Multiple sequence alignment - TraesCS7D01G351400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G351400 chr7D 100.000 2888 0 0 1 2888 452152857 452155744 0.000000e+00 5334.0
1 TraesCS7D01G351400 chr7D 84.921 126 18 1 2651 2775 311863390 311863515 3.020000e-25 126.0
2 TraesCS7D01G351400 chr7D 80.952 147 21 6 1 145 436499079 436498938 3.040000e-20 110.0
3 TraesCS7D01G351400 chr7B 94.915 2930 89 24 1 2888 474641935 474644846 0.000000e+00 4530.0
4 TraesCS7D01G351400 chr7B 84.685 111 12 2 1 111 329084964 329085069 3.940000e-19 106.0
5 TraesCS7D01G351400 chr7A 89.793 1352 77 26 497 1796 545474693 545473351 0.000000e+00 1676.0
6 TraesCS7D01G351400 chr7A 90.717 711 33 15 1828 2515 545473352 545472652 0.000000e+00 917.0
7 TraesCS7D01G351400 chr7A 90.741 54 4 1 2668 2720 375898100 375898047 1.440000e-08 71.3
8 TraesCS7D01G351400 chr5A 86.713 143 17 2 1 142 11230489 11230630 1.070000e-34 158.0
9 TraesCS7D01G351400 chr5A 84.483 116 13 4 1 113 642695427 642695540 3.040000e-20 110.0
10 TraesCS7D01G351400 chr1D 87.736 106 12 1 21 126 253201769 253201665 3.910000e-24 122.0
11 TraesCS7D01G351400 chr1D 81.884 138 24 1 1 138 423862041 423861905 6.540000e-22 115.0
12 TraesCS7D01G351400 chr1B 85.124 121 16 2 21 141 359206838 359206956 3.910000e-24 122.0
13 TraesCS7D01G351400 chr2D 82.812 128 18 4 2650 2775 645286767 645286892 8.460000e-21 111.0
14 TraesCS7D01G351400 chr4D 83.478 115 15 3 2777 2887 468261214 468261328 1.420000e-18 104.0
15 TraesCS7D01G351400 chr1A 79.720 143 28 1 1 143 520343658 520343517 5.090000e-18 102.0
16 TraesCS7D01G351400 chr6B 83.654 104 17 0 2652 2755 503606576 503606473 6.590000e-17 99.0
17 TraesCS7D01G351400 chr6A 85.366 82 10 2 2687 2767 603605386 603605466 1.840000e-12 84.2
18 TraesCS7D01G351400 chr6A 96.875 32 0 1 2846 2876 414883097 414883066 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G351400 chr7D 452152857 452155744 2887 False 5334.0 5334 100.000 1 2888 1 chr7D.!!$F2 2887
1 TraesCS7D01G351400 chr7B 474641935 474644846 2911 False 4530.0 4530 94.915 1 2888 1 chr7B.!!$F2 2887
2 TraesCS7D01G351400 chr7A 545472652 545474693 2041 True 1296.5 1676 90.255 497 2515 2 chr7A.!!$R2 2018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 708 2.164219 CACCCACCAAGACATGCATTAC 59.836 50.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2212 0.033601 TTGCCCACAACCACAAGACT 60.034 50.0 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 3.397849 AAAAACGACCAGAGGGAGTAC 57.602 47.619 0.00 0.00 38.05 2.73
