Multiple sequence alignment - TraesCS7D01G355500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G355500 chr7D 100.000 3132 0 0 1 3132 459449788 459452919 0.000000e+00 5784
1 TraesCS7D01G355500 chr7D 85.378 807 81 17 2351 3132 459581989 459582783 0.000000e+00 802
2 TraesCS7D01G355500 chr7D 94.136 324 17 2 1717 2039 459451225 459451547 2.810000e-135 492
3 TraesCS7D01G355500 chr7D 94.136 324 17 2 1438 1760 459451504 459451826 2.810000e-135 492
4 TraesCS7D01G355500 chr7D 85.200 250 17 3 2036 2272 459581354 459581596 4.040000e-59 239
5 TraesCS7D01G355500 chr7A 93.273 877 46 6 891 1760 540766818 540765948 0.000000e+00 1280
6 TraesCS7D01G355500 chr7A 95.374 562 25 1 1717 2278 540766270 540765710 0.000000e+00 893
7 TraesCS7D01G355500 chr7A 91.045 335 26 3 2799 3132 540763975 540763644 1.710000e-122 449
8 TraesCS7D01G355500 chr7A 94.410 161 7 2 2352 2511 540765272 540765113 2.410000e-61 246
9 TraesCS7D01G355500 chr7A 80.612 294 30 16 931 1211 540753816 540753537 5.300000e-48 202
10 TraesCS7D01G355500 chr7A 78.105 306 32 14 1792 2096 540606451 540606180 8.990000e-36 161
11 TraesCS7D01G355500 chr7A 93.878 98 6 0 710 807 540767316 540767219 7.000000e-32 148
12 TraesCS7D01G355500 chr7A 87.619 105 7 4 999 1097 539852254 539852150 1.970000e-22 117
13 TraesCS7D01G355500 chr1D 93.944 710 40 2 1 710 261720228 261720934 0.000000e+00 1070
14 TraesCS7D01G355500 chr4A 91.854 712 54 3 1 711 8178943 8179651 0.000000e+00 990
15 TraesCS7D01G355500 chr4A 91.268 710 57 4 1 709 8198793 8199498 0.000000e+00 963
16 TraesCS7D01G355500 chr2A 91.854 712 46 10 1 711 624480845 624481545 0.000000e+00 983
17 TraesCS7D01G355500 chr5A 91.713 712 52 6 1 711 652641149 652640444 0.000000e+00 981
18 TraesCS7D01G355500 chr2B 91.831 710 47 9 1 705 16124184 16123481 0.000000e+00 979
19 TraesCS7D01G355500 chr2B 91.329 715 53 8 1 711 713996184 713995475 0.000000e+00 968
20 TraesCS7D01G355500 chr2D 91.573 712 53 5 1 711 633419509 633418804 0.000000e+00 976
21 TraesCS7D01G355500 chr5B 91.176 714 54 8 1 711 708587889 708588596 0.000000e+00 961
22 TraesCS7D01G355500 chr7B 90.777 618 29 13 2540 3132 481512379 481512993 0.000000e+00 800


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G355500 chr7D 459449788 459452919 3131 False 2256.0 5784 96.090667 1 3132 3 chr7D.!!$F1 3131
1 TraesCS7D01G355500 chr7D 459581354 459582783 1429 False 520.5 802 85.289000 2036 3132 2 chr7D.!!$F2 1096
2 TraesCS7D01G355500 chr7A 540763644 540767316 3672 True 603.2 1280 93.596000 710 3132 5 chr7A.!!$R4 2422
3 TraesCS7D01G355500 chr1D 261720228 261720934 706 False 1070.0 1070 93.944000 1 710 1 chr1D.!!$F1 709
4 TraesCS7D01G355500 chr4A 8178943 8179651 708 False 990.0 990 91.854000 1 711 1 chr4A.!!$F1 710
5 TraesCS7D01G355500 chr4A 8198793 8199498 705 False 963.0 963 91.268000 1 709 1 chr4A.!!$F2 708
6 TraesCS7D01G355500 chr2A 624480845 624481545 700 False 983.0 983 91.854000 1 711 1 chr2A.!!$F1 710
7 TraesCS7D01G355500 chr5A 652640444 652641149 705 True 981.0 981 91.713000 1 711 1 chr5A.!!$R1 710
8 TraesCS7D01G355500 chr2B 16123481 16124184 703 True 979.0 979 91.831000 1 705 1 chr2B.!!$R1 704
9 TraesCS7D01G355500 chr2B 713995475 713996184 709 True 968.0 968 91.329000 1 711 1 chr2B.!!$R2 710
10 TraesCS7D01G355500 chr2D 633418804 633419509 705 True 976.0 976 91.573000 1 711 1 chr2D.!!$R1 710
11 TraesCS7D01G355500 chr5B 708587889 708588596 707 False 961.0 961 91.176000 1 711 1 chr5B.!!$F1 710
12 TraesCS7D01G355500 chr7B 481512379 481512993 614 False 800.0 800 90.777000 2540 3132 1 chr7B.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 829 0.185901 AACACATGCCACCCTCTTGT 59.814 50.0 0.00 0.0 0.00 3.16 F
1631 1986 0.032952 CGAAGGTCCTGGACACGAAA 59.967 55.0 26.94 0.0 33.68 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 2081 0.040058 TAGGAGGCTTGACGGGTACA 59.960 55.0 0.0 0.0 0.00 2.9 R
2520 4121 0.393537 ACCTGCTCTATTGCCAGTGC 60.394 55.0 0.0 0.0 35.97 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 3.199551 CGGGTATGTTCGTCCGGA 58.800 61.111 0.00 0.00 38.93 5.14
122 124 2.481854 CTTCAAGATGGCCTCAGATCG 58.518 52.381 3.32 0.00 0.00 3.69
183 185 2.037641 GGTCAAGATTGCTTTTGGGCTT 59.962 45.455 0.00 0.00 30.14 4.35
245 247 2.821969 CAAGGTGCAGCCAGATTTTACT 59.178 45.455 13.29 0.00 40.61 2.24
319 321 3.383185 TGGACGTGAATTGAAGCCTTTTT 59.617 39.130 0.00 0.00 0.00 1.94
343 345 2.743718 CACAGGAAGTCCAGCCGT 59.256 61.111 0.00 0.00 38.89 5.68
354 356 5.419471 GGAAGTCCAGCCGTCTCTTATATAT 59.581 44.000 0.00 0.00 35.64 0.86
400 408 3.398954 ACACACAATCGAACAACACAC 57.601 42.857 0.00 0.00 0.00 3.82
601 609 1.375523 CGGGTCTACAAAAGCGCCT 60.376 57.895 2.29 0.00 0.00 5.52
665 674 1.153025 ATGAGCTGCGGTGCATCAT 60.153 52.632 0.00 2.84 38.13 2.45
723 732 1.873486 CGAACACATGACAGACCAGCA 60.873 52.381 0.00 0.00 0.00 4.41
747 756 1.471684 GAGCAAGTTGCCTGGAGAATG 59.528 52.381 24.02 0.00 46.52 2.67
779 788 7.061557 GGTACGAGTAGAGTGTTTTGTATGAAC 59.938 40.741 0.00 0.00 0.00 3.18
792 801 1.029408 TATGAACGCATGCCACCCAC 61.029 55.000 13.15 0.00 35.94 4.61
800 809 0.528924 CATGCCACCCACTTGTGATG 59.471 55.000 1.89 0.82 38.55 3.07
814 823 2.959967 TGATGAACACATGCCACCC 58.040 52.632 0.00 0.00 0.00 4.61
815 824 0.405198 TGATGAACACATGCCACCCT 59.595 50.000 0.00 0.00 0.00 4.34
816 825 1.098050 GATGAACACATGCCACCCTC 58.902 55.000 0.00 0.00 0.00 4.30
817 826 0.700564 ATGAACACATGCCACCCTCT 59.299 50.000 0.00 0.00 0.00 3.69
818 827 0.478072 TGAACACATGCCACCCTCTT 59.522 50.000 0.00 0.00 0.00 2.85
819 828 0.883833 GAACACATGCCACCCTCTTG 59.116 55.000 0.00 0.00 0.00 3.02
820 829 0.185901 AACACATGCCACCCTCTTGT 59.814 50.000 0.00 0.00 0.00 3.16
821 830 0.538057 ACACATGCCACCCTCTTGTG 60.538 55.000 0.00 0.00 42.07 3.33
822 831 0.250858 CACATGCCACCCTCTTGTGA 60.251 55.000 0.00 0.00 40.12 3.58
823 832 0.700564 ACATGCCACCCTCTTGTGAT 59.299 50.000 0.00 0.00 38.55 3.06
824 833 1.100510 CATGCCACCCTCTTGTGATG 58.899 55.000 0.00 0.00 38.55 3.07
825 834 0.994247 ATGCCACCCTCTTGTGATGA 59.006 50.000 0.00 0.00 38.55 2.92
826 835 0.770499 TGCCACCCTCTTGTGATGAA 59.230 50.000 0.00 0.00 38.55 2.57
827 836 1.168714 GCCACCCTCTTGTGATGAAC 58.831 55.000 0.00 0.00 38.55 3.18
828 837 1.545428 GCCACCCTCTTGTGATGAACA 60.545 52.381 0.00 0.00 38.55 3.18
829 838 2.430465 CCACCCTCTTGTGATGAACAG 58.570 52.381 0.00 0.00 40.74 3.16
841 850 2.700371 TGATGAACAGAGTGTGTGGAGT 59.300 45.455 0.00 0.00 40.26 3.85
844 853 1.067212 GAACAGAGTGTGTGGAGTCGT 59.933 52.381 0.00 0.00 40.26 4.34
858 867 1.080025 GTCGTCGGGGAAGGTCAAG 60.080 63.158 0.00 0.00 0.00 3.02
889 902 4.830765 GCTGGGTGCGCATACGGA 62.831 66.667 15.91 0.00 40.57 4.69
906 1254 3.771216 ACGGAGGTTAGAAAGTCCACTA 58.229 45.455 0.00 0.00 0.00 2.74
907 1255 4.351127 ACGGAGGTTAGAAAGTCCACTAT 58.649 43.478 0.00 0.00 0.00 2.12
916 1264 4.579869 AGAAAGTCCACTATGAAACGCAT 58.420 39.130 0.00 0.00 41.08 4.73
917 1265 4.631813 AGAAAGTCCACTATGAAACGCATC 59.368 41.667 0.00 0.00 38.44 3.91
918 1266 2.540515 AGTCCACTATGAAACGCATCG 58.459 47.619 0.00 0.00 38.44 3.84
