Multiple sequence alignment - TraesCS7D01G350600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G350600 chr7D 100.000 2435 0 0 1 2435 451185747 451188181 0.000000e+00 4497
1 TraesCS7D01G350600 chr7B 93.690 1870 72 23 517 2345 470835411 470837275 0.000000e+00 2758
2 TraesCS7D01G350600 chr7A 94.082 1656 74 15 577 2211 545935855 545934203 0.000000e+00 2494
3 TraesCS7D01G350600 chr6A 83.311 1492 247 2 588 2078 199014123 199015613 0.000000e+00 1375
4 TraesCS7D01G350600 chr6D 83.044 1498 252 2 588 2084 148483802 148482306 0.000000e+00 1358
5 TraesCS7D01G350600 chr6B 83.044 1498 252 2 588 2084 261454197 261452701 0.000000e+00 1358
6 TraesCS7D01G350600 chr1A 81.307 1546 252 30 614 2135 573243921 573242389 0.000000e+00 1219
7 TraesCS7D01G350600 chr1D 81.943 1462 232 25 614 2053 477190529 477189078 0.000000e+00 1208
8 TraesCS7D01G350600 chr1D 78.973 1441 245 50 688 2102 474376526 474375118 0.000000e+00 929
9 TraesCS7D01G350600 chr1B 81.408 1463 238 28 614 2053 664778145 664776694 0.000000e+00 1164
10 TraesCS7D01G350600 chr4D 71.821 692 152 34 1382 2053 405028698 405028030 9.010000e-35 158
11 TraesCS7D01G350600 chr4A 71.221 688 163 29 1382 2053 62538627 62537959 9.080000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G350600 chr7D 451185747 451188181 2434 False 4497 4497 100.000 1 2435 1 chr7D.!!$F1 2434
1 TraesCS7D01G350600 chr7B 470835411 470837275 1864 False 2758 2758 93.690 517 2345 1 chr7B.!!$F1 1828
2 TraesCS7D01G350600 chr7A 545934203 545935855 1652 True 2494 2494 94.082 577 2211 1 chr7A.!!$R1 1634
3 TraesCS7D01G350600 chr6A 199014123 199015613 1490 False 1375 1375 83.311 588 2078 1 chr6A.!!$F1 1490
4 TraesCS7D01G350600 chr6D 148482306 148483802 1496 True 1358 1358 83.044 588 2084 1 chr6D.!!$R1 1496
5 TraesCS7D01G350600 chr6B 261452701 261454197 1496 True 1358 1358 83.044 588 2084 1 chr6B.!!$R1 1496
6 TraesCS7D01G350600 chr1A 573242389 573243921 1532 True 1219 1219 81.307 614 2135 1 chr1A.!!$R1 1521
7 TraesCS7D01G350600 chr1D 477189078 477190529 1451 True 1208 1208 81.943 614 2053 1 chr1D.!!$R2 1439
8 TraesCS7D01G350600 chr1D 474375118 474376526 1408 True 929 929 78.973 688 2102 1 chr1D.!!$R1 1414
9 TraesCS7D01G350600 chr1B 664776694 664778145 1451 True 1164 1164 81.408 614 2053 1 chr1B.!!$R1 1439

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.03213 CACGTACGCAGAGGGCATAT 59.968 55.0 16.72 0.0 45.17 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2279 1.388093 CGCGATAGATTTGCATCTCGG 59.612 52.381 0.0 0.0 40.53 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.637709 CCTTTTGGTTGTTGTTATTAGAAGC 57.362 36.000 0.00 0.00 34.07 3.86