196 197 5.705609 ACTATGCATTTGAAAAGTTCCGT 57.294 34.783 3.54 0.00 0.00 4.69
227 231 5.508200 TGCGGATTTGTACTTTGTTCTTT 57.492 34.783 0.00 0.00 0.00 2.52
298 311 7.225931 TGTGCAAAGAACTAGTAAACGAGAATT 59.774 33.333 0.00 0.00 0.00 2.17
332 345 6.774354 AATGCATGTTCATTGAGTTTGTTC 57.226 33.333 0.00 0.00 35.52 3.18
336 349 6.183360 TGCATGTTCATTGAGTTTGTTCTCTT 60.183 34.615 0.00 0.00 35.68 2.85
343 356 7.587629 TCATTGAGTTTGTTCTCTTTGCATAG 58.412 34.615 0.00 0.00 35.68 2.23
419 432 5.787953 TTGACATGTGTGGATGATTTGTT 57.212 34.783 1.15 0.00 0.00 2.83
425 438 7.725251 ACATGTGTGGATGATTTGTTAACTTT 58.275 30.769 7.22 0.00 0.00 2.66
461 474 6.348868 GGCAAATGTTTATCTATGCTAGGAGC 60.349 42.308 0.00 0.00 42.82 4.70
467 480 2.203437 TATGCTAGGAGCCGGCGA 60.203 61.111 23.20 7.02 41.51 5.54
524 537 6.187682 TCTTTTATTCACTGGATTCCCTTCC 58.812 40.000 0.00 0.00 36.24 3.46
662 708 2.164219 CACCCACCAAGACATGCATTAC 59.836 50.000 0.00 0.00 0.00 1.89
665 711 3.084039 CCACCAAGACATGCATTACACT 58.916 45.455 0.00 0.00 0.00 3.55
666 712 3.127548 CCACCAAGACATGCATTACACTC 59.872 47.826 0.00 0.00 0.00 3.51
667 713 3.752747 CACCAAGACATGCATTACACTCA 59.247 43.478 0.00 0.00 0.00 3.41
682 728 9.065871 GCATTACACTCATACACAAAGAAAATC 57.934 33.333 0.00 0.00 0.00 2.17
759 812 5.588648 TGGAAAACGAAGAGTGAAGAAACAT 59.411 36.000 0.00 0.00 0.00 2.71
1261 1337 2.538512 GGTTTCTGACCTGGTACGTT 57.461 50.000 0.00 0.00 45.55 3.99
1456 1532 3.853330 CTCCACGGCATGTTCGCG 61.853 66.667 0.00 0.00 0.00 5.87
1793 1902 5.521735 CCTACAACTACAATCAGCATCTGAC 59.478 44.000 0.00 0.00 43.63 3.51
1794 1903 4.898320 ACAACTACAATCAGCATCTGACA 58.102 39.130 0.00 0.00 43.63 3.58
1795 1904 5.308014 ACAACTACAATCAGCATCTGACAA 58.692 37.500 0.00 0.00 43.63 3.18
1796 1905 5.764686 ACAACTACAATCAGCATCTGACAAA 59.235 36.000 0.00 0.00 43.63 2.83
1797 1906 6.432162 ACAACTACAATCAGCATCTGACAAAT 59.568 34.615 0.00 0.00 43.63 2.32
1798 1907 6.432607 ACTACAATCAGCATCTGACAAATG 57.567 37.500 0.00 0.26 43.63 2.32
1799 1908 6.175471 ACTACAATCAGCATCTGACAAATGA 58.825 36.000 0.00 0.00 43.63 2.57
1800 1909 5.970317 ACAATCAGCATCTGACAAATGAA 57.030 34.783 0.00 0.00 43.63 2.57
1801 1910 5.950883 ACAATCAGCATCTGACAAATGAAG 58.049 37.500 0.00 0.00 43.63 3.02
1802 1911 5.708697 ACAATCAGCATCTGACAAATGAAGA 59.291 36.000 0.00 0.00 43.63 2.87
1803 1912 6.377429 ACAATCAGCATCTGACAAATGAAGAT 59.623 34.615 0.00 0.00 43.63 2.40
1804 1913 5.813080 TCAGCATCTGACAAATGAAGATG 57.187 39.130 18.26 18.26 46.60 2.90
1805 1914 5.493809 TCAGCATCTGACAAATGAAGATGA 58.506 37.500 22.95 9.80 46.74 2.92