919 1267 1.593006 GTCCACTATGAAACGCATCGG 59.407 52.381 0.00 0.00 38.44 4.18
921 1269 2.427812 TCCACTATGAAACGCATCGGTA 59.572 45.455 0.00 0.00 38.44 4.02
992 1347 0.312416 CTGCCTAGTAGCTAGCACCG 59.688 60.000 18.83 7.23 33.12 4.94
1005 1360 1.153086 GCACCGATCAAGGATGGCT 60.153 57.895 0.00 0.00 34.73 4.75
1079 1434 1.881498 GCCACAGCTGAGCTCTTTCTT 60.881 52.381 23.35 0.00 36.40 2.52
1080 1435 2.075338 CCACAGCTGAGCTCTTTCTTC 58.925 52.381 23.35 0.00 36.40 2.87
1081 1436 2.289569 CCACAGCTGAGCTCTTTCTTCT 60.290 50.000 23.35 0.09 36.40 2.85
1091 1446 1.136110 CTCTTTCTTCTCCTCCTCCGC 59.864 57.143 0.00 0.00 0.00 5.54
1180 1535 3.810743 GCTTCCAGTCACCACAGGTTAAT 60.811 47.826 0.00 0.00 31.02 1.40
1228 1583 4.156739 CCTTTTTGGTTCCAGCTATCAGTC 59.843 45.833 0.00 0.00 0.00 3.51
1229 1584 3.350219 TTTGGTTCCAGCTATCAGTCC 57.650 47.619 0.00 0.00 0.00 3.85
1233 1588 3.330701 TGGTTCCAGCTATCAGTCCTTTT 59.669 43.478 0.00 0.00 0.00 2.27
1261 1616 9.293404 TCTTCTAGAACAAGCTAACAGTTAGTA 57.707 33.333 19.55 3.92 35.66 1.82
1267 1622 8.513774 AGAACAAGCTAACAGTTAGTACTCTAC 58.486 37.037 19.55 0.00 35.66 2.59
1311 1666 2.688666 ATGCCCGAAGCTCCCTGA 60.689 61.111 0.00 0.00 44.23 3.86
1312 1667 2.074948 ATGCCCGAAGCTCCCTGAT 61.075 57.895 0.00 0.00 44.23 2.90
1328 1683 3.306088 CCCTGATGGTCCACGTACATATC 60.306 52.174 0.00 0.00 0.00 1.63
1337 1692 3.318275 TCCACGTACATATCAGGAAGAGC 59.682 47.826 0.00 0.00 0.00 4.09
1372 1727 5.597813 CACTTCATGGAGTAACTGACAAC 57.402 43.478 6.26 0.00 0.00 3.32
1453 1808 0.396811 GCACACCTGAACCTGTACCT 59.603 55.000 0.00 0.00 0.00 3.08
1457 1812 1.691976 CACCTGAACCTGTACCTGTCA 59.308 52.381 0.00 0.00 0.00 3.58
1466 1821 1.198759 TGTACCTGTCAAGCCTCCCC 61.199 60.000 0.00 0.00 0.00 4.81
1467 1822 1.987855 TACCTGTCAAGCCTCCCCG 60.988 63.158 0.00 0.00 0.00 5.73
1468 1823 4.101448 CCTGTCAAGCCTCCCCGG 62.101 72.222 0.00 0.00 0.00 5.73
1469 1824 4.101448 CTGTCAAGCCTCCCCGGG 62.101 72.222 15.80 15.80 0.00 5.73
1486 1841 3.933206 GGCCATCCCTGAATTTCCT 57.067 52.632 0.00 0.00 0.00 3.36
1488 1843 3.532641 GGCCATCCCTGAATTTCCTAT 57.467 47.619 0.00 0.00 0.00 2.57
1489 1844 3.160269 GGCCATCCCTGAATTTCCTATG 58.840 50.000 0.00 0.00 0.00 2.23
1490 1845 2.560105 GCCATCCCTGAATTTCCTATGC 59.440 50.000 0.00 0.00 0.00 3.14
1491 1846 3.836146 CCATCCCTGAATTTCCTATGCA 58.164 45.455 0.00 0.00 0.00 3.96
1492 1847 3.571401 CCATCCCTGAATTTCCTATGCAC 59.429 47.826 0.00 0.00 0.00 4.57
1493 1848 3.297134 TCCCTGAATTTCCTATGCACC 57.703 47.619 0.00 0.00 0.00 5.01
1494 1849 2.091885 TCCCTGAATTTCCTATGCACCC 60.092 50.000 0.00 0.00 0.00 4.61
1495 1850 2.091665 CCCTGAATTTCCTATGCACCCT 60.092 50.000 0.00 0.00 0.00 4.34
1496 1851 2.954318 CCTGAATTTCCTATGCACCCTG 59.046 50.000 0.00 0.00 0.00 4.45
1497 1852 3.371917 CCTGAATTTCCTATGCACCCTGA 60.372 47.826 0.00 0.00 0.00 3.86
1498 1853 4.272489 CTGAATTTCCTATGCACCCTGAA 58.728 43.478 0.00 0.00 0.00 3.02
1499 1854 4.272489 TGAATTTCCTATGCACCCTGAAG 58.728 43.478 0.00 0.00 0.00 3.02
1500 1855 4.263905 TGAATTTCCTATGCACCCTGAAGT 60.264 41.667 0.00 0.00 0.00 3.01
1501 1856 3.806949 TTTCCTATGCACCCTGAAGTT 57.193 42.857 0.00 0.00 0.00 2.66
1502 1857 3.350219 TTCCTATGCACCCTGAAGTTC 57.650 47.619 0.00 0.00 0.00 3.01
1503 1858 1.559682 TCCTATGCACCCTGAAGTTCC 59.440 52.381 0.00 0.00 0.00 3.62
1504 1859 1.561542 CCTATGCACCCTGAAGTTCCT 59.438 52.381 0.00 0.00 0.00 3.36
1505 1860 2.771943 CCTATGCACCCTGAAGTTCCTA 59.228 50.000 0.00 0.00 0.00 2.94
1506 1861 3.392616 CCTATGCACCCTGAAGTTCCTAT 59.607 47.826 0.00 0.00 0.00 2.57
1507 1862 4.593206 CCTATGCACCCTGAAGTTCCTATA 59.407 45.833 0.00 0.00 0.00 1.31
1508 1863 3.906720 TGCACCCTGAAGTTCCTATAC 57.093 47.619 0.00 0.00 0.00 1.47
1509 1864 3.178046 TGCACCCTGAAGTTCCTATACA 58.822 45.455 0.00 0.00 0.00 2.29
1510 1865 3.055385 TGCACCCTGAAGTTCCTATACAC 60.055 47.826 0.00 0.00 0.00 2.90
1511 1866 3.055385 GCACCCTGAAGTTCCTATACACA 60.055 47.826 0.00 0.00 0.00 3.72
1512 1867 4.564821 GCACCCTGAAGTTCCTATACACAA 60.565 45.833 0.00 0.00 0.00 3.33
1513 1868 5.556915 CACCCTGAAGTTCCTATACACAAA 58.443 41.667 0.00 0.00 0.00 2.83
1514 1869 5.643777 CACCCTGAAGTTCCTATACACAAAG 59.356 44.000 0.00 0.00 0.00 2.77
1515 1870 5.309806 ACCCTGAAGTTCCTATACACAAAGT 59.690 40.000 0.00 0.00 0.00 2.66
1516 1871 6.183361 ACCCTGAAGTTCCTATACACAAAGTT 60.183 38.462 0.00 0.00 0.00 2.66
1517 1872 6.371825 CCCTGAAGTTCCTATACACAAAGTTC 59.628 42.308 0.00 0.00 33.60 3.01
1518 1873 6.090898 CCTGAAGTTCCTATACACAAAGTTCG 59.909 42.308 0.00 0.00 35.01 3.95
1519 1874 6.518493 TGAAGTTCCTATACACAAAGTTCGT 58.482 36.000 0.00 0.00 35.01 3.85
1520 1875 6.422701 TGAAGTTCCTATACACAAAGTTCGTG 59.577 38.462 0.00 0.00 40.32 4.35
1521 1876 6.092955 AGTTCCTATACACAAAGTTCGTGA 57.907 37.500 0.00 0.00 37.80 4.35
1522 1877 6.698380 AGTTCCTATACACAAAGTTCGTGAT 58.302 36.000 0.00 0.00 37.80 3.06
1523 1878 6.812160 AGTTCCTATACACAAAGTTCGTGATC 59.188 38.462 0.00 0.00 37.80 2.92
1524 1879 5.657474 TCCTATACACAAAGTTCGTGATCC 58.343 41.667 0.00 0.00 37.80 3.36
1525 1880 5.186215 TCCTATACACAAAGTTCGTGATCCA 59.814 40.000 0.00 0.00 37.80 3.41
1526 1881 5.291128 CCTATACACAAAGTTCGTGATCCAC 59.709 44.000 0.00 0.00 37.80 4.02
1527 1882 2.218603 ACACAAAGTTCGTGATCCACC 58.781 47.619 0.00 0.00 37.80 4.61
1528 1883 2.217750 CACAAAGTTCGTGATCCACCA 58.782 47.619 0.00 0.00 36.43 4.17
1529 1884 2.032030 CACAAAGTTCGTGATCCACCAC 60.032 50.000 0.00 0.00 36.43 4.16
1530 1885 1.535462 CAAAGTTCGTGATCCACCACC 59.465 52.381 0.00 0.00 33.67 4.61
1531 1886 1.056660 AAGTTCGTGATCCACCACCT 58.943 50.000 0.00 0.00 33.67 4.00
1532 1887 1.933021 AGTTCGTGATCCACCACCTA 58.067 50.000 0.00 0.00 33.67 3.08
1533 1888 1.825474 AGTTCGTGATCCACCACCTAG 59.175 52.381 0.00 0.00 33.67 3.02
1534 1889 1.134788 GTTCGTGATCCACCACCTAGG 60.135 57.143 7.41 7.41 45.67 3.02
1535 1890 0.333652 TCGTGATCCACCACCTAGGA 59.666 55.000 17.98 0.00 41.22 2.94
1536 1891 0.460311 CGTGATCCACCACCTAGGAC 59.540 60.000 17.98 0.00 41.22 3.85
1537 1892 0.460311 GTGATCCACCACCTAGGACG 59.540 60.000 17.98 7.06 41.22 4.79
1538 1893 1.327690 TGATCCACCACCTAGGACGC 61.328 60.000 17.98 0.00 41.22 5.19
1539 1894 2.351336 GATCCACCACCTAGGACGCG 62.351 65.000 17.98 3.53 41.22 6.01
1540 1895 3.379445 CCACCACCTAGGACGCGT 61.379 66.667 17.98 13.85 41.22 6.01
1541 1896 2.181021 CACCACCTAGGACGCGTC 59.819 66.667 30.67 30.67 41.22 5.19
1542 1897 3.437795 ACCACCTAGGACGCGTCG 61.438 66.667 30.99 20.15 41.22 5.12
1543 1898 3.437795 CCACCTAGGACGCGTCGT 61.438 66.667 33.38 33.38 45.10 4.34
1544 1899 2.202440 CACCTAGGACGCGTCGTG 60.202 66.667 36.70 29.94 41.37 4.35
1545 1900 3.437795 ACCTAGGACGCGTCGTGG 61.438 66.667 36.70 33.62 41.37 4.94
1546 1901 4.849329 CCTAGGACGCGTCGTGGC 62.849 72.222 36.70 22.17 41.37 5.01
1555 1910 3.475774 CGTCGTGGCGCTGTAACC 61.476 66.667 7.64 0.00 0.00 2.85
1556 1911 2.356553 GTCGTGGCGCTGTAACCA 60.357 61.111 7.64 0.00 0.00 3.67
1557 1912 1.957186 GTCGTGGCGCTGTAACCAA 60.957 57.895 7.64 0.00 37.79 3.67
1558 1913 1.004320 TCGTGGCGCTGTAACCAAT 60.004 52.632 7.64 0.00 37.79 3.16
1559 1914 1.134487 CGTGGCGCTGTAACCAATG 59.866 57.895 7.64 0.00 37.79 2.82
