Multiple sequence alignment - TraesCS7D01G351300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G351300 chr7D 100.000 2864 0 0 1 2864 452141894 452139031 0.000000e+00 5289.0
1 TraesCS7D01G351300 chr7D 93.686 491 16 4 2154 2630 378711895 378711406 0.000000e+00 721.0
2 TraesCS7D01G351300 chr7D 98.649 370 5 0 2495 2864 378711480 378711111 0.000000e+00 656.0
3 TraesCS7D01G351300 chr7D 98.785 247 3 0 2556 2802 598520928 598520682 9.420000e-120 440.0
4 TraesCS7D01G351300 chr7D 92.578 256 5 3 2153 2395 598521220 598520966 3.510000e-94 355.0
5 TraesCS7D01G351300 chr7D 97.927 193 3 1 2153 2345 238138122 238138313 1.640000e-87 333.0
6 TraesCS7D01G351300 chr7D 97.354 189 5 0 2153 2341 378710613 378710801 3.560000e-84 322.0
7 TraesCS7D01G351300 chr7D 81.818 352 54 9 2154 2500 514125890 514125544 1.300000e-73 287.0
8 TraesCS7D01G351300 chr7D 90.960 177 13 3 2326 2500 18008552 18008727 4.770000e-58 235.0
9 TraesCS7D01G351300 chr7D 90.960 177 13 3 2326 2500 64017383 64017208 4.770000e-58 235.0
10 TraesCS7D01G351300 chr7D 95.683 139 6 0 2431 2569 598520992 598520854 1.030000e-54 224.0
11 TraesCS7D01G351300 chr7D 97.333 75 2 0 2495 2569 378711419 378711345 8.330000e-26 128.0
12 TraesCS7D01G351300 chr7D 96.000 75 3 0 2495 2569 452139339 452139265 3.880000e-24 122.0
13 TraesCS7D01G351300 chr7D 96.000 75 3 0 2556 2630 452139400 452139326 3.880000e-24 122.0
14 TraesCS7D01G351300 chr7D 95.946 74 3 0 2557 2630 378711540 378711467 1.390000e-23 121.0
15 TraesCS7D01G351300 chr7A 92.040 1407 54 22 644 2005 545519404 545520797 0.000000e+00 1925.0
16 TraesCS7D01G351300 chr7A 84.964 419 38 13 1 397 545515692 545516107 4.440000e-108 401.0
17 TraesCS7D01G351300 chr7A 85.235 149 9 2 637 772 545514634 545514782 1.070000e-29 141.0
18 TraesCS7D01G351300 chr7B 93.576 1152 38 14 548 1696 474435700 474434582 0.000000e+00 1685.0
19 TraesCS7D01G351300 chr7B 97.260 803 22 0 956 1758 468058433 468059235 0.000000e+00 1362.0
20 TraesCS7D01G351300 chr7B 92.162 421 16 8 1754 2160 474434585 474434168 1.910000e-161 579.0
21 TraesCS7D01G351300 chr7B 94.891 137 7 0 823 959 468052034 468052170 6.210000e-52 215.0
22 TraesCS7D01G351300 chr7B 85.714 133 9 2 401 533 474435809 474435687 6.440000e-27 132.0
23 TraesCS7D01G351300 chr6D 93.232 724 19 4 2154 2864 361415723 361415017 0.000000e+00 1038.0
24 TraesCS7D01G351300 chr6D 90.960 177 13 3 2326 2500 407468320 407468145 4.770000e-58 235.0
25 TraesCS7D01G351300 chr6D 95.946 74 3 0 2556 2629 361415370 361415297 1.390000e-23 121.0
26 TraesCS7D01G351300 chr6D 94.667 75 4 0 2495 2569 361415309 361415235 1.800000e-22 117.0