1806 1915 5.941647 TCAGCATCTGACAAATGAAGATGAA 59.058 36.000 22.95 11.90 46.74 2.57
1807 1916 6.028368 CAGCATCTGACAAATGAAGATGAAC 58.972 40.000 22.95 12.95 46.74 3.18
1808 1917 5.708697 AGCATCTGACAAATGAAGATGAACA 59.291 36.000 22.95 0.00 46.74 3.18
1809 1918 5.798934 GCATCTGACAAATGAAGATGAACAC 59.201 40.000 22.95 10.20 46.74 3.32
1810 1919 5.596268 TCTGACAAATGAAGATGAACACG 57.404 39.130 0.00 0.00 0.00 4.49
1811 1920 4.083855 TCTGACAAATGAAGATGAACACGC 60.084 41.667 0.00 0.00 0.00 5.34
1812 1921 3.563390 TGACAAATGAAGATGAACACGCA 59.437 39.130 0.00 0.00 0.00 5.24
1813 1922 3.888934 ACAAATGAAGATGAACACGCAC 58.111 40.909 0.00 0.00 0.00 5.34
1814 1923 3.314913 ACAAATGAAGATGAACACGCACA 59.685 39.130 0.00 0.00 0.00 4.57
1815 1924 4.202000 ACAAATGAAGATGAACACGCACAA 60.202 37.500 0.00 0.00 0.00 3.33
1816 1925 4.566545 AATGAAGATGAACACGCACAAA 57.433 36.364 0.00 0.00 0.00 2.83
1817 1926 3.332761 TGAAGATGAACACGCACAAAC 57.667 42.857 0.00 0.00 0.00 2.93
1818 1927 2.680339 TGAAGATGAACACGCACAAACA 59.320 40.909 0.00 0.00 0.00 2.83
1819 1928 2.755836 AGATGAACACGCACAAACAC 57.244 45.000 0.00 0.00 0.00 3.32
1820 1929 2.013400 AGATGAACACGCACAAACACA 58.987 42.857 0.00 0.00 0.00 3.72
1821 1930 2.618241 AGATGAACACGCACAAACACAT 59.382 40.909 0.00 0.00 0.00 3.21
1822 1931 2.466870 TGAACACGCACAAACACATC 57.533 45.000 0.00 0.00 0.00 3.06
1823 1932 1.267782 TGAACACGCACAAACACATCG 60.268 47.619 0.00 0.00 0.00 3.84
1824 1933 0.730265 AACACGCACAAACACATCGT 59.270 45.000 0.00 0.00 0.00 3.73
1825 1934 1.573026 ACACGCACAAACACATCGTA 58.427 45.000 0.00 0.00 0.00 3.43
1826 1935 1.259507 ACACGCACAAACACATCGTAC 59.740 47.619 0.00 0.00 0.00 3.67
1885 2000 1.558756 CAGCTCCAAGACCATCTTCCT 59.441 52.381 0.00 0.00 33.78 3.36
2095 2212 0.531090 GTTGCCACAGGTCACGTACA 60.531 55.000 0.00 0.00 0.00 2.90
2097 2214 1.366366 GCCACAGGTCACGTACAGT 59.634 57.895 0.00 0.00 0.00 3.55
2202 2320 5.466819 CACTGTAAGGTCACGAGATTTACA 58.533 41.667 16.14 16.14 39.30 2.41
2332 2457 3.028130 TGTTCTTTTGGTTGGGAACTCC 58.972 45.455 0.00 0.00 38.86 3.85
2348 2473 0.107831 CTCCGGTCTTGTTTGGGTCA 59.892 55.000 0.00 0.00 0.00 4.02
2370 2495 2.025605 ACAGATGGTGATTGCTGTGGAT 60.026 45.455 0.00 0.00 39.88 3.41
2472 2602 1.352083 AAGGTCCAGTTGCTCTGCTA 58.648 50.000 0.00 0.00 42.38 3.49
2556 2686 4.321974 CCCTCAACCTAAAATCTTGGCAAC 60.322 45.833 0.00 0.00 0.00 4.17
2613 2743 9.521503 GAAGAAAATTAGATTTATGCAACTCCC 57.478 33.333 0.00 0.00 0.00 4.30
2664 2794 2.934886 AACCATTGCAAAGTGGCATT 57.065 40.000 17.27 4.42 44.48 3.56