1560 1915 1.506262 GTGGCGCTGTAACCAATGG 59.494 57.895 7.64 0.00 37.79 3.16
1561 1916 1.074072 TGGCGCTGTAACCAATGGT 59.926 52.632 7.64 0.00 37.65 3.55
1563 1918 0.170339 GGCGCTGTAACCAATGGTTC 59.830 55.000 22.32 13.41 43.05 3.62
1564 1919 0.878416 GCGCTGTAACCAATGGTTCA 59.122 50.000 22.32 16.99 43.05 3.18
1565 1920 1.472480 GCGCTGTAACCAATGGTTCAT 59.528 47.619 22.32 0.00 43.05 2.57
1566 1921 2.731968 GCGCTGTAACCAATGGTTCATG 60.732 50.000 22.32 12.99 43.05 3.07
1567 1922 2.487762 CGCTGTAACCAATGGTTCATGT 59.512 45.455 22.32 0.00 43.05 3.21
1568 1923 3.670359 CGCTGTAACCAATGGTTCATGTG 60.670 47.826 22.32 14.23 43.05 3.21
1569 1924 3.367292 GCTGTAACCAATGGTTCATGTGG 60.367 47.826 22.32 8.25 43.05 4.17
1570 1925 2.560542 TGTAACCAATGGTTCATGTGGC 59.439 45.455 22.32 5.20 43.05 5.01
1571 1926 1.714541 AACCAATGGTTCATGTGGCA 58.285 45.000 12.63 0.00 43.05 4.92
1572 1927 0.968405 ACCAATGGTTCATGTGGCAC 59.032 50.000 11.55 11.55 34.27 5.01
1573 1928 0.967662 CCAATGGTTCATGTGGCACA 59.032 50.000 24.36 24.36 0.00 4.57
1586 1941 1.961793 TGGCACACCTGAAACTGTAC 58.038 50.000 0.00 0.00 36.63 2.90
1587 1942 1.235724 GGCACACCTGAAACTGTACC 58.764 55.000 0.00 0.00 0.00 3.34
1588 1943 1.202770 GGCACACCTGAAACTGTACCT 60.203 52.381 0.00 0.00 0.00 3.08
1589 1944 1.873591 GCACACCTGAAACTGTACCTG 59.126 52.381 0.00 0.00 0.00 4.00
1590 1945 2.745152 GCACACCTGAAACTGTACCTGT 60.745 50.000 0.00 0.00 0.00 4.00
1591 1946 3.131396 CACACCTGAAACTGTACCTGTC 58.869 50.000 0.00 0.00 0.00 3.51
1592 1947 2.769663 ACACCTGAAACTGTACCTGTCA 59.230 45.455 0.00 0.00 0.00 3.58
1593 1948 3.199071 ACACCTGAAACTGTACCTGTCAA 59.801 43.478 0.00 0.00 0.00 3.18
1594 1949 3.809832 CACCTGAAACTGTACCTGTCAAG 59.190 47.826 0.00 0.00 0.00 3.02
1595 1950 2.808543 CCTGAAACTGTACCTGTCAAGC 59.191 50.000 0.00 0.00 0.00 4.01
1596 1951 2.808543 CTGAAACTGTACCTGTCAAGCC 59.191 50.000 0.00 0.00 0.00 4.35
1597 1952 2.438021 TGAAACTGTACCTGTCAAGCCT 59.562 45.455 0.00 0.00 0.00 4.58
1598 1953 2.841442 AACTGTACCTGTCAAGCCTC 57.159 50.000 0.00 0.00 0.00 4.70
1599 1954 0.977395 ACTGTACCTGTCAAGCCTCC 59.023 55.000 0.00 0.00 0.00 4.30
1600 1955 0.250513 CTGTACCTGTCAAGCCTCCC 59.749 60.000 0.00 0.00 0.00 4.30
1601 1956 1.198759 TGTACCTGTCAAGCCTCCCC 61.199 60.000 0.00 0.00 0.00 4.81
1602 1957 1.987855 TACCTGTCAAGCCTCCCCG 60.988 63.158 0.00 0.00 0.00 5.73
1603 1958 2.741878 TACCTGTCAAGCCTCCCCGT 62.742 60.000 0.00 0.00 0.00 5.28
1604 1959 2.046892 CTGTCAAGCCTCCCCGTG 60.047 66.667 0.00 0.00 0.00 4.94
1605 1960 2.525629 TGTCAAGCCTCCCCGTGA 60.526 61.111 0.00 0.00 0.00 4.35
1606 1961 2.047179 GTCAAGCCTCCCCGTGAC 60.047 66.667 0.00 0.00 37.14 3.67
1607 1962 2.525629 TCAAGCCTCCCCGTGACA 60.526 61.111 0.00 0.00 0.00 3.58
1608 1963 1.918293 TCAAGCCTCCCCGTGACAT 60.918 57.895 0.00 0.00 0.00 3.06
1609 1964 1.450312 CAAGCCTCCCCGTGACATC 60.450 63.158 0.00 0.00 0.00 3.06
1610 1965 1.613630 AAGCCTCCCCGTGACATCT 60.614 57.895 0.00 0.00 0.00 2.90
1611 1966 1.617947 AAGCCTCCCCGTGACATCTC 61.618 60.000 0.00 0.00 0.00 2.75
1612 1967 3.095347 GCCTCCCCGTGACATCTCC 62.095 68.421 0.00 0.00 0.00 3.71
1613 1968 2.786495 CCTCCCCGTGACATCTCCG 61.786 68.421 0.00 0.00 0.00 4.63
1614 1969 1.753078 CTCCCCGTGACATCTCCGA 60.753 63.158 0.00 0.00 0.00 4.55
1615 1970 1.304630 TCCCCGTGACATCTCCGAA 60.305 57.895 0.00 0.00 0.00 4.30
1616 1971 1.141881 CCCCGTGACATCTCCGAAG 59.858 63.158 0.00 0.00 0.00 3.79
1629 1984 3.362262 CGAAGGTCCTGGACACGA 58.638 61.111 26.94 0.00 33.68 4.35
1630 1985 1.663739 CGAAGGTCCTGGACACGAA 59.336 57.895 26.94 0.00 33.68 3.85
1631 1986 0.032952 CGAAGGTCCTGGACACGAAA 59.967 55.000 26.94 0.00 33.68 3.46
1632 1987 1.337823 CGAAGGTCCTGGACACGAAAT 60.338 52.381 26.94 7.02 33.68 2.17
1633 1988 2.779506 GAAGGTCCTGGACACGAAATT 58.220 47.619 26.94 11.65 33.68 1.82
1634 1989 2.474410 AGGTCCTGGACACGAAATTC 57.526 50.000 26.94 8.12 33.68 2.17
1635 1990 1.003233 AGGTCCTGGACACGAAATTCC 59.997 52.381 26.94 7.58 33.68 3.01
1636 1991 1.003233 GGTCCTGGACACGAAATTCCT 59.997 52.381 26.94 0.00 33.68 3.36
1637 1992 2.235402 GGTCCTGGACACGAAATTCCTA 59.765 50.000 26.94 0.00 33.68 2.94
1638 1993 3.522553 GTCCTGGACACGAAATTCCTAG 58.477 50.000 21.70 0.00 32.55 3.02
1639 1994 3.194968 GTCCTGGACACGAAATTCCTAGA 59.805 47.826 21.70 0.00 32.55 2.43
1640 1995 3.194968 TCCTGGACACGAAATTCCTAGAC 59.805 47.826 0.00 0.00 32.55 2.59
1641 1996 3.056107 CCTGGACACGAAATTCCTAGACA 60.056 47.826 0.00 0.00 32.55 3.41
1642 1997 3.921677 TGGACACGAAATTCCTAGACAC 58.078 45.455 0.00 0.00 32.55 3.67
1643 1998 3.259902 GGACACGAAATTCCTAGACACC 58.740 50.000 0.00 0.00 0.00 4.16
1644 1999 3.259902 GACACGAAATTCCTAGACACCC 58.740 50.000 0.00 0.00 0.00 4.61
1645 2000 2.904434 ACACGAAATTCCTAGACACCCT 59.096 45.455 0.00 0.00 0.00 4.34
1646 2001 4.091549 ACACGAAATTCCTAGACACCCTA 58.908 43.478 0.00 0.00 0.00 3.53
1647 2002 4.715297 ACACGAAATTCCTAGACACCCTAT 59.285 41.667 0.00 0.00 0.00 2.57
1648 2003 5.189145 ACACGAAATTCCTAGACACCCTATT 59.811 40.000 0.00 0.00 0.00 1.73
1649 2004 5.753921 CACGAAATTCCTAGACACCCTATTC 59.246 44.000 0.00 0.00 0.00 1.75
1650 2005 5.424252 ACGAAATTCCTAGACACCCTATTCA 59.576 40.000 0.00 0.00 0.00 2.57
1651 2006 6.099845 ACGAAATTCCTAGACACCCTATTCAT 59.900 38.462 0.00 0.00 0.00 2.57
1652 2007 6.425114 CGAAATTCCTAGACACCCTATTCATG 59.575 42.308 0.00 0.00 0.00 3.07
1653 2008 7.451731 AAATTCCTAGACACCCTATTCATGA 57.548 36.000 0.00 0.00 0.00 3.07
1654 2009 7.639062 AATTCCTAGACACCCTATTCATGAT 57.361 36.000 0.00 0.00 0.00 2.45
1655 2010 6.672266 TTCCTAGACACCCTATTCATGATC 57.328 41.667 0.00 0.00 0.00 2.92
1656 2011 5.087323 TCCTAGACACCCTATTCATGATCC 58.913 45.833 0.00 0.00 0.00 3.36
1657 2012 4.840680 CCTAGACACCCTATTCATGATCCA 59.159 45.833 0.00 0.00 0.00 3.41
1658 2013 4.696479 AGACACCCTATTCATGATCCAC 57.304 45.455 0.00 0.00 0.00 4.02
1659 2014 3.392616 AGACACCCTATTCATGATCCACC 59.607 47.826 0.00 0.00 0.00 4.61
1660 2015 3.122480 ACACCCTATTCATGATCCACCA 58.878 45.455 0.00 0.00 0.00 4.17
1661 2016 3.117888 ACACCCTATTCATGATCCACCAC 60.118 47.826 0.00 0.00 0.00 4.16
1662 2017 2.443255 ACCCTATTCATGATCCACCACC 59.557 50.000 0.00 0.00 0.00 4.61
1663 2018 2.713167 CCCTATTCATGATCCACCACCT 59.287 50.000 0.00 0.00 0.00 4.00
1664 2019 3.909995 CCCTATTCATGATCCACCACCTA 59.090 47.826 0.00 0.00 0.00 3.08
1665 2020 4.019860 CCCTATTCATGATCCACCACCTAG 60.020 50.000 0.00 0.00 0.00 3.02
1666 2021 4.019860 CCTATTCATGATCCACCACCTAGG 60.020 50.000 7.41 7.41 45.67 3.02
1667 2022 2.866923 TCATGATCCACCACCTAGGA 57.133 50.000 17.98 0.00 41.22 2.94
1668 2023 2.398588 TCATGATCCACCACCTAGGAC 58.601 52.381 17.98 0.00 41.22 3.85
1669 2024 1.069204 CATGATCCACCACCTAGGACG 59.931 57.143 17.98 7.06 41.22 4.79
1670 2025 1.327690 TGATCCACCACCTAGGACGC 61.328 60.000 17.98 0.00 41.22 5.19
1671 2026 1.305802 ATCCACCACCTAGGACGCA 60.306 57.895 17.98 0.00 41.22 5.24
1672 2027 0.691078 ATCCACCACCTAGGACGCAT 60.691 55.000 17.98 0.00 41.22 4.73
1673 2028 1.144057 CCACCACCTAGGACGCATC 59.856 63.158 17.98 0.00 41.22 3.91
1674 2029 1.226974 CACCACCTAGGACGCATCG 60.227 63.158 17.98 0.00 41.22 3.84
1675 2030 1.681327 ACCACCTAGGACGCATCGT 60.681 57.895 17.98 0.00 45.10 3.73
