Multiple sequence alignment - TraesCS7D01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G353600 chr7D 100.000 4666 0 0 1 4666 457151033 457146368 0.000000e+00 8617.0
1 TraesCS7D01G353600 chr7D 91.692 325 20 7 4345 4666 161920826 161921146 1.190000e-120 444.0
2 TraesCS7D01G353600 chr7B 97.271 2125 42 7 1 2112 479239204 479237083 0.000000e+00 3589.0
3 TraesCS7D01G353600 chr7B 95.358 1034 24 4 2106 3115 479234656 479233623 0.000000e+00 1622.0
4 TraesCS7D01G353600 chr7B 92.006 713 36 11 3383 4094 479233166 479232474 0.000000e+00 981.0
5 TraesCS7D01G353600 chr7B 92.211 475 17 9 3149 3619 479233626 479233168 0.000000e+00 654.0
6 TraesCS7D01G353600 chr7B 87.838 222 24 3 4124 4344 334315936 334315717 1.670000e-64 257.0
7 TraesCS7D01G353600 chr6A 90.035 1144 105 5 945 2085 396291911 396290774 0.000000e+00 1472.0
8 TraesCS7D01G353600 chr6A 86.771 703 53 19 2237 2922 396290779 396290100 0.000000e+00 747.0
9 TraesCS7D01G353600 chr6A 80.208 192 16 14 3564 3745 396289903 396289724 1.760000e-24 124.0
10 TraesCS7D01G353600 chr6B 89.373 1148 105 8 945 2085 437471910 437470773 0.000000e+00 1428.0
11 TraesCS7D01G353600 chr6B 84.648 697 54 19 2237 2922 437470778 437470124 0.000000e+00 645.0
12 TraesCS7D01G353600 chr6B 92.901 324 15 6 4345 4666 142725953 142726270 9.140000e-127 464.0
13 TraesCS7D01G353600 chr6B 96.729 214 7 0 4124 4337 601040503 601040290 1.600000e-94 357.0
14 TraesCS7D01G353600 chr6D 89.326 1143 110 5 945 2085 275667790 275666658 0.000000e+00 1424.0
15 TraesCS7D01G353600 chr6D 88.075 696 51 17 2237 2922 275666663 275665990 0.000000e+00 797.0
16 TraesCS7D01G353600 chr6D 93.949 314 14 5 4345 4656 37425105 37425415 1.970000e-128 470.0
17 TraesCS7D01G353600 chr6D 92.331 326 20 5 4345 4666 382581088 382581412 4.250000e-125 459.0
18 TraesCS7D01G353600 chr6D 81.250 192 19 10 3562 3745 275665798 275665616 6.300000e-29 139.0
19 TraesCS7D01G353600 chr7A 98.211 615 9 2 1473 2085 543341168 543341782 0.000000e+00 1074.0
20 TraesCS7D01G353600 chr7A 96.007 576 18 4 2237 2807 543341777 543342352 0.000000e+00 931.0
21 TraesCS7D01G353600 chr7A 92.105 646 46 4 833 1474 543340400 543341044 0.000000e+00 905.0
22 TraesCS7D01G353600 chr7A 90.698 430 17 9 3389 3815 543342946 543343355 6.820000e-153 551.0
23 TraesCS7D01G353600 chr7A 84.704 523 36 21 92 584 543339785 543340293 2.520000e-132 483.0
24 TraesCS7D01G353600 chr7A 88.623 334 16 9 3025 3340 543342498 543342827 2.040000e-103 387.0
25 TraesCS7D01G353600 chr7A 89.960 249 17 2 3844 4092 543343355 543343595 9.750000e-82 315.0
26 TraesCS7D01G353600 chr7A 95.031 161 8 0 2079 2239 130229701 130229541 2.150000e-63 254.0
27 TraesCS7D01G353600 chr7A 100.000 37 0 0 3339 3375 543342913 543342949 8.380000e-08 69.4
28 TraesCS7D01G353600 chr3D 94.801 327 9 6 4344 4666 574975990 574975668 1.940000e-138 503.0
29 TraesCS7D01G353600 chr3D 94.444 324 14 4 4345 4666 384565873 384565552 3.240000e-136 496.0
30 TraesCS7D01G353600 chr1D 94.136 324 10 7 4345 4663 340321071 340321390 7.020000e-133 484.0
31 TraesCS7D01G353600 chr5D 93.558 326 12 7 4345 4666 45131644 45131324 1.170000e-130 477.0
32 TraesCS7D01G353600 chr3B 92.424 330 15 4 4343 4666 19155669 19155344 3.290000e-126 462.0
33 TraesCS7D01G353600 chr3B 94.872 156 6 2 2085 2239 420877130 420877284 4.660000e-60 243.0
34 TraesCS7D01G353600 chr3B 91.765 170 13 1 2085 2253 506736220 506736051 7.810000e-58 235.0
35 TraesCS7D01G353600 chr2A 95.964 223 9 0 4122 4344 159132000 159131778 3.430000e-96 363.0
36 TraesCS7D01G353600 chr2A 94.872 156 7 1 2084 2239 86446012 86445858 4.660000e-60 243.0
37 TraesCS7D01G353600 chr2A 93.252 163 8 2 2084 2246 107386658 107386499 2.170000e-58 237.0
38 TraesCS7D01G353600 chr3A 94.872 156 6 2 2085 2239 434850069 434850223 4.660000e-60 243.0
39 TraesCS7D01G353600 chr2D 94.340 159 8 1 2081 2239 29624349 29624506 4.660000e-60 243.0
40 TraesCS7D01G353600 chr2D 94.304 158 9 0 2085 2242 556055658 556055815 4.660000e-60 243.0
41 TraesCS7D01G353600 chr4D 86.559 186 24 1 4160 4344 437949393 437949208 2.200000e-48 204.0
42 TraesCS7D01G353600 chr1A 80.894 246 34 9 1690 1927 483617922 483618162 1.030000e-41 182.0
43 TraesCS7D01G353600 chr5B 82.716 81 7 7 3882 3961 447267907 447267981 1.080000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G353600 chr7D 457146368 457151033 4665 True 8617.000000 8617 100.000000 1 4666 1 chr7D.!!$R1 4665
1 TraesCS7D01G353600 chr7B 479232474 479239204 6730 True 1711.500000 3589 94.211500 1 4094 4 chr7B.!!$R2 4093
2 TraesCS7D01G353600 chr6A 396289724 396291911 2187 True 781.000000 1472 85.671333 945 3745 3 chr6A.!!$R1 2800
3 TraesCS7D01G353600 chr6B 437470124 437471910 1786 True 1036.500000 1428 87.010500 945 2922 2 chr6B.!!$R2 1977
4 TraesCS7D01G353600 chr6D 275665616 275667790 2174 True 786.666667 1424 86.217000 945 3745 3 chr6D.!!$R1 2800
5 TraesCS7D01G353600 chr7A 543339785 543343595 3810 False 589.425000 1074 92.538500 92 4092 8 chr7A.!!$F1 4000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 702 1.170919 CCATATGGGAGTGCTGCTGC 61.171 60.000 14.52 8.89 40.01 5.25 F
1445 1525 1.003545 CAGTGACAAGACTGGCAAACG 60.004 52.381 0.00 0.00 44.22 3.60 F
1687 1893 1.693606 CCCTTGGGCTTGTTTGATGTT 59.306 47.619 0.00 0.00 0.00 2.71 F
3121 5842 0.107410 TTGGTCAGACTTTGCACCGT 60.107 50.000 0.00 0.00 32.74 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 1893 0.540133 ACACCTGCATTGCATCCACA 60.540 50.000 12.53 0.00 38.13 4.17 R
2736 5412 1.464687 GCATTGACTACAGCAAGCACG 60.465 52.381 0.00 0.00 0.00 5.34 R
3573 6638 0.538584 CTGATACTGTGGCTGGCTGA 59.461 55.000 2.00 0.00 0.00 4.26 R
4183 7260 0.037232 GAGAGGTTAGCACGTGCCTT 60.037 55.000 35.51 21.57 43.38 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 92 4.097418 CCTCTTCTCCTTGGAAACCTCTA 58.903 47.826 0.00 0.00 0.00 2.43
165 171 3.905591 TGAGCATCACCATATCCATCTCA 59.094 43.478 0.00 0.00 42.56 3.27
333 352 2.098934 TGATTTGTTTCAAGCACTGCGT 59.901 40.909 0.00 0.00 0.00 5.24
526 564 1.997874 GGAGGGGTGTGATCCTGCT 60.998 63.158 0.00 0.00 38.30 4.24
633 702 1.170919 CCATATGGGAGTGCTGCTGC 61.171 60.000 14.52 8.89 40.01 5.25
639 708 1.294780 GGAGTGCTGCTGCTACTGT 59.705 57.895 19.65 3.57 40.48 3.55
732 801 7.010339 AGGATAATTTACATAGAGGAGTGCC 57.990 40.000 0.00 0.00 0.00 5.01
876 947 5.471456 ACAATCTGCTGGACAACTAAGAAAG 59.529 40.000 0.00 0.00 0.00 2.62
885 956 8.568794 GCTGGACAACTAAGAAAGTTTTTAGAT 58.431 33.333 17.22 8.42 46.61 1.98
972 1046 3.737774 TCTTGCTCTAATCATCGAATGCG 59.262 43.478 0.00 0.00 39.35 4.73