2682 2812 0.112995 TTGGTTGCTGCCAAGAGGAT 59.887 50.000 8.18 0.00 42.98 3.24
2684 2814 1.372087 GGTTGCTGCCAAGAGGATCG 61.372 60.000 0.00 0.00 42.67 3.69
2745 2875 4.720649 TCATCAGCAAGGTAGTACTCAC 57.279 45.455 0.00 0.00 0.00 3.51
2767 2897 2.931325 TGTTGTAGTTGTGTCCGTTGAC 59.069 45.455 0.00 0.00 42.12 3.18
2808 2938 1.130561 CGTGTGTCAGCGAGTCTATCA 59.869 52.381 0.00 0.00 0.00 2.15
2812 2942 0.733729 GTCAGCGAGTCTATCACGGT 59.266 55.000 0.00 0.00 40.92 4.83
2826 2956 1.897802 TCACGGTTTAGAACTCCTCCC 59.102 52.381 0.00 0.00 0.00 4.30
2835 2965 6.183360 GGTTTAGAACTCCTCCCTTAGATCAG 60.183 46.154 0.00 0.00 0.00 2.90
2855 2985 3.087031 AGCCCTTGATGTTCAGAATGTG 58.913 45.455 0.00 0.00 37.40 3.21
2877 3007 2.843113 CTCCACTTCCCTCTCCATTTCT 59.157 50.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.283768 TCAATATCATTAGCGGTGTCATAAATT 57.716 29.630 0.00 0.00 0.00 1.82
16 17 8.443160 CAATACGAAATCAATATCATTAGCGGT 58.557 33.333 0.00 0.00 0.00 5.68
119 120 4.381292 CGTACTCCCTCTGGTCGTTTTTAT 60.381 45.833 0.00 0.00 0.00 1.40
126 127 1.132643 CTTTCGTACTCCCTCTGGTCG 59.867 57.143 0.00 0.00 0.00 4.79
222 226 4.756642 ACTGCATGTGATCGAAGAAAAGAA 59.243 37.500 0.00 0.00 43.58 2.52
227 231 3.433274 GTGAACTGCATGTGATCGAAGAA 59.567 43.478 0.00 0.00 43.58 2.52
271 284 5.461078 TCTCGTTTACTAGTTCTTTGCACAC 59.539 40.000 0.00 0.00 0.00 3.82
298 311 7.656542 TCAATGAACATGCATTTTTAGCTTTGA 59.343 29.630 0.00 3.60 36.39 2.69
332 345 2.715046 TCTTGTGGCCTATGCAAAGAG 58.285 47.619 3.32 0.00 40.13 2.85
336 349 3.961849 TGTATTCTTGTGGCCTATGCAA 58.038 40.909 3.32 3.41 40.13 4.08
343 356 5.905480 CAAAGTTTTGTATTCTTGTGGCC 57.095 39.130 0.00 0.00 33.59 5.36
399 412 6.913170 AGTTAACAAATCATCCACACATGTC 58.087 36.000 8.61 0.00 0.00 3.06
419 432 5.713792 TTTGCCATCATTTCGGAAAGTTA 57.286 34.783 9.30 0.00 0.00 2.24
425 438 4.533919 AAACATTTGCCATCATTTCGGA 57.466 36.364 0.00 0.00 0.00 4.55
467 480 0.460311 CTAGCAAACGAGTCCGGGAT 59.540 55.000 0.00 0.00 40.78 3.85
524 537 5.950758 ATACCTCATTCGAGTAGTAGCAG 57.049 43.478 0.00 0.00 37.59 4.24
662 708 7.484007 GCTCATGATTTTCTTTGTGTATGAGTG 59.516 37.037 0.00 0.00 41.24 3.51
665 711 7.451501 TGCTCATGATTTTCTTTGTGTATGA 57.548 32.000 0.00 0.00 0.00 2.15
666 712 8.188799 AGATGCTCATGATTTTCTTTGTGTATG 58.811 33.333 0.00 0.00 0.00 2.39
667 713 8.289939 AGATGCTCATGATTTTCTTTGTGTAT 57.710 30.769 0.00 0.00 0.00 2.29
682 728 7.783090 ATTATTATTCGGCTAGATGCTCATG 57.217 36.000 0.00 0.00 42.39 3.07
722 768 5.054390 TCGTTTTCCATAGGATTTTGCAC 57.946 39.130 0.00 0.00 0.00 4.57