1676 2031 1.226974 CCACCTAGGACGCATCGTG 60.227 63.158 17.98 0.00 41.37 4.35
1677 2032 1.226974 CACCTAGGACGCATCGTGG 60.227 63.158 17.98 0.00 41.37 4.94
1678 2033 2.279517 CCTAGGACGCATCGTGGC 60.280 66.667 1.05 0.00 41.37 5.01
1686 2041 2.399611 GCATCGTGGCGCTGTAAC 59.600 61.111 7.64 0.00 0.00 2.50
1687 2042 3.089784 CATCGTGGCGCTGTAACC 58.910 61.111 7.64 0.00 0.00 2.85
1688 2043 1.739929 CATCGTGGCGCTGTAACCA 60.740 57.895 7.64 0.00 0.00 3.67
1689 2044 1.004320 ATCGTGGCGCTGTAACCAA 60.004 52.632 7.64 0.00 37.79 3.67
1690 2045 0.392461 ATCGTGGCGCTGTAACCAAT 60.392 50.000 7.64 0.00 37.79 3.16
1691 2046 1.134487 CGTGGCGCTGTAACCAATG 59.866 57.895 7.64 0.00 37.79 2.82
1692 2047 1.506262 GTGGCGCTGTAACCAATGG 59.494 57.895 7.64 0.00 37.79 3.16
1693 2048 1.074072 TGGCGCTGTAACCAATGGT 59.926 52.632 7.64 0.00 37.65 3.55
1695 2050 0.601057 GGCGCTGTAACCAATGGTTT 59.399 50.000 23.84 7.61 44.33 3.27
1696 2051 1.402325 GGCGCTGTAACCAATGGTTTC 60.402 52.381 23.84 18.41 44.33 2.78
1697 2052 1.539827 GCGCTGTAACCAATGGTTTCT 59.460 47.619 23.84 1.00 44.33 2.52
1698 2053 2.668279 GCGCTGTAACCAATGGTTTCTG 60.668 50.000 23.84 21.05 44.33 3.02
1699 2054 2.552315 CGCTGTAACCAATGGTTTCTGT 59.448 45.455 23.84 0.15 44.33 3.41
1700 2055 3.609175 CGCTGTAACCAATGGTTTCTGTG 60.609 47.826 23.84 21.95 44.33 3.66
1701 2056 3.305335 GCTGTAACCAATGGTTTCTGTGG 60.305 47.826 23.84 10.57 44.33 4.17
1702 2057 2.625790 TGTAACCAATGGTTTCTGTGGC 59.374 45.455 23.84 5.99 44.33 5.01
1703 2058 1.786937 AACCAATGGTTTCTGTGGCA 58.213 45.000 12.63 0.00 44.33 4.92
1704 2059 1.039856 ACCAATGGTTTCTGTGGCAC 58.960 50.000 11.55 11.55 34.27 5.01
1705 2060 1.039068 CCAATGGTTTCTGTGGCACA 58.961 50.000 20.76 20.76 0.00 4.57
1716 2071 2.203337 TGGCACACCTGAACCTGC 60.203 61.111 0.00 0.00 36.63 4.85
1717 2072 2.203337 GGCACACCTGAACCTGCA 60.203 61.111 0.00 0.00 0.00 4.41
1718 2073 2.555547 GGCACACCTGAACCTGCAC 61.556 63.158 0.00 0.00 0.00 4.57
1719 2074 2.555547 GCACACCTGAACCTGCACC 61.556 63.158 0.00 0.00 0.00 5.01
1720 2075 1.149174 CACACCTGAACCTGCACCT 59.851 57.895 0.00 0.00 0.00 4.00
1721 2076 1.149174 ACACCTGAACCTGCACCTG 59.851 57.895 0.00 0.00 0.00 4.00
1722 2077 1.149174 CACCTGAACCTGCACCTGT 59.851 57.895 0.00 0.00 0.00 4.00
1723 2078 0.396435 CACCTGAACCTGCACCTGTA 59.604 55.000 0.00 0.00 0.00 2.74
1724 2079 0.396811 ACCTGAACCTGCACCTGTAC 59.603 55.000 0.00 0.00 0.00 2.90
1725 2080 0.396435 CCTGAACCTGCACCTGTACA 59.604 55.000 0.00 0.00 0.00 2.90
1726 2081 1.003580 CCTGAACCTGCACCTGTACAT 59.996 52.381 0.00 0.00 0.00 2.29
1727 2082 2.079158 CTGAACCTGCACCTGTACATG 58.921 52.381 0.00 0.00 0.00 3.21
1728 2083 1.419762 TGAACCTGCACCTGTACATGT 59.580 47.619 2.69 2.69 0.00 3.21
1729 2084 2.635427 TGAACCTGCACCTGTACATGTA 59.365 45.455 0.08 0.08 0.00 2.29
1730 2085 2.762535 ACCTGCACCTGTACATGTAC 57.237 50.000 25.99 25.99 36.63 2.90
1731 2086 1.278127 ACCTGCACCTGTACATGTACC 59.722 52.381 28.67 15.73 35.26 3.34
1732 2087 1.406887 CCTGCACCTGTACATGTACCC 60.407 57.143 28.67 14.43 35.26 3.69
1733 2088 0.248012 TGCACCTGTACATGTACCCG 59.752 55.000 28.67 21.18 35.26 5.28
1734 2089 0.248289 GCACCTGTACATGTACCCGT 59.752 55.000 28.67 21.75 35.26 5.28
1735 2090 1.738030 GCACCTGTACATGTACCCGTC 60.738 57.143 28.67 15.54 35.26 4.79
1736 2091 1.546923 CACCTGTACATGTACCCGTCA 59.453 52.381 28.67 12.25 35.26 4.35
1737 2092 2.028839 CACCTGTACATGTACCCGTCAA 60.029 50.000 28.67 11.54 35.26 3.18
1738 2093 2.232941 ACCTGTACATGTACCCGTCAAG 59.767 50.000 28.67 18.99 35.26 3.02
1739 2094 2.268298 CTGTACATGTACCCGTCAAGC 58.732 52.381 28.67 5.59 35.26 4.01
1740 2095 1.066716 TGTACATGTACCCGTCAAGCC 60.067 52.381 28.67 4.91 35.26 4.35
1741 2096 1.206371 GTACATGTACCCGTCAAGCCT 59.794 52.381 23.03 0.00 0.00 4.58
1742 2097 0.249398 ACATGTACCCGTCAAGCCTC 59.751 55.000 0.00 0.00 0.00 4.70
1743 2098 0.462047 CATGTACCCGTCAAGCCTCC 60.462 60.000 0.00 0.00 0.00 4.30
1744 2099 0.617820 ATGTACCCGTCAAGCCTCCT 60.618 55.000 0.00 0.00 0.00 3.69
1747 2102 0.396695 TACCCGTCAAGCCTCCTAGG 60.397 60.000 0.82 0.82 38.80 3.02
1771 2126 2.341846 TCCCCGAATTTCCTATGCAC 57.658 50.000 0.00 0.00 0.00 4.57
1822 2177 3.437795 CCACCTAGGACGCGTCGT 61.438 66.667 33.38 33.38 45.10 4.34
1824 2179 2.359107 ACCTAGGACGCGTCGTGA 60.359 61.111 36.70 21.87 41.37 4.35
1844 2199 2.747446 GACGCTGTAACCAATGGTTCAT 59.253 45.455 22.32 0.00 43.05 2.57
1935 2290 5.970289 TCCTAGACACCCTATTCATGATCT 58.030 41.667 0.00 0.00 0.00 2.75
1954 2309 0.394762 TACCACCTAGGACGCATCGT 60.395 55.000 17.98 2.85 45.10 3.73
2022 2377 2.260822 ACATGTACCTGTCAAGCCTCT 58.739 47.619 0.00 0.00 0.00 3.69
2025 2380 2.325484 TGTACCTGTCAAGCCTCTCAA 58.675 47.619 0.00 0.00 0.00 3.02
2088 2443 3.431766 CCACGTAGGCCTAAAGCTGTAAT 60.432 47.826 15.83 0.00 43.05 1.89
2096 2451 3.679083 GCCTAAAGCTGTAATCGACCAGT 60.679 47.826 9.52 0.00 38.99 4.00
2114 2469 1.903404 TCTGCACAGTGCTCTCCGA 60.903 57.895 25.83 11.51 45.31 4.55
2132 2487 0.037232 GACTGCTCCTGCCGTTTAGT 60.037 55.000 0.00 0.00 36.78 2.24
2193 2565 2.397751 GCTTCCTGCACATACGCAT 58.602 52.632 0.00 0.00 42.06 4.73
2239 2611 0.249531 TTACTCCGTTGCGTTGCAGA 60.250 50.000 0.00 0.00 40.61 4.26
2278 2650 1.072965 CCAGAAGGTCCTTGTTCAGCT 59.927 52.381 9.46 0.00 0.00 4.24
2293 2676 1.704628 TCAGCTTTCATCCACTTCCCA 59.295 47.619 0.00 0.00 0.00 4.37
2307 2690 1.009183 CTTCCCAGGGGGTCTACCTTA 59.991 57.143 5.33 0.00 44.74 2.69
2311 2695 2.258109 CCAGGGGGTCTACCTTATAGC 58.742 57.143 0.00 0.00 40.03 2.97
2313 2883 3.588569 CAGGGGGTCTACCTTATAGCTT 58.411 50.000 0.00 0.00 40.03 3.74
2315 2885 2.038689 GGGGGTCTACCTTATAGCTTGC 59.961 54.545 0.00 0.00 40.03 4.01
2463 3209 3.733077 GCTTCAGCAAGAACATATGGCAC 60.733 47.826 7.80 0.00 41.59 5.01
2470 3216 1.561076 AGAACATATGGCACCAGAGCA 59.439 47.619 7.80 0.00 35.83 4.26
2546 4147 2.648059 GCAATAGAGCAGGTTGGTCAT 58.352 47.619 10.46 0.69 46.52 3.06
2587 4206 2.489329 CTCCATGCAAATCGTTGTCCTT 59.511 45.455 0.00 0.00 37.06 3.36
2588 4207 2.228582 TCCATGCAAATCGTTGTCCTTG 59.771 45.455 0.00 0.00 37.06 3.61
2589 4208 2.030007 CCATGCAAATCGTTGTCCTTGT 60.030 45.455 0.00 0.00 37.06 3.16
2590 4209 2.772568 TGCAAATCGTTGTCCTTGTG 57.227 45.000 0.00 0.00 37.06 3.33
2591 4210 1.336440 TGCAAATCGTTGTCCTTGTGG 59.664 47.619 0.00 0.00 37.06 4.17
2594 4213 1.234615 AATCGTTGTCCTTGTGGCGG 61.235 55.000 0.00 0.00 0.00 6.13
2595 4214 3.353836 CGTTGTCCTTGTGGCGGG 61.354 66.667 0.00 0.00 0.00 6.13
2596 4215 2.983592 GTTGTCCTTGTGGCGGGG 60.984 66.667 0.00 0.00 0.00 5.73
2597 4216 3.494254 TTGTCCTTGTGGCGGGGT 61.494 61.111 0.00 0.00 0.00 4.95
2598 4217 3.485346 TTGTCCTTGTGGCGGGGTC 62.485 63.158 0.00 0.00 0.00 4.46
2599 4218 3.948719 GTCCTTGTGGCGGGGTCA 61.949 66.667 0.00 0.00 0.00 4.02
2600 4219 3.948719 TCCTTGTGGCGGGGTCAC 61.949 66.667 0.00 0.00 38.79 3.67
2601 4220 4.263572 CCTTGTGGCGGGGTCACA 62.264 66.667 0.00 0.00 46.79 3.58
2604 4223 3.484806 TGTGGCGGGGTCACAACT 61.485 61.111 0.00 0.00 45.44 3.16
2796 4419 0.734889 CATGCGTTTCACCTCCCATC 59.265 55.000 0.00 0.00 0.00 3.51
2805 4455 1.008815 TCACCTCCCATCCTGTGATCT 59.991 52.381 0.00 0.00 33.09 2.75