27 TraesCS7D01G351300 chr6D 95.082 61 3 0 2802 2862 407467937 407467997 2.350000e-16 97.1
28 TraesCS7D01G351300 chr1D 81.612 881 132 16 998 1860 382218990 382219858 0.000000e+00 702.0
29 TraesCS7D01G351300 chr1D 96.825 189 6 0 2153 2341 77831337 77831525 1.660000e-82 316.0
30 TraesCS7D01G351300 chr1D 93.785 177 8 3 2326 2500 492149029 492149204 2.190000e-66 263.0
31 TraesCS7D01G351300 chr1D 82.775 209 30 5 2134 2339 233311624 233311829 6.300000e-42 182.0
32 TraesCS7D01G351300 chr1D 95.238 63 3 0 2802 2864 492149412 492149350 1.820000e-17 100.0
33 TraesCS7D01G351300 chr1D 100.000 46 0 0 2760 2805 492149478 492149433 5.080000e-13 86.1
34 TraesCS7D01G351300 chr1A 81.653 883 128 21 998 1860 482328621 482329489 0.000000e+00 702.0
35 TraesCS7D01G351300 chr2D 89.274 317 19 4 2154 2457 459320885 459321199 1.610000e-102 383.0
36 TraesCS7D01G351300 chr2D 83.569 353 48 8 2153 2500 591457917 591458264 3.560000e-84 322.0
37 TraesCS7D01G351300 chr2D 84.456 193 28 2 2149 2340 609890003 609889812 3.770000e-44 189.0
38 TraesCS7D01G351300 chr2D 82.759 174 25 5 2144 2315 547563435 547563605 1.780000e-32 150.0
39 TraesCS7D01G351300 chr2D 98.413 63 1 0 2802 2864 591458472 591458410 8.390000e-21 111.0
40 TraesCS7D01G351300 chr5D 91.126 293 6 7 2152 2428 458842922 458842634 2.080000e-101 379.0
41 TraesCS7D01G351300 chr5D 97.340 188 5 0 2154 2341 458841844 458842031 1.280000e-83 320.0
42 TraesCS7D01G351300 chr5D 82.486 354 48 11 2154 2500 128567242 128567588 6.000000e-77 298.0
43 TraesCS7D01G351300 chr5D 82.759 174 26 4 2145 2315 75136843 75136671 4.940000e-33 152.0
44 TraesCS7D01G351300 chr5D 83.333 162 19 7 2147 2304 443719663 443719820 2.970000e-30 143.0
45 TraesCS7D01G351300 chr5D 81.287 171 26 6 2149 2315 75129555 75129723 1.790000e-27 134.0
46 TraesCS7D01G351300 chr5D 98.413 63 1 0 2802 2864 128567768 128567706 8.390000e-21 111.0
47 TraesCS7D01G351300 chr6A 92.857 168 10 2 2334 2500 25777804 25777970 2.850000e-60 243.0
48 TraesCS7D01G351300 chr6A 100.000 62 0 0 2803 2864 25778177 25778116 6.480000e-22 115.0
49 TraesCS7D01G351300 chr1B 76.716 335 53 15 2141 2457 560225202 560224875 2.280000e-36 163.0
50 TraesCS7D01G351300 chr3D 81.657 169 28 3 2148 2315 11281129 11280963 1.380000e-28 137.0
51 TraesCS7D01G351300 chr3D 84.397 141 19 3 2623 2761 609914294 609914155 4.980000e-28 135.0
52 TraesCS7D01G351300 chr3D 80.982 163 29 2 2154 2315 359629775 359629614 8.330000e-26 128.0
53 TraesCS7D01G351300 chr3A 83.916 143 16 6 2623 2761 518901602 518901741 2.320000e-26 130.0
54 TraesCS7D01G351300 chr2B 98.592 71 1 0 2623 2693 8013335 8013265 3.000000e-25 126.0
55 TraesCS7D01G351300 chr2B 98.592 71 1 0 2623 2693 8177427 8177357 3.000000e-25 126.0