730 776 5.245301 TCTTCACTCTTCGTTTTCCATAGGA 59.755 40.000 0.00 0.00 0.00 2.94
731 777 5.479306 TCTTCACTCTTCGTTTTCCATAGG 58.521 41.667 0.00 0.00 0.00 2.57
759 812 4.254709 ACCTGCTGCCGACTTGCA 62.255 61.111 0.00 0.00 39.37 4.08
825 878 0.473501 ATGAGGAGGAGGAGGATGGC 60.474 60.000 0.00 0.00 0.00 4.40
1199 1275 5.984695 TGTATATACATGACCAGCTCCTC 57.015 43.478 11.62 0.00 0.00 3.71
1200 1276 7.185565 ACTATGTATATACATGACCAGCTCCT 58.814 38.462 30.35 9.75 45.77 3.69
1201 1277 7.340743 AGACTATGTATATACATGACCAGCTCC 59.659 40.741 30.35 15.75 45.77 4.70
1257 1333 3.057526 TCTGTCAGTCAATCATCGAACGT 60.058 43.478 0.00 0.00 0.00 3.99
1261 1337 2.478539 CGCTCTGTCAGTCAATCATCGA 60.479 50.000 0.00 0.00 0.00 3.59
1793 1902 3.887741 TGTGCGTGTTCATCTTCATTTG 58.112 40.909 0.00 0.00 0.00 2.32
1794 1903 4.566545 TTGTGCGTGTTCATCTTCATTT 57.433 36.364 0.00 0.00 0.00 2.32
1795 1904 4.202000 TGTTTGTGCGTGTTCATCTTCATT 60.202 37.500 0.00 0.00 0.00 2.57
1796 1905 3.314913 TGTTTGTGCGTGTTCATCTTCAT 59.685 39.130 0.00 0.00 0.00 2.57
1797 1906 2.680339 TGTTTGTGCGTGTTCATCTTCA 59.320 40.909 0.00 0.00 0.00 3.02
1798 1907 3.035942 GTGTTTGTGCGTGTTCATCTTC 58.964 45.455 0.00 0.00 0.00 2.87
1799 1908 2.421775 TGTGTTTGTGCGTGTTCATCTT 59.578 40.909 0.00 0.00 0.00 2.40
1800 1909 2.013400 TGTGTTTGTGCGTGTTCATCT 58.987 42.857 0.00 0.00 0.00 2.90
1801 1910 2.466870 TGTGTTTGTGCGTGTTCATC 57.533 45.000 0.00 0.00 0.00 2.92
1802 1911 2.601979 CGATGTGTTTGTGCGTGTTCAT 60.602 45.455 0.00 0.00 0.00 2.57
1803 1912 1.267782 CGATGTGTTTGTGCGTGTTCA 60.268 47.619 0.00 0.00 0.00 3.18
1804 1913 1.267832 ACGATGTGTTTGTGCGTGTTC 60.268 47.619 0.00 0.00 33.52 3.18
1805 1914 0.730265 ACGATGTGTTTGTGCGTGTT 59.270 45.000 0.00 0.00 33.52 3.32
1806 1915 1.259507 GTACGATGTGTTTGTGCGTGT 59.740 47.619 0.00 0.00 36.51 4.49
1807 1916 1.259244 TGTACGATGTGTTTGTGCGTG 59.741 47.619 0.00 0.00 36.51 5.34
1808 1917 1.573026 TGTACGATGTGTTTGTGCGT 58.427 45.000 0.00 0.00 38.81 5.24
1809 1918 2.033236 ACTTGTACGATGTGTTTGTGCG 60.033 45.455 0.00 0.00 0.00 5.34
1810 1919 3.602390 ACTTGTACGATGTGTTTGTGC 57.398 42.857 0.00 0.00 0.00 4.57
1811 1920 4.508492 TGGTACTTGTACGATGTGTTTGTG 59.492 41.667 5.04 0.00 0.00 3.33
1812 1921 4.695396 TGGTACTTGTACGATGTGTTTGT 58.305 39.130 5.04 0.00 0.00 2.83
1813 1922 5.235616 ACTTGGTACTTGTACGATGTGTTTG 59.764 40.000 11.47 0.00 0.00 2.93
1814 1923 5.362263 ACTTGGTACTTGTACGATGTGTTT 58.638 37.500 11.47 0.00 0.00 2.83
1815 1924 4.952460 ACTTGGTACTTGTACGATGTGTT 58.048 39.130 11.47 0.00 0.00 3.32