2852 4502 4.320844 AGGTGGACTCAACTGCCT 57.679 55.556 0.00 0.00 39.91 4.75
2932 4582 2.279173 GGGGCTGGAATCACCCTATAT 58.721 52.381 5.42 0.00 43.68 0.86
3026 4676 4.527816 TGTTGGTAGGGTTACGAGTAACAT 59.472 41.667 22.64 14.91 45.32 2.71
3075 4725 5.049060 GTCTCAGTCGATGCTATACTCATGT 60.049 44.000 0.00 0.00 0.00 3.21
3099 4749 4.406648 TCTTACATCAAGATCCGTGCAT 57.593 40.909 0.00 0.00 38.39 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.642540 GGTCATCCACAGAGAAAATCAAAAAC 59.357 38.462 0.00 0.00 0.00 2.43
56 58 2.991190 CTGCAGCTGCGAAATTCAAAAT 59.009 40.909 32.11 0.00 45.83 1.82
122 124 7.044589 ACAACTTTCATGTTGAACGTTTTTC 57.955 32.000 13.31 0.00 43.39 2.29
160 162 1.885887 CCCAAAAGCAATCTTGACCGA 59.114 47.619 0.00 0.00 31.78 4.69
183 185 3.328382 AAACGATCTCGGATGGAAACA 57.672 42.857 4.44 0.00 45.22 2.83
245 247 5.163632 GGTCCGAACTTTCCAAAACTGTTTA 60.164 40.000 6.16 0.00 0.00 2.01
285 287 2.322658 TCACGTCCAAAACCCTAGTCT 58.677 47.619 0.00 0.00 0.00 3.24
329 331 0.543174 AAGAGACGGCTGGACTTCCT 60.543 55.000 0.00 0.00 36.82 3.36
343 345 8.548877 GCCATCACCCCTTAAATATATAAGAGA 58.451 37.037 0.00 0.00 35.35 3.10
354 356 0.923358 ATCGGCCATCACCCCTTAAA 59.077 50.000 2.24 0.00 0.00 1.52
601 609 1.017177 GTACGCAAGACAATCCGGCA 61.017 55.000 0.00 0.00 43.62 5.69
665 674 4.738998 TACCTTCGACGCCGGGGA 62.739 66.667 27.23 0.00 36.24 4.81
713 722 4.385405 GCTCGGCTGCTGGTCTGT 62.385 66.667 8.89 0.00 0.00 3.41
747 756 4.698583 ACACTCTACTCGTACCATTGAC 57.301 45.455 0.00 0.00 0.00 3.18
779 788 2.985282 ACAAGTGGGTGGCATGCG 60.985 61.111 12.44 0.00 0.00 4.73
800 809 0.883833 CAAGAGGGTGGCATGTGTTC 59.116 55.000 0.00 0.00 0.00 3.18
807 816 0.770499 TTCATCACAAGAGGGTGGCA 59.230 50.000 0.00 0.00 39.27 4.92
808 817 1.168714 GTTCATCACAAGAGGGTGGC 58.831 55.000 0.00 0.00 39.27 5.01
809 818 2.038952 TCTGTTCATCACAAGAGGGTGG 59.961 50.000 0.00 0.00 39.27 4.61
810 819 3.244353 ACTCTGTTCATCACAAGAGGGTG 60.244 47.826 3.80 0.00 36.08 4.61
811 820 2.975489 ACTCTGTTCATCACAAGAGGGT 59.025 45.455 3.80 0.00 36.08 4.34
812 821 3.244353 ACACTCTGTTCATCACAAGAGGG 60.244 47.826 0.00 0.00 38.78 4.30
813 822 3.744942 CACACTCTGTTCATCACAAGAGG 59.255 47.826 3.80 0.00 36.08 3.69
814 823 4.210746 CACACACTCTGTTCATCACAAGAG 59.789 45.833 0.00 0.00 37.01 2.85
815 824 4.122046 CACACACTCTGTTCATCACAAGA 58.878 43.478 0.00 0.00 33.87 3.02
816 825 3.249320 CCACACACTCTGTTCATCACAAG 59.751 47.826 0.00 0.00 33.87 3.16
817 826 3.118445 TCCACACACTCTGTTCATCACAA 60.118 43.478 0.00 0.00 33.87 3.33
818 827 2.433970 TCCACACACTCTGTTCATCACA 59.566 45.455 0.00 0.00 0.00 3.58
819 828 3.062763 CTCCACACACTCTGTTCATCAC 58.937 50.000 0.00 0.00 0.00 3.06
820 829 2.700371 ACTCCACACACTCTGTTCATCA 59.300 45.455 0.00 0.00 0.00 3.07
821 830 3.321497 GACTCCACACACTCTGTTCATC 58.679 50.000 0.00 0.00 0.00 2.92
822 831 2.288457 CGACTCCACACACTCTGTTCAT 60.288 50.000 0.00 0.00 0.00 2.57
823 832 1.067060 CGACTCCACACACTCTGTTCA 59.933 52.381 0.00 0.00 0.00 3.18
824 833 1.067212 ACGACTCCACACACTCTGTTC 59.933 52.381 0.00 0.00 0.00 3.18
825 834 1.067212 GACGACTCCACACACTCTGTT 59.933 52.381 0.00 0.00 0.00 3.16
826 835 0.669077 GACGACTCCACACACTCTGT 59.331 55.000 0.00 0.00 0.00 3.41
827 836 0.386100 CGACGACTCCACACACTCTG 60.386 60.000 0.00 0.00 0.00 3.35
828 837 1.516365 CCGACGACTCCACACACTCT 61.516 60.000 0.00 0.00 0.00 3.24
829 838 1.081376 CCGACGACTCCACACACTC 60.081 63.158 0.00 0.00 0.00 3.51
841 850 2.280552 CCTTGACCTTCCCCGACGA 61.281 63.158 0.00 0.00 0.00 4.20
844 853 0.546747 ATGACCTTGACCTTCCCCGA 60.547 55.000 0.00 0.00 0.00 5.14
858 867 0.749454 CCCAGCTTACAGCCATGACC 60.749 60.000 0.00 0.00 43.77 4.02
885 898 2.606378 AGTGGACTTTCTAACCTCCGT 58.394 47.619 0.00 0.00 0.00 4.69
887 900 5.934402 TCATAGTGGACTTTCTAACCTCC 57.066 43.478 0.00 0.00 0.00 4.30
888 901 6.310711 CGTTTCATAGTGGACTTTCTAACCTC 59.689 42.308 0.00 0.00 0.00 3.85
889 902 6.164176 CGTTTCATAGTGGACTTTCTAACCT 58.836 40.000 0.00 0.00 0.00 3.50
918 1266 7.310858 CCTGGCCCCGGTATTTATATATATACC 60.311 44.444 22.87 22.87 41.79 2.73
919 1267 7.455638 TCCTGGCCCCGGTATTTATATATATAC 59.544 40.741 12.46 12.46 0.00 1.47
921 1269 6.395598 TCCTGGCCCCGGTATTTATATATAT 58.604 40.000 0.00 0.00 0.00 0.86
957 1312 1.066858 GGCAGAGGACAAGTTGATCGA 60.067 52.381 10.54 0.00 0.00 3.59
992 1347 2.220313 GAGCAAGAGCCATCCTTGATC 58.780 52.381 7.02 6.26 45.62 2.92
1005 1360 3.379445 GACGACCGGGGAGCAAGA 61.379 66.667 6.32 0.00 0.00 3.02
1122 1477 1.152440 CGGAGGGGTATCAGCTCCT 60.152 63.158 0.00 0.00 32.39 3.69
1160 1515 3.750371 CATTAACCTGTGGTGACTGGAA 58.250 45.455 5.24 0.00 42.49 3.53
1161 1516 2.552155 GCATTAACCTGTGGTGACTGGA 60.552 50.000 5.24 0.00 42.49 3.86
1180 1535 2.110835 TGCGTGCAGGAAGAAGCA 59.889 55.556 11.29 0.00 38.65 3.91
1207 1562 4.079253 GGACTGATAGCTGGAACCAAAAA 58.921 43.478 0.00 0.00 0.00 1.94
1208 1563 3.330701 AGGACTGATAGCTGGAACCAAAA 59.669 43.478 0.00 0.00 0.00 2.44
1228 1583 7.657761 TGTTAGCTTGTTCTAGAAGAGAAAAGG 59.342 37.037 16.31 2.03 45.90 3.11
1229 1584 8.594881 TGTTAGCTTGTTCTAGAAGAGAAAAG 57.405 34.615 16.31 11.43 45.90 2.27
1233 1588 6.902771 ACTGTTAGCTTGTTCTAGAAGAGA 57.097 37.500 16.31 2.18 0.00 3.10
1283 1638 0.461870 TTCGGGCATGAACGATCTGG 60.462 55.000 12.00 0.00 39.06 3.86
1311 1666 3.572642 TCCTGATATGTACGTGGACCAT 58.427 45.455 0.00 0.00 0.00 3.55
1312 1667 3.021177 TCCTGATATGTACGTGGACCA 57.979 47.619 0.00 0.00 0.00 4.02
1337 1692 0.250295 TGAAGTGGCCGAAGAACAGG 60.250 55.000 0.00 0.00 0.00 4.00
1339 1694 1.522668 CATGAAGTGGCCGAAGAACA 58.477 50.000 0.00 0.00 0.00 3.18
1372 1727 3.423154 GGGGCGTTCAGACAAGCG 61.423 66.667 0.00 0.00 0.00 4.68
1468 1823 3.160269 CATAGGAAATTCAGGGATGGCC 58.840 50.000 0.00 0.00 0.00 5.36
1469 1824 2.560105 GCATAGGAAATTCAGGGATGGC 59.440 50.000 0.00 0.00 0.00 4.40
1470 1825 3.571401 GTGCATAGGAAATTCAGGGATGG 59.429 47.826 0.00 0.00 0.00 3.51
1471 1826 3.571401 GGTGCATAGGAAATTCAGGGATG 59.429 47.826 0.00 0.00 0.00 3.51
1472 1827 3.437052 GGGTGCATAGGAAATTCAGGGAT 60.437 47.826 0.00 0.00 0.00 3.85
1473 1828 2.091885 GGGTGCATAGGAAATTCAGGGA 60.092 50.000 0.00 0.00 0.00 4.20
1474 1829 2.091665 AGGGTGCATAGGAAATTCAGGG 60.092 50.000 0.00 0.00 0.00 4.45
1475 1830 2.954318 CAGGGTGCATAGGAAATTCAGG 59.046 50.000 0.00 0.00 0.00 3.86
1476 1831 3.889815 TCAGGGTGCATAGGAAATTCAG 58.110 45.455 0.00 0.00 0.00 3.02
1477 1832 4.263905 ACTTCAGGGTGCATAGGAAATTCA 60.264 41.667 0.00 0.00 0.00 2.57
1478 1833 4.273318 ACTTCAGGGTGCATAGGAAATTC 58.727 43.478 0.00 0.00 0.00 2.17
1479 1834 4.322057 ACTTCAGGGTGCATAGGAAATT 57.678 40.909 0.00 0.00 0.00 1.82
1480 1835 4.273318 GAACTTCAGGGTGCATAGGAAAT 58.727 43.478 0.00 0.00 0.00 2.17
1481 1836 3.561313 GGAACTTCAGGGTGCATAGGAAA 60.561 47.826 0.00 0.00 0.00 3.13
1482 1837 2.026262 GGAACTTCAGGGTGCATAGGAA 60.026 50.000 0.00 0.00 0.00 3.36
1483 1838 1.559682 GGAACTTCAGGGTGCATAGGA 59.440 52.381 0.00 0.00 0.00 2.94
1484 1839 1.561542 AGGAACTTCAGGGTGCATAGG 59.438 52.381 0.00 0.00 27.25 2.57
1485 1840 4.696479 ATAGGAACTTCAGGGTGCATAG 57.304 45.455 0.00 0.00 41.75 2.23
1486 1841 4.966168 TGTATAGGAACTTCAGGGTGCATA 59.034 41.667 0.00 0.00 41.75 3.14
