32
1116 1133 4.885413 TGCAATCAAACAATCTTTCTGGG 58.115 39.130 0.00 0.00 0.00 4.45
1225 1383 7.728532 TGAGTATAGGCAATATTCTGTACCTGA 59.271 37.037 7.18 0.00 30.94 3.86
1226 1384 8.128322 AGTATAGGCAATATTCTGTACCTGAG 57.872 38.462 7.18 0.00 30.94 3.35
1519 1677 7.081007 TGGGACTCTTCCTAGTCTAGTAGATA 58.919 42.308 2.51 0.00 44.42 1.98
1761 1919 2.092211 CAGACGTCTTTACATGGAACGC 59.908 50.000 17.26 0.00 0.00 4.84
2133 2291 8.917088 CCACTGAATATTTCCCATAATCAACTT 58.083 33.333 0.00 0.00 0.00 2.66
3051 3218 3.456380 AACCAATGTGTGCCTCCTATT 57.544 42.857 0.00 0.00 0.00 1.73
3114 3281 4.634703 ATGGGCGCACGTGTTGGA 62.635 61.111 18.38 0.00 0.00 3.53
3348 3526 0.250513 AAATCTCCACTGAGGGCGAC 59.749 55.000 0.00 0.00 39.23 5.19
3359 3537 1.066605 TGAGGGCGACGTATTTAGCTC 59.933 52.381 0.00 0.00 0.00 4.09
3384 3562 6.656902 TGGAGTCATCATCTTAGAAATGCTT 58.343 36.000 0.00 0.00 0.00 3.91
3505 3683 6.783482 AGACCCTAGAATAGTTCCAGGTTATC 59.217 42.308 0.00 0.17 36.92 1.75
3509 3687 5.793030 AGAATAGTTCCAGGTTATCGAGG 57.207 43.478 0.00 0.00 0.00 4.63
3529 3707 0.401356 TGAAGGTGAAGATGCAGGCA 59.599 50.000 0.00 0.00 0.00 4.75
3595 3779 2.187073 CTCATGGAGCTTGGGTTGC 58.813 57.895 0.00 0.00 0.00 4.17
3606 3790 2.595463 GGGTTGCTGTGCTCTGCA 60.595 61.111 15.21 15.21 44.44 4.41
3609 3793 1.573436 GTTGCTGTGCTCTGCAGAC 59.427 57.895 13.74 10.67 46.04 3.51
3648 3832 5.707298 GCCAACTATGCAGGACATATACAAT 59.293 40.000 0.00 0.00 40.48 2.71
3685 3869 7.843490 ATCAAAGAATCATTTTCAGCATTGG 57.157 32.000 0.00 0.00 0.00 3.16
3714 3901 6.363167 TGAGGAAAAGGAAAATGCATGATT 57.637 33.333 0.00 0.00 0.00 2.57
3727 3914 6.452494 AATGCATGATTCCTTGAAGAAGAG 57.548 37.500 0.00 0.00 0.00 2.85
3794 3994 1.352352 TGAAGCTTTTCCTAGCCTGCT 59.648 47.619 0.00 0.00 42.20 4.24
3808 4008 1.124477 CCTGCTCCTCCCCTGTATCC 61.124 65.000 0.00 0.00 0.00 2.59
3856 4057 2.151202 CCTTGCGACACCACTGTAAAT 58.849 47.619 0.00 0.00 0.00 1.40
3858 4059 2.831685 TGCGACACCACTGTAAATCT 57.168 45.000 0.00 0.00 0.00 2.40
3863 4064 3.060363 CGACACCACTGTAAATCTTACGC 59.940 47.826 0.00 0.00 0.00 4.42
3865 4066 3.744426 ACACCACTGTAAATCTTACGCAC 59.256 43.478 0.00 0.00 0.00 5.34
3938 4388 7.982761 ATTGTGTATGCAAATTTCAACCAAT 57.017 28.000 0.00 0.00 31.63 3.16
3964 4416 8.815912 TCTAGCTATATGGAATAATGTTCAGCA 58.184 33.333 0.00 0.00 29.06 4.41
3965 4417 7.678947 AGCTATATGGAATAATGTTCAGCAC 57.321 36.000 0.00 0.00 29.06 4.40
3970 4422 8.523915 ATATGGAATAATGTTCAGCACTGAAA 57.476 30.769 14.37 6.26 40.94 2.69
4018 4470 9.971922 TTTCTAACACCTAACAAACTAGTACTC 57.028 33.333 0.00 0.00 0.00 2.59
4019 4471 8.930846 TCTAACACCTAACAAACTAGTACTCT 57.069 34.615 0.00 0.00 0.00 3.24