56 TraesCS7D01G351300 chr2B 82.270 141 22 3 2623 2761 766551174 766551313 5.010000e-23 119.0
57 TraesCS7D01G351300 chr5A 83.217 143 17 6 2623 2761 680606621 680606482 1.080000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G351300 chr7D 452139031 452141894 2863 True 1844.333333 5289 97.333333 1 2864 3 chr7D.!!$R4 2863
1 TraesCS7D01G351300 chr7D 378711111 378711895 784 True 406.500000 721 96.403500 2154 2864 4 chr7D.!!$R3 710
2 TraesCS7D01G351300 chr7D 598520682 598521220 538 True 339.666667 440 95.682000 2153 2802 3 chr7D.!!$R5 649
3 TraesCS7D01G351300 chr7A 545514634 545520797 6163 False 822.333333 1925 87.413000 1 2005 3 chr7A.!!$F1 2004
4 TraesCS7D01G351300 chr7B 468058433 468059235 802 False 1362.000000 1362 97.260000 956 1758 1 chr7B.!!$F2 802
5 TraesCS7D01G351300 chr7B 474434168 474435809 1641 True 798.666667 1685 90.484000 401 2160 3 chr7B.!!$R1 1759
6 TraesCS7D01G351300 chr6D 361415017 361415723 706 True 425.333333 1038 94.615000 2154 2864 3 chr6D.!!$R2 710
7 TraesCS7D01G351300 chr1D 382218990 382219858 868 False 702.000000 702 81.612000 998 1860 1 chr1D.!!$F3 862
8 TraesCS7D01G351300 chr1A 482328621 482329489 868 False 702.000000 702 81.653000 998 1860 1 chr1A.!!$F1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 4414 0.386731 AAACGGAAATTCGCGCTTGG 60.387 50.0 5.56 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 6089 0.521242 GTCTTATTTGTGCGCCGCAG 60.521 55.0 14.23 0.0 40.08 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 1112 5.959652 ATTTGTGAACCTTTTGCGTTAAC 57.040 34.783 0.00 0.00 0.00 2.01
71 1130 9.340695 TGCGTTAACTTTTATGATGAAAATCTG 57.659 29.630 3.71 0.00 0.00 2.90
161 1220 9.334947 TCATGAACAATTTTTAAATCTGCCAAA 57.665 25.926 0.00 0.00 0.00 3.28
267 1346 4.682563 TCCTTGAAATTTGGGGAGCATTA 58.317 39.130 0.00 0.00 0.00 1.90
268 1347 5.279685 TCCTTGAAATTTGGGGAGCATTAT 58.720 37.500 0.00 0.00 0.00 1.28
336 1417 0.666913 CGTACCACCTAGGATCCACG 59.333 60.000 17.98 15.04 41.22 4.94
337 1418 0.388294 GTACCACCTAGGATCCACGC 59.612 60.000 17.98 0.00 41.22 5.34
372 1453 4.899502 AGATGGTTTAAGAGGTCACACTG 58.100 43.478 0.00 0.00 0.00 3.66
435 4218 1.004628 AGTACCATGCATGTGCCTTCA 59.995 47.619 24.58 0.00 41.18 3.02
440 4230 3.069016 ACCATGCATGTGCCTTCATTATG 59.931 43.478 24.58 7.48 41.18 1.90
473 4264 2.831685 ACTTTGACATCCTGTACGCA 57.168 45.000 0.00 0.00 0.00 5.24
474 4265 2.688507 ACTTTGACATCCTGTACGCAG 58.311 47.619 0.00 0.00 42.22 5.18
569 4361 3.450817 AGTGGCCTAACAAATTAATGCCC 59.549 43.478 3.32 1.48 37.43 5.36
570 4362 2.428890 TGGCCTAACAAATTAATGCCCG 59.571 45.455 3.32 0.00 37.43 6.13
