Multiple sequence alignment - TraesCS7D01G350900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G350900 chr7D 100.000 8596 0 0 1 8596 451893275 451884680 0.000000e+00 15874.0
1 TraesCS7D01G350900 chr7D 87.402 1143 144 0 5433 6575 11794830 11793688 0.000000e+00 1314.0
2 TraesCS7D01G350900 chr7D 84.987 373 38 5 6761 7133 452976810 452977164 6.340000e-96 363.0
3 TraesCS7D01G350900 chr7B 93.762 4617 160 54 406 4936 474288357 474283783 0.000000e+00 6813.0
4 TraesCS7D01G350900 chr7B 97.448 862 20 2 6577 7437 474282501 474281641 0.000000e+00 1469.0
5 TraesCS7D01G350900 chr7B 83.220 590 60 12 6577 7133 476219712 476220295 9.960000e-139 505.0
6 TraesCS7D01G350900 chr7B 97.255 255 7 0 5185 5439 474282741 474282487 4.770000e-117 433.0
7 TraesCS7D01G350900 chr7B 96.457 254 9 0 4933 5186 474283665 474283412 3.710000e-113 420.0
8 TraesCS7D01G350900 chr7B 84.416 385 34 15 1 371 474289704 474289332 1.060000e-93 355.0
9 TraesCS7D01G350900 chr7B 87.330 221 16 7 8142 8353 476216958 476217175 8.620000e-60 243.0
10 TraesCS7D01G350900 chr7A 90.680 3455 164 53 305 3639 545599128 545602544 0.000000e+00 4451.0
11 TraesCS7D01G350900 chr7A 94.813 1388 57 11 6577 7952 545605462 545606846 0.000000e+00 2150.0
12 TraesCS7D01G350900 chr7A 93.075 1314 61 14 3637 4936 545602684 545603981 0.000000e+00 1895.0
13 TraesCS7D01G350900 chr7A 89.255 577 41 6 6577 7133 544255951 544255376 0.000000e+00 702.0
14 TraesCS7D01G350900 chr7A 95.312 256 10 2 5185 5439 545605222 545605476 1.040000e-108 405.0
15 TraesCS7D01G350900 chr7A 94.902 255 12 1 4933 5186 545604103 545604357 1.740000e-106 398.0
16 TraesCS7D01G350900 chr7A 87.984 258 20 8 52 307 545598789 545599037 2.350000e-75 294.0
17 TraesCS7D01G350900 chr7A 88.073 218 14 6 8145 8353 544258404 544258190 1.850000e-61 248.0
18 TraesCS7D01G350900 chr7A 93.162 117 7 1 8238 8353 545607065 545607181 4.130000e-38 171.0
19 TraesCS7D01G350900 chr7A 79.275 193 22 8 8385 8560 545607750 545607941 1.520000e-22 119.0
20 TraesCS7D01G350900 chr7A 89.888 89 6 2 8145 8233 545606842 545606927 2.540000e-20 111.0
21 TraesCS7D01G350900 chrUn 87.839 1143 139 0 5433 6575 269653859 269655001 0.000000e+00 1341.0
22 TraesCS7D01G350900 chrUn 87.839 1143 139 0 5433 6575 291402998 291404140 0.000000e+00 1341.0
23 TraesCS7D01G350900 chr1B 87.640 1157 129 4 5433 6575 628040557 628039401 0.000000e+00 1332.0
24 TraesCS7D01G350900 chr1B 82.639 1152 162 19 5439 6577 97740294 97739168 0.000000e+00 985.0
25 TraesCS7D01G350900 chr1B 79.158 475 80 13 2886 3356 684214481 684214940 2.330000e-80 311.0
26 TraesCS7D01G350900 chr2A 82.245 1149 176 16 5432 6575 694645351 694646476 0.000000e+00 966.0
27 TraesCS7D01G350900 chr3D 89.565 690 68 3 5890 6576 567303256 567303944 0.000000e+00 872.0
28 TraesCS7D01G350900 chr6A 77.496 1422 230 52 2185 3558 7380431 7379052 0.000000e+00 771.0
29 TraesCS7D01G350900 chr6A 80.648 1018 160 22 2551 3558 7372933 7371943 0.000000e+00 754.0
30 TraesCS7D01G350900 chr6A 83.025 648 83 10 6577 7200 7370508 7369864 5.830000e-156 562.0
31 TraesCS7D01G350900 chr6A 85.175 371 42 9 6577 6934 7373316 7372946 1.360000e-97 368.0
32 TraesCS7D01G350900 chr6A 82.915 199 29 4 5252 5450 7370678 7370485 3.190000e-39 174.0
33 TraesCS7D01G350900 chr6A 95.349 43 2 0 988 1030 7380907 7380865 1.550000e-07 69.4
34 TraesCS7D01G350900 chr6D 80.569 808 116 23 2555 3349 7459622 7458843 1.240000e-162 584.0
35 TraesCS7D01G350900 chr6D 79.691 842 130 26 2726 3558 7464522 7463713 3.480000e-158 569.0
36 TraesCS7D01G350900 chr6D 82.206 680 88 15 6577 7234 7456712 7456044 9.750000e-154 555.0
37 TraesCS7D01G350900 chr6D 83.924 367 42 8 6585 6934 7460005 7459639 1.380000e-87 335.0
38 TraesCS7D01G350900 chr6D 75.382 524 69 27 2185 2672 7465018 7464519 1.890000e-46 198.0
39 TraesCS7D01G350900 chr6D 81.910 199 31 5 5252 5450 7456882 7456689 6.900000e-36 163.0
40 TraesCS7D01G350900 chr1D 81.277 470 67 14 2880 3344 491730418 491729965 2.280000e-95 361.0
41 TraesCS7D01G350900 chr1A 79.909 438 69 11 2913 3344 589685093 589684669 3.900000e-78 303.0
42 TraesCS7D01G350900 chr5B 93.902 82 4 1 6496 6577 617599946 617600026 1.170000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G350900 chr7D 451884680 451893275 8595 True 15874.000000 15874 100.000000 1 8596 1 chr7D.!!$R2 8595
1 TraesCS7D01G350900 chr7D 11793688 11794830 1142 True 1314.000000 1314 87.402000 5433 6575 1 chr7D.!!$R1 1142
2 TraesCS7D01G350900 chr7B 474281641 474289704 8063 True 1898.000000 6813 93.867600 1 7437 5 chr7B.!!$R1 7436
3 TraesCS7D01G350900 chr7B 476216958 476220295 3337 False 374.000000 505 85.275000 6577 8353 2 chr7B.!!$F1 1776
4 TraesCS7D01G350900 chr7A 545598789 545607941 9152 False 1110.444444 4451 91.010111 52 8560 9 chr7A.!!$F1 8508
5 TraesCS7D01G350900 chr7A 544255376 544258404 3028 True 475.000000 702 88.664000 6577 8353 2 chr7A.!!$R1 1776
6 TraesCS7D01G350900 chrUn 269653859 269655001 1142 False 1341.000000 1341 87.839000 5433 6575 1 chrUn.!!$F1 1142
7 TraesCS7D01G350900 chrUn 291402998 291404140 1142 False 1341.000000 1341 87.839000 5433 6575 1 chrUn.!!$F2 1142
8 TraesCS7D01G350900 chr1B 628039401 628040557 1156 True 1332.000000 1332 87.640000 5433 6575 1 chr1B.!!$R2 1142
9 TraesCS7D01G350900 chr1B 97739168 97740294 1126 True 985.000000 985 82.639000 5439 6577 1 chr1B.!!$R1 1138
10 TraesCS7D01G350900 chr2A 694645351 694646476 1125 False 966.000000 966 82.245000 5432 6575 1 chr2A.!!$F1 1143
11 TraesCS7D01G350900 chr3D 567303256 567303944 688 False 872.000000 872 89.565000 5890 6576 1 chr3D.!!$F1 686
12 TraesCS7D01G350900 chr6A 7369864 7373316 3452 True 464.500000 754 82.940750 2551 7200 4 chr6A.!!$R1 4649
13 TraesCS7D01G350900 chr6A 7379052 7380907 1855 True 420.200000 771 86.422500 988 3558 2 chr6A.!!$R2 2570
14 TraesCS7D01G350900 chr6D 7456044 7465018 8974 True 400.666667 584 80.613667 2185 7234 6 chr6D.!!$R1 5049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 132 0.036765 GAGTGGGTGATGCGTGGTTA 60.037 55.000 0.00 0.00 0.00 2.85 F
564 1629 0.387239 GCACATTCGTGGGCTCAAAC 60.387 55.000 0.00 0.00 43.81 2.93 F
1230 2341 1.227999 CGTTGAGTCCGCCACAACAT 61.228 55.000 0.00 0.00 42.37 2.71 F
2045 3219 1.075601 AAACAATCCTGGGCTGAGGA 58.924 50.000 8.05 8.05 46.47 3.71 F
3690 10467 0.102300 CGTGGCAGACCGTGATATGA 59.898 55.000 0.00 0.00 39.70 2.15 F
3863 10640 0.105224 CGTAGGTGTGGTGGTGTGAA 59.895 55.000 0.00 0.00 0.00 3.18 F
4572 11359 0.179045 AACTCGTGCTTTCACAGGCT 60.179 50.000 0.00 0.00 43.28 4.58 F
5705 14022 1.069823 AGAGGGCACAATCTATCGCTG 59.930 52.381 0.00 0.00 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 2335 0.029300 GAACACGCAGCACATGTTGT 59.971 50.000 10.60 0.00 34.17 3.32 R
1535 2676 1.468565 CGGCTGTGATTCCTTGCATTG 60.469 52.381 0.00 0.00 0.00 2.82 R
2650 8877 2.298158 CTGATACGGCGGCCTTGTCT 62.298 60.000 20.05 4.51 0.00 3.41 R
3844 10621 0.105224 TTCACACCACCACACCTACG 59.895 55.000 0.00 0.00 0.00 3.51 R
5269 13584 1.538512 CAATGTGAACAGGGCAGTCTG 59.461 52.381 0.00 0.00 40.40 3.51 R
5783 14100 1.548973 CCGTGATATTCCAGACGCGC 61.549 60.000 5.73 0.00 35.43 6.86 R