1487 1842 3.780294 TGTATAGGAACTTCAGGGTGCAT 59.220 43.478 0.00 0.00 41.75 3.96
1488 1843 3.055385 GTGTATAGGAACTTCAGGGTGCA 60.055 47.826 0.00 0.00 41.75 4.57
1489 1844 3.055385 TGTGTATAGGAACTTCAGGGTGC 60.055 47.826 0.00 0.00 41.75 5.01
1490 1845 4.819105 TGTGTATAGGAACTTCAGGGTG 57.181 45.455 0.00 0.00 41.75 4.61
1491 1846 5.309806 ACTTTGTGTATAGGAACTTCAGGGT 59.690 40.000 0.00 0.00 41.75 4.34
1492 1847 5.805728 ACTTTGTGTATAGGAACTTCAGGG 58.194 41.667 0.00 0.00 41.75 4.45
1493 1848 6.090898 CGAACTTTGTGTATAGGAACTTCAGG 59.909 42.308 0.00 0.00 41.75 3.86
1494 1849 6.645415 ACGAACTTTGTGTATAGGAACTTCAG 59.355 38.462 0.00 0.00 41.75 3.02
1495 1850 6.422701 CACGAACTTTGTGTATAGGAACTTCA 59.577 38.462 1.33 0.00 34.34 3.02
1496 1851 6.643770 TCACGAACTTTGTGTATAGGAACTTC 59.356 38.462 8.71 0.00 38.07 3.01
1497 1852 6.518493 TCACGAACTTTGTGTATAGGAACTT 58.482 36.000 8.71 0.00 38.07 2.66
1498 1853 6.092955 TCACGAACTTTGTGTATAGGAACT 57.907 37.500 8.71 0.00 39.59 3.01
1499 1854 6.035758 GGATCACGAACTTTGTGTATAGGAAC 59.964 42.308 8.71 0.00 38.48 3.62
1500 1855 6.103997 GGATCACGAACTTTGTGTATAGGAA 58.896 40.000 8.71 0.00 38.48 3.36
1501 1856 5.186215 TGGATCACGAACTTTGTGTATAGGA 59.814 40.000 8.71 0.00 38.48 2.94
1502 1857 5.291128 GTGGATCACGAACTTTGTGTATAGG 59.709 44.000 8.71 0.00 38.48 2.57
1503 1858 5.291128 GGTGGATCACGAACTTTGTGTATAG 59.709 44.000 8.71 0.00 38.48 1.31
1504 1859 5.172934 GGTGGATCACGAACTTTGTGTATA 58.827 41.667 8.71 0.00 38.48 1.47
1505 1860 4.000988 GGTGGATCACGAACTTTGTGTAT 58.999 43.478 8.71 2.54 38.48 2.29
1506 1861 3.181464 TGGTGGATCACGAACTTTGTGTA 60.181 43.478 8.71 0.00 38.48 2.90
1507 1862 2.218603 GGTGGATCACGAACTTTGTGT 58.781 47.619 8.71 0.00 38.48 3.72
1508 1863 2.032030 GTGGTGGATCACGAACTTTGTG 60.032 50.000 2.99 2.99 38.70 3.33
1509 1864 2.218603 GTGGTGGATCACGAACTTTGT 58.781 47.619 0.00 0.00 34.83 2.83
1510 1865 1.535462 GGTGGTGGATCACGAACTTTG 59.465 52.381 0.00 0.00 38.46 2.77
1511 1866 1.420138 AGGTGGTGGATCACGAACTTT 59.580 47.619 0.00 0.00 36.79 2.66
1512 1867 1.056660 AGGTGGTGGATCACGAACTT 58.943 50.000 0.00 0.00 36.79 2.66
1513 1868 1.825474 CTAGGTGGTGGATCACGAACT 59.175 52.381 5.96 5.96 42.41 3.01
1514 1869 1.134788 CCTAGGTGGTGGATCACGAAC 60.135 57.143 0.00 0.00 38.46 3.95
1515 1870 1.191535 CCTAGGTGGTGGATCACGAA 58.808 55.000 0.00 0.00 38.46 3.85
1516 1871 0.333652 TCCTAGGTGGTGGATCACGA 59.666 55.000 9.08 0.00 38.46 4.35
1517 1872 0.460311 GTCCTAGGTGGTGGATCACG 59.540 60.000 9.08 0.00 38.46 4.35
1518 1873 0.460311 CGTCCTAGGTGGTGGATCAC 59.540 60.000 9.08 0.00 37.07 3.06
1519 1874 1.327690 GCGTCCTAGGTGGTGGATCA 61.328 60.000 9.08 0.00 37.07 2.92
1520 1875 1.442148 GCGTCCTAGGTGGTGGATC 59.558 63.158 9.08 0.00 37.07 3.36
1521 1876 2.423898 CGCGTCCTAGGTGGTGGAT 61.424 63.158 9.08 0.00 37.07 3.41
1522 1877 3.066190 CGCGTCCTAGGTGGTGGA 61.066 66.667 9.08 0.00 37.07 4.02
1523 1878 3.352338 GACGCGTCCTAGGTGGTGG 62.352 68.421 28.61 0.00 37.07 4.61
1524 1879 2.181021 GACGCGTCCTAGGTGGTG 59.819 66.667 28.61 10.87 37.07 4.17
1525 1880 3.437795 CGACGCGTCCTAGGTGGT 61.438 66.667 31.84 2.60 37.07 4.16
1526 1881 3.437795 ACGACGCGTCCTAGGTGG 61.438 66.667 31.84 18.68 33.69 4.61
1527 1882 2.202440 CACGACGCGTCCTAGGTG 60.202 66.667 31.84 27.30 38.32 4.00
1528 1883 3.437795 CCACGACGCGTCCTAGGT 61.438 66.667 31.84 21.14 38.32 3.08
1529 1884 4.849329 GCCACGACGCGTCCTAGG 62.849 72.222 31.84 28.48 38.32 3.02
1538 1893 3.475774 GGTTACAGCGCCACGACG 61.476 66.667 2.29 0.00 0.00 5.12
1539 1894 1.296056 ATTGGTTACAGCGCCACGAC 61.296 55.000 2.29 0.00 34.02 4.34
1540 1895 1.004320 ATTGGTTACAGCGCCACGA 60.004 52.632 2.29 0.00 34.02 4.35
1541 1896 1.134487 CATTGGTTACAGCGCCACG 59.866 57.895 2.29 0.00 34.02 4.94
1542 1897 1.241315 ACCATTGGTTACAGCGCCAC 61.241 55.000 2.29 0.00 34.02 5.01
1543 1898 0.538516 AACCATTGGTTACAGCGCCA 60.539 50.000 19.53 0.00 44.94 5.69
1544 1899 0.170339 GAACCATTGGTTACAGCGCC 59.830 55.000 20.85 3.39 46.95 6.53
1545 1900 0.878416 TGAACCATTGGTTACAGCGC 59.122 50.000 20.85 0.00 46.95 5.92
1546 1901 2.487762 ACATGAACCATTGGTTACAGCG 59.512 45.455 20.85 15.77 46.95 5.18
1547 1902 3.367292 CCACATGAACCATTGGTTACAGC 60.367 47.826 20.85 9.29 46.95 4.40
1548 1903 3.367292 GCCACATGAACCATTGGTTACAG 60.367 47.826 20.85 14.74 46.95 2.74
1549 1904 2.560542 GCCACATGAACCATTGGTTACA 59.439 45.455 20.85 18.75 46.95 2.41
1550 1905 2.560542 TGCCACATGAACCATTGGTTAC 59.439 45.455 20.85 14.27 46.95 2.50
1551 1906 2.560542 GTGCCACATGAACCATTGGTTA 59.439 45.455 20.85 10.03 46.95 2.85
1552 1907 5.365822 GTGTGCCACATGAACCATTGGTT 62.366 47.826 20.95 20.95 40.44 3.67
1553 1908 0.968405 GTGCCACATGAACCATTGGT 59.032 50.000 1.37 1.37 37.65 3.67
1554 1909 0.967662 TGTGCCACATGAACCATTGG 59.032 50.000 0.00 0.00 0.00 3.16
1555 1910 1.337074 GGTGTGCCACATGAACCATTG 60.337 52.381 0.00 0.00 35.86 2.82
1556 1911 0.968405 GGTGTGCCACATGAACCATT 59.032 50.000 0.00 0.00 35.86 3.16
1557 1912 0.112995 AGGTGTGCCACATGAACCAT 59.887 50.000 0.00 0.00 35.86 3.55
1558 1913 1.536180 AGGTGTGCCACATGAACCA 59.464 52.632 0.00 0.00 35.86 3.67
1559 1914 4.500265 AGGTGTGCCACATGAACC 57.500 55.556 0.00 0.00 35.86 3.62
1563 1918 1.001048 CAGTTTCAGGTGTGCCACATG 60.001 52.381 0.00 12.04 45.77 3.21
1564 1919 1.321474 CAGTTTCAGGTGTGCCACAT 58.679 50.000 0.00 0.00 35.86 3.21
1565 1920 0.034574 ACAGTTTCAGGTGTGCCACA 60.035 50.000 0.00 0.00 35.86 4.17
1566 1921 1.602377 GTACAGTTTCAGGTGTGCCAC 59.398 52.381 0.00 0.00 37.19 5.01
1567 1922 1.476110 GGTACAGTTTCAGGTGTGCCA 60.476 52.381 4.90 0.00 45.81 4.92
1568 1923 1.202770 AGGTACAGTTTCAGGTGTGCC 60.203 52.381 1.74 1.74 46.60 5.01
1569 1924 1.873591 CAGGTACAGTTTCAGGTGTGC 59.126 52.381 0.00 0.00 0.00 4.57
1570 1925 3.131396 GACAGGTACAGTTTCAGGTGTG 58.869 50.000 0.00 0.00 0.00 3.82
1571 1926 2.769663 TGACAGGTACAGTTTCAGGTGT 59.230 45.455 0.00 0.00 0.00 4.16
1572 1927 3.469008 TGACAGGTACAGTTTCAGGTG 57.531 47.619 0.00 0.00 0.00 4.00
1573 1928 3.744530 GCTTGACAGGTACAGTTTCAGGT 60.745 47.826 0.00 0.00 0.00 4.00
1574 1929 2.808543 GCTTGACAGGTACAGTTTCAGG 59.191 50.000 0.00 0.00 0.00 3.86
1575 1930 2.808543 GGCTTGACAGGTACAGTTTCAG 59.191 50.000 0.00 0.00 0.00 3.02
1576 1931 2.438021 AGGCTTGACAGGTACAGTTTCA 59.562 45.455 0.00 0.00 0.00 2.69
1577 1932 3.067833 GAGGCTTGACAGGTACAGTTTC 58.932 50.000 0.00 0.00 0.00 2.78
1578 1933 2.224548 GGAGGCTTGACAGGTACAGTTT 60.225 50.000 0.00 0.00 0.00 2.66
1579 1934 1.348036 GGAGGCTTGACAGGTACAGTT 59.652 52.381 0.00 0.00 0.00 3.16
1580 1935 0.977395 GGAGGCTTGACAGGTACAGT 59.023 55.000 0.00 0.00 0.00 3.55
1581 1936 0.250513 GGGAGGCTTGACAGGTACAG 59.749 60.000 0.00 0.00 0.00 2.74
1582 1937 1.198759 GGGGAGGCTTGACAGGTACA 61.199 60.000 0.00 0.00 0.00 2.90
1583 1938 1.602771 GGGGAGGCTTGACAGGTAC 59.397 63.158 0.00 0.00 0.00 3.34
1584 1939 1.987855 CGGGGAGGCTTGACAGGTA 60.988 63.158 0.00 0.00 0.00 3.08
1585 1940 3.322466 CGGGGAGGCTTGACAGGT 61.322 66.667 0.00 0.00 0.00 4.00
1586 1941 3.322466 ACGGGGAGGCTTGACAGG 61.322 66.667 0.00 0.00 0.00 4.00
1587 1942 2.046892 CACGGGGAGGCTTGACAG 60.047 66.667 0.00 0.00 0.00 3.51