4020 4472 9.007901 TCTAACACCTAACAAACTAGTACTCTC 57.992 37.037 0.00 0.00 0.00 3.20
4021 4473 7.836479 AACACCTAACAAACTAGTACTCTCT 57.164 36.000 0.00 0.00 0.00 3.10
4022 4474 7.451501 ACACCTAACAAACTAGTACTCTCTC 57.548 40.000 0.00 0.00 0.00 3.20
4023 4475 6.433716 ACACCTAACAAACTAGTACTCTCTCC 59.566 42.308 0.00 0.00 0.00 3.71
4024 4476 5.647225 ACCTAACAAACTAGTACTCTCTCCG 59.353 44.000 0.00 0.00 0.00 4.63
4025 4477 5.879223 CCTAACAAACTAGTACTCTCTCCGA 59.121 44.000 0.00 0.00 0.00 4.55
4026 4478 6.543100 CCTAACAAACTAGTACTCTCTCCGAT 59.457 42.308 0.00 0.00 0.00 4.18
4027 4479 6.439675 AACAAACTAGTACTCTCTCCGATC 57.560 41.667 0.00 0.00 0.00 3.69
4028 4480 4.883006 ACAAACTAGTACTCTCTCCGATCC 59.117 45.833 0.00 0.00 0.00 3.36
4029 4481 4.774660 AACTAGTACTCTCTCCGATCCA 57.225 45.455 0.00 0.00 0.00 3.41
4030 4482 4.774660 ACTAGTACTCTCTCCGATCCAA 57.225 45.455 0.00 0.00 0.00 3.53
4031 4483 5.113446 ACTAGTACTCTCTCCGATCCAAA 57.887 43.478 0.00 0.00 0.00 3.28
4032 4484 5.507637 ACTAGTACTCTCTCCGATCCAAAA 58.492 41.667 0.00 0.00 0.00 2.44
4033 4485 6.130569 ACTAGTACTCTCTCCGATCCAAAAT 58.869 40.000 0.00 0.00 0.00 1.82
4034 4486 7.288560 ACTAGTACTCTCTCCGATCCAAAATA 58.711 38.462 0.00 0.00 0.00 1.40
4035 4487 7.778853 ACTAGTACTCTCTCCGATCCAAAATAA 59.221 37.037 0.00 0.00 0.00 1.40
4036 4488 7.045126 AGTACTCTCTCCGATCCAAAATAAG 57.955 40.000 0.00 0.00 0.00 1.73
4037 4489 5.941555 ACTCTCTCCGATCCAAAATAAGT 57.058 39.130 0.00 0.00 0.00 2.24
4038 4490 5.665459 ACTCTCTCCGATCCAAAATAAGTG 58.335 41.667 0.00 0.00 0.00 3.16
4039 4491 5.187967 ACTCTCTCCGATCCAAAATAAGTGT 59.812 40.000 0.00 0.00 0.00 3.55
4040 4492 5.661458 TCTCTCCGATCCAAAATAAGTGTC 58.339 41.667 0.00 0.00 0.00 3.67
4041 4493 4.430007 TCTCCGATCCAAAATAAGTGTCG 58.570 43.478 0.00 0.00 0.00 4.35
4042 4494 2.933906 TCCGATCCAAAATAAGTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
4043 4495 2.675844 CCGATCCAAAATAAGTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
4044 4496 3.242413 CCGATCCAAAATAAGTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
4045 4497 3.370978 CGATCCAAAATAAGTGTCGCAGT 59.629 43.478 0.00 0.00 0.00 4.40
4046 4498 4.142902 CGATCCAAAATAAGTGTCGCAGTT 60.143 41.667 5.48 5.48 0.00 3.16
4047 4499 5.616866 CGATCCAAAATAAGTGTCGCAGTTT 60.617 40.000 5.46 0.00 0.00 2.66
4048 4500 5.508200 TCCAAAATAAGTGTCGCAGTTTT 57.492 34.783 5.46 0.00 0.00 2.43
4049 4501 5.277825 TCCAAAATAAGTGTCGCAGTTTTG 58.722 37.500 5.46 11.07 36.70 2.44
4050 4502 5.066634 TCCAAAATAAGTGTCGCAGTTTTGA 59.933 36.000 16.09 6.08 38.26 2.69
4051 4503 5.746245 CCAAAATAAGTGTCGCAGTTTTGAA 59.254 36.000 16.09 0.00 38.26 2.69
4052 4504 6.291585 CCAAAATAAGTGTCGCAGTTTTGAAC 60.292 38.462 16.09 0.00 38.26 3.18