6314 14646 1.064946 GACCTCAGTGATCGCCGAG 59.935 63.158 11.83 11.83 0.00 4.63 R
7605 16007 0.233848 CGCACAAAACTACGGTGGAC 59.766 55.000 0.00 0.00 33.25 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.388778 TGAAGACGCGCGGTTAATCA 60.389 50.000 35.22 24.90 0.00 2.57
122 132 0.036765 GAGTGGGTGATGCGTGGTTA 60.037 55.000 0.00 0.00 0.00 2.85
123 133 0.398696 AGTGGGTGATGCGTGGTTAA 59.601 50.000 0.00 0.00 0.00 2.01
138 148 6.018588 TGCGTGGTTAAAAATATACTCCGATG 60.019 38.462 0.00 0.00 0.00 3.84
173 183 3.873812 GGGGTGGGGACATAGGCG 61.874 72.222 0.00 0.00 46.14 5.52
186 196 3.326747 ACATAGGCGGCGATTTTATCTC 58.673 45.455 12.98 0.00 0.00 2.75
206 217 2.634940 TCAACTCTGAAGTCAAGGGGAG 59.365 50.000 0.00 0.00 33.48 4.30
263 279 1.131504 GTTGTTGGTTGTTGCGAGTGA 59.868 47.619 0.00 0.00 0.00 3.41
512 1560 1.969589 CACGTCCCCCGGGAAAAAG 60.970 63.158 26.32 11.57 45.03 2.27
516 1564 2.871378 TCCCCCGGGAAAAAGAAGA 58.129 52.632 26.32 2.04 42.05 2.87
564 1629 0.387239 GCACATTCGTGGGCTCAAAC 60.387 55.000 0.00 0.00 43.81 2.93
882 1976 4.258932 CACCCACGCGCCGTTTTT 62.259 61.111 5.73 0.00 38.32 1.94
936 2030 6.139048 CTAGAACAACCCTAGCTAACTCTC 57.861 45.833 0.00 0.00 0.00 3.20
1146 2257 3.736224 CCCATGAGCCAGCACCCT 61.736 66.667 0.00 0.00 0.00 4.34
1224 2335 2.028484 GTGTCGTTGAGTCCGCCA 59.972 61.111 0.00 0.00 0.00 5.69
1227 2338 1.593209 GTCGTTGAGTCCGCCACAA 60.593 57.895 0.00 0.00 0.00 3.33
1230 2341 1.227999 CGTTGAGTCCGCCACAACAT 61.228 55.000 0.00 0.00 42.37 2.71
1535 2676 2.434359 GCAGGCAGACGGTGGTAC 60.434 66.667 0.00 0.00 0.00 3.34
1565 2706 1.204146 ATCACAGCCGTATTCCAGGT 58.796 50.000 0.00 0.00 0.00 4.00
1617 2767 3.710209 AAGGTTGCTGCTATCAGAAGT 57.290 42.857 0.00 0.00 42.95 3.01
1640 2790 3.275617 ACACGGTGGCATGTTATGTAT 57.724 42.857 13.48 0.00 0.00 2.29
1729 2903 1.631405 TCTTTTGCAAGGTGATGGGG 58.369 50.000 0.00 0.00 0.00 4.96
1821 2995 4.042062 AGGATGTCTGATGTTCAAACTGGA 59.958 41.667 0.00 0.00 0.00 3.86
1905 3079 6.000840 AGAAGAAAAGAAGGTCAGGATTCAC 58.999 40.000 0.00 0.00 0.00 3.18
1925 3099 1.901833 CAAGGCCCAAAGGTTAGCATT 59.098 47.619 0.00 0.00 34.57 3.56
1926 3100 1.852633 AGGCCCAAAGGTTAGCATTC 58.147 50.000 0.00 0.00 34.57 2.67
1927 3101 1.077005 AGGCCCAAAGGTTAGCATTCA 59.923 47.619 0.00 0.00 34.57 2.57
1928 3102 2.110578 GGCCCAAAGGTTAGCATTCAT 58.889 47.619 0.00 0.00 34.57 2.57
1929 3103 3.052944 AGGCCCAAAGGTTAGCATTCATA 60.053 43.478 0.00 0.00 34.57 2.15
1930 3104 3.704061 GGCCCAAAGGTTAGCATTCATAA 59.296 43.478 0.00 0.00 34.57 1.90
1931 3105 4.161377 GGCCCAAAGGTTAGCATTCATAAA 59.839 41.667 0.00 0.00 34.57 1.40
2045 3219 1.075601 AAACAATCCTGGGCTGAGGA 58.924 50.000 8.05 8.05 46.47 3.71
2178 3352 3.809279 GCAAAAATGGTTGTTCTTCCTGG 59.191 43.478 0.00 0.00 0.00 4.45
2324 3510 3.072330 TCCATCAGAACCTGTTGCAGTTA 59.928 43.478 0.00 0.00 31.91 2.24
2509 3716 5.023533 TGAAGGTTATGGAGAATCTTCCG 57.976 43.478 4.91 0.00 43.23 4.30
2553 3760 2.022195 CATGCAGGTCCTTGATTCAGG 58.978 52.381 0.00 0.00 34.86 3.86
2650 8877 5.359576 GTCAGCAAATGTTCCCATAACCATA 59.640 40.000 0.00 0.00 0.00 2.74
2784 9014 2.887152 CAGTTGAAGAACCAAAGGGAGG 59.113 50.000 0.00 0.00 38.05 4.30
3022 9259 8.158169 TGATACTCATGCATGATTAACCTTTC 57.842 34.615 28.81 19.65 36.02 2.62
3103 9340 6.109320 ACGAATTTTAACGAACAACAGACA 57.891 33.333 0.00 0.00 0.00 3.41
3171 9408 1.388547 TGGCGGCATCCTTATTTCAC 58.611 50.000 7.97 0.00 0.00 3.18
3256 9493 3.679389 TGAAATCAAGGGAAGAGTGAGC 58.321 45.455 0.00 0.00 0.00 4.26
3310 9547 1.070289 CCTAAATCCAGGAGCCGTACC 59.930 57.143 0.00 0.00 38.00 3.34
3372 10003 7.701539 ATGCTATTGTTGGTTTGATGACTAA 57.298 32.000 0.00 0.00 0.00 2.24
3659 10433 0.393448 TGCCACCGTTAGTTAGTGCA 59.607 50.000 0.00 0.00 0.00 4.57
3668 10442 4.154195 CCGTTAGTTAGTGCATTTGAAGCT 59.846 41.667 0.00 0.00 0.00 3.74
3686 10460 0.108804 CTAACGTGGCAGACCGTGAT 60.109 55.000 2.25 0.00 39.70 3.06
3690 10467 0.102300 CGTGGCAGACCGTGATATGA 59.898 55.000 0.00 0.00 39.70 2.15
3699 10476 0.465705 CCGTGATATGAGCCTGTGGT 59.534 55.000 0.00 0.00 0.00 4.16
3753 10530 2.257207 CACCTGGGTTCAGACCTTAGA 58.743 52.381 0.00 0.00 45.75 2.10
3802 10579 4.940046 CAGGGTGCATCCTCATGTTATATC 59.060 45.833 18.07 0.00 34.31 1.63
3844 10621 4.065110 GGAGACCCACACTTGTGC 57.935 61.111 3.68 0.00 44.34 4.57
3860 10637 2.424302 GCGTAGGTGTGGTGGTGT 59.576 61.111 0.00 0.00 0.00 4.16
3861 10638 1.959226 GCGTAGGTGTGGTGGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
3862 10639 1.743391 CGTAGGTGTGGTGGTGTGA 59.257 57.895 0.00 0.00 0.00 3.58
3863 10640 0.105224 CGTAGGTGTGGTGGTGTGAA 59.895 55.000 0.00 0.00 0.00 3.18
3864 10641 1.473610 CGTAGGTGTGGTGGTGTGAAA 60.474 52.381 0.00 0.00 0.00 2.69
3865 10642 1.944709 GTAGGTGTGGTGGTGTGAAAC 59.055 52.381 0.00 0.00 37.35 2.78
3866 10643 0.623723 AGGTGTGGTGGTGTGAAACT 59.376 50.000 0.00 0.00 38.04 2.66
3867 10644 0.738389 GGTGTGGTGGTGTGAAACTG 59.262 55.000 0.00 0.00 38.04 3.16
3874 10651 2.687935 GGTGGTGTGAAACTGTGAATGT 59.312 45.455 0.00 0.00 38.04 2.71
4178 10955 8.779303 TGTGACATTTGGTACATTTACTGTTAG 58.221 33.333 0.00 0.00 39.30 2.34
4186 10963 6.816640 TGGTACATTTACTGTTAGATCAGTGC 59.183 38.462 9.21 0.00 46.36 4.40
4291 11078 7.931407 TCTTTGAGCTTTGACATACTGAACTTA 59.069 33.333 0.00 0.00 0.00 2.24
4301 11088 7.615403 TGACATACTGAACTTAAGCATCTTCT 58.385 34.615 1.29 0.00 0.00 2.85
4482 11269 3.541996 TCTTGCGCTCTTCCAATATGA 57.458 42.857 9.73 0.00 0.00 2.15
4572 11359 0.179045 AACTCGTGCTTTCACAGGCT 60.179 50.000 0.00 0.00 43.28 4.58
4815 11604 4.416848 AGGCACTCCCTATTTTATCACCAT 59.583 41.667 0.00 0.00 44.08 3.55
5034 12398 1.833630 TGATGCCACACCAAACCAAAA 59.166 42.857 0.00 0.00 0.00 2.44
5065 12430 1.613317 CCTCAGTCGGCACCATACCA 61.613 60.000 0.00 0.00 0.00 3.25
5168 12533 3.188048 GCATCTCACTGAACCTTGTTGAG 59.812 47.826 0.00 0.00 0.00 3.02
5269 13584 8.039538 ACTACTGGTACTATTTAGACTTTTGGC 58.960 37.037 0.00 0.00 0.00 4.52
5371 13686 3.471680 ACTCTTGAGTTTTGCTCCTGAC 58.528 45.455 0.00 0.00 43.48 3.51
5444 13759 1.302993 TTACGTTGGAAGGCTGGGC 60.303 57.895 0.00 0.00 0.00 5.36
5513 13828 2.202395 GCAGCAGGCCAAGTTTCCA 61.202 57.895 5.01 0.00 36.11 3.53
5543 13860 3.185203 ACAGGGCTGCCTTTCCCA 61.185 61.111 19.68 0.00 45.07 4.37
5546 13863 2.830370 GGGCTGCCTTTCCCATCG 60.830 66.667 19.68 0.00 42.18 3.84
5554 13871 1.476833 GCCTTTCCCATCGGATAAGCA 60.477 52.381 0.00 0.00 38.24 3.91
5615 13932 1.383109 ATCGGGAGCCACCATCTCA 60.383 57.895 0.09 0.00 41.20 3.27
5624 13941 1.753141 GCCACCATCTCATTCTGGCAT 60.753 52.381 2.06 0.00 45.75 4.40
5705 14022 1.069823 AGAGGGCACAATCTATCGCTG 59.930 52.381 0.00 0.00 0.00 5.18
5768 14085 1.393883 GAAAATCCGACCGCTCAAGTC 59.606 52.381 0.00 0.00 0.00 3.01
5783 14100 3.930336 TCAAGTCTTGGCTGACTATGTG 58.070 45.455 12.66 8.75 45.49 3.21
5883 14200 2.440796 AATACTCGGCCCGGACGA 60.441 61.111 16.33 16.33 42.47 4.20
5888 14205 4.511246 TCGGCCCGGACGACCTAT 62.511 66.667 12.64 0.00 38.55 2.57
5942 14259 4.380531 ACCACAATATGCTAATCTGGTCG 58.619 43.478 0.00 0.00 0.00 4.79
6104 14424 2.224113 ACACCTTTTTGCTCAATGCCAG 60.224 45.455 0.00 0.00 42.00 4.85