973 1047 1.794701 TGCTCTAATCATCGAATGCGC 59.205 47.619 0.00 0.00 37.46 6.09
975 1049 2.159867 GCTCTAATCATCGAATGCGCAG 60.160 50.000 18.32 1.66 37.46 5.18
1265 1340 2.682269 GCTGAGGAAAAGAGATGTCCCC 60.682 54.545 0.00 0.00 31.25 4.81
1419 1494 1.335182 TGTTTGGGCAACGTGTGTATG 59.665 47.619 0.00 0.00 38.36 2.39
1445 1525 1.003545 CAGTGACAAGACTGGCAAACG 60.004 52.381 0.00 0.00 44.22 3.60
1526 1732 5.449553 AGTGTCATTCTTTTCCACCTTCTT 58.550 37.500 0.00 0.00 0.00 2.52
1687 1893 1.693606 CCCTTGGGCTTGTTTGATGTT 59.306 47.619 0.00 0.00 0.00 2.71
1912 2118 5.337894 CCTTGATCGGGCTATCATGTTCTAT 60.338 44.000 4.34 0.00 35.84 1.98
2252 4895 4.437239 GAGGGAGTACATCACATGACAAG 58.563 47.826 0.00 0.00 31.63 3.16
2673 5348 3.131223 AGTGGTATGTCTTCTGGATGTCG 59.869 47.826 0.00 0.00 0.00 4.35
2736 5412 9.793252 ATTAACAGTTAATGATGAATGCAAGAC 57.207 29.630 16.42 0.00 34.68 3.01
2860 5544 5.897377 ATTCAATTGGCCTACACAACTAC 57.103 39.130 3.32 0.00 0.00 2.73
2867 5551 3.508793 TGGCCTACACAACTACTGTAGTC 59.491 47.826 19.93 5.83 39.62 2.59
2973 5664 8.190784 CCTATAAATTTCGTCTGAAGCCAAAAT 58.809 33.333 0.00 0.00 35.06 1.82
2979 5670 3.745975 TCGTCTGAAGCCAAAATGTACAG 59.254 43.478 0.33 0.00 0.00 2.74
3071 5792 7.110155 ACTGAGTATTAATTTGGTACTGTGGG 58.890 38.462 0.00 0.00 0.00 4.61
3074 5795 7.092802 TGAGTATTAATTTGGTACTGTGGGCTA 60.093 37.037 0.00 0.00 0.00 3.93
3121 5842 0.107410 TTGGTCAGACTTTGCACCGT 60.107 50.000 0.00 0.00 32.74 4.83
3133 5854 0.179234 TGCACCGTTTGACTTCAGGA 59.821 50.000 0.00 0.00 0.00 3.86
3136 5857 2.287009 GCACCGTTTGACTTCAGGAAAG 60.287 50.000 0.00 0.00 41.08 2.62
3140 5861 4.703093 ACCGTTTGACTTCAGGAAAGAAAA 59.297 37.500 0.00 0.00 38.44 2.29
3141 5862 5.184287 ACCGTTTGACTTCAGGAAAGAAAAA 59.816 36.000 0.00 0.00 38.44 1.94
3153 5875 7.410174 TCAGGAAAGAAAAATATAGGCCTTCA 58.590 34.615 12.58 0.00 0.00 3.02
3154 5876 7.893302 TCAGGAAAGAAAAATATAGGCCTTCAA 59.107 33.333 12.58 0.00 0.00 2.69
3381 6219 5.473504 CCCACTTAATTAGCAGAACACAGTT 59.526 40.000 0.00 0.00 0.00 3.16
3402 6466 7.719633 ACAGTTGAAGAAAGTAAGCATCCTAAA 59.280 33.333 0.00 0.00 0.00 1.85
3483 6547 6.405065 GCATGGTTGTCAATACTGAACATGAT 60.405 38.462 0.00 0.00 35.68 2.45
3530 6595 3.488047 GCTTGCACGCATGATTGATTACT 60.488 43.478 10.77 0.00 0.00 2.24
3573 6638 6.279513 TGAAAACGAATTATCCTTGGCAAT 57.720 33.333 0.00 0.00 0.00 3.56
3841 6918 3.556543 AAAGCAACCACCGCATGCG 62.557 57.895 32.60 32.60 44.60 4.73
3879 6956 3.542712 AGTGTTATCAAGTTGCTTGCG 57.457 42.857 0.00 0.00 40.84 4.85
3895 6972 4.332543 TGCTTGCGGTTTGATTATCACTAG 59.667 41.667 0.00 0.00 0.00 2.57
3900 6977 5.584649 TGCGGTTTGATTATCACTAGAAAGG 59.415 40.000 0.00 0.00 0.00 3.11
3901 6978 5.585047 GCGGTTTGATTATCACTAGAAAGGT 59.415 40.000 0.00 0.00 0.00 3.50
3951 7028 3.011821 ACTGGGGACTAGATTGTGAGAGA 59.988 47.826 0.00 0.00 0.00 3.10
3998 7075 0.391661 AAGATGCACACCTACAGCGG 60.392 55.000 0.00 0.00 0.00 5.52
4001 7078 0.462581 ATGCACACCTACAGCGGATG 60.463 55.000 0.00 0.00 0.00 3.51
4021 7098 1.132643 GCTATACCCGATCGCTACTGG 59.867 57.143 10.32 7.75 0.00 4.00
4033 7110 4.345859 TCGCTACTGGGAGAAAGAAAAA 57.654 40.909 0.00 0.00 0.00 1.94
4086 7163 2.573462 AGAGCAACTCCAATAGCTTCCA 59.427 45.455 0.00 0.00 37.48 3.53
4094 7171 4.348168 ACTCCAATAGCTTCCATATCCGTT 59.652 41.667 0.00 0.00 0.00 4.44
4095 7172 5.163195 ACTCCAATAGCTTCCATATCCGTTT 60.163 40.000 0.00 0.00 0.00 3.60
4096 7173 5.690865 TCCAATAGCTTCCATATCCGTTTT 58.309 37.500 0.00 0.00 0.00 2.43
4097 7174 6.833041 TCCAATAGCTTCCATATCCGTTTTA 58.167 36.000 0.00 0.00 0.00 1.52
4098 7175 6.708949 TCCAATAGCTTCCATATCCGTTTTAC 59.291 38.462 0.00 0.00 0.00 2.01
4099 7176 6.347402 CCAATAGCTTCCATATCCGTTTTACG 60.347 42.308 0.00 0.00 42.11 3.18
4111 7188 2.976729 CGTTTTACGGGAAGTTGTGTG 58.023 47.619 0.00 0.00 38.08 3.82
4112 7189 2.608546 CGTTTTACGGGAAGTTGTGTGA 59.391 45.455 0.00 0.00 38.08 3.58
4113 7190 3.063725 CGTTTTACGGGAAGTTGTGTGAA 59.936 43.478 0.00 0.00 38.08 3.18
4114 7191 4.594136 GTTTTACGGGAAGTTGTGTGAAG 58.406 43.478 0.00 0.00 0.00 3.02
4115 7192 3.823281 TTACGGGAAGTTGTGTGAAGA 57.177 42.857 0.00 0.00 0.00 2.87
4116 7193 2.702592 ACGGGAAGTTGTGTGAAGAA 57.297 45.000 0.00 0.00 0.00 2.52
4117 7194 2.993937 ACGGGAAGTTGTGTGAAGAAA 58.006 42.857 0.00 0.00 0.00 2.52
4118 7195 3.349022 ACGGGAAGTTGTGTGAAGAAAA 58.651 40.909 0.00 0.00 0.00 2.29
4119 7196 3.128068 ACGGGAAGTTGTGTGAAGAAAAC 59.872 43.478 0.00 0.00 0.00 2.43
4120 7197 3.488553 CGGGAAGTTGTGTGAAGAAAACC 60.489 47.826 0.00 0.00 0.00 3.27
4121 7198 3.699538 GGGAAGTTGTGTGAAGAAAACCT 59.300 43.478 0.00 0.00 0.00 3.50
4122 7199 4.202020 GGGAAGTTGTGTGAAGAAAACCTC 60.202 45.833 0.00 0.00 0.00 3.85
4123 7200 4.640647 GGAAGTTGTGTGAAGAAAACCTCT 59.359 41.667 0.00 0.00 35.13 3.69
4124 7201 5.820947 GGAAGTTGTGTGAAGAAAACCTCTA 59.179 40.000 0.00 0.00 32.46 2.43
4125 7202 6.317893 GGAAGTTGTGTGAAGAAAACCTCTAA 59.682 38.462 0.00 0.00 32.46 2.10
4126 7203 6.927294 AGTTGTGTGAAGAAAACCTCTAAG 57.073 37.500 0.00 0.00 32.46 2.18
4127 7204 5.823045 AGTTGTGTGAAGAAAACCTCTAAGG 59.177 40.000 0.00 0.00 42.49 2.69
4128 7205 4.714632 TGTGTGAAGAAAACCTCTAAGGG 58.285 43.478 0.00 0.00 40.58 3.95
4129 7206 3.502595 GTGTGAAGAAAACCTCTAAGGGC 59.497 47.826 0.00 0.00 40.58 5.19
4130 7207 3.394606 TGTGAAGAAAACCTCTAAGGGCT 59.605 43.478 0.00 0.00 40.58 5.19
4131 7208 4.004314 GTGAAGAAAACCTCTAAGGGCTC 58.996 47.826 0.00 0.00 40.58 4.70
4132 7209 3.263261 GAAGAAAACCTCTAAGGGCTCG 58.737 50.000 0.00 0.00 40.58 5.03
4133 7210 2.258109 AGAAAACCTCTAAGGGCTCGT 58.742 47.619 0.00 0.00 40.58 4.18
4134 7211 2.638363 AGAAAACCTCTAAGGGCTCGTT 59.362 45.455 0.00 0.00 40.58 3.85
4135 7212 3.072622 AGAAAACCTCTAAGGGCTCGTTT 59.927 43.478 0.00 0.00 40.58 3.60
4136 7213 2.474410 AACCTCTAAGGGCTCGTTTG 57.526 50.000 0.00 0.00 40.58 2.93
4137 7214 0.613777 ACCTCTAAGGGCTCGTTTGG 59.386 55.000 0.00 0.00 40.58 3.28
4138 7215 0.613777 CCTCTAAGGGCTCGTTTGGT 59.386 55.000 0.00 0.00 0.00 3.67
4139 7216 1.003233 CCTCTAAGGGCTCGTTTGGTT 59.997 52.381 0.00 0.00 0.00 3.67
4140 7217 2.347731 CTCTAAGGGCTCGTTTGGTTC 58.652 52.381 0.00 0.00 0.00 3.62
4141 7218 1.695242 TCTAAGGGCTCGTTTGGTTCA 59.305 47.619 0.00 0.00 0.00 3.18
4142 7219 1.804748 CTAAGGGCTCGTTTGGTTCAC 59.195 52.381 0.00 0.00 0.00 3.18
4143 7220 1.164041 AAGGGCTCGTTTGGTTCACG 61.164 55.000 0.00 0.00 39.08 4.35
4144 7221 2.613506 GGGCTCGTTTGGTTCACGG 61.614 63.158 0.00 0.00 38.23 4.94
4145 7222 2.613506 GGCTCGTTTGGTTCACGGG 61.614 63.158 0.00 0.00 41.33 5.28
4146 7223 2.613506 GCTCGTTTGGTTCACGGGG 61.614 63.158 0.00 0.00 38.64 5.73