4053 4505 5.751243 AATAAGTGTCGCAGTTTTGAACT 57.249 34.783 5.46 0.00 44.06 3.01
4054 4506 6.854496 AATAAGTGTCGCAGTTTTGAACTA 57.146 33.333 5.46 0.00 40.46 2.24
4055 4507 6.854496 ATAAGTGTCGCAGTTTTGAACTAA 57.146 33.333 5.46 0.00 40.46 2.24
4056 4508 4.795970 AGTGTCGCAGTTTTGAACTAAG 57.204 40.909 0.00 0.00 40.46 2.18
4057 4509 3.560068 AGTGTCGCAGTTTTGAACTAAGG 59.440 43.478 0.00 0.00 40.46 2.69
4058 4510 3.311596 GTGTCGCAGTTTTGAACTAAGGT 59.688 43.478 0.00 0.00 40.46 3.50
4059 4511 3.942748 TGTCGCAGTTTTGAACTAAGGTT 59.057 39.130 0.00 0.00 40.46 3.50
4060 4512 4.201871 TGTCGCAGTTTTGAACTAAGGTTG 60.202 41.667 0.00 0.00 40.46 3.77
4061 4513 3.314080 TCGCAGTTTTGAACTAAGGTTGG 59.686 43.478 0.00 0.00 40.46 3.77
4062 4514 3.314080 CGCAGTTTTGAACTAAGGTTGGA 59.686 43.478 0.00 0.00 40.46 3.53
4063 4515 4.023193 CGCAGTTTTGAACTAAGGTTGGAT 60.023 41.667 0.00 0.00 40.46 3.41
4064 4516 5.507315 CGCAGTTTTGAACTAAGGTTGGATT 60.507 40.000 0.00 0.00 40.46 3.01
4065 4517 5.691754 GCAGTTTTGAACTAAGGTTGGATTG 59.308 40.000 0.00 0.00 40.46 2.67
4066 4518 6.215845 CAGTTTTGAACTAAGGTTGGATTGG 58.784 40.000 0.00 0.00 40.46 3.16
4067 4519 6.040391 CAGTTTTGAACTAAGGTTGGATTGGA 59.960 38.462 0.00 0.00 40.46 3.53
4068 4520 6.265422 AGTTTTGAACTAAGGTTGGATTGGAG 59.735 38.462 0.00 0.00 40.69 3.86
4069 4521 4.301072 TGAACTAAGGTTGGATTGGAGG 57.699 45.455 0.00 0.00 35.58 4.30
4070 4522 3.010138 TGAACTAAGGTTGGATTGGAGGG 59.990 47.826 0.00 0.00 35.58 4.30
4075 4527 2.197465 AGGTTGGATTGGAGGGAGTAC 58.803 52.381 0.00 0.00 0.00 2.73
4078 4530 3.778629 GGTTGGATTGGAGGGAGTACTAA 59.221 47.826 0.00 0.00 0.00 2.24
4080 4532 5.104067 GGTTGGATTGGAGGGAGTACTAATT 60.104 44.000 0.00 0.00 0.00 1.40
4111 4563 7.370383 TCTGTTTCTATGTCTTTCAATTTGCC 58.630 34.615 0.00 0.00 0.00 4.52
4142 4595 7.559129 TGCCAGGCATGCATATATTGCTCTA 62.559 44.000 21.36 0.00 42.41 2.43
4157 4610 3.016736 TGCTCTATGCTTAAAAGGGTGC 58.983 45.455 0.00 0.00 43.37 5.01
4161 4615 5.394553 GCTCTATGCTTAAAAGGGTGCATTT 60.395 40.000 4.65 0.00 42.60 2.32
4218 4672 3.067742 GCACGGCAGTAGATAAAGGTAGA 59.932 47.826 0.00 0.00 0.00 2.59
4261 4751 5.585047 AGAAATACTGAAGCCCGTCATTTAC 59.415 40.000 0.00 0.00 0.00 2.01
4263 4753 3.134574 ACTGAAGCCCGTCATTTACAA 57.865 42.857 0.00 0.00 0.00 2.41
4319 4814 3.970640 TGAAAACCAGGTTAAATTGCCCT 59.029 39.130 4.87 0.00 0.00 5.19
4320 4815 5.148502 TGAAAACCAGGTTAAATTGCCCTA 58.851 37.500 4.87 0.00 0.00 3.53
4322 4817 5.738619 AAACCAGGTTAAATTGCCCTAAG 57.261 39.130 4.87 0.00 0.00 2.18
4324 4819 3.076937 ACCAGGTTAAATTGCCCTAAGGT 59.923 43.478 0.00 0.00 34.57 3.50
4325 4820 3.447229 CCAGGTTAAATTGCCCTAAGGTG 59.553 47.826 0.00 0.00 34.57 4.00