34 35 7.433680 CCTTTTGGTTGTTGTTATTAGAAGCT 58.566 34.615 0.00 0.00 34.07 3.74
35 36 7.926018 CCTTTTGGTTGTTGTTATTAGAAGCTT 59.074 33.333 0.00 0.00 34.07 3.74
36 37 8.641499 TTTTGGTTGTTGTTATTAGAAGCTTG 57.359 30.769 2.10 0.00 0.00 4.01
37 38 7.575414 TTGGTTGTTGTTATTAGAAGCTTGA 57.425 32.000 2.10 0.00 0.00 3.02
38 39 7.202016 TGGTTGTTGTTATTAGAAGCTTGAG 57.798 36.000 2.10 0.00 0.00 3.02
39 40 6.206634 TGGTTGTTGTTATTAGAAGCTTGAGG 59.793 38.462 2.10 0.00 0.00 3.86
40 41 6.349363 GGTTGTTGTTATTAGAAGCTTGAGGG 60.349 42.308 2.10 0.00 0.00 4.30
41 42 5.876357 TGTTGTTATTAGAAGCTTGAGGGT 58.124 37.500 2.10 0.00 0.00 4.34
42 43 5.705441 TGTTGTTATTAGAAGCTTGAGGGTG 59.295 40.000 2.10 0.00 0.00 4.61
43 44 4.261801 TGTTATTAGAAGCTTGAGGGTGC 58.738 43.478 2.10 0.00 0.00 5.01
44 45 4.261801 GTTATTAGAAGCTTGAGGGTGCA 58.738 43.478 2.10 0.00 0.00 4.57
45 46 2.479566 TTAGAAGCTTGAGGGTGCAG 57.520 50.000 2.10 0.00 0.00 4.41
46 47 0.036010 TAGAAGCTTGAGGGTGCAGC 60.036 55.000 2.10 7.55 0.00 5.25
47 48 1.601759 GAAGCTTGAGGGTGCAGCA 60.602 57.895 19.06 0.00 0.00 4.41
48 49 1.152694 AAGCTTGAGGGTGCAGCAA 60.153 52.632 19.06 2.42 0.00 3.91
49 50 1.458639 AAGCTTGAGGGTGCAGCAAC 61.459 55.000 19.06 0.03 0.00 4.17
50 51 2.924105 GCTTGAGGGTGCAGCAACC 61.924 63.158 23.32 23.32 42.50 3.77
58 59 3.318384 TGCAGCAACCGGGAGCTA 61.318 61.111 20.52 5.77 39.50 3.32
59 60 2.512515 GCAGCAACCGGGAGCTAG 60.513 66.667 20.52 15.70 39.50 3.42
60 61 2.512515 CAGCAACCGGGAGCTAGC 60.513 66.667 20.52 6.62 39.50 3.42
61 62 3.787001 AGCAACCGGGAGCTAGCC 61.787 66.667 19.74 2.59 39.78 3.93
62 63 4.096003 GCAACCGGGAGCTAGCCA 62.096 66.667 12.13 0.00 0.00 4.75
63 64 2.187946 CAACCGGGAGCTAGCCAG 59.812 66.667 12.13 0.00 0.00 4.85
67 68 3.474570 CGGGAGCTAGCCAGGCTT 61.475 66.667 22.26 0.00 40.44 4.35
68 69 2.134287 CGGGAGCTAGCCAGGCTTA 61.134 63.158 22.26 4.80 40.44 3.09
69 70 1.686325 CGGGAGCTAGCCAGGCTTAA 61.686 60.000 22.26 0.29 40.44 1.85
70 71 0.179043 GGGAGCTAGCCAGGCTTAAC 60.179 60.000 22.26 9.70 40.44 2.01
71 72 0.179043 GGAGCTAGCCAGGCTTAACC 60.179 60.000 22.26 14.40 40.44 2.85
72 73 0.541863 GAGCTAGCCAGGCTTAACCA 59.458 55.000 22.26 0.00 43.14 3.67
73 74 0.253327 AGCTAGCCAGGCTTAACCAC 59.747 55.000 22.26 3.08 43.14 4.16
74 75 0.748367 GCTAGCCAGGCTTAACCACC 60.748 60.000 22.26 0.00 43.14 4.61
75 76 0.462047 CTAGCCAGGCTTAACCACCG 60.462 60.000 22.26 0.00 43.14 4.94
76 77 1.906105 TAGCCAGGCTTAACCACCGG 61.906 60.000 22.26 0.00 43.14 5.28
77 78 2.750237 CCAGGCTTAACCACCGGC 60.750 66.667 0.00 0.00 43.14 6.13
78 79 3.124921 CAGGCTTAACCACCGGCG 61.125 66.667 0.00 0.00 43.14 6.46