571 4363 2.223947 GGCCTAACAAATTAATGCCCGG 60.224 50.000 0.00 0.00 34.41 5.73
572 4364 2.223947 GCCTAACAAATTAATGCCCGGG 60.224 50.000 19.09 19.09 0.00 5.73
599 4391 2.951475 AATGTGCCGACAACCCACGT 62.951 55.000 0.00 0.00 35.11 4.49
616 4408 3.394800 GTGGGAAACGGAAATTCGC 57.605 52.632 0.00 0.00 39.43 4.70
622 4414 0.386731 AAACGGAAATTCGCGCTTGG 60.387 50.000 5.56 0.00 0.00 3.61
652 4793 5.708697 TCGTCCAGTGTAATCTAGTCTGAAA 59.291 40.000 0.00 0.00 0.00 2.69
653 4794 6.377429 TCGTCCAGTGTAATCTAGTCTGAAAT 59.623 38.462 0.00 0.00 0.00 2.17
658 4799 7.824289 CCAGTGTAATCTAGTCTGAAATTTCCA 59.176 37.037 15.48 3.32 0.00 3.53
684 4825 4.577283 TCTGAACGGATATGTGATGTCGTA 59.423 41.667 0.00 0.00 0.00 3.43
740 4888 3.770666 TGGAAATCTCTCGAGCGTTAAG 58.229 45.455 7.81 0.00 0.00 1.85
772 4927 1.617018 AACCGCTGCCATGAGAGCTA 61.617 55.000 12.43 0.00 32.70 3.32
942 5116 4.143030 CGCTATAAATTCGGAGAATGCCTG 60.143 45.833 0.00 0.00 45.90 4.85
995 5178 2.672961 TTCATTCGATCCGTTGAGCT 57.327 45.000 0.00 0.00 0.00 4.09
1890 6095 2.072298 GATTCTATCCATGTCTGCGGC 58.928 52.381 0.00 0.00 0.00 6.53
1892 6097 2.280119 TATCCATGTCTGCGGCGC 60.280 61.111 27.44 27.44 0.00 6.53
1974 6188 8.469200 CGGATATGTACGGGGACTAAATAAATA 58.531 37.037 0.00 0.00 0.00 1.40
2061 6278 2.554032 CACCCTACTTTGGTTTGCTCTG 59.446 50.000 0.00 0.00 32.46 3.35
2087 6304 2.267426 TGTGTCTTTCGTGTGAGTGTG 58.733 47.619 0.00 0.00 0.00 3.82
2091 6308 2.033662 GTCTTTCGTGTGAGTGTGAAGC 60.034 50.000 0.00 0.00 0.00 3.86
2124 6341 0.843309 TGGGACCGCCAATACATCAT 59.157 50.000 0.00 0.00 35.15 2.45
2127 6344 2.066262 GGACCGCCAATACATCATACG 58.934 52.381 0.00 0.00 0.00 3.06
2131 6348 2.353307 CCGCCAATACATCATACGCCTA 60.353 50.000 0.00 0.00 0.00 3.93
2133 6350 3.932710 CGCCAATACATCATACGCCTAAT 59.067 43.478 0.00 0.00 0.00 1.73
2134 6351 4.391830 CGCCAATACATCATACGCCTAATT 59.608 41.667 0.00 0.00 0.00 1.40
2135 6352 5.106712 CGCCAATACATCATACGCCTAATTT 60.107 40.000 0.00 0.00 0.00 1.82
2184 6401 6.628919 AGCATAAAACTACCACTTTTCGTT 57.371 33.333 0.00 0.00 0.00 3.85
2405 6634 5.123936 AGCAATCGGTCCCTATAAGTTTTC 58.876 41.667 0.00 0.00 0.00 2.29
2423 6652 6.643388 AGTTTTCTGAAAAAGCAATCAGGTT 58.357 32.000 16.47 0.00 42.62 3.50
2425 6654 4.853924 TCTGAAAAAGCAATCAGGTTCC 57.146 40.909 3.23 0.00 42.62 3.62
2426 6655 4.473444 TCTGAAAAAGCAATCAGGTTCCT 58.527 39.130 3.23 0.00 42.62 3.36
2427 6656 4.279169 TCTGAAAAAGCAATCAGGTTCCTG 59.721 41.667 12.20 12.20 42.62 3.86
2428 6657 3.960102 TGAAAAAGCAATCAGGTTCCTGT 59.040 39.130 17.00 3.94 36.83 4.00
2429 6658 4.202141 TGAAAAAGCAATCAGGTTCCTGTG 60.202 41.667 17.00 10.90 36.83 3.66
2430 6659 2.957402 AAGCAATCAGGTTCCTGTGA 57.043 45.000 17.00 1.45 35.70 3.58