4147 7224 1.070105 CTCGTTTGGTTCACGGGGA 59.930 57.895 0.00 0.00 38.23 4.81
4148 7225 0.533308 CTCGTTTGGTTCACGGGGAA 60.533 55.000 0.00 0.00 38.23 3.97
4149 7226 0.107312 TCGTTTGGTTCACGGGGAAA 60.107 50.000 0.00 0.00 37.23 3.13
4150 7227 0.739561 CGTTTGGTTCACGGGGAAAA 59.260 50.000 0.00 0.00 37.23 2.29
4151 7228 1.534385 CGTTTGGTTCACGGGGAAAAC 60.534 52.381 0.00 0.00 37.23 2.43
4152 7229 1.112950 TTTGGTTCACGGGGAAAACC 58.887 50.000 0.00 0.00 42.28 3.27
4162 7239 3.918134 GGGAAAACCCAGGTATCCC 57.082 57.895 19.53 19.53 42.89 3.85
4163 7240 0.106868 GGGAAAACCCAGGTATCCCG 60.107 60.000 19.53 0.00 41.43 5.14
4164 7241 0.106868 GGAAAACCCAGGTATCCCGG 60.107 60.000 9.46 0.00 35.12 5.73
4165 7242 0.750546 GAAAACCCAGGTATCCCGGC 60.751 60.000 0.00 0.00 35.12 6.13
4166 7243 2.219449 AAAACCCAGGTATCCCGGCC 62.219 60.000 0.00 0.00 35.12 6.13
4169 7246 3.093835 CCAGGTATCCCGGCCCAA 61.094 66.667 0.00 0.00 35.12 4.12
4170 7247 2.460853 CCAGGTATCCCGGCCCAAT 61.461 63.158 0.00 0.00 35.12 3.16
4171 7248 1.073199 CAGGTATCCCGGCCCAATC 59.927 63.158 0.00 0.00 35.12 2.67
4172 7249 2.154074 AGGTATCCCGGCCCAATCC 61.154 63.158 0.00 0.00 35.12 3.01
4173 7250 2.434774 GTATCCCGGCCCAATCCC 59.565 66.667 0.00 0.00 0.00 3.85
4174 7251 2.039298 TATCCCGGCCCAATCCCA 60.039 61.111 0.00 0.00 0.00 4.37
4175 7252 2.153401 TATCCCGGCCCAATCCCAG 61.153 63.158 0.00 0.00 0.00 4.45
4186 7263 3.515602 CCAATCCCAGGGATAGAAAGG 57.484 52.381 22.50 14.13 42.27 3.11
4187 7264 2.489802 CCAATCCCAGGGATAGAAAGGC 60.490 54.545 22.50 0.00 42.27 4.35
4188 7265 2.175499 CAATCCCAGGGATAGAAAGGCA 59.825 50.000 22.50 0.00 42.27 4.75
4189 7266 1.213296 TCCCAGGGATAGAAAGGCAC 58.787 55.000 3.01 0.00 0.00 5.01
4190 7267 0.179045 CCCAGGGATAGAAAGGCACG 60.179 60.000 0.00 0.00 0.00 5.34
4191 7268 0.541863 CCAGGGATAGAAAGGCACGT 59.458 55.000 0.00 0.00 0.00 4.49
4192 7269 1.656652 CAGGGATAGAAAGGCACGTG 58.343 55.000 12.28 12.28 0.00 4.49
4193 7270 0.107654 AGGGATAGAAAGGCACGTGC 60.108 55.000 32.15 32.15 41.14 5.34
4194 7271 0.107654 GGGATAGAAAGGCACGTGCT 60.108 55.000 36.84 20.42 41.70 4.40
4195 7272 1.138266 GGGATAGAAAGGCACGTGCTA 59.862 52.381 36.84 22.68 41.70 3.49
4196 7273 2.419574 GGGATAGAAAGGCACGTGCTAA 60.420 50.000 36.84 17.71 41.70 3.09
4197 7274 2.608090 GGATAGAAAGGCACGTGCTAAC 59.392 50.000 36.84 24.61 41.70 2.34
4198 7275 2.088950 TAGAAAGGCACGTGCTAACC 57.911 50.000 36.84 21.92 41.70 2.85
4199 7276 0.396811 AGAAAGGCACGTGCTAACCT 59.603 50.000 36.84 23.79 41.70 3.50
4200 7277 0.796927 GAAAGGCACGTGCTAACCTC 59.203 55.000 36.84 20.82 41.70 3.85
4201 7278 0.396811 AAAGGCACGTGCTAACCTCT 59.603 50.000 36.84 22.70 41.70 3.69
4202 7279 0.037232 AAGGCACGTGCTAACCTCTC 60.037 55.000 36.84 19.38 41.70 3.20
4203 7280 1.448013 GGCACGTGCTAACCTCTCC 60.448 63.158 36.84 15.57 41.70 3.71
4204 7281 1.448013 GCACGTGCTAACCTCTCCC 60.448 63.158 32.55 0.00 38.21 4.30
4205 7282 1.972198 CACGTGCTAACCTCTCCCA 59.028 57.895 0.82 0.00 0.00 4.37
4206 7283 0.108615 CACGTGCTAACCTCTCCCAG 60.109 60.000 0.82 0.00 0.00 4.45
4216 7293 1.885049 CCTCTCCCAGGGAATTCTGA 58.115 55.000 10.32 1.57 38.91 3.27
4217 7294 2.200081 CCTCTCCCAGGGAATTCTGAA 58.800 52.381 10.32 0.00 38.91 3.02
4218 7295 2.172293 CCTCTCCCAGGGAATTCTGAAG 59.828 54.545 10.32 0.00 38.91 3.02
4219 7296 2.172293 CTCTCCCAGGGAATTCTGAAGG 59.828 54.545 10.32 2.39 36.93 3.46
4220 7297 1.213926 CTCCCAGGGAATTCTGAAGGG 59.786 57.143 10.32 15.27 36.93 3.95
4221 7298 0.396278 CCCAGGGAATTCTGAAGGGC 60.396 60.000 0.00 0.00 36.93 5.19
4222 7299 0.396278 CCAGGGAATTCTGAAGGGCC 60.396 60.000 5.23 0.00 36.93 5.80
4223 7300 0.332632 CAGGGAATTCTGAAGGGCCA 59.667 55.000 6.18 0.00 36.93 5.36
4224 7301 1.063417 CAGGGAATTCTGAAGGGCCAT 60.063 52.381 6.18 0.00 36.93 4.40
4225 7302 1.648037 AGGGAATTCTGAAGGGCCATT 59.352 47.619 0.07 0.07 0.00 3.16
4226 7303 2.044908 AGGGAATTCTGAAGGGCCATTT 59.955 45.455 3.12 0.00 0.00 2.32
4227 7304 2.169144 GGGAATTCTGAAGGGCCATTTG 59.831 50.000 3.12 0.42 0.00 2.32
4228 7305 2.169144 GGAATTCTGAAGGGCCATTTGG 59.831 50.000 3.12 0.05 38.53 3.28
4229 7306 2.629017 ATTCTGAAGGGCCATTTGGT 57.371 45.000 3.12 0.00 37.57 3.67
4230 7307 1.923356 TTCTGAAGGGCCATTTGGTC 58.077 50.000 3.12 0.00 39.63 4.02
4231 7308 0.322456 TCTGAAGGGCCATTTGGTCG 60.322 55.000 3.12 0.00 41.79 4.79
4232 7309 0.322456 CTGAAGGGCCATTTGGTCGA 60.322 55.000 3.12 0.00 41.79 4.20
4233 7310 0.322456 TGAAGGGCCATTTGGTCGAG 60.322 55.000 3.12 0.00 41.79 4.04
4234 7311 1.000896 AAGGGCCATTTGGTCGAGG 60.001 57.895 6.18 0.00 41.79 4.63
4235 7312 3.140814 GGGCCATTTGGTCGAGGC 61.141 66.667 4.39 2.61 41.79 4.70
4237 7314 3.140814 GCCATTTGGTCGAGGCCC 61.141 66.667 0.00 0.00 41.25 5.80
4238 7315 2.354729 CCATTTGGTCGAGGCCCA 59.645 61.111 0.00 0.00 0.00 5.36
4239 7316 1.304052 CCATTTGGTCGAGGCCCAA 60.304 57.895 0.00 2.01 40.15 4.12
4240 7317 1.315257 CCATTTGGTCGAGGCCCAAG 61.315 60.000 0.00 0.00 42.63 3.61
4241 7318 0.609131 CATTTGGTCGAGGCCCAAGT 60.609 55.000 0.00 1.40 42.63 3.16
4242 7319 0.322546 ATTTGGTCGAGGCCCAAGTC 60.323 55.000 0.00 0.00 42.63 3.01
4243 7320 1.701031 TTTGGTCGAGGCCCAAGTCA 61.701 55.000 0.00 0.00 42.63 3.41
4244 7321 2.111999 TTGGTCGAGGCCCAAGTCAG 62.112 60.000 0.00 0.00 37.05 3.51
4245 7322 2.266055 GTCGAGGCCCAAGTCAGG 59.734 66.667 0.00 0.00 0.00 3.86
4255 7332 1.523758 CCAAGTCAGGGAAACTTCGG 58.476 55.000 0.00 0.00 34.79 4.30
4256 7333 0.875059 CAAGTCAGGGAAACTTCGGC 59.125 55.000 0.00 0.00 34.79 5.54
4257 7334 0.250770 AAGTCAGGGAAACTTCGGCC 60.251 55.000 0.00 0.00 31.36 6.13
4258 7335 1.674651 GTCAGGGAAACTTCGGCCC 60.675 63.158 0.00 0.00 42.37 5.80
4261 7338 2.045242 GGGAAACTTCGGCCCTCC 60.045 66.667 0.00 0.00 38.85 4.30
4262 7339 2.045242 GGAAACTTCGGCCCTCCC 60.045 66.667 0.00 0.00 0.00 4.30
4263 7340 2.045242 GAAACTTCGGCCCTCCCC 60.045 66.667 0.00 0.00 0.00 4.81
4283 7360 3.861797 CCGAATCCCCGGGACCAG 61.862 72.222 26.32 4.74 45.43 4.00
4284 7361 2.762459 CGAATCCCCGGGACCAGA 60.762 66.667 26.32 11.53 32.98 3.86
4285 7362 2.363975 CGAATCCCCGGGACCAGAA 61.364 63.158 26.32 0.00 32.98 3.02
4286 7363 1.906105 CGAATCCCCGGGACCAGAAA 61.906 60.000 26.32 0.00 32.98 2.52
4287 7364 0.330267 GAATCCCCGGGACCAGAAAA 59.670 55.000 26.32 0.00 32.98 2.29
4288 7365 0.039180 AATCCCCGGGACCAGAAAAC 59.961 55.000 26.32 0.00 32.98 2.43
4289 7366 1.137594 ATCCCCGGGACCAGAAAACA 61.138 55.000 26.32 0.00 32.98 2.83
4290 7367 1.602605 CCCCGGGACCAGAAAACAC 60.603 63.158 26.32 0.00 0.00 3.32
4291 7368 1.602605 CCCGGGACCAGAAAACACC 60.603 63.158 18.48 0.00 0.00 4.16
4292 7369 1.149627 CCGGGACCAGAAAACACCA 59.850 57.895 0.00 0.00 0.00 4.17