6157 14477 1.336702 GCGGTTCCATGCACAAATCAA 60.337 47.619 0.00 0.00 0.00 2.57
6160 14480 2.612721 GGTTCCATGCACAAATCAACCC 60.613 50.000 0.00 0.00 0.00 4.11
6413 14745 2.520982 ATGCCGCCGGACTAGCTA 60.521 61.111 7.68 0.00 0.00 3.32
6509 14859 1.414919 ACGCTTCTGGACCTTGTAACA 59.585 47.619 0.00 0.00 0.00 2.41
6536 14888 3.375299 CGTCTTGGCCTTTCTCTTATTGG 59.625 47.826 3.32 0.00 0.00 3.16
7049 15439 1.737793 CATCAGGAAGTTGTAACCGCC 59.262 52.381 0.00 0.00 0.00 6.13
7198 15600 2.558554 CTACCGCACACTTCTCCCCG 62.559 65.000 0.00 0.00 0.00 5.73
7199 15601 3.691342 CCGCACACTTCTCCCCGA 61.691 66.667 0.00 0.00 0.00 5.14
7256 15658 1.820056 CAGATCTGCTGCAGCCCAG 60.820 63.158 34.64 25.71 44.67 4.45
7267 15669 2.116125 AGCCCAGCCCTTGAACAC 59.884 61.111 0.00 0.00 0.00 3.32
7396 15798 1.745653 GCAGTACCATTCCTTGCTTCC 59.254 52.381 0.00 0.00 0.00 3.46
7413 15815 1.512734 CCGCAATCGCAAAGCTCAC 60.513 57.895 0.00 0.00 38.40 3.51
7492 15894 0.620556 CTGACCTACAGCCACCCAAT 59.379 55.000 0.00 0.00 39.86 3.16
7552 15954 1.215647 GCAGTGGGTCCTACGTCAG 59.784 63.158 0.00 0.00 0.00 3.51
7553 15955 1.248785 GCAGTGGGTCCTACGTCAGA 61.249 60.000 0.00 0.00 0.00 3.27
7557 15959 0.994247 TGGGTCCTACGTCAGAGGTA 59.006 55.000 0.00 3.01 35.40 3.08
7558 15960 1.355381 TGGGTCCTACGTCAGAGGTAA 59.645 52.381 4.57 0.00 35.40 2.85
7561 15963 3.367806 GGGTCCTACGTCAGAGGTAAAAC 60.368 52.174 4.57 5.58 35.40 2.43
7580 15982 4.431131 CATGGCACCGGGAAGGCT 62.431 66.667 6.32 0.00 46.52 4.58
7610 16012 2.158769 TGGATGATGGCATGTAGTCCAC 60.159 50.000 3.81 0.00 34.81 4.02
7611 16013 2.498167 GATGATGGCATGTAGTCCACC 58.502 52.381 3.81 0.00 34.81 4.61
7618 16020 2.354403 GGCATGTAGTCCACCGTAGTTT 60.354 50.000 0.00 0.00 0.00 2.66
7625 16027 0.104487 TCCACCGTAGTTTTGTGCGA 59.896 50.000 0.00 0.00 0.00 5.10
7629 16031 2.092211 CACCGTAGTTTTGTGCGATCTC 59.908 50.000 0.00 0.00 0.00 2.75
7640 16042 1.131883 GTGCGATCTCTGCAAAGCATT 59.868 47.619 0.00 0.00 45.23 3.56
7650 16052 4.973396 TCTGCAAAGCATTCGTTCTAATG 58.027 39.130 0.00 0.00 38.13 1.90
7664 16066 4.438744 CGTTCTAATGGTTTGCAAGGATCC 60.439 45.833 2.48 2.48 0.00 3.36
7665 16067 4.591321 TCTAATGGTTTGCAAGGATCCT 57.409 40.909 9.02 9.02 0.00 3.24
7669 16071 1.244019 GGTTTGCAAGGATCCTGCGT 61.244 55.000 17.02 0.00 0.00 5.24
7670 16072 1.448985 GTTTGCAAGGATCCTGCGTA 58.551 50.000 17.02 6.58 0.00 4.42
7671 16073 1.398390 GTTTGCAAGGATCCTGCGTAG 59.602 52.381 17.02 4.59 0.00 3.51
7672 16074 0.613260 TTGCAAGGATCCTGCGTAGT 59.387 50.000 17.02 0.00 0.00 2.73
7675 16077 2.202566 GCAAGGATCCTGCGTAGTTAC 58.797 52.381 17.02 0.00 0.00 2.50
7689 16091 3.423206 CGTAGTTACCGTGTCTGTGTTTC 59.577 47.826 0.00 0.00 0.00 2.78
7723 16125 2.783609 AGTGTCTGCTCAATGCTCAT 57.216 45.000 0.00 0.00 43.37 2.90
7735 16137 5.758924 CTCAATGCTCATTATGATGGTGTG 58.241 41.667 0.00 0.00 33.93 3.82
7745 16147 7.742767 TCATTATGATGGTGTGAGAATCATCT 58.257 34.615 0.89 0.00 39.75 2.90
7746 16148 8.215736 TCATTATGATGGTGTGAGAATCATCTT 58.784 33.333 0.89 0.00 39.75 2.40
7808 16214 6.888105 TCCTGTGCTATCATTCTGATGTTAA 58.112 36.000 0.00 0.00 37.70 2.01
7877 16289 4.827284 CCCTGCTTTCCTTTTTCACTAGAA 59.173 41.667 0.00 0.00 0.00 2.10
7898 16310 9.681692 CTAGAATTGATCAACAGATAGACAGAG 57.318 37.037 11.07 0.00 0.00 3.35
7939 16351 4.453819 CAGAAAGATCTTGCTTCGTTTCCT 59.546 41.667 13.76 0.00 32.03 3.36
7952 16364 1.814793 GTTTCCTCCTGAGCAACTCC 58.185 55.000 0.00 0.00 0.00 3.85
7953 16365 1.349357 GTTTCCTCCTGAGCAACTCCT 59.651 52.381 0.00 0.00 0.00 3.69
7954 16366 1.734655 TTCCTCCTGAGCAACTCCTT 58.265 50.000 0.00 0.00 0.00 3.36
7955 16367 0.979665 TCCTCCTGAGCAACTCCTTG 59.020 55.000 0.00 0.00 0.00 3.61
7974 16386 3.221222 GGAGTCCGACCCTCCATG 58.779 66.667 9.32 0.00 46.46 3.66
7975 16387 1.381327 GGAGTCCGACCCTCCATGA 60.381 63.158 9.32 0.00 46.46 3.07
7976 16388 0.760945 GGAGTCCGACCCTCCATGAT 60.761 60.000 9.32 0.00 46.46 2.45
7977 16389 1.123928 GAGTCCGACCCTCCATGATT 58.876 55.000 0.00 0.00 0.00 2.57
7978 16390 0.833287 AGTCCGACCCTCCATGATTG 59.167 55.000 0.00 0.00 0.00 2.67
7979 16391 0.541863 GTCCGACCCTCCATGATTGT 59.458 55.000 0.00 0.00 0.00 2.71
7980 16392 0.830648 TCCGACCCTCCATGATTGTC 59.169 55.000 0.00 0.00 0.00 3.18
7981 16393 0.541392 CCGACCCTCCATGATTGTCA 59.459 55.000 0.00 0.00 0.00 3.58
7982 16394 1.473965 CCGACCCTCCATGATTGTCAG 60.474 57.143 0.00 0.00 0.00 3.51
7983 16395 1.208052 CGACCCTCCATGATTGTCAGT 59.792 52.381 0.00 0.00 0.00 3.41
7984 16396 2.355108 CGACCCTCCATGATTGTCAGTT 60.355 50.000 0.00 0.00 0.00 3.16
7985 16397 3.690460 GACCCTCCATGATTGTCAGTTT 58.310 45.455 0.00 0.00 0.00 2.66
7986 16398 3.424703 ACCCTCCATGATTGTCAGTTTG 58.575 45.455 0.00 0.00 0.00 2.93
7987 16399 3.181429 ACCCTCCATGATTGTCAGTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
7988 16400 3.441572 CCCTCCATGATTGTCAGTTTGTC 59.558 47.826 0.00 0.00 0.00 3.18
7989 16401 4.074259 CCTCCATGATTGTCAGTTTGTCA 58.926 43.478 0.00 0.00 0.00 3.58
7990 16402 4.520111 CCTCCATGATTGTCAGTTTGTCAA 59.480 41.667 0.00 0.00 30.75 3.18
7991 16403 5.184479 CCTCCATGATTGTCAGTTTGTCAAT 59.816 40.000 0.00 2.08 38.46 2.57
7992 16404 6.294899 CCTCCATGATTGTCAGTTTGTCAATT 60.295 38.462 0.00 0.00 36.53 2.32
7993 16405 7.094248 CCTCCATGATTGTCAGTTTGTCAATTA 60.094 37.037 0.00 1.03 36.53 1.40
7994 16406 8.352137 TCCATGATTGTCAGTTTGTCAATTAT 57.648 30.769 0.00 2.96 36.53 1.28
7995 16407 8.805175 TCCATGATTGTCAGTTTGTCAATTATT 58.195 29.630 0.00 0.00 36.53 1.40
7996 16408 8.865978 CCATGATTGTCAGTTTGTCAATTATTG 58.134 33.333 0.00 0.00 36.53 1.90
7997 16409 9.414295 CATGATTGTCAGTTTGTCAATTATTGT 57.586 29.630 4.77 0.00 36.53 2.71
7998 16410 8.800231 TGATTGTCAGTTTGTCAATTATTGTG 57.200 30.769 4.77 0.00 36.53 3.33
7999 16411 8.412456 TGATTGTCAGTTTGTCAATTATTGTGT 58.588 29.630 4.77 0.00 36.53 3.72
8000 16412 7.984002 TTGTCAGTTTGTCAATTATTGTGTG 57.016 32.000 4.77 0.00 0.00 3.82
8001 16413 6.502652 TGTCAGTTTGTCAATTATTGTGTGG 58.497 36.000 4.77 0.00 0.00 4.17
8002 16414 6.096141 TGTCAGTTTGTCAATTATTGTGTGGT 59.904 34.615 4.77 0.00 0.00 4.16
8003 16415 7.283354 TGTCAGTTTGTCAATTATTGTGTGGTA 59.717 33.333 4.77 0.00 0.00 3.25
8004 16416 8.296713 GTCAGTTTGTCAATTATTGTGTGGTAT 58.703 33.333 4.77 0.00 0.00 2.73
8005 16417 8.511321 TCAGTTTGTCAATTATTGTGTGGTATC 58.489 33.333 4.77 0.00 0.00 2.24
8006 16418 8.514594 CAGTTTGTCAATTATTGTGTGGTATCT 58.485 33.333 4.77 0.00 0.00 1.98
8007 16419 9.733556 AGTTTGTCAATTATTGTGTGGTATCTA 57.266 29.630 4.77 0.00 0.00 1.98
8014 16426 9.248291 CAATTATTGTGTGGTATCTATTTTGGC 57.752 33.333 0.00 0.00 0.00 4.52
8015 16427 8.766994 ATTATTGTGTGGTATCTATTTTGGCT 57.233 30.769 0.00 0.00 0.00 4.75
8016 16428 8.588290 TTATTGTGTGGTATCTATTTTGGCTT 57.412 30.769 0.00 0.00 0.00 4.35
8017 16429 6.509418 TTGTGTGGTATCTATTTTGGCTTC 57.491 37.500 0.00 0.00 0.00 3.86
8018 16430 5.565509 TGTGTGGTATCTATTTTGGCTTCA 58.434 37.500 0.00 0.00 0.00 3.02
8019 16431 6.186957 TGTGTGGTATCTATTTTGGCTTCAT 58.813 36.000 0.00 0.00 0.00 2.57
8020 16432 6.095300 TGTGTGGTATCTATTTTGGCTTCATG 59.905 38.462 0.00 0.00 0.00 3.07
8021 16433 5.067674 TGTGGTATCTATTTTGGCTTCATGC 59.932 40.000 0.00 0.00 41.94 4.06
8030 16442 3.348236 GCTTCATGCCATAGCCCG 58.652 61.111 0.00 0.00 38.69 6.13