1588 1943 2.525629 TCACGGGGAGGCTTGACA 60.526 61.111 0.00 0.00 0.00 3.58
1589 1944 2.047179 GTCACGGGGAGGCTTGAC 60.047 66.667 0.88 0.88 32.15 3.18
1590 1945 1.899437 GATGTCACGGGGAGGCTTGA 61.899 60.000 0.00 0.00 0.00 3.02
1591 1946 1.450312 GATGTCACGGGGAGGCTTG 60.450 63.158 0.00 0.00 0.00 4.01
1592 1947 1.613630 AGATGTCACGGGGAGGCTT 60.614 57.895 0.00 0.00 0.00 4.35
1593 1948 2.039624 AGATGTCACGGGGAGGCT 59.960 61.111 0.00 0.00 0.00 4.58
1594 1949 2.501610 GAGATGTCACGGGGAGGC 59.498 66.667 0.00 0.00 0.00 4.70
1595 1950 2.786495 CGGAGATGTCACGGGGAGG 61.786 68.421 0.00 0.00 0.00 4.30
1596 1951 1.320344 TTCGGAGATGTCACGGGGAG 61.320 60.000 0.00 0.00 35.04 4.30
1597 1952 1.304630 TTCGGAGATGTCACGGGGA 60.305 57.895 0.00 0.00 35.04 4.81
1598 1953 1.141881 CTTCGGAGATGTCACGGGG 59.858 63.158 0.00 0.00 35.04 5.73
1599 1954 1.141881 CCTTCGGAGATGTCACGGG 59.858 63.158 0.00 0.00 35.04 5.28
1600 1955 0.179134 GACCTTCGGAGATGTCACGG 60.179 60.000 0.00 0.00 38.18 4.94
1601 1956 0.179134 GGACCTTCGGAGATGTCACG 60.179 60.000 0.00 0.00 39.46 4.35
1602 1957 1.134965 CAGGACCTTCGGAGATGTCAC 60.135 57.143 0.00 0.00 39.46 3.67
1603 1958 1.186200 CAGGACCTTCGGAGATGTCA 58.814 55.000 0.00 0.00 39.46 3.58
1604 1959 0.461961 CCAGGACCTTCGGAGATGTC 59.538 60.000 0.00 0.00 37.76 3.06
1605 1960 0.041238 TCCAGGACCTTCGGAGATGT 59.959 55.000 0.00 0.00 35.04 3.06
1606 1961 0.461961 GTCCAGGACCTTCGGAGATG 59.538 60.000 8.65 0.00 35.04 2.90
1607 1962 0.041238 TGTCCAGGACCTTCGGAGAT 59.959 55.000 17.59 0.00 35.04 2.75
1608 1963 0.898789 GTGTCCAGGACCTTCGGAGA 60.899 60.000 17.59 0.00 0.00 3.71
1609 1964 1.592223 GTGTCCAGGACCTTCGGAG 59.408 63.158 17.59 0.00 0.00 4.63
1610 1965 2.273179 CGTGTCCAGGACCTTCGGA 61.273 63.158 17.59 0.00 0.00 4.55
1611 1966 1.812686 TTCGTGTCCAGGACCTTCGG 61.813 60.000 17.59 1.94 0.00 4.30
1612 1967 0.032952 TTTCGTGTCCAGGACCTTCG 59.967 55.000 17.59 17.50 0.00 3.79
1613 1968 2.474410 ATTTCGTGTCCAGGACCTTC 57.526 50.000 17.59 6.78 0.00 3.46
1614 1969 2.552373 GGAATTTCGTGTCCAGGACCTT 60.552 50.000 17.59 1.22 33.79 3.50
1615 1970 1.003233 GGAATTTCGTGTCCAGGACCT 59.997 52.381 17.59 0.00 33.79 3.85
1616 1971 1.003233 AGGAATTTCGTGTCCAGGACC 59.997 52.381 17.59 7.51 36.28 4.46
1617 1972 2.474410 AGGAATTTCGTGTCCAGGAC 57.526 50.000 13.35 13.35 36.28 3.85
1618 1973 3.194968 GTCTAGGAATTTCGTGTCCAGGA 59.805 47.826 1.94 0.00 36.28 3.86
1619 1974 3.056107 TGTCTAGGAATTTCGTGTCCAGG 60.056 47.826 1.94 0.00 36.28 4.45
1620 1975 3.927142 GTGTCTAGGAATTTCGTGTCCAG 59.073 47.826 1.94 0.00 36.28 3.86
1621 1976 3.306502 GGTGTCTAGGAATTTCGTGTCCA 60.307 47.826 1.94 0.00 36.28 4.02
1622 1977 3.259902 GGTGTCTAGGAATTTCGTGTCC 58.740 50.000 1.94 0.00 0.00 4.02
1623 1978 3.056035 AGGGTGTCTAGGAATTTCGTGTC 60.056 47.826 1.94 0.00 0.00 3.67
1624 1979 2.904434 AGGGTGTCTAGGAATTTCGTGT 59.096 45.455 1.94 0.00 0.00 4.49
1625 1980 3.611766 AGGGTGTCTAGGAATTTCGTG 57.388 47.619 1.94 0.00 0.00 4.35
1626 1981 5.424252 TGAATAGGGTGTCTAGGAATTTCGT 59.576 40.000 0.00 0.00 0.00 3.85
1627 1982 5.914033 TGAATAGGGTGTCTAGGAATTTCG 58.086 41.667 0.00 0.00 0.00 3.46
1628 1983 7.509546 TCATGAATAGGGTGTCTAGGAATTTC 58.490 38.462 0.00 0.00 0.00 2.17
1629 1984 7.451731 TCATGAATAGGGTGTCTAGGAATTT 57.548 36.000 0.00 0.00 0.00 1.82
1630 1985 7.256835 GGATCATGAATAGGGTGTCTAGGAATT 60.257 40.741 0.00 0.00 0.00 2.17
1631 1986 6.214412 GGATCATGAATAGGGTGTCTAGGAAT 59.786 42.308 0.00 0.00 0.00 3.01
1632 1987 5.544176 GGATCATGAATAGGGTGTCTAGGAA 59.456 44.000 0.00 0.00 0.00 3.36
1633 1988 5.087323 GGATCATGAATAGGGTGTCTAGGA 58.913 45.833 0.00 0.00 0.00 2.94
1634 1989 4.840680 TGGATCATGAATAGGGTGTCTAGG 59.159 45.833 0.00 0.00 0.00 3.02
1635 1990 5.279708 GGTGGATCATGAATAGGGTGTCTAG 60.280 48.000 0.00 0.00 0.00 2.43
1636 1991 4.593206 GGTGGATCATGAATAGGGTGTCTA 59.407 45.833 0.00 0.00 0.00 2.59
1637 1992 3.392616 GGTGGATCATGAATAGGGTGTCT 59.607 47.826 0.00 0.00 0.00 3.41
1638 1993 3.136443 TGGTGGATCATGAATAGGGTGTC 59.864 47.826 0.00 0.00 0.00 3.67
1639 1994 3.117888 GTGGTGGATCATGAATAGGGTGT 60.118 47.826 0.00 0.00 0.00 4.16
1640 1995 3.480470 GTGGTGGATCATGAATAGGGTG 58.520 50.000 0.00 0.00 0.00 4.61
1641 1996 2.443255 GGTGGTGGATCATGAATAGGGT 59.557 50.000 0.00 0.00 0.00 4.34
1642 1997 2.713167 AGGTGGTGGATCATGAATAGGG 59.287 50.000 0.00 0.00 0.00 3.53
1643 1998 4.019860 CCTAGGTGGTGGATCATGAATAGG 60.020 50.000 0.00 0.00 0.00 2.57
1644 1999 4.840680 TCCTAGGTGGTGGATCATGAATAG 59.159 45.833 9.08 0.00 37.07 1.73
1645 2000 4.593206 GTCCTAGGTGGTGGATCATGAATA 59.407 45.833 9.08 0.00 37.07 1.75
1646 2001 3.392616 GTCCTAGGTGGTGGATCATGAAT 59.607 47.826 9.08 0.00 37.07 2.57
1647 2002 2.771943 GTCCTAGGTGGTGGATCATGAA 59.228 50.000 9.08 0.00 37.07 2.57
1648 2003 2.398588 GTCCTAGGTGGTGGATCATGA 58.601 52.381 9.08 0.00 37.07 3.07
1649 2004 1.069204 CGTCCTAGGTGGTGGATCATG 59.931 57.143 9.08 0.00 37.07 3.07
1650 2005 1.414158 CGTCCTAGGTGGTGGATCAT 58.586 55.000 9.08 0.00 37.07 2.45
1651 2006 1.327690 GCGTCCTAGGTGGTGGATCA 61.328 60.000 9.08 0.00 37.07 2.92
1652 2007 1.327690 TGCGTCCTAGGTGGTGGATC 61.328 60.000 9.08 0.00 37.07 3.36
1653 2008 0.691078 ATGCGTCCTAGGTGGTGGAT 60.691 55.000 9.08 1.31 37.07 3.41
1654 2009 1.305802 ATGCGTCCTAGGTGGTGGA 60.306 57.895 9.08 0.00 37.07 4.02
1655 2010 1.144057 GATGCGTCCTAGGTGGTGG 59.856 63.158 9.08 0.00 37.07 4.61
1656 2011 1.226974 CGATGCGTCCTAGGTGGTG 60.227 63.158 9.08 0.00 37.07 4.17
1657 2012 1.681327 ACGATGCGTCCTAGGTGGT 60.681 57.895 9.08 0.00 33.69 4.16
1658 2013 1.226974 CACGATGCGTCCTAGGTGG 60.227 63.158 9.08 2.96 38.32 4.61
1659 2014 1.226974 CCACGATGCGTCCTAGGTG 60.227 63.158 9.08 3.95 38.32 4.00
1660 2015 3.077519 GCCACGATGCGTCCTAGGT 62.078 63.158 9.08 0.00 38.32 3.08
1661 2016 2.279517 GCCACGATGCGTCCTAGG 60.280 66.667 0.82 0.82 38.32 3.02
1671 2026 0.392461 ATTGGTTACAGCGCCACGAT 60.392 50.000 2.29 0.00 34.02 3.73
1672 2027 1.004320 ATTGGTTACAGCGCCACGA 60.004 52.632 2.29 0.00 34.02 4.35
1673 2028 1.134487 CATTGGTTACAGCGCCACG 59.866 57.895 2.29 0.00 34.02 4.94
1674 2029 1.241315 ACCATTGGTTACAGCGCCAC 61.241 55.000 2.29 0.00 34.02 5.01
1675 2030 0.538516 AACCATTGGTTACAGCGCCA 60.539 50.000 19.53 0.00 44.94 5.69
1676 2031 0.601057 AAACCATTGGTTACAGCGCC 59.399 50.000 21.10 0.00 46.20 6.53
1677 2032 1.539827 AGAAACCATTGGTTACAGCGC 59.460 47.619 21.10 0.00 46.20 5.92
1678 2033 2.552315 ACAGAAACCATTGGTTACAGCG 59.448 45.455 21.10 10.72 46.20 5.18
1679 2034 3.305335 CCACAGAAACCATTGGTTACAGC 60.305 47.826 21.10 11.06 46.20 4.40
1680 2035 3.305335 GCCACAGAAACCATTGGTTACAG 60.305 47.826 21.10 15.01 46.20 2.74
1681 2036 2.625790 GCCACAGAAACCATTGGTTACA 59.374 45.455 21.10 0.00 46.20 2.41
1682 2037 2.625790 TGCCACAGAAACCATTGGTTAC 59.374 45.455 21.10 6.27 46.20 2.50
1683 2038 2.625790 GTGCCACAGAAACCATTGGTTA 59.374 45.455 21.10 0.40 46.20 2.85
1684 2039 5.303016 GTGTGCCACAGAAACCATTGGTT 62.303 47.826 15.48 15.48 39.90 3.67
1685 2040 1.039856 GTGCCACAGAAACCATTGGT 58.960 50.000 1.37 1.37 37.65 3.67
1686 2041 1.039068 TGTGCCACAGAAACCATTGG 58.961 50.000 0.00 0.00 0.00 3.16