4293 7370 0.889186 CCGGGACCAGAAAACACCAG 60.889 60.000 0.00 0.00 0.00 4.00
4294 7371 1.515521 CGGGACCAGAAAACACCAGC 61.516 60.000 0.00 0.00 0.00 4.85
4295 7372 1.179174 GGGACCAGAAAACACCAGCC 61.179 60.000 0.00 0.00 0.00 4.85
4296 7373 0.467290 GGACCAGAAAACACCAGCCA 60.467 55.000 0.00 0.00 0.00 4.75
4297 7374 0.668535 GACCAGAAAACACCAGCCAC 59.331 55.000 0.00 0.00 0.00 5.01
4298 7375 1.101049 ACCAGAAAACACCAGCCACG 61.101 55.000 0.00 0.00 0.00 4.94
4299 7376 0.817634 CCAGAAAACACCAGCCACGA 60.818 55.000 0.00 0.00 0.00 4.35
4300 7377 0.307760 CAGAAAACACCAGCCACGAC 59.692 55.000 0.00 0.00 0.00 4.34
4301 7378 0.180406 AGAAAACACCAGCCACGACT 59.820 50.000 0.00 0.00 0.00 4.18
4302 7379 0.586802 GAAAACACCAGCCACGACTC 59.413 55.000 0.00 0.00 0.00 3.36
4303 7380 1.157870 AAAACACCAGCCACGACTCG 61.158 55.000 0.00 0.00 0.00 4.18
4304 7381 2.306255 AAACACCAGCCACGACTCGT 62.306 55.000 0.00 0.00 42.36 4.18
4313 7390 4.496429 ACGACTCGTGGGAGAAGT 57.504 55.556 2.53 0.00 43.27 3.01
4314 7391 2.255430 ACGACTCGTGGGAGAAGTC 58.745 57.895 2.53 0.00 43.27 3.01
4315 7392 1.242665 ACGACTCGTGGGAGAAGTCC 61.243 60.000 2.53 0.00 43.27 3.85
4326 7403 3.404224 GGAGAAGTCCCTCGTTTCTTT 57.596 47.619 0.00 0.00 36.76 2.52
4327 7404 3.327626 GGAGAAGTCCCTCGTTTCTTTC 58.672 50.000 0.00 0.00 36.76 2.62
4328 7405 2.987821 GAGAAGTCCCTCGTTTCTTTCG 59.012 50.000 0.00 0.00 31.67 3.46
4329 7406 1.459975 GAAGTCCCTCGTTTCTTTCGC 59.540 52.381 0.00 0.00 0.00 4.70
4330 7407 0.680061 AGTCCCTCGTTTCTTTCGCT 59.320 50.000 0.00 0.00 0.00 4.93
4331 7408 1.069255 GTCCCTCGTTTCTTTCGCTC 58.931 55.000 0.00 0.00 0.00 5.03
4332 7409 0.037605 TCCCTCGTTTCTTTCGCTCC 60.038 55.000 0.00 0.00 0.00 4.70
4333 7410 1.019805 CCCTCGTTTCTTTCGCTCCC 61.020 60.000 0.00 0.00 0.00 4.30
4334 7411 0.037232 CCTCGTTTCTTTCGCTCCCT 60.037 55.000 0.00 0.00 0.00 4.20
4335 7412 1.351153 CTCGTTTCTTTCGCTCCCTC 58.649 55.000 0.00 0.00 0.00 4.30
4336 7413 0.966920 TCGTTTCTTTCGCTCCCTCT 59.033 50.000 0.00 0.00 0.00 3.69
4337 7414 2.163815 CTCGTTTCTTTCGCTCCCTCTA 59.836 50.000 0.00 0.00 0.00 2.43
4338 7415 2.758979 TCGTTTCTTTCGCTCCCTCTAT 59.241 45.455 0.00 0.00 0.00 1.98
4339 7416 3.194968 TCGTTTCTTTCGCTCCCTCTATT 59.805 43.478 0.00 0.00 0.00 1.73
4340 7417 3.552294 CGTTTCTTTCGCTCCCTCTATTC 59.448 47.826 0.00 0.00 0.00 1.75
4341 7418 3.438297 TTCTTTCGCTCCCTCTATTCG 57.562 47.619 0.00 0.00 0.00 3.34
4342 7419 1.067212 TCTTTCGCTCCCTCTATTCGC 59.933 52.381 0.00 0.00 0.00 4.70
4343 7420 0.821517 TTTCGCTCCCTCTATTCGCA 59.178 50.000 0.00 0.00 0.00 5.10
4344 7421 0.385751 TTCGCTCCCTCTATTCGCAG 59.614 55.000 0.00 0.00 0.00 5.18
4345 7422 1.663074 CGCTCCCTCTATTCGCAGC 60.663 63.158 0.00 0.00 0.00 5.25
4346 7423 1.745264 GCTCCCTCTATTCGCAGCT 59.255 57.895 0.00 0.00 0.00 4.24
4347 7424 0.962489 GCTCCCTCTATTCGCAGCTA 59.038 55.000 0.00 0.00 0.00 3.32
4348 7425 1.548269 GCTCCCTCTATTCGCAGCTAT 59.452 52.381 0.00 0.00 0.00 2.97
4349 7426 2.028567 GCTCCCTCTATTCGCAGCTATT 60.029 50.000 0.00 0.00 0.00 1.73
4350 7427 3.556004 GCTCCCTCTATTCGCAGCTATTT 60.556 47.826 0.00 0.00 0.00 1.40
4351 7428 4.636249 CTCCCTCTATTCGCAGCTATTTT 58.364 43.478 0.00 0.00 0.00 1.82
4352 7429 5.036117 TCCCTCTATTCGCAGCTATTTTT 57.964 39.130 0.00 0.00 0.00 1.94
4431 7508 8.455598 AAATTTCAAAAATAATACACCGTCGG 57.544 30.769 10.48 10.48 0.00 4.79
4432 7509 4.603231 TCAAAAATAATACACCGTCGGC 57.397 40.909 12.28 0.00 0.00 5.54
4433 7510 3.374678 TCAAAAATAATACACCGTCGGCC 59.625 43.478 12.28 0.00 0.00 6.13
4434 7511 1.957668 AAATAATACACCGTCGGCCC 58.042 50.000 12.28 0.00 0.00 5.80
4435 7512 0.249573 AATAATACACCGTCGGCCCG 60.250 55.000 12.28 0.00 0.00 6.13
4436 7513 2.704342 ATAATACACCGTCGGCCCGC 62.704 60.000 12.28 0.00 0.00 6.13
4458 7535 2.904131 GGCTGACTGGGCCTAGTC 59.096 66.667 35.51 35.51 45.57 2.59
4469 7546 3.390521 CCTAGTCGGCCCACAGCA 61.391 66.667 2.46 0.00 46.50 4.41
4470 7547 2.185350 CTAGTCGGCCCACAGCAG 59.815 66.667 2.46 0.00 46.50 4.24
4471 7548 3.376935 CTAGTCGGCCCACAGCAGG 62.377 68.421 2.46 0.00 46.50 4.85
4477 7554 2.999063 GCCCACAGCAGGCCAATT 60.999 61.111 5.01 0.00 45.16 2.32
4478 7555 2.975536 CCCACAGCAGGCCAATTG 59.024 61.111 5.01 1.61 0.00 2.32
4479 7556 2.652095 CCCACAGCAGGCCAATTGG 61.652 63.158 20.81 20.81 38.53 3.16
4480 7557 1.607178 CCACAGCAGGCCAATTGGA 60.607 57.895 29.02 0.00 37.39 3.53
4481 7558 0.974010 CCACAGCAGGCCAATTGGAT 60.974 55.000 29.02 12.73 37.39 3.41
4482 7559 0.899720 CACAGCAGGCCAATTGGATT 59.100 50.000 29.02 11.92 37.39 3.01
4483 7560 1.134907 CACAGCAGGCCAATTGGATTC 60.135 52.381 29.02 15.61 37.39 2.52
4484 7561 0.462789 CAGCAGGCCAATTGGATTCC 59.537 55.000 29.02 19.05 37.39 3.01
4485 7562 0.041535 AGCAGGCCAATTGGATTCCA 59.958 50.000 29.02 0.00 37.39 3.53
4486 7563 0.462789 GCAGGCCAATTGGATTCCAG 59.537 55.000 29.02 16.75 37.39 3.86
4487 7564 1.856629 CAGGCCAATTGGATTCCAGT 58.143 50.000 29.02 0.00 37.39 4.00
4488 7565 1.753073 CAGGCCAATTGGATTCCAGTC 59.247 52.381 29.02 7.29 37.39 3.51
4489 7566 0.740737 GGCCAATTGGATTCCAGTCG 59.259 55.000 29.02 0.00 37.39 4.18
4490 7567 0.740737 GCCAATTGGATTCCAGTCGG 59.259 55.000 29.02 2.97 37.39 4.79
4491 7568 0.740737 CCAATTGGATTCCAGTCGGC 59.259 55.000 20.50 0.00 37.39 5.54
4492 7569 0.740737 CAATTGGATTCCAGTCGGCC 59.259 55.000 5.36 0.00 33.81 6.13
4493 7570 0.625849 AATTGGATTCCAGTCGGCCT 59.374 50.000 5.36 0.00 33.81 5.19
4494 7571 1.507140 ATTGGATTCCAGTCGGCCTA 58.493 50.000 5.36 0.00 33.81 3.93
4495 7572 0.539986 TTGGATTCCAGTCGGCCTAC 59.460 55.000 5.36 0.00 33.81 3.18
4496 7573 0.616395 TGGATTCCAGTCGGCCTACA 60.616 55.000 10.45 0.00 0.00 2.74
4497 7574 0.105039 GGATTCCAGTCGGCCTACAG 59.895 60.000 10.45 0.99 0.00 2.74
4498 7575 0.530870 GATTCCAGTCGGCCTACAGC 60.531 60.000 10.45 0.00 42.60 4.40
4499 7576 0.978146 ATTCCAGTCGGCCTACAGCT 60.978 55.000 10.45 0.00 43.05 4.24
4507 7584 3.775654 GCCTACAGCTGGCCGACT 61.776 66.667 19.93 0.00 44.32 4.18
4508 7585 2.185350 CCTACAGCTGGCCGACTG 59.815 66.667 19.93 20.22 39.86 3.51
4509 7586 2.185350 CTACAGCTGGCCGACTGG 59.815 66.667 24.17 7.92 38.25 4.00
4528 7605 4.704833 CCCTGTCGGCCCACTGTG 62.705 72.222 1.09 0.00 0.00 3.66
4529 7606 4.704833 CCTGTCGGCCCACTGTGG 62.705 72.222 20.01 20.01 37.25 4.17
4538 7615 3.281240 CCACTGTGGGCTGATTGC 58.719 61.111 19.23 0.00 41.94 3.56
4539 7616 2.693762 CCACTGTGGGCTGATTGCG 61.694 63.158 19.23 0.00 44.05 4.85
4540 7617 1.968017 CACTGTGGGCTGATTGCGT 60.968 57.895 0.00 0.00 44.05 5.24
4541 7618 1.672356 ACTGTGGGCTGATTGCGTC 60.672 57.895 0.00 0.00 44.05 5.19