8031 16443 1.526917 GCTTCATGCCATAGCCCGT 60.527 57.895 0.00 0.00 38.69 5.28
8032 16444 1.510480 GCTTCATGCCATAGCCCGTC 61.510 60.000 0.00 0.00 38.69 4.79
8033 16445 1.224069 CTTCATGCCATAGCCCGTCG 61.224 60.000 0.00 0.00 38.69 5.12
8034 16446 1.966901 TTCATGCCATAGCCCGTCGT 61.967 55.000 0.00 0.00 38.69 4.34
8035 16447 2.108976 ATGCCATAGCCCGTCGTG 59.891 61.111 0.00 0.00 38.69 4.35
8036 16448 3.460672 ATGCCATAGCCCGTCGTGG 62.461 63.158 0.00 0.00 38.69 4.94
8044 16456 4.104143 CCCGTCGTGGCTTGTATC 57.896 61.111 0.00 0.00 35.87 2.24
8045 16457 1.876714 CCCGTCGTGGCTTGTATCG 60.877 63.158 0.00 0.00 35.87 2.92
8046 16458 1.138036 CCGTCGTGGCTTGTATCGA 59.862 57.895 0.00 0.00 0.00 3.59
8047 16459 0.457166 CCGTCGTGGCTTGTATCGAA 60.457 55.000 0.00 0.00 34.23 3.71
8048 16460 0.638746 CGTCGTGGCTTGTATCGAAC 59.361 55.000 0.00 0.00 34.23 3.95
8049 16461 0.997196 GTCGTGGCTTGTATCGAACC 59.003 55.000 0.00 0.00 34.23 3.62
8050 16462 0.892755 TCGTGGCTTGTATCGAACCT 59.107 50.000 0.00 0.00 0.00 3.50
8051 16463 1.274167 TCGTGGCTTGTATCGAACCTT 59.726 47.619 0.00 0.00 0.00 3.50
8052 16464 2.073816 CGTGGCTTGTATCGAACCTTT 58.926 47.619 0.00 0.00 0.00 3.11
8053 16465 2.482721 CGTGGCTTGTATCGAACCTTTT 59.517 45.455 0.00 0.00 0.00 2.27
8054 16466 3.058501 CGTGGCTTGTATCGAACCTTTTT 60.059 43.478 0.00 0.00 0.00 1.94
8055 16467 4.152759 CGTGGCTTGTATCGAACCTTTTTA 59.847 41.667 0.00 0.00 0.00 1.52
8056 16468 5.163794 CGTGGCTTGTATCGAACCTTTTTAT 60.164 40.000 0.00 0.00 0.00 1.40
8057 16469 6.255950 GTGGCTTGTATCGAACCTTTTTATC 58.744 40.000 0.00 0.00 0.00 1.75
8058 16470 6.093633 GTGGCTTGTATCGAACCTTTTTATCT 59.906 38.462 0.00 0.00 0.00 1.98
8059 16471 6.657541 TGGCTTGTATCGAACCTTTTTATCTT 59.342 34.615 0.00 0.00 0.00 2.40
8060 16472 7.175990 TGGCTTGTATCGAACCTTTTTATCTTT 59.824 33.333 0.00 0.00 0.00 2.52
8061 16473 8.671028 GGCTTGTATCGAACCTTTTTATCTTTA 58.329 33.333 0.00 0.00 0.00 1.85
8068 16480 8.964420 TCGAACCTTTTTATCTTTATTTGCTG 57.036 30.769 0.00 0.00 0.00 4.41
8069 16481 8.573035 TCGAACCTTTTTATCTTTATTTGCTGT 58.427 29.630 0.00 0.00 0.00 4.40
8070 16482 9.834628 CGAACCTTTTTATCTTTATTTGCTGTA 57.165 29.630 0.00 0.00 0.00 2.74
8077 16489 9.847706 TTTTATCTTTATTTGCTGTATTTGCGA 57.152 25.926 0.00 0.00 0.00 5.10
8078 16490 8.835467 TTATCTTTATTTGCTGTATTTGCGAC 57.165 30.769 0.00 0.00 0.00 5.19
8079 16491 6.494893 TCTTTATTTGCTGTATTTGCGACT 57.505 33.333 0.00 0.00 0.00 4.18
8080 16492 6.908825 TCTTTATTTGCTGTATTTGCGACTT 58.091 32.000 0.00 0.00 0.00 3.01
8081 16493 7.021196 TCTTTATTTGCTGTATTTGCGACTTC 58.979 34.615 0.00 0.00 0.00 3.01
8082 16494 2.873170 TTGCTGTATTTGCGACTTCG 57.127 45.000 0.00 0.00 43.27 3.79
8083 16495 1.075542 TGCTGTATTTGCGACTTCGG 58.924 50.000 0.02 0.00 40.23 4.30
8084 16496 1.076332 GCTGTATTTGCGACTTCGGT 58.924 50.000 0.02 0.00 40.23 4.69
8085 16497 1.463444 GCTGTATTTGCGACTTCGGTT 59.537 47.619 0.02 0.00 40.23 4.44
8086 16498 2.095919 GCTGTATTTGCGACTTCGGTTT 60.096 45.455 0.02 0.00 40.23 3.27
8087 16499 3.479006 CTGTATTTGCGACTTCGGTTTG 58.521 45.455 0.02 0.00 40.23 2.93
8088 16500 2.873472 TGTATTTGCGACTTCGGTTTGT 59.127 40.909 0.02 0.00 40.23 2.83
8089 16501 4.056740 TGTATTTGCGACTTCGGTTTGTA 58.943 39.130 0.02 0.00 40.23 2.41
8090 16502 4.510711 TGTATTTGCGACTTCGGTTTGTAA 59.489 37.500 0.02 0.00 40.23 2.41
8091 16503 4.555348 ATTTGCGACTTCGGTTTGTAAA 57.445 36.364 0.02 0.00 40.23 2.01
8092 16504 3.322230 TTGCGACTTCGGTTTGTAAAC 57.678 42.857 0.02 0.00 40.23 2.01
8093 16505 1.258458 TGCGACTTCGGTTTGTAAACG 59.742 47.619 0.02 0.00 39.77 3.60
8094 16506 1.928276 CGACTTCGGTTTGTAAACGC 58.072 50.000 1.80 0.00 39.77 4.84
8095 16507 1.523934 CGACTTCGGTTTGTAAACGCT 59.476 47.619 1.80 0.00 39.77 5.07
8096 16508 2.725723 CGACTTCGGTTTGTAAACGCTA 59.274 45.455 1.80 0.00 39.77 4.26
8097 16509 3.365820 CGACTTCGGTTTGTAAACGCTAT 59.634 43.478 1.80 0.00 39.77 2.97
8098 16510 4.558470 CGACTTCGGTTTGTAAACGCTATA 59.442 41.667 1.80 0.00 39.77 1.31
8099 16511 5.060816 CGACTTCGGTTTGTAAACGCTATAA 59.939 40.000 1.80 0.00 39.77 0.98
8100 16512 6.399204 ACTTCGGTTTGTAAACGCTATAAG 57.601 37.500 1.80 0.00 39.77 1.73
8101 16513 5.349543 ACTTCGGTTTGTAAACGCTATAAGG 59.650 40.000 1.80 0.00 39.77 2.69
8102 16514 3.618150 TCGGTTTGTAAACGCTATAAGGC 59.382 43.478 1.80 0.00 39.77 4.35
8103 16515 3.242511 CGGTTTGTAAACGCTATAAGGCC 60.243 47.826 0.00 0.00 39.77 5.19
8104 16516 3.943381 GGTTTGTAAACGCTATAAGGCCT 59.057 43.478 0.00 0.00 39.77 5.19
8105 16517 4.397103 GGTTTGTAAACGCTATAAGGCCTT 59.603 41.667 24.18 24.18 39.77 4.35
8106 16518 5.448225 GGTTTGTAAACGCTATAAGGCCTTC 60.448 44.000 24.49 6.55 39.77 3.46
8107 16519 4.475051 TGTAAACGCTATAAGGCCTTCA 57.525 40.909 24.49 10.58 0.00 3.02
8108 16520 4.439057 TGTAAACGCTATAAGGCCTTCAG 58.561 43.478 24.49 20.82 0.00 3.02
8109 16521 3.629142 AAACGCTATAAGGCCTTCAGT 57.371 42.857 24.49 12.92 0.00 3.41
8110 16522 3.629142 AACGCTATAAGGCCTTCAGTT 57.371 42.857 24.49 17.87 0.00 3.16
8111 16523 3.180891 ACGCTATAAGGCCTTCAGTTC 57.819 47.619 24.49 7.90 0.00 3.01
8112 16524 2.128035 CGCTATAAGGCCTTCAGTTCG 58.872 52.381 24.49 16.01 0.00 3.95
8113 16525 1.867865 GCTATAAGGCCTTCAGTTCGC 59.132 52.381 24.49 13.24 0.00 4.70
8114 16526 2.483889 GCTATAAGGCCTTCAGTTCGCT 60.484 50.000 24.49 0.00 0.00 4.93
8115 16527 3.243771 GCTATAAGGCCTTCAGTTCGCTA 60.244 47.826 24.49 0.18 0.00 4.26
8116 16528 3.906720 ATAAGGCCTTCAGTTCGCTAA 57.093 42.857 24.49 0.00 0.00 3.09
8117 16529 2.561478 AAGGCCTTCAGTTCGCTAAA 57.439 45.000 13.78 0.00 0.00 1.85
8118 16530 2.100605 AGGCCTTCAGTTCGCTAAAG 57.899 50.000 0.00 0.00 0.00 1.85
8119 16531 1.623811 AGGCCTTCAGTTCGCTAAAGA 59.376 47.619 0.00 0.00 0.00 2.52
8120 16532 2.237392 AGGCCTTCAGTTCGCTAAAGAT 59.763 45.455 0.00 0.00 0.00 2.40
8121 16533 2.352960 GGCCTTCAGTTCGCTAAAGATG 59.647 50.000 0.00 0.00 0.00 2.90
8122 16534 2.352960 GCCTTCAGTTCGCTAAAGATGG 59.647 50.000 0.00 0.00 0.00 3.51
8123 16535 2.939103 CCTTCAGTTCGCTAAAGATGGG 59.061 50.000 0.00 0.00 0.00 4.00
8124 16536 2.024176 TCAGTTCGCTAAAGATGGGC 57.976 50.000 0.00 0.00 0.00 5.36
8125 16537 1.277842 TCAGTTCGCTAAAGATGGGCA 59.722 47.619 0.00 0.00 0.00 5.36
8126 16538 2.083774 CAGTTCGCTAAAGATGGGCAA 58.916 47.619 0.00 0.00 0.00 4.52
8127 16539 2.096496 CAGTTCGCTAAAGATGGGCAAG 59.904 50.000 0.00 0.00 0.00 4.01
8128 16540 2.084546 GTTCGCTAAAGATGGGCAAGT 58.915 47.619 0.00 0.00 0.00 3.16
8129 16541 1.737838 TCGCTAAAGATGGGCAAGTG 58.262 50.000 0.00 0.00 0.00 3.16
8130 16542 0.099436 CGCTAAAGATGGGCAAGTGC 59.901 55.000 0.00 0.00 41.14 4.40
8131 16543 1.176527 GCTAAAGATGGGCAAGTGCA 58.823 50.000 5.52 0.00 44.36 4.57
8132 16544 1.753073 GCTAAAGATGGGCAAGTGCAT 59.247 47.619 5.52 0.00 44.36 3.96
8133 16545 2.223665 GCTAAAGATGGGCAAGTGCATC 60.224 50.000 5.52 0.76 44.36 3.91
8134 16546 2.226962 AAAGATGGGCAAGTGCATCT 57.773 45.000 5.52 3.15 44.36 2.90
8135 16547 2.226962 AAGATGGGCAAGTGCATCTT 57.773 45.000 11.22 11.22 44.36 2.40
8136 16548 3.370840 AAGATGGGCAAGTGCATCTTA 57.629 42.857 14.08 0.00 40.07 2.10
8137 16549 3.370840 AGATGGGCAAGTGCATCTTAA 57.629 42.857 5.52 0.00 44.36 1.85