4327 4822 3.076937 AGGTTAAATTGCCCTAAGGTGGT 59.923 43.478 0.00 0.00 34.57 4.16
4328 4823 4.292836 AGGTTAAATTGCCCTAAGGTGGTA 59.707 41.667 0.00 0.00 34.57 3.25
4330 4825 3.382083 AAATTGCCCTAAGGTGGTAGG 57.618 47.619 0.00 0.00 40.48 3.18
4337 4832 1.565067 CTAAGGTGGTAGGGTTCGGT 58.435 55.000 0.00 0.00 0.00 4.69
4418 4922 0.892814 TGGCATGGCAATGTTGACGA 60.893 50.000 21.13 0.00 39.74 4.20
4427 4931 2.414559 GCAATGTTGACGAGGTGGATTG 60.415 50.000 0.00 0.00 0.00 2.67
4511 5028 2.119495 ACTGACCTGGATGGATGTACC 58.881 52.381 0.00 0.00 39.71 3.34
4653 5170 2.432628 CGTCGGCCACTGGTCTTC 60.433 66.667 2.24 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.911143 GGCCACTCCACGGATGAT 59.089 61.111 0.00 0.00 34.01 2.45
1 2 3.770040 CGGCCACTCCACGGATGA 61.770 66.667 2.24 0.00 34.01 2.92
2 3 4.082523 ACGGCCACTCCACGGATG 62.083 66.667 2.24 0.00 34.01 3.51
3 4 3.771160 GACGGCCACTCCACGGAT 61.771 66.667 2.24 0.00 34.01 4.18
14 15 4.814294 CCAGCAGGTACGACGGCC 62.814 72.222 0.00 0.00 0.00 6.13
25 26 4.093952 CTTTCGCGGCACCAGCAG 62.094 66.667 6.13 0.00 44.61 4.24
78 79 3.152341 CTCTGAACAACAAGGCAAGGAT 58.848 45.455 0.00 0.00 0.00 3.24
89 91 0.670854 GACCCGGCTCTCTGAACAAC 60.671 60.000 0.00 0.00 0.00 3.32
96 98 2.194388 TACGACTGACCCGGCTCTCT 62.194 60.000 0.00 0.00 0.00 3.10
104 106 1.246737 AACGGACCTACGACTGACCC 61.247 60.000 0.00 0.00 37.61 4.46
106 108 0.169894 GGAACGGACCTACGACTGAC 59.830 60.000 0.00 0.00 37.61 3.51
115 117 0.041238 TCTCATGGAGGAACGGACCT 59.959 55.000 2.37 2.37 43.64 3.85
136 138 1.071019 CATGGTCTGACCGTTCGACG 61.071 60.000 18.77 4.00 42.58 5.12
143 145 2.268920 CCACCCATGGTCTGACCG 59.731 66.667 21.15 9.81 42.58 4.79
153 155 8.945193 AGACATATATTTTGTAGTACCACCCAT 58.055 33.333 0.00 0.00 0.00 4.00
154 156 8.326765 AGACATATATTTTGTAGTACCACCCA 57.673 34.615 0.00 0.00 0.00 4.51
155 157 7.876582 GGAGACATATATTTTGTAGTACCACCC 59.123 40.741 0.00 0.00 0.00 4.61
156 158 8.648693 AGGAGACATATATTTTGTAGTACCACC 58.351 37.037 0.00 0.00 0.00 4.61
157 159 9.694137 GAGGAGACATATATTTTGTAGTACCAC 57.306 37.037 0.00 0.00 0.00 4.16
158 160 9.656323 AGAGGAGACATATATTTTGTAGTACCA 57.344 33.333 0.00 0.00 0.00 3.25
159 161 9.915629 CAGAGGAGACATATATTTTGTAGTACC 57.084 37.037 0.00 0.00 0.00 3.34
160 162 9.915629 CCAGAGGAGACATATATTTTGTAGTAC 57.084 37.037 0.00 0.00 0.00 2.73
161 163 8.585881 GCCAGAGGAGACATATATTTTGTAGTA 58.414 37.037 0.00 0.00 0.00 1.82
162 164 7.291182 AGCCAGAGGAGACATATATTTTGTAGT 59.709 37.037 0.00 0.00 0.00 2.73
163 165 7.675062 AGCCAGAGGAGACATATATTTTGTAG 58.325 38.462 0.00 0.00 0.00 2.74
166 168 6.649973 CAGAGCCAGAGGAGACATATATTTTG 59.350 42.308 0.00 0.00 0.00 2.44
184 186 2.203832 TGAGAGTGCCCAGAGCCA 60.204 61.111 0.00 0.00 42.71 4.75