4542 7619 1.376424 CTGTGGGCTGATTGCGTCT 60.376 57.895 0.00 0.00 44.05 4.18
4543 7620 1.642037 CTGTGGGCTGATTGCGTCTG 61.642 60.000 0.00 0.00 44.05 3.51
4544 7621 1.375908 GTGGGCTGATTGCGTCTGA 60.376 57.895 0.90 0.00 44.05 3.27
4545 7622 0.955428 GTGGGCTGATTGCGTCTGAA 60.955 55.000 0.90 0.00 44.05 3.02
4546 7623 0.955428 TGGGCTGATTGCGTCTGAAC 60.955 55.000 0.90 0.00 44.05 3.18
4547 7624 1.648467 GGGCTGATTGCGTCTGAACC 61.648 60.000 0.90 0.00 44.05 3.62
4548 7625 0.674895 GGCTGATTGCGTCTGAACCT 60.675 55.000 0.90 0.00 44.05 3.50
4549 7626 1.405526 GGCTGATTGCGTCTGAACCTA 60.406 52.381 0.90 0.00 44.05 3.08
4550 7627 2.346803 GCTGATTGCGTCTGAACCTAA 58.653 47.619 0.90 0.00 0.00 2.69
4551 7628 2.939103 GCTGATTGCGTCTGAACCTAAT 59.061 45.455 0.90 0.00 0.00 1.73
4552 7629 3.375299 GCTGATTGCGTCTGAACCTAATT 59.625 43.478 0.90 0.00 0.00 1.40
4553 7630 4.728882 GCTGATTGCGTCTGAACCTAATTG 60.729 45.833 0.00 0.00 0.00 2.32
4554 7631 3.689161 TGATTGCGTCTGAACCTAATTGG 59.311 43.478 0.00 0.00 42.93 3.16
4555 7632 1.448985 TGCGTCTGAACCTAATTGGC 58.551 50.000 0.00 0.00 40.22 4.52
4556 7633 1.003118 TGCGTCTGAACCTAATTGGCT 59.997 47.619 0.00 0.00 40.22 4.75
4557 7634 1.666189 GCGTCTGAACCTAATTGGCTC 59.334 52.381 0.00 0.00 40.22 4.70
4558 7635 1.927174 CGTCTGAACCTAATTGGCTCG 59.073 52.381 0.00 0.00 40.22 5.03
4559 7636 1.666189 GTCTGAACCTAATTGGCTCGC 59.334 52.381 0.00 0.00 40.22 5.03
4560 7637 1.555075 TCTGAACCTAATTGGCTCGCT 59.445 47.619 0.00 0.00 40.22 4.93
4561 7638 1.667724 CTGAACCTAATTGGCTCGCTG 59.332 52.381 0.00 0.00 40.22 5.18
4562 7639 1.003118 TGAACCTAATTGGCTCGCTGT 59.997 47.619 0.00 0.00 40.22 4.40
4563 7640 1.398390 GAACCTAATTGGCTCGCTGTG 59.602 52.381 0.00 0.00 40.22 3.66
4564 7641 0.392998 ACCTAATTGGCTCGCTGTGG 60.393 55.000 0.00 0.00 40.22 4.17
4565 7642 1.097547 CCTAATTGGCTCGCTGTGGG 61.098 60.000 0.00 0.00 0.00 4.61
4566 7643 1.718757 CTAATTGGCTCGCTGTGGGC 61.719 60.000 4.05 4.05 37.64 5.36
4567 7644 2.196997 TAATTGGCTCGCTGTGGGCT 62.197 55.000 13.44 0.00 39.13 5.19
4568 7645 2.196997 AATTGGCTCGCTGTGGGCTA 62.197 55.000 13.44 3.56 39.13 3.93
4569 7646 2.196997 ATTGGCTCGCTGTGGGCTAA 62.197 55.000 14.26 14.26 39.13 3.09
4570 7647 2.190578 GGCTCGCTGTGGGCTAAT 59.809 61.111 13.44 0.00 39.13 1.73
4571 7648 1.452108 GGCTCGCTGTGGGCTAATT 60.452 57.895 13.44 0.00 39.13 1.40
4572 7649 1.718757 GGCTCGCTGTGGGCTAATTG 61.719 60.000 13.44 0.00 39.13 2.32
4573 7650 1.026718 GCTCGCTGTGGGCTAATTGT 61.027 55.000 5.68 0.00 39.13 2.71
4574 7651 1.453155 CTCGCTGTGGGCTAATTGTT 58.547 50.000 0.00 0.00 39.13 2.83
4575 7652 1.812571 CTCGCTGTGGGCTAATTGTTT 59.187 47.619 0.00 0.00 39.13 2.83
4576 7653 2.228822 CTCGCTGTGGGCTAATTGTTTT 59.771 45.455 0.00 0.00 39.13 2.43
4577 7654 2.030363 TCGCTGTGGGCTAATTGTTTTG 60.030 45.455 0.00 0.00 39.13 2.44
4578 7655 2.068519 GCTGTGGGCTAATTGTTTTGC 58.931 47.619 0.00 0.00 38.06 3.68
4579 7656 2.547642 GCTGTGGGCTAATTGTTTTGCA 60.548 45.455 0.00 0.00 35.61 4.08
4580 7657 3.726607 CTGTGGGCTAATTGTTTTGCAA 58.273 40.909 0.00 0.00 41.89 4.08
4581 7658 4.125703 CTGTGGGCTAATTGTTTTGCAAA 58.874 39.130 8.05 8.05 40.91 3.68
4582 7659 4.517285 TGTGGGCTAATTGTTTTGCAAAA 58.483 34.783 20.46 20.46 40.91 2.44
4583 7660 4.943705 TGTGGGCTAATTGTTTTGCAAAAA 59.056 33.333 25.40 12.25 40.91 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.037326 GTTGATGACGACCTCCTGCA 60.037 55.000 0.00 0.00 0.00 4.41
88 92 1.113788 GCTGATGAGGAGCTCAGTCT 58.886 55.000 17.19 2.98 44.08 3.24
151 157 3.848975 GAGGGGAATGAGATGGATATGGT 59.151 47.826 0.00 0.00 0.00 3.55
165 171 1.077429 GAAGCAAGCGGAGGGGAAT 60.077 57.895 0.00 0.00 0.00 3.01
333 352 5.565455 ATTTTCCAAAAATCTTGCCCAGA 57.435 34.783 0.00 0.00 35.33 3.86
526 564 0.251916 CAAATCCCTGGACTACGGCA 59.748 55.000 0.00 0.00 0.00 5.69
668 737 1.205655 CAGTAGCAGCAGCAGTCCTTA 59.794 52.381 3.17 0.00 45.49 2.69
876 947 8.147704 TGGTCCAAAAAGATTCCATCTAAAAAC 58.852 33.333 0.00 0.00 39.08 2.43
885 956 5.147032 AGACAATGGTCCAAAAAGATTCCA 58.853 37.500 0.00 0.00 45.48 3.53
950 1024 3.737774 CGCATTCGATGATTAGAGCAAGA 59.262 43.478 0.00 0.00 38.10 3.02
972 1046 2.169832 TCACCTGTAAGAGTTGCTGC 57.830 50.000 0.00 0.00 34.07 5.25
973 1047 5.237815 TGTTATCACCTGTAAGAGTTGCTG 58.762 41.667 0.00 0.00 34.07 4.41
975 1049 4.631813 CCTGTTATCACCTGTAAGAGTTGC 59.368 45.833 0.00 0.00 34.07 4.17
1174 1249 4.156556 ACTGGCATTAGCACAAACATACTG 59.843 41.667 0.00 0.00 44.61 2.74
1265 1340 2.673368 GGCATTGGTGTACTTCTCTTCG 59.327 50.000 0.00 0.00 0.00 3.79
1419 1494 1.506493 CAGTCTTGTCACTGAGGTGC 58.494 55.000 0.00 0.00 45.92 5.01
1445 1525 4.342665 AGAGAGAAGAATATGACCCCGTTC 59.657 45.833 0.00 0.00 0.00 3.95
1526 1732 5.874810 ACGAGAAAGAGCATATTAGCACAAA 59.125 36.000 0.00 0.00 36.85 2.83
1687 1893 0.540133 ACACCTGCATTGCATCCACA 60.540 50.000 12.53 0.00 38.13 4.17
1912 2118 8.713708 TCCCATTTTACAAAAATACCTTCTCA 57.286 30.769 0.00 0.00 0.00 3.27
2252 4895 3.494251 GGACAAATGGCATCAAAACACAC 59.506 43.478 0.00 0.00 0.00 3.82
2736 5412 1.464687 GCATTGACTACAGCAAGCACG 60.465 52.381 0.00 0.00 0.00 5.34
2830 5514 8.133024 TGTGTAGGCCAATTGAATTATTCTTT 57.867 30.769 5.01 0.00 0.00 2.52
2867 5551 6.820656 ACAGAGGAACTAGCAATTAATCTGTG 59.179 38.462 3.42 0.00 42.26 3.66
2973 5664 4.126437 CAAACATGGTCAGACACTGTACA 58.874 43.478 2.17 0.00 32.61 2.90
2979 5670 6.371809 TTTCTTACAAACATGGTCAGACAC 57.628 37.500 2.17 0.00 0.00 3.67
3098 5819 2.427095 GGTGCAAAGTCTGACCAAGTTT 59.573 45.455 3.76 0.00 0.00 2.66
3177 5916 5.580691 GCCTTGAAGGTGCCAATAAATTTAC 59.419 40.000 13.58 0.00 37.80 2.01
3178 5917 5.337975 GGCCTTGAAGGTGCCAATAAATTTA 60.338 40.000 13.58 0.00 44.70 1.40
3179 5918 4.565444 GGCCTTGAAGGTGCCAATAAATTT 60.565 41.667 13.58 0.00 44.70 1.82
3180 5919 3.055167 GGCCTTGAAGGTGCCAATAAATT 60.055 43.478 13.58 0.00 44.70 1.82
3381 6219 6.228258 ACGTTTAGGATGCTTACTTTCTTCA 58.772 36.000 0.00 0.00 0.00 3.02
3402 6466 6.087555 CACTTTATTAATTTGCTTTGCGACGT 59.912 34.615 0.00 0.00 0.00 4.34
3483 6547 7.918562 GCAAGTTCACATACAACCTTTAAGAAA 59.081 33.333 0.00 0.00 0.00 2.52
3530 6595 7.977789 TTTCAAGCAATCACTACATCAGTTA 57.022 32.000 0.00 0.00 34.26 2.24
3573 6638 0.538584 CTGATACTGTGGCTGGCTGA 59.461 55.000 2.00 0.00 0.00 4.26
3579 6644 4.392921 GTCACATACTGATACTGTGGCT 57.607 45.455 0.00 0.00 41.19 4.75
3879 6956 7.606456 TCACACCTTTCTAGTGATAATCAAACC 59.394 37.037 0.00 0.00 37.36 3.27
3895 6972 7.259290 TCAAGAACTAACAATCACACCTTTC 57.741 36.000 0.00 0.00 0.00 2.62
3951 7028 6.042781 TCCTTTTCCCGCACTATACTAATCAT 59.957 38.462 0.00 0.00 0.00 2.45
3998 7075 2.683867 AGTAGCGATCGGGTATAGCATC 59.316 50.000 18.30 0.00 38.57 3.91