8138 16550 3.700538 AGATGGGCAAGTGCATCTTAAA 58.299 40.909 5.52 0.00 44.36 1.52
8139 16551 4.088634 AGATGGGCAAGTGCATCTTAAAA 58.911 39.130 5.52 0.00 44.36 1.52
8140 16552 4.527816 AGATGGGCAAGTGCATCTTAAAAA 59.472 37.500 5.52 0.00 44.36 1.94
8171 16583 5.837979 TCCTGAAAACCAATTCAATCTTGGA 59.162 36.000 8.96 0.00 44.95 3.53
8207 16619 2.942796 CGTCTACACCAGGGCTGCA 61.943 63.158 0.50 0.00 0.00 4.41
8209 16621 0.035056 GTCTACACCAGGGCTGCATT 60.035 55.000 0.50 0.00 0.00 3.56
8212 16624 0.403655 TACACCAGGGCTGCATTTGA 59.596 50.000 0.50 0.00 0.00 2.69
8225 16637 6.319405 GGGCTGCATTTGAAAATATTCCAAAT 59.681 34.615 16.66 16.66 34.49 2.32
8229 16641 8.266392 TGCATTTGAAAATATTCCAAATGGAC 57.734 30.769 31.32 23.86 45.39 4.02
8233 16645 7.903995 TTGAAAATATTCCAAATGGACTTGC 57.096 32.000 0.54 0.00 45.39 4.01
8234 16646 6.405538 TGAAAATATTCCAAATGGACTTGCC 58.594 36.000 0.54 0.00 45.39 4.52
8235 16647 4.654091 AATATTCCAAATGGACTTGCCG 57.346 40.909 0.54 0.00 45.39 5.69
8236 16648 0.532115 ATTCCAAATGGACTTGCCGC 59.468 50.000 0.54 0.00 45.39 6.53
8238 16650 0.611618 TCCAAATGGACTTGCCGCAT 60.612 50.000 0.00 0.00 39.78 4.73
8239 16651 0.179129 CCAAATGGACTTGCCGCATC 60.179 55.000 0.00 0.00 40.66 3.91
8240 16652 0.527113 CAAATGGACTTGCCGCATCA 59.473 50.000 0.00 0.00 40.66 3.07
8241 16653 0.527565 AAATGGACTTGCCGCATCAC 59.472 50.000 0.00 0.00 40.66 3.06
8242 16654 0.322816 AATGGACTTGCCGCATCACT 60.323 50.000 0.00 0.00 40.66 3.41
8243 16655 0.541392 ATGGACTTGCCGCATCACTA 59.459 50.000 0.00 0.00 40.66 2.74
8244 16656 0.541392 TGGACTTGCCGCATCACTAT 59.459 50.000 0.00 0.00 40.66 2.12
8264 16810 1.347707 TGCTGTTAAGGTCCAGGACAG 59.652 52.381 21.75 10.38 40.40 3.51
8269 16815 0.617820 TAAGGTCCAGGACAGCCCTC 60.618 60.000 21.75 2.50 45.60 4.30
8270 16816 2.607750 GGTCCAGGACAGCCCTCA 60.608 66.667 21.75 0.00 45.60 3.86
8290 16836 4.682787 TCATGAAGCCAAGTACTATGTCG 58.317 43.478 0.00 0.00 0.00 4.35
8368 16932 1.518903 GGCTGTTTGCTTTCTCGGCT 61.519 55.000 0.00 0.00 42.39 5.52
8378 16942 4.253685 TGCTTTCTCGGCTATATTATGCC 58.746 43.478 0.00 0.00 45.25 4.40
8379 16943 3.623510 GCTTTCTCGGCTATATTATGCCC 59.376 47.826 9.92 0.17 45.90 5.36
8380 16944 3.520290 TTCTCGGCTATATTATGCCCG 57.480 47.619 9.34 9.34 45.90 6.13
8381 16945 1.754803 TCTCGGCTATATTATGCCCGG 59.245 52.381 13.45 0.00 45.90 5.73
8382 16946 0.177141 TCGGCTATATTATGCCCGGC 59.823 55.000 1.04 1.04 45.90 6.13
8393 17476 2.512515 GCCCGGCTCATCAGTGTC 60.513 66.667 0.71 0.00 0.00 3.67
8398 17481 2.125912 GCTCATCAGTGTCCGCGT 60.126 61.111 4.92 0.00 0.00 6.01
8400 17483 0.249073 GCTCATCAGTGTCCGCGTAT 60.249 55.000 4.92 0.00 0.00 3.06
8405 17488 2.838386 TCAGTGTCCGCGTATTAGTC 57.162 50.000 4.92 0.00 0.00 2.59
8409 17492 1.027357 TGTCCGCGTATTAGTCCTCC 58.973 55.000 4.92 0.00 0.00 4.30
8415 17498 3.345414 CGCGTATTAGTCCTCCCTATCT 58.655 50.000 0.00 0.00 0.00 1.98
8418 17501 5.251764 GCGTATTAGTCCTCCCTATCTGTA 58.748 45.833 0.00 0.00 0.00 2.74
8419 17502 5.354792 GCGTATTAGTCCTCCCTATCTGTAG 59.645 48.000 0.00 0.00 0.00 2.74
8422 17505 3.495434 AGTCCTCCCTATCTGTAGACG 57.505 52.381 0.00 0.00 0.00 4.18
8423 17506 2.106857 AGTCCTCCCTATCTGTAGACGG 59.893 54.545 0.00 0.00 0.00 4.79
8424 17507 1.424302 TCCTCCCTATCTGTAGACGGG 59.576 57.143 10.39 10.39 38.68 5.28
8425 17508 1.145325 CCTCCCTATCTGTAGACGGGT 59.855 57.143 14.34 0.00 38.54 5.28
8427 17510 0.674534 CCCTATCTGTAGACGGGTGC 59.325 60.000 9.02 0.00 34.91 5.01
8428 17511 0.311165 CCTATCTGTAGACGGGTGCG 59.689 60.000 0.00 0.00 0.00 5.34
8449 17535 1.132640 GTCCGATTTGCACGTCAGC 59.867 57.895 0.00 0.00 0.00 4.26
8450 17536 1.005037 TCCGATTTGCACGTCAGCT 60.005 52.632 0.00 0.00 34.99 4.24
8455 17541 0.593128 ATTTGCACGTCAGCTTGGAC 59.407 50.000 0.00 0.00 34.99 4.02
8487 17583 1.330306 CAGCGCAAAGAACAAATCGG 58.670 50.000 11.47 0.00 0.00 4.18
8490 17586 1.135803 GCGCAAAGAACAAATCGGCTA 60.136 47.619 0.30 0.00 0.00 3.93
8494 17590 4.621034 CGCAAAGAACAAATCGGCTAAAAT 59.379 37.500 0.00 0.00 0.00 1.82
8495 17591 5.118510 CGCAAAGAACAAATCGGCTAAAATT 59.881 36.000 0.00 0.00 0.00 1.82
8526 17626 7.013846 TGAGTCGACTGACCCAAAAATTAAAAT 59.986 33.333 25.58 0.00 46.74 1.82
8529 17629 7.650104 GTCGACTGACCCAAAAATTAAAATCAA 59.350 33.333 8.70 0.00 39.30 2.57
8556 17656 4.957954 ACTTGCACATTGTTGATCCCATAT 59.042 37.500 0.00 0.00 0.00 1.78
8560 17660 6.128486 TGCACATTGTTGATCCCATATTAGT 58.872 36.000 0.00 0.00 0.00 2.24
8561 17661 6.606796 TGCACATTGTTGATCCCATATTAGTT 59.393 34.615 0.00 0.00 0.00 2.24
8562 17662 7.123997 TGCACATTGTTGATCCCATATTAGTTT 59.876 33.333 0.00 0.00 0.00 2.66
8563 17663 7.981225 GCACATTGTTGATCCCATATTAGTTTT 59.019 33.333 0.00 0.00 0.00 2.43
8564 17664 9.874205 CACATTGTTGATCCCATATTAGTTTTT 57.126 29.630 0.00 0.00 0.00 1.94
8588 17688 6.415798 TTTTAAACAAGGCAAAAGACTTGC 57.584 33.333 10.80 0.78 46.03 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 111 0.398696 TTAACCACGCATCACCCACT 59.601 50.000 0.00 0.00 0.00 4.00
122 132 5.176958 GCGTGCTACATCGGAGTATATTTTT 59.823 40.000 0.00 0.00 0.00 1.94
123 133 4.684703 GCGTGCTACATCGGAGTATATTTT 59.315 41.667 0.00 0.00 0.00 1.82
163 173 1.873698 TAAAATCGCCGCCTATGTCC 58.126 50.000 0.00 0.00 0.00 4.02
173 183 5.582665 ACTTCAGAGTTGAGATAAAATCGCC 59.417 40.000 0.00 0.00 34.15 5.54
186 196 2.289945 CCTCCCCTTGACTTCAGAGTTG 60.290 54.545 0.00 0.00 35.88 3.16
206 217 3.812053 CAGCAGTTTAGCATATGACTCCC 59.188 47.826 6.97 0.00 36.85 4.30
263 279 8.177980 GTACAAACGAAACGATCTTACCTAAT 57.822 34.615 0.00 0.00 0.00 1.73
564 1629 2.089427 CGCGAATGTGCAAGATTTGTTG 59.911 45.455 0.00 0.00 33.70 3.33
664 1747 1.456287 GTGAAGGTGAAGGGTGCCT 59.544 57.895 0.00 0.00 33.87 4.75
712 1796 0.034756 ATTTGGGGGTTTTGCGCTTC 59.965 50.000 9.73 0.00 0.00 3.86
882 1976 4.116328 CGAACTGCTCGGCGAGGA 62.116 66.667 35.03 32.07 44.20 3.71
1224 2335 0.029300 GAACACGCAGCACATGTTGT 59.971 50.000 10.60 0.00 34.17 3.32
1227 2338 0.308684 CTTGAACACGCAGCACATGT 59.691 50.000 0.00 0.00 0.00 3.21
1230 2341 2.715005 GCTTGAACACGCAGCACA 59.285 55.556 0.00 0.00 0.00 4.57
1311 2437 2.626840 GACTTGAGCATCTGGACCTTC 58.373 52.381 0.00 0.00 34.92 3.46
1535 2676 1.468565 CGGCTGTGATTCCTTGCATTG 60.469 52.381 0.00 0.00 0.00 2.82
1565 2706 8.789762 CATTATCATCATCATCTTTACCTGCAA 58.210 33.333 0.00 0.00 0.00 4.08
1617 2767 1.809547 CATAACATGCCACCGTGTTCA 59.190 47.619 4.71 0.00 45.59 3.18
1640 2790 3.213506 ACATGTTCTGTTTGTAGCTGCA 58.786 40.909 0.00 0.00 32.90 4.41
1821 2995 6.183360 CCGGGCCAATTTGAGATAAATTAACT 60.183 38.462 4.39 0.00 0.00 2.24
1905 3079 1.560505 ATGCTAACCTTTGGGCCTTG 58.439 50.000 4.53 0.00 35.63 3.61
1925 3099 9.281371 CAGCTCCTCTTCAATTATGATTTATGA 57.719 33.333 0.00 0.00 34.96 2.15
1926 3100 9.064706 ACAGCTCCTCTTCAATTATGATTTATG 57.935 33.333 0.00 0.00 34.96 1.90
1927 3101 9.638176 AACAGCTCCTCTTCAATTATGATTTAT 57.362 29.630 0.00 0.00 34.96 1.40
1928 3102 9.113838 GAACAGCTCCTCTTCAATTATGATTTA 57.886 33.333 0.00 0.00 34.96 1.40
1929 3103 7.613022 TGAACAGCTCCTCTTCAATTATGATTT 59.387 33.333 0.00 0.00 34.96 2.17
1930 3104 7.114754 TGAACAGCTCCTCTTCAATTATGATT 58.885 34.615 0.00 0.00 34.96 2.57
1931 3105 6.656902 TGAACAGCTCCTCTTCAATTATGAT 58.343 36.000 0.00 0.00 34.96 2.45