2431 6660 2.486472 AGCAATCAGGTTCCTGTGAG 57.514 50.000 17.00 9.76 35.70 3.51
2432 6661 1.701847 AGCAATCAGGTTCCTGTGAGT 59.298 47.619 17.00 0.00 35.70 3.41
2433 6662 2.107204 AGCAATCAGGTTCCTGTGAGTT 59.893 45.455 17.00 7.08 35.70 3.01
2434 6663 2.887152 GCAATCAGGTTCCTGTGAGTTT 59.113 45.455 17.00 4.15 35.70 2.66
2435 6664 3.319122 GCAATCAGGTTCCTGTGAGTTTT 59.681 43.478 17.00 2.73 35.70 2.43
2436 6665 4.557496 GCAATCAGGTTCCTGTGAGTTTTC 60.557 45.833 17.00 0.00 35.70 2.29
2437 6666 4.713792 ATCAGGTTCCTGTGAGTTTTCT 57.286 40.909 17.00 0.00 35.70 2.52
2438 6667 3.808728 TCAGGTTCCTGTGAGTTTTCTG 58.191 45.455 17.00 0.00 35.70 3.02
2439 6668 3.454447 TCAGGTTCCTGTGAGTTTTCTGA 59.546 43.478 17.00 0.00 35.70 3.27
2440 6669 4.080582 TCAGGTTCCTGTGAGTTTTCTGAA 60.081 41.667 17.00 0.00 35.70 3.02
2481 6773 0.886490 CAAGGCAACGCTGTCTCCTT 60.886 55.000 0.00 0.00 36.11 3.36
2485 6777 1.006102 CAACGCTGTCTCCTTCGGT 60.006 57.895 0.00 0.00 0.00 4.69
2554 6968 3.774528 CCCCGCTGCTCTGCTGTA 61.775 66.667 0.00 0.00 0.00 2.74
2555 6969 2.510238 CCCGCTGCTCTGCTGTAC 60.510 66.667 0.00 0.00 0.00 2.90
2556 6970 2.882777 CCGCTGCTCTGCTGTACG 60.883 66.667 0.00 0.00 0.00 3.67
2557 6971 3.549150 CGCTGCTCTGCTGTACGC 61.549 66.667 0.00 3.22 39.77 4.42
2558 6972 3.549150 GCTGCTCTGCTGTACGCG 61.549 66.667 3.53 3.53 43.27 6.01
2559 6973 3.549150 CTGCTCTGCTGTACGCGC 61.549 66.667 5.73 0.00 43.27 6.86
2591 7005 3.726517 CTCGCCGGCCAACAACAG 61.727 66.667 23.46 3.72 0.00 3.16
2598 7012 4.683334 GCCAACAACAGCGCCGTC 62.683 66.667 2.29 0.00 0.00 4.79
2599 7013 4.025401 CCAACAACAGCGCCGTCC 62.025 66.667 2.29 0.00 0.00 4.79
2600 7014 4.025401 CAACAACAGCGCCGTCCC 62.025 66.667 2.29 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 1319 4.256110 GCTCCCCAAATTTCAAGGAAATG 58.744 43.478 5.07 0.00 40.77 2.32
242 1320 3.909364 TGCTCCCCAAATTTCAAGGAAAT 59.091 39.130 0.00 0.00 43.07 2.17
243 1321 3.312890 TGCTCCCCAAATTTCAAGGAAA 58.687 40.909 0.00 0.00 35.94 3.13
246 1324 3.986996 AATGCTCCCCAAATTTCAAGG 57.013 42.857 0.00 0.00 0.00 3.61
255 1334 9.575868 TTTACGAATTTATATAATGCTCCCCAA 57.424 29.630 0.00 0.00 0.00 4.12
256 1335 9.575868 TTTTACGAATTTATATAATGCTCCCCA 57.424 29.630 0.00 0.00 0.00 4.96
304 1385 2.517875 GTACGAGCGAGGGCCCTA 60.518 66.667 28.78 3.46 41.24 3.53
336 1417 1.065701 ACCATCTCACTCACGTATCGC 59.934 52.381 0.00 0.00 0.00 4.58
337 1418 3.422417 AACCATCTCACTCACGTATCG 57.578 47.619 0.00 0.00 0.00 2.92
343 1424 5.153950 ACCTCTTAAACCATCTCACTCAC 57.846 43.478 0.00 0.00 0.00 3.51
346 1427 4.593206 TGTGACCTCTTAAACCATCTCACT 59.407 41.667 0.00 0.00 0.00 3.41
372 1453 7.545265 TCAACAAATTTTAGCATGGAGTATTGC 59.455 33.333 0.00 0.00 0.00 3.56