4001 7078 1.132643 CCAGTAGCGATCGGGTATAGC 59.867 57.143 18.30 0.00 36.53 2.97
4033 7110 9.436957 GAACATATACATACGATCAGGGAAATT 57.563 33.333 0.00 0.00 0.00 1.82
4036 7113 7.533289 TGAACATATACATACGATCAGGGAA 57.467 36.000 0.00 0.00 0.00 3.97
4037 7114 7.615757 AGATGAACATATACATACGATCAGGGA 59.384 37.037 0.00 0.00 0.00 4.20
4094 7171 4.139859 TCTTCACACAACTTCCCGTAAA 57.860 40.909 0.00 0.00 0.00 2.01
4095 7172 3.823281 TCTTCACACAACTTCCCGTAA 57.177 42.857 0.00 0.00 0.00 3.18
4096 7173 3.823281 TTCTTCACACAACTTCCCGTA 57.177 42.857 0.00 0.00 0.00 4.02
4097 7174 2.702592 TTCTTCACACAACTTCCCGT 57.297 45.000 0.00 0.00 0.00 5.28
4098 7175 3.488553 GGTTTTCTTCACACAACTTCCCG 60.489 47.826 0.00 0.00 0.00 5.14
4099 7176 3.699538 AGGTTTTCTTCACACAACTTCCC 59.300 43.478 0.00 0.00 0.00 3.97
4100 7177 4.640647 AGAGGTTTTCTTCACACAACTTCC 59.359 41.667 0.00 0.00 29.61 3.46
4101 7178 5.819825 AGAGGTTTTCTTCACACAACTTC 57.180 39.130 0.00 0.00 29.61 3.01
4102 7179 6.318900 CCTTAGAGGTTTTCTTCACACAACTT 59.681 38.462 0.00 0.00 37.36 2.66
4103 7180 5.823045 CCTTAGAGGTTTTCTTCACACAACT 59.177 40.000 0.00 0.00 37.36 3.16
4104 7181 5.008712 CCCTTAGAGGTTTTCTTCACACAAC 59.991 44.000 0.00 0.00 37.36 3.32
4105 7182 5.130350 CCCTTAGAGGTTTTCTTCACACAA 58.870 41.667 0.00 0.00 37.36 3.33
4106 7183 4.714632 CCCTTAGAGGTTTTCTTCACACA 58.285 43.478 0.00 0.00 37.36 3.72
4107 7184 3.502595 GCCCTTAGAGGTTTTCTTCACAC 59.497 47.826 0.00 0.00 37.36 3.82
4108 7185 3.394606 AGCCCTTAGAGGTTTTCTTCACA 59.605 43.478 0.00 0.00 37.36 3.58
4109 7186 4.004314 GAGCCCTTAGAGGTTTTCTTCAC 58.996 47.826 0.00 0.00 37.36 3.18
4110 7187 3.306780 CGAGCCCTTAGAGGTTTTCTTCA 60.307 47.826 0.00 0.00 37.36 3.02
4111 7188 3.263261 CGAGCCCTTAGAGGTTTTCTTC 58.737 50.000 0.00 0.00 37.36 2.87
4112 7189 2.638363 ACGAGCCCTTAGAGGTTTTCTT 59.362 45.455 0.00 0.00 37.36 2.52
4113 7190 2.258109 ACGAGCCCTTAGAGGTTTTCT 58.742 47.619 0.00 0.00 40.06 2.52
4114 7191 2.764439 ACGAGCCCTTAGAGGTTTTC 57.236 50.000 0.00 0.00 31.93 2.29
4115 7192 3.146847 CAAACGAGCCCTTAGAGGTTTT 58.853 45.455 0.00 0.00 31.93 2.43
4116 7193 2.552373 CCAAACGAGCCCTTAGAGGTTT 60.552 50.000 0.00 0.00 31.93 3.27
4117 7194 1.003233 CCAAACGAGCCCTTAGAGGTT 59.997 52.381 0.00 0.00 31.93 3.50
4118 7195 0.613777 CCAAACGAGCCCTTAGAGGT 59.386 55.000 0.00 0.00 31.93 3.85
4119 7196 0.613777 ACCAAACGAGCCCTTAGAGG 59.386 55.000 0.00 0.00 34.30 3.69
4120 7197 2.289444 TGAACCAAACGAGCCCTTAGAG 60.289 50.000 0.00 0.00 0.00 2.43
4121 7198 1.695242 TGAACCAAACGAGCCCTTAGA 59.305 47.619 0.00 0.00 0.00 2.10
4122 7199 1.804748 GTGAACCAAACGAGCCCTTAG 59.195 52.381 0.00 0.00 0.00 2.18
4123 7200 1.874739 CGTGAACCAAACGAGCCCTTA 60.875 52.381 0.00 0.00 43.68 2.69
4124 7201 1.164041 CGTGAACCAAACGAGCCCTT 61.164 55.000 0.00 0.00 43.68 3.95
4125 7202 1.597027 CGTGAACCAAACGAGCCCT 60.597 57.895 0.00 0.00 43.68 5.19
4126 7203 2.613506 CCGTGAACCAAACGAGCCC 61.614 63.158 0.00 0.00 43.68 5.19
4127 7204 2.613506 CCCGTGAACCAAACGAGCC 61.614 63.158 0.00 0.00 43.68 4.70
4128 7205 2.613506 CCCCGTGAACCAAACGAGC 61.614 63.158 0.00 0.00 43.68 5.03
4129 7206 0.533308 TTCCCCGTGAACCAAACGAG 60.533 55.000 0.00 0.00 43.68 4.18
4130 7207 0.107312 TTTCCCCGTGAACCAAACGA 60.107 50.000 0.00 0.00 43.68 3.85
4131 7208 0.739561 TTTTCCCCGTGAACCAAACG 59.260 50.000 0.00 0.00 40.70 3.60
4132 7209 1.202440 GGTTTTCCCCGTGAACCAAAC 60.202 52.381 0.00 0.00 41.86 2.93
4133 7210 1.112950 GGTTTTCCCCGTGAACCAAA 58.887 50.000 0.00 0.00 41.86 3.28
4134 7211 2.809952 GGTTTTCCCCGTGAACCAA 58.190 52.632 0.00 0.00 41.86 3.67
4135 7212 4.583086 GGTTTTCCCCGTGAACCA 57.417 55.556 0.00 0.00 41.86 3.67
4156 7233 2.411765 CTGGGATTGGGCCGGGATAC 62.412 65.000 2.18 0.00 0.00 2.24
4157 7234 2.039298 TGGGATTGGGCCGGGATA 60.039 61.111 2.18 0.00 0.00 2.59
4158 7235 3.501911 CTGGGATTGGGCCGGGAT 61.502 66.667 2.18 0.00 0.00 3.85
4162 7239 2.129555 CTATCCCTGGGATTGGGCCG 62.130 65.000 32.07 11.03 39.79 6.13
4163 7240 0.772124 TCTATCCCTGGGATTGGGCC 60.772 60.000 32.07 0.00 39.79 5.80
4164 7241 1.149101 TTCTATCCCTGGGATTGGGC 58.851 55.000 32.07 0.00 39.79 5.36
4165 7242 2.108952 CCTTTCTATCCCTGGGATTGGG 59.891 54.545 32.07 21.31 39.79 4.12
4166 7243 2.489802 GCCTTTCTATCCCTGGGATTGG 60.490 54.545 32.07 23.42 39.79 3.16
4167 7244 2.175499 TGCCTTTCTATCCCTGGGATTG 59.825 50.000 32.07 28.50 39.79 2.67
4168 7245 2.175715 GTGCCTTTCTATCCCTGGGATT 59.824 50.000 32.07 16.65 39.79 3.01
4169 7246 1.777272 GTGCCTTTCTATCCCTGGGAT 59.223 52.381 30.04 30.04 45.40 3.85
4170 7247 1.213296 GTGCCTTTCTATCCCTGGGA 58.787 55.000 19.69 19.69 35.55 4.37
4171 7248 0.179045 CGTGCCTTTCTATCCCTGGG 60.179 60.000 6.33 6.33 0.00 4.45
4172 7249 0.541863 ACGTGCCTTTCTATCCCTGG 59.458 55.000 0.00 0.00 0.00 4.45
4173 7250 1.656652 CACGTGCCTTTCTATCCCTG 58.343 55.000 0.82 0.00 0.00 4.45
4174 7251 0.107654 GCACGTGCCTTTCTATCCCT 60.108 55.000 30.12 0.00 34.31 4.20
4175 7252 0.107654 AGCACGTGCCTTTCTATCCC 60.108 55.000 35.51 5.06 43.38 3.85
4176 7253 2.596904 TAGCACGTGCCTTTCTATCC 57.403 50.000 35.51 5.62 43.38 2.59
4177 7254 2.608090 GGTTAGCACGTGCCTTTCTATC 59.392 50.000 35.51 18.92 43.38 2.08
4178 7255 2.236395 AGGTTAGCACGTGCCTTTCTAT 59.764 45.455 35.51 18.52 43.38 1.98
4179 7256 1.621814 AGGTTAGCACGTGCCTTTCTA 59.378 47.619 35.51 18.93 43.38 2.10
4180 7257 0.396811 AGGTTAGCACGTGCCTTTCT 59.603 50.000 35.51 24.10 43.38 2.52
4181 7258 0.796927 GAGGTTAGCACGTGCCTTTC 59.203 55.000 35.51 22.37 43.38 2.62
4182 7259 0.396811 AGAGGTTAGCACGTGCCTTT 59.603 50.000 35.51 20.80 43.38 3.11
4183 7260 0.037232 GAGAGGTTAGCACGTGCCTT 60.037 55.000 35.51 21.57 43.38 4.35
4184 7261 1.592223 GAGAGGTTAGCACGTGCCT 59.408 57.895 35.51 25.15 43.38 4.75
4185 7262 1.448013 GGAGAGGTTAGCACGTGCC 60.448 63.158 35.51 20.88 43.38 5.01
4186 7263 1.448013 GGGAGAGGTTAGCACGTGC 60.448 63.158 32.79 32.79 42.49 5.34
4187 7264 0.108615 CTGGGAGAGGTTAGCACGTG 60.109 60.000 12.28 12.28 0.00 4.49
4188 7265 1.258445 CCTGGGAGAGGTTAGCACGT 61.258 60.000 0.00 0.00 37.02 4.49
4189 7266 1.517832 CCTGGGAGAGGTTAGCACG 59.482 63.158 0.00 0.00 37.02 5.34
4190 7267 0.617820 TCCCTGGGAGAGGTTAGCAC 60.618 60.000 12.53 0.00 40.87 4.40
4191 7268 0.118346 TTCCCTGGGAGAGGTTAGCA 59.882 55.000 16.38 0.00 40.87 3.49
4192 7269 1.512735 ATTCCCTGGGAGAGGTTAGC 58.487 55.000 16.38 0.00 40.87 3.09
4193 7270 3.135530 CAGAATTCCCTGGGAGAGGTTAG 59.864 52.174 16.38 0.70 40.87 2.34
4194 7271 3.115390 CAGAATTCCCTGGGAGAGGTTA 58.885 50.000 16.38 0.00 40.87 2.85
4195 7272 1.918957 CAGAATTCCCTGGGAGAGGTT 59.081 52.381 16.38 9.67 40.87 3.50