2045 3219 4.402056 TTTCTCCAGACAAGACTCGTTT 57.598 40.909 0.00 0.00 0.00 3.60
2178 3352 3.727376 GCGTCTAACGTCCACTTCTCTAC 60.727 52.174 1.14 0.00 44.73 2.59
2324 3510 5.245531 TGCTTTATCGTCAGATTTGGTCTT 58.754 37.500 0.00 0.00 38.26 3.01
2553 3760 5.734720 TGGACTGATCTTTAGAATGTGGTC 58.265 41.667 0.00 0.00 0.00 4.02
2636 3846 3.883489 GCCTTGTCTATGGTTATGGGAAC 59.117 47.826 0.00 0.00 0.00 3.62
2650 8877 2.298158 CTGATACGGCGGCCTTGTCT 62.298 60.000 20.05 4.51 0.00 3.41
2908 9138 3.571401 GCTCAATTGTTCCCTCCCATATG 59.429 47.826 5.13 0.00 0.00 1.78
3022 9259 5.245531 TGTAGTTAACTGGGCATCTCAAAG 58.754 41.667 18.56 0.00 0.00 2.77
3171 9408 3.979495 GCAAAAGAGAAGCAACATGACAG 59.021 43.478 0.00 0.00 0.00 3.51
3256 9493 6.081872 AGAAATTCTTCAAAAGCACTGAGG 57.918 37.500 0.00 0.00 33.64 3.86
3372 10003 9.566432 TCCAATTGCCAATTTTAATTAACAACT 57.434 25.926 0.00 0.00 30.26 3.16
3659 10433 2.484264 GTCTGCCACGTTAGCTTCAAAT 59.516 45.455 8.66 0.00 0.00 2.32
3668 10442 1.175654 TATCACGGTCTGCCACGTTA 58.824 50.000 0.00 0.00 42.04 3.18
3686 10460 2.292257 ACCACTAGACCACAGGCTCATA 60.292 50.000 0.00 0.00 0.00 2.15
3690 10467 1.194781 CCACCACTAGACCACAGGCT 61.195 60.000 0.00 0.00 0.00 4.58
3699 10476 0.259065 ATCTCGCTCCCACCACTAGA 59.741 55.000 0.00 0.00 0.00 2.43
3746 10523 3.810743 GCACACCCTGTCAATTCTAAGGT 60.811 47.826 0.00 0.00 0.00 3.50
3802 10579 3.720193 GCTGGCATGCGCTATCCG 61.720 66.667 12.44 4.68 38.60 4.18
3844 10621 0.105224 TTCACACCACCACACCTACG 59.895 55.000 0.00 0.00 0.00 3.51
3860 10637 4.172505 GCACACAAACATTCACAGTTTCA 58.827 39.130 0.00 0.00 37.10 2.69
3861 10638 3.240401 CGCACACAAACATTCACAGTTTC 59.760 43.478 0.00 0.00 37.10 2.78
3862 10639 3.178267 CGCACACAAACATTCACAGTTT 58.822 40.909 0.00 0.00 39.61 2.66
3863 10640 2.163412 ACGCACACAAACATTCACAGTT 59.837 40.909 0.00 0.00 0.00 3.16
3864 10641 1.742831 ACGCACACAAACATTCACAGT 59.257 42.857 0.00 0.00 0.00 3.55
3865 10642 2.473530 ACGCACACAAACATTCACAG 57.526 45.000 0.00 0.00 0.00 3.66
3866 10643 5.641636 AGATATACGCACACAAACATTCACA 59.358 36.000 0.00 0.00 0.00 3.58
3867 10644 6.106877 AGATATACGCACACAAACATTCAC 57.893 37.500 0.00 0.00 0.00 3.18
3874 10651 4.871557 GGGTACAAGATATACGCACACAAA 59.128 41.667 0.00 0.00 35.97 2.83
3996 10773 7.624360 AAAGATTATGAAATTCGCAGTACCA 57.376 32.000 0.00 0.00 0.00 3.25
4178 10955 9.277783 AGTAAATGGTTCAATATAGCACTGATC 57.722 33.333 0.00 0.00 0.00 2.92
4265 11052 6.291377 AGTTCAGTATGTCAAAGCTCAAAGA 58.709 36.000 0.00 0.00 37.40 2.52
4301 11088 4.275810 AGAGCACCCTAACAGTATCGTAA 58.724 43.478 0.00 0.00 0.00 3.18
4482 11269 5.653769 AGTTGCAGTTGCCATGATAAACTAT 59.346 36.000 1.06 0.00 41.18 2.12
4572 11359 2.559698 TTGGGAGCGATCACAGAAAA 57.440 45.000 5.46 0.00 0.00 2.29
4794 11583 6.547510 AGAAATGGTGATAAAATAGGGAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
5034 12398 3.753797 GCCGACTGAGGAAGAAAGAAAAT 59.246 43.478 0.00 0.00 0.00 1.82
5249 13483 7.064728 CAGTCTGCCAAAAGTCTAAATAGTACC 59.935 40.741 0.00 0.00 0.00 3.34
5269 13584 1.538512 CAATGTGAACAGGGCAGTCTG 59.461 52.381 0.00 0.00 40.40 3.51
5322 13637 5.643777 CAGAAAGGTGTGAAATAGGTACAGG 59.356 44.000 0.00 0.00 0.00 4.00
5513 13828 1.687612 CCCTGTCCATGGCTTGTCT 59.312 57.895 6.96 0.00 0.00 3.41
5554 13871 3.562973 CGCAATGAAGATGCTGTAGGATT 59.437 43.478 0.00 0.00 41.64 3.01
5615 13932 3.559069 CCACCAATGACTATGCCAGAAT 58.441 45.455 0.00 0.00 0.00 2.40
5624 13941 1.557832 GTACCCTGCCACCAATGACTA 59.442 52.381 0.00 0.00 0.00 2.59
5705 14022 2.815211 TCAGCAAGCGCCGTCATC 60.815 61.111 2.29 0.00 39.83 2.92
5726 14043 3.066342 CCTTGATGCATGTGATCCACTTC 59.934 47.826 2.46 0.00 35.11 3.01
5768 14085 1.717937 GCGCACATAGTCAGCCAAG 59.282 57.895 0.30 0.00 0.00 3.61
5783 14100 1.548973 CCGTGATATTCCAGACGCGC 61.549 60.000 5.73 0.00 35.43 6.86
5883 14200 4.463891 CCCTTGAAACAGCATTTGATAGGT 59.536 41.667 0.00 0.00 0.00 3.08
5888 14205 3.831323 TCTCCCTTGAAACAGCATTTGA 58.169 40.909 0.00 0.00 0.00 2.69
6071 14391 2.031495 AAAGGTGTAGGGCAGTCTCT 57.969 50.000 0.00 0.00 0.00 3.10
6104 14424 1.436983 GCCATAGCAAGCGGGTGTAC 61.437 60.000 0.00 0.00 39.53 2.90
6314 14646 1.064946 GACCTCAGTGATCGCCGAG 59.935 63.158 11.83 11.83 0.00 4.63
6446 14780 5.404395 ACTGAAAGGTTAGAGGAGTTAGGT 58.596 41.667 0.00 0.00 39.30 3.08
6577 14929 0.323957 AGCCCTCCTTCCAACGTAAC 59.676 55.000 0.00 0.00 0.00 2.50
6578 14930 0.611714 GAGCCCTCCTTCCAACGTAA 59.388 55.000 0.00 0.00 0.00 3.18
6579 14931 0.252103 AGAGCCCTCCTTCCAACGTA 60.252 55.000 0.00 0.00 0.00 3.57
6580 14932 1.536662 AGAGCCCTCCTTCCAACGT 60.537 57.895 0.00 0.00 0.00 3.99
7049 15439 1.089920 CAAAGCCAGGAGGAACATCG 58.910 55.000 0.00 0.00 36.89 3.84
7198 15600 3.859411 ATTCTCTCACTCGGTCTGTTC 57.141 47.619 0.00 0.00 0.00 3.18
7199 15601 3.574396 TCAATTCTCTCACTCGGTCTGTT 59.426 43.478 0.00 0.00 0.00 3.16
7256 15658 2.700773 GCCATCGGTGTTCAAGGGC 61.701 63.158 0.00 0.00 0.00 5.19
7261 15663 2.431771 CGTCGCCATCGGTGTTCA 60.432 61.111 0.00 0.00 34.40 3.18
7283 15685 2.545952 CGGATCCCATTCTGGTAAGTCG 60.546 54.545 6.06 0.00 35.17 4.18
7552 15954 1.182667 GGTGCCATGGGTTTTACCTC 58.817 55.000 15.13 0.00 38.64 3.85
7553 15955 0.610785 CGGTGCCATGGGTTTTACCT 60.611 55.000 15.13 0.00 38.64 3.08
7557 15959 2.603171 CCCGGTGCCATGGGTTTT 60.603 61.111 15.13 0.00 40.76 2.43
7558 15960 3.153629 TTCCCGGTGCCATGGGTTT 62.154 57.895 15.13 0.00 46.13 3.27
7580 15982 3.833729 CCATCATCCATTGGCTCCA 57.166 52.632 0.00 0.00 0.00 3.86
7603 16005 2.758009 GCACAAAACTACGGTGGACTA 58.242 47.619 0.00 0.00 33.25 2.59
7605 16007 0.233848 CGCACAAAACTACGGTGGAC 59.766 55.000 0.00 0.00 33.25 4.02
7610 16012 2.345641 CAGAGATCGCACAAAACTACGG 59.654 50.000 0.00 0.00 0.00 4.02
7611 16013 2.222596 GCAGAGATCGCACAAAACTACG 60.223 50.000 0.00 0.00 0.00 3.51
7618 16020 0.518636 GCTTTGCAGAGATCGCACAA 59.481 50.000 8.73 0.00 39.59 3.33
7625 16027 3.341823 AGAACGAATGCTTTGCAGAGAT 58.658 40.909 8.73 0.00 43.65 2.75
7629 16031 4.100529 CCATTAGAACGAATGCTTTGCAG 58.899 43.478 0.00 0.00 43.65 4.41
7640 16042 3.745799 TCCTTGCAAACCATTAGAACGA 58.254 40.909 0.00 0.00 0.00 3.85
7650 16052 1.244019 ACGCAGGATCCTTGCAAACC 61.244 55.000 25.86 2.14 0.00 3.27
7664 16066 1.068748 ACAGACACGGTAACTACGCAG 60.069 52.381 0.00 0.00 34.00 5.18
7665 16067 0.953727 ACAGACACGGTAACTACGCA 59.046 50.000 0.00 0.00 34.00 5.24
7669 16071 3.066621 ACGAAACACAGACACGGTAACTA 59.933 43.478 0.00 0.00 0.00 2.24
7670 16072 2.159198 ACGAAACACAGACACGGTAACT 60.159 45.455 0.00 0.00 0.00 2.24
7671 16073 2.195922 ACGAAACACAGACACGGTAAC 58.804 47.619 0.00 0.00 0.00 2.50
7672 16074 2.462889 GACGAAACACAGACACGGTAA 58.537 47.619 0.00 0.00 0.00 2.85
7675 16077 0.528901 TGGACGAAACACAGACACGG 60.529 55.000 0.00 0.00 0.00 4.94
7689 16091 2.681848 AGACACTTACGATAGGTGGACG 59.318 50.000 10.39 0.00 39.78 4.79
7723 16125 7.567458 TCAAGATGATTCTCACACCATCATAA 58.433 34.615 0.00 0.00 37.70 1.90
7735 16137 4.950050 ACCGTACCATCAAGATGATTCTC 58.050 43.478 11.48 0.00 41.20 2.87
7754 16160 5.625721 CAGTAGCAAATAAGATACGAGACCG 59.374 44.000 0.00 0.00 35.64 4.79
7827 16233 8.982091 AGCTCTTGTACTGATTACTATACTCA 57.018 34.615 0.00 0.00 0.00 3.41