467 4258 0.174162 ACGGTATTGACCCTGCGTAC 59.826 55.000 0.00 0.00 43.64 3.67
473 4264 3.321111 CACTAGCATACGGTATTGACCCT 59.679 47.826 0.00 0.00 43.64 4.34
474 4265 3.069158 ACACTAGCATACGGTATTGACCC 59.931 47.826 0.00 0.00 43.64 4.46
492 4283 3.675228 CGCGTAGAATTCCACCTTACACT 60.675 47.826 0.65 0.00 0.00 3.55
541 4333 6.732896 TTAATTTGTTAGGCCACTTTCCAA 57.267 33.333 5.01 0.00 0.00 3.53
569 4361 2.464459 GGCACATTCTCTTCGCCCG 61.464 63.158 0.00 0.00 36.73 6.13
570 4362 2.464459 CGGCACATTCTCTTCGCCC 61.464 63.158 0.00 0.00 39.69 6.13
571 4363 1.447838 TCGGCACATTCTCTTCGCC 60.448 57.895 0.00 0.00 39.45 5.54
572 4364 1.014044 TGTCGGCACATTCTCTTCGC 61.014 55.000 0.00 0.00 0.00 4.70
599 4391 1.870383 CGCGAATTTCCGTTTCCCA 59.130 52.632 0.00 0.00 0.00 4.37
603 4395 0.386731 CCAAGCGCGAATTTCCGTTT 60.387 50.000 12.10 6.42 0.00 3.60
605 4397 2.867472 CCAAGCGCGAATTTCCGT 59.133 55.556 12.10 0.00 0.00 4.69
606 4398 2.576847 GCCAAGCGCGAATTTCCG 60.577 61.111 12.10 3.76 0.00 4.30
622 4414 2.033550 AGATTACACTGGACGAGATCGC 59.966 50.000 1.39 0.00 44.43 4.58
652 4793 5.528690 CACATATCCGTTCAGATGTGGAAAT 59.471 40.000 6.05 0.00 43.48 2.17
653 4794 4.875536 CACATATCCGTTCAGATGTGGAAA 59.124 41.667 6.05 0.00 43.48 3.13
658 4799 5.282055 ACATCACATATCCGTTCAGATGT 57.718 39.130 0.00 0.00 39.59 3.06
741 4889 3.357079 GCGGTTCTGTGCCTGTGG 61.357 66.667 0.00 0.00 0.00 4.17
743 4891 2.281070 CAGCGGTTCTGTGCCTGT 60.281 61.111 0.00 0.00 38.02 4.00
744 4892 3.730761 GCAGCGGTTCTGTGCCTG 61.731 66.667 0.00 0.00 44.66 4.85
749 4897 1.376424 CTCATGGCAGCGGTTCTGT 60.376 57.895 0.00 0.00 44.66 3.41
772 4927 1.837538 CGCGGGAACATCACACGTTT 61.838 55.000 0.00 0.00 0.00 3.60
801 4956 2.473609 TCGTTGTTTTGACGGATCTTCG 59.526 45.455 0.00 0.00 40.70 3.79
802 4957 3.246699 TGTCGTTGTTTTGACGGATCTTC 59.753 43.478 0.00 0.00 40.70 2.87
803 4958 3.001939 GTGTCGTTGTTTTGACGGATCTT 59.998 43.478 0.00 0.00 40.70 2.40
953 5127 2.702478 TCTAGCTCAGTGGATGGAATGG 59.298 50.000 0.00 0.00 0.00 3.16
959 5133 5.177142 CGAATGAAATCTAGCTCAGTGGATG 59.823 44.000 0.00 0.00 0.00 3.51
995 5178 0.457035 GTACCCGTTCGTCATGGCTA 59.543 55.000 0.00 0.00 0.00 3.93
1883 6088 0.672091 TCTTATTTGTGCGCCGCAGA 60.672 50.000 14.23 9.10 40.08 4.26
1884 6089 0.521242 GTCTTATTTGTGCGCCGCAG 60.521 55.000 14.23 0.00 40.08 5.18
1890 6095 4.146961 CAGCAAACTTGTCTTATTTGTGCG 59.853 41.667 0.00 0.00 36.04 5.34
1892 6097 5.042593 TGCAGCAAACTTGTCTTATTTGTG 58.957 37.500 0.00 0.00 36.04 3.33
1974 6188 5.556355 TCAAGATTGAGTACGTACACGAT 57.444 39.130 26.55 23.80 36.39 3.73
1991 6206 5.468746 GCATGGTAATACCGCTTATTCAAGA 59.531 40.000 4.83 0.00 42.58 3.02
2061 6278 2.480037 TCACACGAAAGACACATCATGC 59.520 45.455 0.00 0.00 0.00 4.06