4196 7273 1.081174 TCAGAATTCCCTGGGAGAGGT 59.919 52.381 16.38 2.34 40.87 3.85
4197 7274 1.885049 TCAGAATTCCCTGGGAGAGG 58.115 55.000 16.38 5.66 42.38 3.69
4198 7275 2.172293 CCTTCAGAATTCCCTGGGAGAG 59.828 54.545 16.38 5.66 34.99 3.20
4199 7276 2.200081 CCTTCAGAATTCCCTGGGAGA 58.800 52.381 16.38 6.53 34.99 3.71
4200 7277 1.213926 CCCTTCAGAATTCCCTGGGAG 59.786 57.143 16.38 3.92 34.99 4.30
4201 7278 1.298953 CCCTTCAGAATTCCCTGGGA 58.701 55.000 12.53 12.53 34.99 4.37
4202 7279 0.396278 GCCCTTCAGAATTCCCTGGG 60.396 60.000 6.33 6.33 34.99 4.45
4203 7280 0.396278 GGCCCTTCAGAATTCCCTGG 60.396 60.000 0.65 0.00 34.99 4.45
4204 7281 0.332632 TGGCCCTTCAGAATTCCCTG 59.667 55.000 0.00 0.00 35.55 4.45
4205 7282 1.312884 ATGGCCCTTCAGAATTCCCT 58.687 50.000 0.00 0.00 0.00 4.20
4206 7283 2.165357 AATGGCCCTTCAGAATTCCC 57.835 50.000 0.00 0.00 0.00 3.97
4207 7284 2.169144 CCAAATGGCCCTTCAGAATTCC 59.831 50.000 0.00 0.00 0.00 3.01
4208 7285 2.833943 ACCAAATGGCCCTTCAGAATTC 59.166 45.455 0.00 0.00 39.32 2.17
4209 7286 2.833943 GACCAAATGGCCCTTCAGAATT 59.166 45.455 0.00 0.00 39.32 2.17
4210 7287 2.460669 GACCAAATGGCCCTTCAGAAT 58.539 47.619 0.00 0.00 39.32 2.40
4211 7288 1.886222 CGACCAAATGGCCCTTCAGAA 60.886 52.381 0.00 0.00 39.32 3.02
4212 7289 0.322456 CGACCAAATGGCCCTTCAGA 60.322 55.000 0.00 0.00 39.32 3.27
4213 7290 0.322456 TCGACCAAATGGCCCTTCAG 60.322 55.000 0.00 0.00 39.32 3.02
4214 7291 0.322456 CTCGACCAAATGGCCCTTCA 60.322 55.000 0.00 0.00 39.32 3.02
4215 7292 1.032114 CCTCGACCAAATGGCCCTTC 61.032 60.000 0.00 0.00 39.32 3.46
4216 7293 1.000896 CCTCGACCAAATGGCCCTT 60.001 57.895 0.00 0.00 39.32 3.95
4217 7294 2.677228 CCTCGACCAAATGGCCCT 59.323 61.111 0.00 0.00 39.32 5.19
4218 7295 3.140814 GCCTCGACCAAATGGCCC 61.141 66.667 0.00 0.00 39.49 5.80
4220 7297 3.140814 GGGCCTCGACCAAATGGC 61.141 66.667 0.84 2.61 44.22 4.40
4221 7298 2.354729 TGGGCCTCGACCAAATGG 59.645 61.111 4.53 0.00 38.06 3.16
4226 7303 2.525629 TGACTTGGGCCTCGACCA 60.526 61.111 4.53 0.00 40.08 4.02
4227 7304 2.266055 CTGACTTGGGCCTCGACC 59.734 66.667 4.53 0.00 0.00 4.79
4228 7305 2.266055 CCTGACTTGGGCCTCGAC 59.734 66.667 4.53 0.00 0.00 4.20
4229 7306 3.003173 CCCTGACTTGGGCCTCGA 61.003 66.667 4.53 0.00 40.84 4.04
4230 7307 2.124507 TTTCCCTGACTTGGGCCTCG 62.125 60.000 4.53 0.00 46.67 4.63
4231 7308 0.609406 GTTTCCCTGACTTGGGCCTC 60.609 60.000 4.53 0.00 46.67 4.70
4232 7309 1.068352 AGTTTCCCTGACTTGGGCCT 61.068 55.000 4.53 0.00 46.67 5.19
4233 7310 0.178961 AAGTTTCCCTGACTTGGGCC 60.179 55.000 0.00 0.00 46.67 5.80
4234 7311 1.248486 GAAGTTTCCCTGACTTGGGC 58.752 55.000 0.00 0.00 46.67 5.36
4236 7313 1.523758 CCGAAGTTTCCCTGACTTGG 58.476 55.000 0.00 0.00 37.46 3.61
4237 7314 0.875059 GCCGAAGTTTCCCTGACTTG 59.125 55.000 0.00 0.00 37.46 3.16
4238 7315 0.250770 GGCCGAAGTTTCCCTGACTT 60.251 55.000 0.00 0.00 39.90 3.01
4239 7316 1.375326 GGCCGAAGTTTCCCTGACT 59.625 57.895 0.00 0.00 0.00 3.41
4240 7317 1.674651 GGGCCGAAGTTTCCCTGAC 60.675 63.158 0.00 0.00 37.08 3.51
4241 7318 2.754375 GGGCCGAAGTTTCCCTGA 59.246 61.111 0.00 0.00 37.08 3.86
4244 7321 2.045242 GGAGGGCCGAAGTTTCCC 60.045 66.667 0.00 1.70 40.36 3.97
4245 7322 2.045242 GGGAGGGCCGAAGTTTCC 60.045 66.667 0.00 0.00 33.83 3.13
4246 7323 2.045242 GGGGAGGGCCGAAGTTTC 60.045 66.667 0.00 0.00 33.83 2.78
4247 7324 4.029809 CGGGGAGGGCCGAAGTTT 62.030 66.667 0.00 0.00 33.83 2.66
4267 7344 1.906105 TTTCTGGTCCCGGGGATTCG 61.906 60.000 23.50 10.37 32.73 3.34
4268 7345 0.330267 TTTTCTGGTCCCGGGGATTC 59.670 55.000 23.50 15.07 32.73 2.52
4269 7346 0.039180 GTTTTCTGGTCCCGGGGATT 59.961 55.000 23.50 0.00 32.73 3.01
4270 7347 1.137594 TGTTTTCTGGTCCCGGGGAT 61.138 55.000 23.50 0.00 32.73 3.85
4271 7348 1.770927 TGTTTTCTGGTCCCGGGGA 60.771 57.895 23.50 12.99 0.00 4.81
4272 7349 1.602605 GTGTTTTCTGGTCCCGGGG 60.603 63.158 23.50 6.77 0.00 5.73
4273 7350 1.602605 GGTGTTTTCTGGTCCCGGG 60.603 63.158 16.85 16.85 0.00 5.73
4274 7351 0.889186 CTGGTGTTTTCTGGTCCCGG 60.889 60.000 0.00 0.00 0.00 5.73
4275 7352 1.515521 GCTGGTGTTTTCTGGTCCCG 61.516 60.000 0.00 0.00 0.00 5.14
4276 7353 1.179174 GGCTGGTGTTTTCTGGTCCC 61.179 60.000 0.00 0.00 0.00 4.46
4277 7354 0.467290 TGGCTGGTGTTTTCTGGTCC 60.467 55.000 0.00 0.00 0.00 4.46
4278 7355 0.668535 GTGGCTGGTGTTTTCTGGTC 59.331 55.000 0.00 0.00 0.00 4.02
4279 7356 1.101049 CGTGGCTGGTGTTTTCTGGT 61.101 55.000 0.00 0.00 0.00 4.00
4280 7357 0.817634 TCGTGGCTGGTGTTTTCTGG 60.818 55.000 0.00 0.00 0.00 3.86
4281 7358 0.307760 GTCGTGGCTGGTGTTTTCTG 59.692 55.000 0.00 0.00 0.00 3.02
4282 7359 0.180406 AGTCGTGGCTGGTGTTTTCT 59.820 50.000 0.00 0.00 0.00 2.52
4283 7360 0.586802 GAGTCGTGGCTGGTGTTTTC 59.413 55.000 0.00 0.00 0.00 2.29
4284 7361 1.157870 CGAGTCGTGGCTGGTGTTTT 61.158 55.000 3.82 0.00 0.00 2.43
4285 7362 1.594293 CGAGTCGTGGCTGGTGTTT 60.594 57.895 3.82 0.00 0.00 2.83
4286 7363 2.029073 CGAGTCGTGGCTGGTGTT 59.971 61.111 3.82 0.00 0.00 3.32
4287 7364 3.224324 ACGAGTCGTGGCTGGTGT 61.224 61.111 19.16 0.00 39.18 4.16
4296 7373 1.242665 GGACTTCTCCCACGAGTCGT 61.243 60.000 13.56 13.56 40.47 4.34
4297 7374 1.507174 GGACTTCTCCCACGAGTCG 59.493 63.158 11.85 11.85 40.47 4.18
4306 7383 3.327626 GAAAGAAACGAGGGACTTCTCC 58.672 50.000 0.00 0.00 41.55 3.71
4307 7384 2.987821 CGAAAGAAACGAGGGACTTCTC 59.012 50.000 0.00 0.00 41.55 2.87
4308 7385 2.866855 GCGAAAGAAACGAGGGACTTCT 60.867 50.000 0.00 0.00 41.55 2.85
4309 7386 1.459975 GCGAAAGAAACGAGGGACTTC 59.540 52.381 0.00 0.00 41.55 3.01
4310 7387 1.070289 AGCGAAAGAAACGAGGGACTT 59.930 47.619 0.00 0.00 41.55 3.01
4312 7389 1.069255 GAGCGAAAGAAACGAGGGAC 58.931 55.000 0.00 0.00 0.00 4.46
4313 7390 0.037605 GGAGCGAAAGAAACGAGGGA 60.038 55.000 0.00 0.00 0.00 4.20
4314 7391 1.019805 GGGAGCGAAAGAAACGAGGG 61.020 60.000 0.00 0.00 0.00 4.30
4315 7392 0.037232 AGGGAGCGAAAGAAACGAGG 60.037 55.000 0.00 0.00 0.00 4.63
4316 7393 1.067495 AGAGGGAGCGAAAGAAACGAG 60.067 52.381 0.00 0.00 0.00 4.18
4317 7394 0.966920 AGAGGGAGCGAAAGAAACGA 59.033 50.000 0.00 0.00 0.00 3.85
4318 7395 2.649331 TAGAGGGAGCGAAAGAAACG 57.351 50.000 0.00 0.00 0.00 3.60
4319 7396 3.552294 CGAATAGAGGGAGCGAAAGAAAC 59.448 47.826 0.00 0.00 0.00 2.78
4320 7397 3.782046 CGAATAGAGGGAGCGAAAGAAA 58.218 45.455 0.00 0.00 0.00 2.52
4321 7398 2.481449 GCGAATAGAGGGAGCGAAAGAA 60.481 50.000 0.00 0.00 0.00 2.52
4322 7399 1.067212 GCGAATAGAGGGAGCGAAAGA 59.933 52.381 0.00 0.00 0.00 2.52
4323 7400 1.202417 TGCGAATAGAGGGAGCGAAAG 60.202 52.381 0.00 0.00 0.00 2.62
4324 7401 0.821517 TGCGAATAGAGGGAGCGAAA 59.178 50.000 0.00 0.00 0.00 3.46