7837 16243 2.503356 CAGGGGAGCTCTTGTACTGATT 59.497 50.000 14.64 0.00 0.00 2.57
7877 16289 7.040494 CACACTCTGTCTATCTGTTGATCAAT 58.960 38.462 12.12 0.00 34.32 2.57
7898 16310 4.128925 TCTGAGCTTCATCCATACACAC 57.871 45.455 0.00 0.00 0.00 3.82
7958 16370 1.123928 AATCATGGAGGGTCGGACTC 58.876 55.000 8.23 3.52 0.00 3.36
7959 16371 0.833287 CAATCATGGAGGGTCGGACT 59.167 55.000 8.23 0.00 0.00 3.85
7960 16372 0.541863 ACAATCATGGAGGGTCGGAC 59.458 55.000 0.00 0.00 0.00 4.79
7961 16373 0.830648 GACAATCATGGAGGGTCGGA 59.169 55.000 0.00 0.00 0.00 4.55
7962 16374 0.541392 TGACAATCATGGAGGGTCGG 59.459 55.000 0.00 0.00 0.00 4.79
7963 16375 1.208052 ACTGACAATCATGGAGGGTCG 59.792 52.381 0.00 0.00 0.00 4.79
7964 16376 3.356529 AACTGACAATCATGGAGGGTC 57.643 47.619 0.00 0.00 0.00 4.46
7965 16377 3.181429 ACAAACTGACAATCATGGAGGGT 60.181 43.478 0.00 0.00 0.00 4.34
7966 16378 3.424703 ACAAACTGACAATCATGGAGGG 58.575 45.455 0.00 0.00 0.00 4.30
7967 16379 4.074259 TGACAAACTGACAATCATGGAGG 58.926 43.478 0.00 0.00 0.00 4.30
7968 16380 5.694231 TTGACAAACTGACAATCATGGAG 57.306 39.130 0.00 0.00 27.96 3.86
7969 16381 6.653526 AATTGACAAACTGACAATCATGGA 57.346 33.333 5.13 0.00 40.68 3.41
7970 16382 8.865978 CAATAATTGACAAACTGACAATCATGG 58.134 33.333 5.13 0.00 40.68 3.66
7971 16383 9.414295 ACAATAATTGACAAACTGACAATCATG 57.586 29.630 5.13 7.11 40.68 3.07
7972 16384 9.414295 CACAATAATTGACAAACTGACAATCAT 57.586 29.630 5.13 0.00 40.68 2.45
7973 16385 8.412456 ACACAATAATTGACAAACTGACAATCA 58.588 29.630 5.13 0.00 40.68 2.57
7974 16386 8.693504 CACACAATAATTGACAAACTGACAATC 58.306 33.333 5.13 0.00 40.68 2.67
7975 16387 7.652909 CCACACAATAATTGACAAACTGACAAT 59.347 33.333 0.00 0.00 42.66 2.71
7976 16388 6.977502 CCACACAATAATTGACAAACTGACAA 59.022 34.615 0.00 0.00 36.58 3.18
7977 16389 6.096141 ACCACACAATAATTGACAAACTGACA 59.904 34.615 0.00 0.00 0.00 3.58
7978 16390 6.503524 ACCACACAATAATTGACAAACTGAC 58.496 36.000 0.00 0.00 0.00 3.51
7979 16391 6.707440 ACCACACAATAATTGACAAACTGA 57.293 33.333 0.00 0.00 0.00 3.41
7980 16392 8.514594 AGATACCACACAATAATTGACAAACTG 58.485 33.333 0.00 0.00 0.00 3.16
7981 16393 8.635765 AGATACCACACAATAATTGACAAACT 57.364 30.769 0.00 0.00 0.00 2.66
7988 16400 9.248291 GCCAAAATAGATACCACACAATAATTG 57.752 33.333 0.00 0.00 0.00 2.32
7989 16401 9.200817 AGCCAAAATAGATACCACACAATAATT 57.799 29.630 0.00 0.00 0.00 1.40
7990 16402 8.766994 AGCCAAAATAGATACCACACAATAAT 57.233 30.769 0.00 0.00 0.00 1.28
7991 16403 8.588290 AAGCCAAAATAGATACCACACAATAA 57.412 30.769 0.00 0.00 0.00 1.40
7992 16404 7.831690 TGAAGCCAAAATAGATACCACACAATA 59.168 33.333 0.00 0.00 0.00 1.90
7993 16405 6.663093 TGAAGCCAAAATAGATACCACACAAT 59.337 34.615 0.00 0.00 0.00 2.71
7994 16406 6.007076 TGAAGCCAAAATAGATACCACACAA 58.993 36.000 0.00 0.00 0.00 3.33
7995 16407 5.565509 TGAAGCCAAAATAGATACCACACA 58.434 37.500 0.00 0.00 0.00 3.72
7996 16408 6.498304 CATGAAGCCAAAATAGATACCACAC 58.502 40.000 0.00 0.00 0.00 3.82
7997 16409 5.067674 GCATGAAGCCAAAATAGATACCACA 59.932 40.000 0.00 0.00 37.23 4.17
7998 16410 5.523369 GCATGAAGCCAAAATAGATACCAC 58.477 41.667 0.00 0.00 37.23 4.16
7999 16411 5.772825 GCATGAAGCCAAAATAGATACCA 57.227 39.130 0.00 0.00 37.23 3.25
8013 16425 1.510480 GACGGGCTATGGCATGAAGC 61.510 60.000 10.98 12.03 44.65 3.86
8014 16426 1.224069 CGACGGGCTATGGCATGAAG 61.224 60.000 10.98 0.99 40.87 3.02
8015 16427 1.227527 CGACGGGCTATGGCATGAA 60.228 57.895 10.98 0.00 40.87 2.57
8016 16428 2.421314 CGACGGGCTATGGCATGA 59.579 61.111 10.98 0.00 40.87 3.07
8017 16429 2.108976 ACGACGGGCTATGGCATG 59.891 61.111 10.98 1.26 40.87 4.06
8018 16430 2.108976 CACGACGGGCTATGGCAT 59.891 61.111 4.88 4.88 40.87 4.40
8019 16431 4.155733 CCACGACGGGCTATGGCA 62.156 66.667 2.58 0.00 40.87 4.92
8027 16439 1.876714 CGATACAAGCCACGACGGG 60.877 63.158 0.00 0.00 34.06 5.28
8028 16440 0.457166 TTCGATACAAGCCACGACGG 60.457 55.000 0.00 0.00 34.59 4.79
8029 16441 0.638746 GTTCGATACAAGCCACGACG 59.361 55.000 0.00 0.00 34.59 5.12
8030 16442 0.997196 GGTTCGATACAAGCCACGAC 59.003 55.000 0.00 0.00 34.59 4.34
8031 16443 0.892755 AGGTTCGATACAAGCCACGA 59.107 50.000 0.00 0.00 0.00 4.35
8032 16444 1.722011 AAGGTTCGATACAAGCCACG 58.278 50.000 0.00 0.00 0.00 4.94
8033 16445 4.499037 AAAAAGGTTCGATACAAGCCAC 57.501 40.909 0.00 0.00 0.00 5.01
8034 16446 6.177610 AGATAAAAAGGTTCGATACAAGCCA 58.822 36.000 0.00 0.00 0.00 4.75
8035 16447 6.679327 AGATAAAAAGGTTCGATACAAGCC 57.321 37.500 0.00 0.00 0.00 4.35
8042 16454 9.573133 CAGCAAATAAAGATAAAAAGGTTCGAT 57.427 29.630 0.00 0.00 0.00 3.59
8043 16455 8.573035 ACAGCAAATAAAGATAAAAAGGTTCGA 58.427 29.630 0.00 0.00 0.00 3.71
8044 16456 8.742554 ACAGCAAATAAAGATAAAAAGGTTCG 57.257 30.769 0.00 0.00 0.00 3.95
8051 16463 9.847706 TCGCAAATACAGCAAATAAAGATAAAA 57.152 25.926 0.00 0.00 0.00 1.52
8052 16464 9.284594 GTCGCAAATACAGCAAATAAAGATAAA 57.715 29.630 0.00 0.00 0.00 1.40
8053 16465 8.673711 AGTCGCAAATACAGCAAATAAAGATAA 58.326 29.630 0.00 0.00 0.00 1.75
8054 16466 8.208718 AGTCGCAAATACAGCAAATAAAGATA 57.791 30.769 0.00 0.00 0.00 1.98
8055 16467 7.088589 AGTCGCAAATACAGCAAATAAAGAT 57.911 32.000 0.00 0.00 0.00 2.40
8056 16468 6.494893 AGTCGCAAATACAGCAAATAAAGA 57.505 33.333 0.00 0.00 0.00 2.52
8057 16469 6.022251 CGAAGTCGCAAATACAGCAAATAAAG 60.022 38.462 0.00 0.00 0.00 1.85
8058 16470 5.792962 CGAAGTCGCAAATACAGCAAATAAA 59.207 36.000 0.00 0.00 0.00 1.40
8059 16471 5.320723 CGAAGTCGCAAATACAGCAAATAA 58.679 37.500 0.00 0.00 0.00 1.40
8060 16472 4.201773 CCGAAGTCGCAAATACAGCAAATA 60.202 41.667 0.00 0.00 38.18 1.40
8061 16473 3.426159 CCGAAGTCGCAAATACAGCAAAT 60.426 43.478 0.00 0.00 38.18 2.32
8062 16474 2.095969 CCGAAGTCGCAAATACAGCAAA 60.096 45.455 0.00 0.00 38.18 3.68
8063 16475 1.463056 CCGAAGTCGCAAATACAGCAA 59.537 47.619 0.00 0.00 38.18 3.91
8064 16476 1.075542 CCGAAGTCGCAAATACAGCA 58.924 50.000 0.00 0.00 38.18 4.41
8065 16477 1.076332 ACCGAAGTCGCAAATACAGC 58.924 50.000 0.00 0.00 38.18 4.40
8066 16478 3.059188 ACAAACCGAAGTCGCAAATACAG 60.059 43.478 0.00 0.00 38.18 2.74
8067 16479 2.873472 ACAAACCGAAGTCGCAAATACA 59.127 40.909 0.00 0.00 38.18 2.29
8068 16480 3.531262 ACAAACCGAAGTCGCAAATAC 57.469 42.857 0.00 0.00 38.18 1.89
8069 16481 5.442402 GTTTACAAACCGAAGTCGCAAATA 58.558 37.500 0.00 0.00 38.18 1.40
8070 16482 4.284485 GTTTACAAACCGAAGTCGCAAAT 58.716 39.130 0.00 0.00 38.18 2.32
8071 16483 3.682921 GTTTACAAACCGAAGTCGCAAA 58.317 40.909 0.00 0.00 38.18 3.68
8072 16484 2.285718 CGTTTACAAACCGAAGTCGCAA 60.286 45.455 0.00 0.00 38.18 4.85
8073 16485 1.258458 CGTTTACAAACCGAAGTCGCA 59.742 47.619 0.00 0.00 38.18 5.10
8074 16486 1.928276 CGTTTACAAACCGAAGTCGC 58.072 50.000 0.00 0.00 38.18 5.19
8075 16487 1.523934 AGCGTTTACAAACCGAAGTCG 59.476 47.619 0.00 0.00 35.51 4.18
8076 16488 4.916099 ATAGCGTTTACAAACCGAAGTC 57.084 40.909 0.00 0.00 35.51 3.01
8077 16489 5.349543 CCTTATAGCGTTTACAAACCGAAGT 59.650 40.000 0.00 0.00 35.51 3.01
8078 16490 5.725864 GCCTTATAGCGTTTACAAACCGAAG 60.726 44.000 0.00 0.00 35.51 3.79
8079 16491 4.093261 GCCTTATAGCGTTTACAAACCGAA 59.907 41.667 0.00 0.00 35.51 4.30