2087 6304 4.697352 GTCCCATACATACATCCATGCTTC 59.303 45.833 0.00 0.00 0.00 3.86
2091 6308 3.599343 CGGTCCCATACATACATCCATG 58.401 50.000 0.00 0.00 0.00 3.66
2382 6611 4.772886 AAACTTATAGGGACCGATTGCT 57.227 40.909 0.00 0.00 0.00 3.91
2383 6612 5.007724 CAGAAAACTTATAGGGACCGATTGC 59.992 44.000 0.00 0.00 0.00 3.56
2384 6613 6.346096 TCAGAAAACTTATAGGGACCGATTG 58.654 40.000 0.00 0.00 0.00 2.67
2386 6615 6.555463 TTCAGAAAACTTATAGGGACCGAT 57.445 37.500 0.00 0.00 0.00 4.18
2387 6616 6.363167 TTTCAGAAAACTTATAGGGACCGA 57.637 37.500 0.00 0.00 0.00 4.69
2388 6617 7.443259 TTTTTCAGAAAACTTATAGGGACCG 57.557 36.000 7.89 0.00 30.07 4.79
2397 6626 7.781056 ACCTGATTGCTTTTTCAGAAAACTTA 58.219 30.769 7.89 0.00 41.53 2.24
2405 6634 4.038402 ACAGGAACCTGATTGCTTTTTCAG 59.962 41.667 25.03 0.00 46.30 3.02
2423 6652 4.704540 TGCTTTTTCAGAAAACTCACAGGA 59.295 37.500 7.89 1.49 31.72 3.86
2425 6654 6.075205 CGATTGCTTTTTCAGAAAACTCACAG 60.075 38.462 7.89 4.14 31.72 3.66
2426 6655 5.743398 CGATTGCTTTTTCAGAAAACTCACA 59.257 36.000 7.89 2.06 31.72 3.58
2427 6656 5.173854 CCGATTGCTTTTTCAGAAAACTCAC 59.826 40.000 7.89 0.00 31.72 3.51
2428 6657 5.280945 CCGATTGCTTTTTCAGAAAACTCA 58.719 37.500 7.89 6.40 31.72 3.41
2429 6658 4.681483 CCCGATTGCTTTTTCAGAAAACTC 59.319 41.667 7.89 3.97 31.72 3.01
2430 6659 4.099419 ACCCGATTGCTTTTTCAGAAAACT 59.901 37.500 7.89 0.00 31.72 2.66
2431 6660 4.368315 ACCCGATTGCTTTTTCAGAAAAC 58.632 39.130 7.89 0.00 31.72 2.43
2432 6661 4.500716 GGACCCGATTGCTTTTTCAGAAAA 60.501 41.667 4.06 4.06 33.86 2.29
2433 6662 3.005367 GGACCCGATTGCTTTTTCAGAAA 59.995 43.478 0.00 0.00 0.00 2.52
2434 6663 2.556622 GGACCCGATTGCTTTTTCAGAA 59.443 45.455 0.00 0.00 0.00 3.02
2435 6664 2.159382 GGACCCGATTGCTTTTTCAGA 58.841 47.619 0.00 0.00 0.00 3.27
2436 6665 1.202348 GGGACCCGATTGCTTTTTCAG 59.798 52.381 0.00 0.00 0.00 3.02
2437 6666 1.253100 GGGACCCGATTGCTTTTTCA 58.747 50.000 0.00 0.00 0.00 2.69
2574 6988 3.726517 CTGTTGTTGGCCGGCGAG 61.727 66.667 22.54 0.00 0.00 5.03
2581 6995 4.683334 GACGGCGCTGTTGTTGGC 62.683 66.667 25.17 5.42 0.00 4.52
2582 6996 4.025401 GGACGGCGCTGTTGTTGG 62.025 66.667 25.17 0.00 0.00 3.77
2583 6997 4.025401 GGGACGGCGCTGTTGTTG 62.025 66.667 25.17 0.00 0.00 3.33
2596 7010 3.741476 CAGCAAAGCAGCGGGGAC 61.741 66.667 0.00 0.00 40.15 4.46
2597 7011 2.889606 TACAGCAAAGCAGCGGGGA 61.890 57.895 0.00 0.00 40.15 4.81
2598 7012 2.359850 TACAGCAAAGCAGCGGGG 60.360 61.111 0.00 0.00 40.15 5.73
2599 7013 2.870372 GTACAGCAAAGCAGCGGG 59.130 61.111 0.00 0.00 40.15 6.13
2600 7014 2.476051 CGTACAGCAAAGCAGCGG 59.524 61.111 0.00 0.00 40.15 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.