209 211 2.044946 ACAAGCATCGGGGGAAGC 60.045 61.111 0.00 0.00 0.00 3.86
217 219 1.703438 GGAGCAGAGCACAAGCATCG 61.703 60.000 1.96 0.00 45.49 3.84
219 221 1.378250 GGGAGCAGAGCACAAGCAT 60.378 57.895 1.96 0.00 45.49 3.79
221 223 1.303155 AAGGGAGCAGAGCACAAGC 60.303 57.895 0.00 0.00 42.56 4.01
227 229 0.747283 CATGGACAAGGGAGCAGAGC 60.747 60.000 0.00 0.00 0.00 4.09
257 259 0.901114 TTGGGAGTGCCGTAGTAGCA 60.901 55.000 0.00 0.00 38.08 3.49
259 261 1.134788 CCTTTGGGAGTGCCGTAGTAG 60.135 57.143 0.00 0.00 33.83 2.57
261 263 0.834687 TCCTTTGGGAGTGCCGTAGT 60.835 55.000 0.00 0.00 36.57 2.73
274 276 3.252974 AGTCGGTGCTAGAATCCTTTG 57.747 47.619 0.00 0.00 0.00 2.77
278 280 1.480954 TGGAAGTCGGTGCTAGAATCC 59.519 52.381 0.00 0.00 0.00 3.01
286 288 1.078848 AGAGCATGGAAGTCGGTGC 60.079 57.895 0.00 0.00 37.84 5.01
333 338 1.229658 AAGCTAGGGGTCCAGCAGT 60.230 57.895 2.76 0.00 40.36 4.40
343 348 1.736032 CGTTCTTCCACGAAGCTAGGG 60.736 57.143 0.00 0.00 43.15 3.53
389 400 2.158827 TCTCTTGCTGCAAGTAACACCA 60.159 45.455 33.94 17.21 41.66 4.17
533 544 3.244526 GGCCAATTTCAGGTGGAATTTGT 60.245 43.478 0.00 0.00 41.75 2.83
593 604 6.044754 TGCTTGGGATCATTCCACTAAGATAT 59.955 38.462 0.00 0.00 44.60 1.63
788 799 6.972901 GGCTATTTGTAGCAAGATGTAAAACC 59.027 38.462 9.39 0.00 44.51 3.27
834 845 1.889545 GAAGAGCTGCTTCCAAGTGT 58.110 50.000 2.53 0.00 45.90 3.55
971 982 3.490348 AGTGTTAAGCAATGCAGAAGGT 58.510 40.909 8.35 0.00 0.00 3.50
985 996 4.398549 GCGACATGCTGTTAAGTGTTAA 57.601 40.909 0.00 0.00 41.73 2.01
987 998 2.969443 GCGACATGCTGTTAAGTGTT 57.031 45.000 0.00 0.00 41.73 3.32
1116 1133 5.952347 TCCCTAAAGAAGAAGGTATGGTC 57.048 43.478 0.00 0.00 0.00 4.02
1194 1352 7.749666 ACAGAATATTGCCTATACTCATTGGT 58.250 34.615 0.00 0.00 30.48 3.67
1270 1428 9.507329 AAGTGATGATATGTTGTAAAGAGTGTT 57.493 29.630 0.00 0.00 0.00 3.32
1423 1581 3.568007 TGAAGATTGGTTGTGTTGGCTAC 59.432 43.478 0.00 0.00 0.00 3.58
1519 1677 3.525199 AGTTGGTTCCAGCCTAGATTCAT 59.475 43.478 2.21 0.00 0.00 2.57
2228 2386 3.017048 TGATGCCTCCCAAACTTATGG 57.983 47.619 0.00 0.00 40.35 2.74
3051 3218 1.293963 GCTTCAGATCGCAGTGTGCA 61.294 55.000 0.00 0.00 45.36 4.57
3114 3281 3.832490 GGAACTTAGCCAACCCAAAATCT 59.168 43.478 0.00 0.00 0.00 2.40
3348 3526 5.188327 TGATGACTCCAGAGCTAAATACG 57.812 43.478 0.00 0.00 0.00 3.06
3359 3537 6.289834 AGCATTTCTAAGATGATGACTCCAG 58.710 40.000 0.00 0.00 0.00 3.86
3384 3562 0.320073 CGGTTGGACGCTTTCCTGTA 60.320 55.000 3.14 0.00 46.10 2.74
3505 3683 1.338105 TGCATCTTCACCTTCACCTCG 60.338 52.381 0.00 0.00 0.00 4.63
3509 3687 0.807496 GCCTGCATCTTCACCTTCAC 59.193 55.000 0.00 0.00 0.00 3.18