1816 1925 4.595762 ACTTGGTACTTGTACGATGTGT 57.404 40.909 11.47 3.70 0.00 3.72
1817 1926 6.154445 AGTAACTTGGTACTTGTACGATGTG 58.846 40.000 12.47 3.79 29.76 3.21
1818 1927 6.336842 AGTAACTTGGTACTTGTACGATGT 57.663 37.500 8.04 8.04 29.76 3.06
1819 1928 7.007725 CGTTAGTAACTTGGTACTTGTACGATG 59.992 40.741 11.17 6.18 35.95 3.84
1820 1929 7.023575 CGTTAGTAACTTGGTACTTGTACGAT 58.976 38.462 11.17 0.00 35.95 3.73
1821 1930 6.017440 ACGTTAGTAACTTGGTACTTGTACGA 60.017 38.462 22.15 0.00 36.60 3.43
1822 1931 6.142817 ACGTTAGTAACTTGGTACTTGTACG 58.857 40.000 11.17 17.64 37.73 3.67
1823 1932 7.363431 AGACGTTAGTAACTTGGTACTTGTAC 58.637 38.462 11.17 2.55 35.85 2.90
1824 1933 7.445402 AGAGACGTTAGTAACTTGGTACTTGTA 59.555 37.037 11.17 0.00 35.85 2.41
1825 1934 6.264067 AGAGACGTTAGTAACTTGGTACTTGT 59.736 38.462 11.17 1.52 35.85 3.16
1826 1935 6.675987 AGAGACGTTAGTAACTTGGTACTTG 58.324 40.000 11.17 0.00 35.85 3.16
1885 2000 0.908910 ACCGTGCCTGGTGATCATTA 59.091 50.000 0.00 0.00 41.85 1.90
2095 2212 0.033601 TTGCCCACAACCACAAGACT 60.034 50.000 0.00 0.00 0.00 3.24
2097 2214 0.754957 CCTTGCCCACAACCACAAGA 60.755 55.000 3.29 0.00 41.59 3.02
2202 2320 8.997323 CAGAAAGAAATGACAGAGATTGTACTT 58.003 33.333 0.00 0.00 41.05 2.24
2332 2457 1.333619 CTGTTGACCCAAACAAGACCG 59.666 52.381 0.00 0.00 39.47 4.79
2348 2473 2.165167 CCACAGCAATCACCATCTGTT 58.835 47.619 0.00 0.00 37.66 3.16
2370 2495 0.618458 GATTCCCACTGCCACTGGTA 59.382 55.000 0.00 0.00 0.00 3.25
2472 2602 3.605664 GGCACCTGGCGCAAGTTT 61.606 61.111 11.70 0.00 46.16 2.66
2603 2733 6.014327 ACAAAATATGAACTTGGGAGTTGCAT 60.014 34.615 0.00 3.81 45.88 3.96
2664 2794 0.322816 GATCCTCTTGGCAGCAACCA 60.323 55.000 0.00 0.00 38.16 3.67
2666 2796 0.391661 TCGATCCTCTTGGCAGCAAC 60.392 55.000 0.00 0.00 0.00 4.17
2682 2812 3.369756 GCGTTTGTGAAGACCATATTCGA 59.630 43.478 0.00 0.00 0.00 3.71
2684 2814 3.485216 CGGCGTTTGTGAAGACCATATTC 60.485 47.826 0.00 0.00 0.00 1.75
2745 2875 3.000925 GTCAACGGACACAACTACAACAG 59.999 47.826 0.00 0.00 43.73 3.16
2794 2924 1.460504 AACCGTGATAGACTCGCTGA 58.539 50.000 0.00 0.00 34.71 4.26
2808 2938 2.322339 AGGGAGGAGTTCTAAACCGT 57.678 50.000 0.00 0.00 0.00 4.83
2812 2942 5.364157 GCTGATCTAAGGGAGGAGTTCTAAA 59.636 44.000 0.00 0.00 0.00 1.85
2826 2956 4.774124 TGAACATCAAGGGCTGATCTAAG 58.226 43.478 0.00 0.00 43.28 2.18
2835 2965 2.416431 GCACATTCTGAACATCAAGGGC 60.416 50.000 0.00 0.00 0.00 5.19
2855 2985 0.915364 AATGGAGAGGGAAGTGGAGC 59.085 55.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.