4325 7402 0.385751 CTGCGAATAGAGGGAGCGAA 59.614 55.000 0.00 0.00 0.00 4.70
4326 7403 2.033793 CTGCGAATAGAGGGAGCGA 58.966 57.895 0.00 0.00 0.00 4.93
4327 7404 1.663074 GCTGCGAATAGAGGGAGCG 60.663 63.158 0.00 0.00 37.85 5.03
4328 7405 0.962489 TAGCTGCGAATAGAGGGAGC 59.038 55.000 0.00 0.00 46.49 4.70
4329 7406 3.951775 AATAGCTGCGAATAGAGGGAG 57.048 47.619 0.00 0.00 0.00 4.30
4330 7407 4.689612 AAAATAGCTGCGAATAGAGGGA 57.310 40.909 0.00 0.00 0.00 4.20
4405 7482 8.917655 CCGACGGTGTATTATTTTTGAAATTTT 58.082 29.630 5.48 0.00 0.00 1.82
4406 7483 7.062488 GCCGACGGTGTATTATTTTTGAAATTT 59.938 33.333 16.73 0.00 0.00 1.82
4407 7484 6.528774 GCCGACGGTGTATTATTTTTGAAATT 59.471 34.615 16.73 0.00 0.00 1.82
4408 7485 6.031471 GCCGACGGTGTATTATTTTTGAAAT 58.969 36.000 16.73 0.00 0.00 2.17
4409 7486 5.392286 GCCGACGGTGTATTATTTTTGAAA 58.608 37.500 16.73 0.00 0.00 2.69
4410 7487 4.142643 GGCCGACGGTGTATTATTTTTGAA 60.143 41.667 16.73 0.00 0.00 2.69
4411 7488 3.374678 GGCCGACGGTGTATTATTTTTGA 59.625 43.478 16.73 0.00 0.00 2.69
4412 7489 3.487879 GGGCCGACGGTGTATTATTTTTG 60.488 47.826 16.73 0.00 0.00 2.44
4413 7490 2.684374 GGGCCGACGGTGTATTATTTTT 59.316 45.455 16.73 0.00 0.00 1.94
4414 7491 2.291365 GGGCCGACGGTGTATTATTTT 58.709 47.619 16.73 0.00 0.00 1.82
4415 7492 1.807377 CGGGCCGACGGTGTATTATTT 60.807 52.381 24.41 0.00 0.00 1.40
4416 7493 0.249573 CGGGCCGACGGTGTATTATT 60.250 55.000 24.41 0.00 0.00 1.40
4417 7494 1.364901 CGGGCCGACGGTGTATTAT 59.635 57.895 24.41 0.00 0.00 1.28
4418 7495 2.806929 CGGGCCGACGGTGTATTA 59.193 61.111 24.41 0.00 0.00 0.98
4419 7496 4.825252 GCGGGCCGACGGTGTATT 62.825 66.667 33.44 0.00 0.00 1.89
4442 7519 2.496817 CGACTAGGCCCAGTCAGC 59.503 66.667 27.63 5.36 44.34 4.26
4443 7520 3.211288 CCGACTAGGCCCAGTCAG 58.789 66.667 27.63 19.91 44.34 3.51
4452 7529 3.376935 CTGCTGTGGGCCGACTAGG 62.377 68.421 19.42 10.07 44.97 3.02
4453 7530 2.185350 CTGCTGTGGGCCGACTAG 59.815 66.667 19.42 14.72 40.92 2.57
4454 7531 3.390521 CCTGCTGTGGGCCGACTA 61.391 66.667 19.42 4.76 40.92 2.59
4461 7538 2.652095 CCAATTGGCCTGCTGTGGG 61.652 63.158 12.53 0.00 0.00 4.61
4462 7539 0.974010 ATCCAATTGGCCTGCTGTGG 60.974 55.000 20.33 4.70 34.44 4.17
4463 7540 0.899720 AATCCAATTGGCCTGCTGTG 59.100 50.000 20.33 0.00 34.44 3.66
4464 7541 1.188863 GAATCCAATTGGCCTGCTGT 58.811 50.000 20.33 0.00 34.44 4.40
4465 7542 0.462789 GGAATCCAATTGGCCTGCTG 59.537 55.000 20.33 0.00 34.44 4.41
4466 7543 0.041535 TGGAATCCAATTGGCCTGCT 59.958 50.000 20.33 1.56 34.44 4.24
4467 7544 0.462789 CTGGAATCCAATTGGCCTGC 59.537 55.000 20.33 13.95 30.80 4.85
4468 7545 1.753073 GACTGGAATCCAATTGGCCTG 59.247 52.381 20.33 19.34 30.80 4.85
4469 7546 1.683011 CGACTGGAATCCAATTGGCCT 60.683 52.381 20.33 8.74 30.80 5.19
4470 7547 0.740737 CGACTGGAATCCAATTGGCC 59.259 55.000 20.33 15.43 30.80 5.36
4471 7548 0.740737 CCGACTGGAATCCAATTGGC 59.259 55.000 20.33 6.24 37.49 4.52
4472 7549 0.740737 GCCGACTGGAATCCAATTGG 59.259 55.000 19.08 19.08 37.36 3.16
4473 7550 0.740737 GGCCGACTGGAATCCAATTG 59.259 55.000 2.61 0.00 37.49 2.32
4474 7551 0.625849 AGGCCGACTGGAATCCAATT 59.374 50.000 2.61 0.00 37.49 2.32
4475 7552 1.141053 GTAGGCCGACTGGAATCCAAT 59.859 52.381 9.01 0.00 37.49 3.16
4476 7553 0.539986 GTAGGCCGACTGGAATCCAA 59.460 55.000 9.01 0.00 37.49 3.53
4477 7554 0.616395 TGTAGGCCGACTGGAATCCA 60.616 55.000 17.46 0.48 37.49 3.41
4478 7555 0.105039 CTGTAGGCCGACTGGAATCC 59.895 60.000 17.46 0.00 37.49 3.01
4479 7556 0.530870 GCTGTAGGCCGACTGGAATC 60.531 60.000 21.31 4.20 37.49 2.52
4480 7557 0.978146 AGCTGTAGGCCGACTGGAAT 60.978 55.000 21.31 4.18 43.05 3.01
4481 7558 1.609501 AGCTGTAGGCCGACTGGAA 60.610 57.895 21.31 0.00 43.05 3.53
4482 7559 2.037367 AGCTGTAGGCCGACTGGA 59.963 61.111 21.31 0.01 43.05 3.86
4483 7560 2.185350 CAGCTGTAGGCCGACTGG 59.815 66.667 21.31 13.30 43.05 4.00
4484 7561 2.185350 CCAGCTGTAGGCCGACTG 59.815 66.667 17.46 17.16 43.05 3.51
4485 7562 3.775654 GCCAGCTGTAGGCCGACT 61.776 66.667 17.46 0.00 46.50 4.18
4491 7568 2.185350 CAGTCGGCCAGCTGTAGG 59.815 66.667 13.81 0.00 0.00 3.18
4492 7569 2.185350 CCAGTCGGCCAGCTGTAG 59.815 66.667 13.81 3.41 0.00 2.74
4511 7588 4.704833 CACAGTGGGCCGACAGGG 62.705 72.222 20.91 9.69 38.20 4.45
4512 7589 4.704833 CCACAGTGGGCCGACAGG 62.705 72.222 20.91 14.33 41.62 4.00
4521 7598 2.693762 CGCAATCAGCCCACAGTGG 61.694 63.158 13.35 13.35 41.38 4.00
4522 7599 1.915614 GACGCAATCAGCCCACAGTG 61.916 60.000 0.00 0.00 41.38 3.66
4523 7600 1.672356 GACGCAATCAGCCCACAGT 60.672 57.895 0.00 0.00 41.38 3.55
4524 7601 1.376424 AGACGCAATCAGCCCACAG 60.376 57.895 0.00 0.00 41.38 3.66
4525 7602 1.672030 CAGACGCAATCAGCCCACA 60.672 57.895 0.00 0.00 41.38 4.17
4526 7603 0.955428 TTCAGACGCAATCAGCCCAC 60.955 55.000 0.00 0.00 41.38 4.61
4527 7604 0.955428 GTTCAGACGCAATCAGCCCA 60.955 55.000 0.00 0.00 41.38 5.36
4528 7605 1.648467 GGTTCAGACGCAATCAGCCC 61.648 60.000 0.00 0.00 41.38 5.19
4529 7606 0.674895 AGGTTCAGACGCAATCAGCC 60.675 55.000 0.00 0.00 41.38 4.85
4530 7607 2.010145 TAGGTTCAGACGCAATCAGC 57.990 50.000 0.00 0.00 40.87 4.26
4531 7608 4.201851 CCAATTAGGTTCAGACGCAATCAG 60.202 45.833 0.00 0.00 0.00 2.90
4532 7609 3.689161 CCAATTAGGTTCAGACGCAATCA 59.311 43.478 0.00 0.00 0.00 2.57
4533 7610 3.487544 GCCAATTAGGTTCAGACGCAATC 60.488 47.826 0.00 0.00 40.61 2.67
4534 7611 2.423538 GCCAATTAGGTTCAGACGCAAT 59.576 45.455 0.00 0.00 40.61 3.56
4535 7612 1.810151 GCCAATTAGGTTCAGACGCAA 59.190 47.619 0.00 0.00 40.61 4.85
4536 7613 1.003118 AGCCAATTAGGTTCAGACGCA 59.997 47.619 0.00 0.00 40.61 5.24
4537 7614 1.666189 GAGCCAATTAGGTTCAGACGC 59.334 52.381 6.09 0.00 46.12 5.19
4543 7620 1.398390 CACAGCGAGCCAATTAGGTTC 59.602 52.381 0.00 0.00 43.64 3.62
4544 7621 1.453155 CACAGCGAGCCAATTAGGTT 58.547 50.000 0.00 0.00 40.61 3.50
4545 7622 0.392998 CCACAGCGAGCCAATTAGGT 60.393 55.000 0.00 0.00 40.61 3.08
4546 7623 1.097547 CCCACAGCGAGCCAATTAGG 61.098 60.000 0.00 0.00 41.84 2.69
4547 7624 1.718757 GCCCACAGCGAGCCAATTAG 61.719 60.000 0.00 0.00 0.00 1.73
4548 7625 1.748879 GCCCACAGCGAGCCAATTA 60.749 57.895 0.00 0.00 0.00 1.40
4549 7626 3.064324 GCCCACAGCGAGCCAATT 61.064 61.111 0.00 0.00 0.00 2.32
4558 7635 2.068519 GCAAAACAATTAGCCCACAGC 58.931 47.619 0.00 0.00 44.25 4.40
4559 7636 3.383620 TGCAAAACAATTAGCCCACAG 57.616 42.857 0.00 0.00 0.00 3.66
4560 7637 3.827008 TTGCAAAACAATTAGCCCACA 57.173 38.095 0.00 0.00 31.73 4.17
4561 7638 5.491635 TTTTTGCAAAACAATTAGCCCAC 57.508 34.783 23.79 0.00 38.31 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.