3529 3707 2.173519 TCGTTCCCGGTCTGAATTACT 58.826 47.619 0.00 0.00 33.95 2.24
3582 3766 2.924105 GCACAGCAACCCAAGCTCC 61.924 63.158 0.00 0.00 41.14 4.70
3595 3779 1.226686 GGTGTGTCTGCAGAGCACAG 61.227 60.000 33.31 6.47 42.76 3.66
3606 3790 1.207329 GGCCGATCTTTAGGTGTGTCT 59.793 52.381 0.00 0.00 0.00 3.41
3609 3793 1.737793 GTTGGCCGATCTTTAGGTGTG 59.262 52.381 0.00 0.00 0.00 3.82
3648 3832 7.376435 TGATTCTTTGATTGCGATAACTTCA 57.624 32.000 0.00 0.00 0.00 3.02
3685 3869 2.586648 TTTCCTTTTCCTCAGCCCTC 57.413 50.000 0.00 0.00 0.00 4.30
3714 3901 9.490379 GAAATGTAAACTACTCTTCTTCAAGGA 57.510 33.333 0.00 0.00 0.00 3.36
3794 3994 1.015609 TCACAGGATACAGGGGAGGA 58.984 55.000 0.00 0.00 41.41 3.71
3839 4039 2.831685 AGATTTACAGTGGTGTCGCA 57.168 45.000 0.00 0.00 38.19 5.10
3843 4044 3.744426 GTGCGTAAGATTTACAGTGGTGT 59.256 43.478 0.00 0.00 39.62 4.16
3856 4057 7.929245 TGCTTCATTATATTAAGGTGCGTAAGA 59.071 33.333 0.00 0.00 43.02 2.10
3858 4059 7.307751 GCTGCTTCATTATATTAAGGTGCGTAA 60.308 37.037 0.00 0.00 0.00 3.18
3863 4064 5.769662 TGGGCTGCTTCATTATATTAAGGTG 59.230 40.000 0.00 0.00 0.00 4.00
3865 4066 5.105997 GCTGGGCTGCTTCATTATATTAAGG 60.106 44.000 0.00 0.00 0.00 2.69
3938 4388 8.815912 TGCTGAACATTATTCCATATAGCTAGA 58.184 33.333 0.00 0.00 0.00 2.43
3964 4416 4.902448 AGAGTAAGACAGGGAAGTTTCAGT 59.098 41.667 0.00 0.00 0.00 3.41
3965 4417 5.221541 ACAGAGTAAGACAGGGAAGTTTCAG 60.222 44.000 0.00 0.00 0.00 3.02
3970 4422 5.632034 AAAACAGAGTAAGACAGGGAAGT 57.368 39.130 0.00 0.00 0.00 3.01
3995 4447 9.012161 AGAGAGTACTAGTTTGTTAGGTGTTAG 57.988 37.037 0.00 0.00 0.00 2.34
3997 4449 7.039853 GGAGAGAGTACTAGTTTGTTAGGTGTT 60.040 40.741 0.00 0.00 0.00 3.32
3998 4450 6.433716 GGAGAGAGTACTAGTTTGTTAGGTGT 59.566 42.308 0.00 0.00 0.00 4.16
4000 4452 5.647225 CGGAGAGAGTACTAGTTTGTTAGGT 59.353 44.000 0.00 0.00 0.00 3.08
4001 4453 5.879223 TCGGAGAGAGTACTAGTTTGTTAGG 59.121 44.000 0.00 0.00 0.00 2.69
4002 4454 6.981762 TCGGAGAGAGTACTAGTTTGTTAG 57.018 41.667 0.00 0.00 0.00 2.34
4005 4457 4.883006 GGATCGGAGAGAGTACTAGTTTGT 59.117 45.833 0.00 0.00 43.63 2.83
4007 4459 5.113446 TGGATCGGAGAGAGTACTAGTTT 57.887 43.478 0.00 0.00 43.63 2.66
4010 4462 6.642707 ATTTTGGATCGGAGAGAGTACTAG 57.357 41.667 0.00 0.00 43.63 2.57
4011 4463 7.778853 ACTTATTTTGGATCGGAGAGAGTACTA 59.221 37.037 0.00 0.00 43.63 1.82
4013 4465 6.697892 CACTTATTTTGGATCGGAGAGAGTAC 59.302 42.308 0.00 0.00 43.63 2.73
4014 4466 6.380274 ACACTTATTTTGGATCGGAGAGAGTA 59.620 38.462 0.00 0.00 43.63 2.59
4016 4468 5.665459 ACACTTATTTTGGATCGGAGAGAG 58.335 41.667 0.00 0.00 43.63 3.20
4017 4469 5.661458 GACACTTATTTTGGATCGGAGAGA 58.339 41.667 0.00 0.00 43.63 3.10
4018 4470 4.504461 CGACACTTATTTTGGATCGGAGAG 59.496 45.833 0.00 0.00 43.63 3.20