8080 16492 3.618150 GCCTTATAGCGTTTACAAACCGA 59.382 43.478 0.00 0.00 35.51 4.69
8081 16493 3.242511 GGCCTTATAGCGTTTACAAACCG 60.243 47.826 0.00 0.00 35.51 4.44
8082 16494 3.943381 AGGCCTTATAGCGTTTACAAACC 59.057 43.478 0.00 0.00 35.51 3.27
8083 16495 5.122711 TGAAGGCCTTATAGCGTTTACAAAC 59.877 40.000 20.54 0.00 40.69 2.93
8084 16496 5.247084 TGAAGGCCTTATAGCGTTTACAAA 58.753 37.500 20.54 0.00 40.69 2.83
8085 16497 4.834534 TGAAGGCCTTATAGCGTTTACAA 58.165 39.130 20.54 0.00 40.69 2.41
8086 16498 4.081309 ACTGAAGGCCTTATAGCGTTTACA 60.081 41.667 20.54 7.01 40.69 2.41
8087 16499 4.439968 ACTGAAGGCCTTATAGCGTTTAC 58.560 43.478 20.54 1.87 40.69 2.01
8088 16500 4.748277 ACTGAAGGCCTTATAGCGTTTA 57.252 40.909 20.54 0.00 40.69 2.01
8089 16501 3.629142 ACTGAAGGCCTTATAGCGTTT 57.371 42.857 20.54 1.23 40.69 3.60
8090 16502 3.532542 GAACTGAAGGCCTTATAGCGTT 58.467 45.455 20.54 16.17 43.11 4.84
8091 16503 2.481449 CGAACTGAAGGCCTTATAGCGT 60.481 50.000 20.54 11.34 0.00 5.07
8092 16504 2.128035 CGAACTGAAGGCCTTATAGCG 58.872 52.381 20.54 14.73 0.00 4.26
8093 16505 1.867865 GCGAACTGAAGGCCTTATAGC 59.132 52.381 20.54 14.28 0.00 2.97
8094 16506 3.460857 AGCGAACTGAAGGCCTTATAG 57.539 47.619 20.54 21.29 0.00 1.31
8095 16507 5.128171 TCTTTAGCGAACTGAAGGCCTTATA 59.872 40.000 20.54 9.98 39.40 0.98
8096 16508 3.906720 TTAGCGAACTGAAGGCCTTAT 57.093 42.857 20.54 3.99 0.00 1.73
8097 16509 3.259876 TCTTTAGCGAACTGAAGGCCTTA 59.740 43.478 20.54 6.23 39.40 2.69
8098 16510 2.038557 TCTTTAGCGAACTGAAGGCCTT 59.961 45.455 20.65 20.65 39.40 4.35
8099 16511 1.623811 TCTTTAGCGAACTGAAGGCCT 59.376 47.619 0.00 0.00 39.40 5.19
8100 16512 2.094762 TCTTTAGCGAACTGAAGGCC 57.905 50.000 0.00 0.00 39.40 5.19
8101 16513 2.352960 CCATCTTTAGCGAACTGAAGGC 59.647 50.000 0.00 0.00 39.40 4.35
8102 16514 2.939103 CCCATCTTTAGCGAACTGAAGG 59.061 50.000 0.00 0.00 39.40 3.46
8103 16515 2.352960 GCCCATCTTTAGCGAACTGAAG 59.647 50.000 0.00 0.00 40.09 3.02
8104 16516 2.290008 TGCCCATCTTTAGCGAACTGAA 60.290 45.455 0.00 0.00 0.00 3.02
8105 16517 1.277842 TGCCCATCTTTAGCGAACTGA 59.722 47.619 0.00 0.00 0.00 3.41
8106 16518 1.737838 TGCCCATCTTTAGCGAACTG 58.262 50.000 0.00 0.00 0.00 3.16
8107 16519 2.290323 ACTTGCCCATCTTTAGCGAACT 60.290 45.455 0.00 0.00 0.00 3.01
8108 16520 2.084546 ACTTGCCCATCTTTAGCGAAC 58.915 47.619 0.00 0.00 0.00 3.95
8109 16521 2.083774 CACTTGCCCATCTTTAGCGAA 58.916 47.619 0.00 0.00 0.00 4.70
8110 16522 1.737838 CACTTGCCCATCTTTAGCGA 58.262 50.000 0.00 0.00 0.00 4.93
8111 16523 0.099436 GCACTTGCCCATCTTTAGCG 59.901 55.000 0.00 0.00 34.31 4.26
8112 16524 1.176527 TGCACTTGCCCATCTTTAGC 58.823 50.000 0.00 0.00 41.18 3.09
8113 16525 3.285484 AGATGCACTTGCCCATCTTTAG 58.715 45.455 0.00 0.00 44.15 1.85
8114 16526 3.370840 AGATGCACTTGCCCATCTTTA 57.629 42.857 0.00 0.00 44.15 1.85
8115 16527 2.226962 AGATGCACTTGCCCATCTTT 57.773 45.000 0.00 0.00 44.15 2.52
8116 16528 3.994165 AGATGCACTTGCCCATCTT 57.006 47.368 0.00 0.00 44.15 2.40
8118 16530 4.454728 TTTTAAGATGCACTTGCCCATC 57.545 40.909 10.59 0.00 41.18 3.51
8119 16531 4.888326 TTTTTAAGATGCACTTGCCCAT 57.112 36.364 10.59 0.00 41.18 4.00
8141 16553 8.267183 AGATTGAATTGGTTTTCAGGAGTTTTT 58.733 29.630 0.00 0.00 36.97 1.94
8142 16554 7.795047 AGATTGAATTGGTTTTCAGGAGTTTT 58.205 30.769 0.00 0.00 36.97 2.43
8143 16555 7.365497 AGATTGAATTGGTTTTCAGGAGTTT 57.635 32.000 0.00 0.00 36.97 2.66
8144 16556 6.983906 AGATTGAATTGGTTTTCAGGAGTT 57.016 33.333 0.00 0.00 36.97 3.01
8145 16557 6.239402 CCAAGATTGAATTGGTTTTCAGGAGT 60.239 38.462 0.00 0.00 41.94 3.85
8146 16558 6.015180 TCCAAGATTGAATTGGTTTTCAGGAG 60.015 38.462 4.75 0.00 46.11 3.69
8147 16559 5.837979 TCCAAGATTGAATTGGTTTTCAGGA 59.162 36.000 4.75 0.00 46.11 3.86
8148 16560 6.100404 TCCAAGATTGAATTGGTTTTCAGG 57.900 37.500 4.75 0.00 46.11 3.86
8149 16561 8.436046 TTTTCCAAGATTGAATTGGTTTTCAG 57.564 30.769 4.75 0.00 46.11 3.02
8225 16637 0.541392 ATAGTGATGCGGCAAGTCCA 59.459 50.000 6.82 0.00 34.01 4.02
8236 16648 4.769688 TGGACCTTAACAGCATAGTGATG 58.230 43.478 0.00 0.00 40.09 3.07
8238 16650 3.197766 CCTGGACCTTAACAGCATAGTGA 59.802 47.826 0.00 0.00 33.43 3.41
8239 16651 3.197766 TCCTGGACCTTAACAGCATAGTG 59.802 47.826 0.00 0.00 33.43 2.74
8240 16652 3.197983 GTCCTGGACCTTAACAGCATAGT 59.802 47.826 16.14 0.00 33.43 2.12
8241 16653 3.197766 TGTCCTGGACCTTAACAGCATAG 59.802 47.826 23.42 0.00 33.43 2.23
8242 16654 3.178046 TGTCCTGGACCTTAACAGCATA 58.822 45.455 23.42 0.00 33.43 3.14
8243 16655 1.985159 TGTCCTGGACCTTAACAGCAT 59.015 47.619 23.42 0.00 33.43 3.79
8244 16656 1.347707 CTGTCCTGGACCTTAACAGCA 59.652 52.381 23.42 1.16 31.87 4.41
8264 16810 1.065126 AGTACTTGGCTTCATGAGGGC 60.065 52.381 22.61 22.61 0.00 5.19
8269 16815 4.682787 TCGACATAGTACTTGGCTTCATG 58.317 43.478 0.00 0.00 0.00 3.07
8270 16816 5.339008 TTCGACATAGTACTTGGCTTCAT 57.661 39.130 0.00 0.00 0.00 2.57
8330 16876 2.154462 CCTTCTTCTCGGCAACATTGT 58.846 47.619 0.00 0.00 0.00 2.71
8368 16932 3.774766 ACTGATGAGCCGGGCATAATATA 59.225 43.478 23.09 3.80 0.00 0.86
8378 16942 2.202797 CGGACACTGATGAGCCGG 60.203 66.667 0.00 0.00 40.87 6.13
8379 16943 2.887568 GCGGACACTGATGAGCCG 60.888 66.667 0.00 0.00 44.51 5.52
8380 16944 2.279502 TACGCGGACACTGATGAGCC 62.280 60.000 12.47 0.00 0.00 4.70
8381 16945 0.249073 ATACGCGGACACTGATGAGC 60.249 55.000 12.47 0.00 0.00 4.26
8382 16946 2.209838 AATACGCGGACACTGATGAG 57.790 50.000 12.47 0.00 0.00 2.90
8393 17476 1.901591 TAGGGAGGACTAATACGCGG 58.098 55.000 12.47 0.00 0.00 6.46
8398 17481 6.296317 CCGTCTACAGATAGGGAGGACTAATA 60.296 46.154 0.00 0.00 0.00 0.98
8400 17483 4.202440 CCGTCTACAGATAGGGAGGACTAA 60.202 50.000 0.00 0.00 0.00 2.24
8405 17488 1.145325 ACCCGTCTACAGATAGGGAGG 59.855 57.143 22.09 4.50 43.23 4.30
8409 17492 0.311165 CGCACCCGTCTACAGATAGG 59.689 60.000 0.00 0.00 0.00 2.57
8415 17498 2.913578 ACACCGCACCCGTCTACA 60.914 61.111 0.00 0.00 0.00 2.74
8428 17511 1.225376 TGACGTGCAAATCGGACACC 61.225 55.000 0.00 0.00 35.22 4.16
8436 17522 0.593128 GTCCAAGCTGACGTGCAAAT 59.407 50.000 0.00 0.00 34.99 2.32
8440 17526 1.499056 CATGTCCAAGCTGACGTGC 59.501 57.895 12.07 0.00 43.20 5.34
8443 17529 2.401766 GGGCATGTCCAAGCTGACG 61.402 63.158 12.68 0.00 38.11 4.35
8468 17554 1.330306 CCGATTTGTTCTTTGCGCTG 58.670 50.000 9.73 0.00 0.00 5.18
8469 17555 0.387239 GCCGATTTGTTCTTTGCGCT 60.387 50.000 9.73 0.00 0.00 5.92
8470 17556 0.387239 AGCCGATTTGTTCTTTGCGC 60.387 50.000 0.00 0.00 0.00 6.09
8471 17557 2.892373 TAGCCGATTTGTTCTTTGCG 57.108 45.000 0.00 0.00 0.00 4.85
8487 17583 5.050363 TCAGTCGACTCACACAAATTTTAGC 60.050 40.000 16.96 0.00 0.00 3.09
8490 17586 4.035208 GGTCAGTCGACTCACACAAATTTT 59.965 41.667 21.57 0.00 42.21 1.82
8494 17590 1.202486 GGGTCAGTCGACTCACACAAA 60.202 52.381 21.57 0.00 42.73 2.83
8495 17591 0.387929 GGGTCAGTCGACTCACACAA 59.612 55.000 21.57 0.00 42.73 3.33
8526 17626 5.259832 TCAACAATGTGCAAGTTGATTGA 57.740 34.783 17.89 16.72 44.60 2.57
8564 17664 6.836953 GCAAGTCTTTTGCCTTGTTTAAAAA 58.163 32.000 0.54 0.00 40.13 1.94
8565 17665 6.415798 GCAAGTCTTTTGCCTTGTTTAAAA 57.584 33.333 0.54 0.00 40.13 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.