1687 2042 1.269726 GGTGTGCCACAGAAACCATTG 60.270 52.381 0.00 0.00 35.86 2.82
1688 2043 1.039856 GGTGTGCCACAGAAACCATT 58.960 50.000 0.00 0.00 35.86 3.16
1689 2044 0.185901 AGGTGTGCCACAGAAACCAT 59.814 50.000 0.00 0.00 35.86 3.55
1690 2045 0.751277 CAGGTGTGCCACAGAAACCA 60.751 55.000 0.00 0.00 35.86 3.67
1691 2046 0.465460 TCAGGTGTGCCACAGAAACC 60.465 55.000 0.00 0.00 35.86 3.27
1692 2047 1.065551 GTTCAGGTGTGCCACAGAAAC 59.934 52.381 0.00 0.00 35.86 2.78
1693 2048 1.388547 GTTCAGGTGTGCCACAGAAA 58.611 50.000 0.00 0.00 35.86 2.52
1694 2049 0.465460 GGTTCAGGTGTGCCACAGAA 60.465 55.000 0.00 0.00 35.86 3.02
1695 2050 1.148273 GGTTCAGGTGTGCCACAGA 59.852 57.895 0.00 0.00 35.86 3.41
1696 2051 1.149174 AGGTTCAGGTGTGCCACAG 59.851 57.895 0.00 0.00 35.86 3.66
1697 2052 1.152984 CAGGTTCAGGTGTGCCACA 60.153 57.895 0.00 0.00 35.86 4.17
1698 2053 2.555547 GCAGGTTCAGGTGTGCCAC 61.556 63.158 0.00 0.00 37.19 5.01
1699 2054 2.203337 GCAGGTTCAGGTGTGCCA 60.203 61.111 0.00 0.00 37.19 4.92
1700 2055 2.203337 TGCAGGTTCAGGTGTGCC 60.203 61.111 0.00 0.00 34.91 5.01
1701 2056 2.555547 GGTGCAGGTTCAGGTGTGC 61.556 63.158 0.00 0.00 36.42 4.57
1702 2057 1.149174 AGGTGCAGGTTCAGGTGTG 59.851 57.895 0.00 0.00 0.00 3.82
1703 2058 1.149174 CAGGTGCAGGTTCAGGTGT 59.851 57.895 0.00 0.00 0.00 4.16
1704 2059 0.396435 TACAGGTGCAGGTTCAGGTG 59.604 55.000 0.00 0.00 0.00 4.00
1705 2060 0.396811 GTACAGGTGCAGGTTCAGGT 59.603 55.000 0.00 0.00 0.00 4.00
1706 2061 0.396435 TGTACAGGTGCAGGTTCAGG 59.604 55.000 0.00 0.00 0.00 3.86
1707 2062 2.079158 CATGTACAGGTGCAGGTTCAG 58.921 52.381 0.33 0.00 0.00 3.02
1708 2063 1.419762 ACATGTACAGGTGCAGGTTCA 59.580 47.619 13.18 0.00 36.89 3.18
1709 2064 2.185004 ACATGTACAGGTGCAGGTTC 57.815 50.000 13.18 0.00 36.89 3.62
1710 2065 2.290071 GGTACATGTACAGGTGCAGGTT 60.290 50.000 31.52 0.80 40.40 3.50
1711 2066 1.278127 GGTACATGTACAGGTGCAGGT 59.722 52.381 31.52 12.07 42.36 4.00
1712 2067 1.406887 GGGTACATGTACAGGTGCAGG 60.407 57.143 31.52 0.73 37.78 4.85
1713 2068 1.739035 CGGGTACATGTACAGGTGCAG 60.739 57.143 31.52 16.96 37.78 4.41
1714 2069 0.248012 CGGGTACATGTACAGGTGCA 59.752 55.000 31.52 5.11 37.78 4.57
1715 2070 0.248289 ACGGGTACATGTACAGGTGC 59.752 55.000 31.52 20.65 37.78 5.01
1716 2071 1.546923 TGACGGGTACATGTACAGGTG 59.453 52.381 31.52 20.96 37.78 4.00
1717 2072 1.927487 TGACGGGTACATGTACAGGT 58.073 50.000 31.52 27.11 37.78 4.00
1718 2073 2.888594 CTTGACGGGTACATGTACAGG 58.111 52.381 31.52 24.63 37.78 4.00
1719 2074 2.268298 GCTTGACGGGTACATGTACAG 58.732 52.381 31.52 26.18 37.78 2.74
1720 2075 1.066716 GGCTTGACGGGTACATGTACA 60.067 52.381 31.52 12.77 37.78 2.90
1721 2076 1.206371 AGGCTTGACGGGTACATGTAC 59.794 52.381 25.00 25.00 35.40 2.90
1722 2077 1.479323 GAGGCTTGACGGGTACATGTA 59.521 52.381 0.08 0.08 0.00 2.29
1723 2078 0.249398 GAGGCTTGACGGGTACATGT 59.751 55.000 2.69 2.69 0.00 3.21
1724 2079 0.462047 GGAGGCTTGACGGGTACATG 60.462 60.000 0.00 0.00 0.00 3.21
1725 2080 0.617820 AGGAGGCTTGACGGGTACAT 60.618 55.000 0.00 0.00 0.00 2.29
1726 2081 0.040058 TAGGAGGCTTGACGGGTACA 59.960 55.000 0.00 0.00 0.00 2.90
1727 2082 0.745468 CTAGGAGGCTTGACGGGTAC 59.255 60.000 0.00 0.00 0.00 3.34
1728 2083 0.396695 CCTAGGAGGCTTGACGGGTA 60.397 60.000 1.05 0.00 0.00 3.69
1729 2084 1.686110 CCTAGGAGGCTTGACGGGT 60.686 63.158 1.05 0.00 0.00 5.28
1730 2085 2.435693 CCCTAGGAGGCTTGACGGG 61.436 68.421 11.48 0.00 32.73 5.28
1731 2086 3.221222 CCCTAGGAGGCTTGACGG 58.779 66.667 11.48 0.00 32.73 4.79
1747 2102 0.476771 TAGGAAATTCGGGGATGGCC 59.523 55.000 0.00 0.00 0.00 5.36
1761 2116 0.988832 AACTTCGGGGTGCATAGGAA 59.011 50.000 0.00 0.00 0.00 3.36
1771 2126 3.899052 TTGTGTATAGGAACTTCGGGG 57.101 47.619 0.00 0.00 41.75 5.73
1822 2177 2.147958 GAACCATTGGTTACAGCGTCA 58.852 47.619 20.85 0.00 46.95 4.35
1824 2179 2.264005 TGAACCATTGGTTACAGCGT 57.736 45.000 20.85 0.00 46.95 5.07
1844 2199 2.949177 ATAGTTTCAGGTGTGCCACA 57.051 45.000 0.00 0.00 35.86 4.17
1862 2217 1.338136 CGGGGAGGCTTGACAGGTAT 61.338 60.000 0.00 0.00 0.00 2.73
1935 2290 0.394762 ACGATGCGTCCTAGGTGGTA 60.395 55.000 9.08 1.76 33.69 3.25
1954 2309 0.538516 AACCATTGGTTACAGCGCCA 60.539 50.000 19.53 0.00 44.94 5.69
2022 2377 2.042464 CATCTTCGGAGATCCCCTTGA 58.958 52.381 2.21 0.00 40.67 3.02
2025 2380 2.182516 AACATCTTCGGAGATCCCCT 57.817 50.000 2.21 0.00 40.67 4.79
2088 2443 1.363807 CACTGTGCAGACTGGTCGA 59.636 57.895 4.26 0.00 34.09 4.20
2132 2487 0.613853 CTACCTGGGGTGAACGGAGA 60.614 60.000 0.00 0.00 36.19 3.71
2186 2554 5.516996 CAATCAAAGAAGATGCATGCGTAT 58.483 37.500 13.55 6.85 0.00 3.06
2187 2555 4.731483 GCAATCAAAGAAGATGCATGCGTA 60.731 41.667 13.55 0.00 0.00 4.42
2188 2556 3.766151 CAATCAAAGAAGATGCATGCGT 58.234 40.909 13.43 13.43 0.00 5.24
2189 2557 2.534349 GCAATCAAAGAAGATGCATGCG 59.466 45.455 14.09 0.00 0.00 4.73
2193 2565 2.823747 AGCTGCAATCAAAGAAGATGCA 59.176 40.909 1.02 0.00 33.87 3.96
2239 2611 2.037144 GGCTTGGATGATCTGGCAAAT 58.963 47.619 0.00 0.00 0.00 2.32
2278 2650 0.704076 CCCCTGGGAAGTGGATGAAA 59.296 55.000 16.20 0.00 37.50 2.69
2293 2676 3.588569 CAAGCTATAAGGTAGACCCCCT 58.411 50.000 0.00 0.00 36.42 4.79
2402 3148 4.586001 AGTGGACACAAGATGCAATTTCTT 59.414 37.500 5.14 0.00 33.75 2.52
2463 3209 1.962807 TGGACCAAAACAATGCTCTGG 59.037 47.619 0.00 0.00 0.00 3.86
2470 3216 1.545582 CTCGGCATGGACCAAAACAAT 59.454 47.619 0.00 0.00 0.00 2.71
2520 4121 0.393537 ACCTGCTCTATTGCCAGTGC 60.394 55.000 0.00 0.00 35.97 4.40
2546 4147 1.475751 GCTAGCTAAAGGCAGCATCCA 60.476 52.381 7.70 0.00 44.35 3.41
2587 4206 3.469863 GAGTTGTGACCCCGCCACA 62.470 63.158 0.00 0.00 42.16 4.17
2588 4207 2.668550 GAGTTGTGACCCCGCCAC 60.669 66.667 0.00 0.00 35.23 5.01
2589 4208 2.674563 CTTGAGTTGTGACCCCGCCA 62.675 60.000 0.00 0.00 0.00 5.69
2590 4209 1.966451 CTTGAGTTGTGACCCCGCC 60.966 63.158 0.00 0.00 0.00 6.13
2591 4210 1.227853 ACTTGAGTTGTGACCCCGC 60.228 57.895 0.00 0.00 0.00 6.13
2594 4213 1.308998 CACCACTTGAGTTGTGACCC 58.691 55.000 9.12 0.00 42.31 4.46
2595 4214 2.038387 ACACCACTTGAGTTGTGACC 57.962 50.000 18.72 0.00 42.31 4.02
2596 4215 3.438781 TGAAACACCACTTGAGTTGTGAC 59.561 43.478 18.72 11.26 42.31 3.67
2597 4216 3.680490 TGAAACACCACTTGAGTTGTGA 58.320 40.909 18.72 0.00 42.31 3.58
2598 4217 4.165779 GTTGAAACACCACTTGAGTTGTG 58.834 43.478 12.29 12.29 44.40 3.33
2599 4218 3.119990 CGTTGAAACACCACTTGAGTTGT 60.120 43.478 0.00 0.00 0.00 3.32
2600 4219 3.425404 CGTTGAAACACCACTTGAGTTG 58.575 45.455 0.00 0.00 0.00 3.16
2601 4220 2.422127 CCGTTGAAACACCACTTGAGTT 59.578 45.455 0.00 0.00 0.00 3.01
2602 4221 2.014128 CCGTTGAAACACCACTTGAGT 58.986 47.619 0.00 0.00 0.00 3.41
2604 4223 2.404923 TCCGTTGAAACACCACTTGA 57.595 45.000 0.00 0.00 0.00 3.02
2796 4419 1.364626 GCTTGCGACCAGATCACAGG 61.365 60.000 0.00 0.00 0.00 4.00
2827 4477 1.625818 GTTGAGTCCACCTGAGGATGT 59.374 52.381 4.99 0.00 40.42 3.06
2852 4502 2.750814 TGTATCTCCTCATGTGGCTCA 58.249 47.619 9.02 0.00 0.00 4.26
2932 4582 4.492494 TGTGTACCGTATCTCCTCTACA 57.508 45.455 0.00 0.00 0.00 2.74
3026 4676 7.552687 ACATAACCGAATGAGATTTAGCAAGAA 59.447 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.