4019 4471 4.430007 CGACACTTATTTTGGATCGGAGA 58.570 43.478 0.00 0.00 45.75 3.71
4020 4472 3.001330 GCGACACTTATTTTGGATCGGAG 59.999 47.826 0.00 0.00 0.00 4.63
4021 4473 2.933906 GCGACACTTATTTTGGATCGGA 59.066 45.455 0.00 0.00 0.00 4.55
4022 4474 2.675844 TGCGACACTTATTTTGGATCGG 59.324 45.455 0.00 0.00 0.00 4.18
4023 4475 3.370978 ACTGCGACACTTATTTTGGATCG 59.629 43.478 0.00 0.00 0.00 3.69
4024 4476 4.946784 ACTGCGACACTTATTTTGGATC 57.053 40.909 0.00 0.00 0.00 3.36
4025 4477 5.705609 AAACTGCGACACTTATTTTGGAT 57.294 34.783 0.00 0.00 0.00 3.41
4026 4478 5.066634 TCAAAACTGCGACACTTATTTTGGA 59.933 36.000 7.24 0.00 37.53 3.53
4027 4479 5.277825 TCAAAACTGCGACACTTATTTTGG 58.722 37.500 7.24 0.00 37.53 3.28
4028 4480 6.472163 AGTTCAAAACTGCGACACTTATTTTG 59.528 34.615 0.00 0.00 41.01 2.44
4029 4481 6.560711 AGTTCAAAACTGCGACACTTATTTT 58.439 32.000 0.00 0.00 41.01 1.82
4030 4482 6.131544 AGTTCAAAACTGCGACACTTATTT 57.868 33.333 0.00 0.00 41.01 1.40
4031 4483 5.751243 AGTTCAAAACTGCGACACTTATT 57.249 34.783 0.00 0.00 41.01 1.40
4032 4484 6.073222 CCTTAGTTCAAAACTGCGACACTTAT 60.073 38.462 2.65 0.00 42.84 1.73
4033 4485 5.235616 CCTTAGTTCAAAACTGCGACACTTA 59.764 40.000 2.65 0.00 42.84 2.24
4034 4486 4.035208 CCTTAGTTCAAAACTGCGACACTT 59.965 41.667 2.65 0.00 42.84 3.16
4035 4487 3.560068 CCTTAGTTCAAAACTGCGACACT 59.440 43.478 2.65 0.00 42.84 3.55
4036 4488 3.311596 ACCTTAGTTCAAAACTGCGACAC 59.688 43.478 2.65 0.00 42.84 3.67
4037 4489 3.537580 ACCTTAGTTCAAAACTGCGACA 58.462 40.909 2.65 0.00 42.84 4.35
4038 4490 4.279659 CAACCTTAGTTCAAAACTGCGAC 58.720 43.478 2.65 0.00 42.84 5.19
4039 4491 3.314080 CCAACCTTAGTTCAAAACTGCGA 59.686 43.478 2.65 0.00 42.84 5.10
4040 4492 3.314080 TCCAACCTTAGTTCAAAACTGCG 59.686 43.478 2.65 0.00 42.84 5.18
4041 4493 4.911514 TCCAACCTTAGTTCAAAACTGC 57.088 40.909 2.65 0.00 42.84 4.40
4042 4494 6.040391 TCCAATCCAACCTTAGTTCAAAACTG 59.960 38.462 2.65 0.00 42.84 3.16
4043 4495 6.133356 TCCAATCCAACCTTAGTTCAAAACT 58.867 36.000 0.00 0.00 45.40 2.66
4044 4496 6.399639 TCCAATCCAACCTTAGTTCAAAAC 57.600 37.500 0.00 0.00 32.45 2.43
4045 4497 5.538433 CCTCCAATCCAACCTTAGTTCAAAA 59.462 40.000 0.00 0.00 32.45 2.44
4046 4498 5.076873 CCTCCAATCCAACCTTAGTTCAAA 58.923 41.667 0.00 0.00 32.45 2.69
4047 4499 4.508405 CCCTCCAATCCAACCTTAGTTCAA 60.508 45.833 0.00 0.00 32.45 2.69
4048 4500 3.010138 CCCTCCAATCCAACCTTAGTTCA 59.990 47.826 0.00 0.00 32.45 3.18
4049 4501 3.265995 TCCCTCCAATCCAACCTTAGTTC 59.734 47.826 0.00 0.00 32.45 3.01
4050 4502 3.265489 TCCCTCCAATCCAACCTTAGTT 58.735 45.455 0.00 0.00 36.33 2.24
4051 4503 2.846827 CTCCCTCCAATCCAACCTTAGT 59.153 50.000 0.00 0.00 0.00 2.24
4052 4504 2.846827 ACTCCCTCCAATCCAACCTTAG 59.153 50.000 0.00 0.00 0.00 2.18
4053 4505 2.929301 ACTCCCTCCAATCCAACCTTA 58.071 47.619 0.00 0.00 0.00 2.69
4054 4506 1.760405 ACTCCCTCCAATCCAACCTT 58.240 50.000 0.00 0.00 0.00 3.50
4055 4507 2.197465 GTACTCCCTCCAATCCAACCT 58.803 52.381 0.00 0.00 0.00 3.50
4056 4508 2.197465 AGTACTCCCTCCAATCCAACC 58.803 52.381 0.00 0.00 0.00 3.77
4057 4509 5.632034 ATTAGTACTCCCTCCAATCCAAC 57.368 43.478 0.00 0.00 0.00 3.77
4058 4510 6.652205 AAATTAGTACTCCCTCCAATCCAA 57.348 37.500 0.00 0.00 0.00 3.53
4059 4511 6.652205 AAAATTAGTACTCCCTCCAATCCA 57.348 37.500 0.00 0.00 0.00 3.41
4084 4536 9.248291 GCAAATTGAAAGACATAGAAACAGAAA 57.752 29.630 0.00 0.00 0.00 2.52
4088 4540 7.147312 CAGGCAAATTGAAAGACATAGAAACA 58.853 34.615 0.00 0.00 0.00 2.83
4095 4547 5.927281 ATAGCAGGCAAATTGAAAGACAT 57.073 34.783 0.00 0.00 0.00 3.06
4099 4551 3.619929 GGCAATAGCAGGCAAATTGAAAG 59.380 43.478 17.98 0.00 44.61 2.62
4111 4563 1.362717 GCATGCCTGGCAATAGCAG 59.637 57.895 27.24 12.13 43.62 4.24
4161 4615 8.380099 ACCACCTTAATCTTCATGTTAAGTACA 58.620 33.333 10.81 0.00 41.97 2.90
4183 4637 1.874872 TGCCGTGCTACTTTTAACCAC 59.125 47.619 0.00 0.00 0.00 4.16
4184 4638 2.147958 CTGCCGTGCTACTTTTAACCA 58.852 47.619 0.00 0.00 0.00 3.67
4218 4672 6.745794 TTTCTGGGATTTGAAATGGACTTT 57.254 33.333 0.00 0.00 0.00 2.66
4229 4719 4.098501 GGGCTTCAGTATTTCTGGGATTTG 59.901 45.833 0.00 0.00 43.76 2.32
4261 4751 9.659830 GGCGTTAAGATTATATAACCAGTTTTG 57.340 33.333 0.00 0.00 0.00 2.44
4263 4753 9.623000 AAGGCGTTAAGATTATATAACCAGTTT 57.377 29.630 0.00 0.00 0.00 2.66
4319 4814 1.624813 CAACCGAACCCTACCACCTTA 59.375 52.381 0.00 0.00 0.00 2.69
4320 4815 0.399075 CAACCGAACCCTACCACCTT 59.601 55.000 0.00 0.00 0.00 3.50
4322 4817 1.002990 CCAACCGAACCCTACCACC 60.003 63.158 0.00 0.00 0.00 4.61
4324 4819 1.727062 TAACCAACCGAACCCTACCA 58.273 50.000 0.00 0.00 0.00 3.25
4325 4820 2.426522 GTTAACCAACCGAACCCTACC 58.573 52.381 0.00 0.00 0.00 3.18
4327 4822 2.857186 GGTTAACCAACCGAACCCTA 57.143 50.000 20.12 0.00 44.74 3.53
4328 4823 3.731716 GGTTAACCAACCGAACCCT 57.268 52.632 20.12 0.00 44.74 4.34
4337 4832 9.027202 GTTTTGGAATATTAGGAGGTTAACCAA 57.973 33.333 26.26 12.15 38.89 3.67
4393 4897 1.448189 CATTGCCATGCCAAACGGG 60.448 57.895 0.00 0.00 40.85 5.28
4394 4898 0.320596 AACATTGCCATGCCAAACGG 60.321 50.000 0.00 0.00 33.05 4.44
4409 4913 3.074412 GTTCAATCCACCTCGTCAACAT 58.926 45.455 0.00 0.00 0.00 2.71
4418 4922 2.494059 CACGTTGAGTTCAATCCACCT 58.506 47.619 0.00 0.00 38.24 4.00
4427 4931 2.350772 CCATCAAAGCCACGTTGAGTTC 60.351 50.000 2.65 0.00 38.34 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.