79 80 4.404098 AGGCTTAACCACCGGCGG 62.404 66.667 27.06 27.06 43.14 6.13
82 83 2.359478 CTTAACCACCGGCGGCTT 60.359 61.111 28.71 17.15 0.00 4.35
83 84 2.670251 TTAACCACCGGCGGCTTG 60.670 61.111 28.71 18.13 0.00 4.01
84 85 4.708386 TAACCACCGGCGGCTTGG 62.708 66.667 28.24 28.24 0.00 3.61
88 89 3.814268 CACCGGCGGCTTGGAATG 61.814 66.667 28.71 11.33 0.00 2.67
89 90 4.028490 ACCGGCGGCTTGGAATGA 62.028 61.111 28.71 0.00 0.00 2.57
90 91 2.516930 CCGGCGGCTTGGAATGAT 60.517 61.111 15.42 0.00 0.00 2.45
91 92 2.546494 CCGGCGGCTTGGAATGATC 61.546 63.158 15.42 0.00 0.00 2.92
92 93 2.546494 CGGCGGCTTGGAATGATCC 61.546 63.158 7.61 0.00 46.76 3.36
100 101 2.113986 GGAATGATCCAGGGCGGG 59.886 66.667 0.00 0.00 45.79 6.13
101 102 2.595754 GAATGATCCAGGGCGGGC 60.596 66.667 0.00 0.00 34.36 6.13
102 103 3.419580 AATGATCCAGGGCGGGCA 61.420 61.111 3.27 0.00 34.36 5.36
103 104 3.426309 AATGATCCAGGGCGGGCAG 62.426 63.158 3.27 0.00 34.36 4.85
113 114 3.061848 GCGGGCAGGCAGCTTAAA 61.062 61.111 12.04 0.00 44.79 1.52
114 115 2.877691 CGGGCAGGCAGCTTAAAC 59.122 61.111 0.81 0.00 44.79 2.01
115 116 1.971167 CGGGCAGGCAGCTTAAACA 60.971 57.895 0.81 0.00 44.79 2.83
116 117 1.315257 CGGGCAGGCAGCTTAAACAT 61.315 55.000 0.81 0.00 44.79 2.71
117 118 0.897621 GGGCAGGCAGCTTAAACATT 59.102 50.000 0.81 0.00 44.79 2.71
118 119 1.404583 GGGCAGGCAGCTTAAACATTG 60.405 52.381 0.81 0.00 44.79 2.82
119 120 1.404583 GGCAGGCAGCTTAAACATTGG 60.405 52.381 0.81 0.00 44.79 3.16
120 121 2.000429 CAGGCAGCTTAAACATTGGC 58.000 50.000 0.00 0.00 36.47 4.52
121 122 1.273048 CAGGCAGCTTAAACATTGGCA 59.727 47.619 0.00 0.00 38.44 4.92
122 123 1.273327 AGGCAGCTTAAACATTGGCAC 59.727 47.619 0.00 0.00 38.44 5.01
123 124 1.672737 GGCAGCTTAAACATTGGCACC 60.673 52.381 0.00 0.00 36.27 5.01
124 125 1.000731 GCAGCTTAAACATTGGCACCA 59.999 47.619 0.00 0.00 0.00 4.17
125 126 2.354003 GCAGCTTAAACATTGGCACCAT 60.354 45.455 0.00 0.00 0.00 3.55
126 127 3.514645 CAGCTTAAACATTGGCACCATC 58.485 45.455 0.00 0.00 0.00 3.51
127 128 2.164219 AGCTTAAACATTGGCACCATCG 59.836 45.455 0.00 0.00 0.00 3.84
128 129 2.529151 CTTAAACATTGGCACCATCGC 58.471 47.619 0.00 0.00 0.00 4.58
129 130 1.539157 TAAACATTGGCACCATCGCA 58.461 45.000 0.00 0.00 0.00 5.10
130 131 0.896923 AAACATTGGCACCATCGCAT 59.103 45.000 0.00 0.00 0.00 4.73
131 132 0.896923 AACATTGGCACCATCGCATT 59.103 45.000 0.00 0.00 0.00 3.56
132 133 1.761449 ACATTGGCACCATCGCATTA 58.239 45.000 0.00 0.00 0.00 1.90
133 134 1.405105 ACATTGGCACCATCGCATTAC 59.595 47.619 0.00 0.00 0.00 1.89
134 135 0.662619 ATTGGCACCATCGCATTACG 59.337 50.000 0.00 0.00 45.62 3.18
135 136 1.987704 TTGGCACCATCGCATTACGC 61.988 55.000 0.00 0.00 43.23 4.42
147 148 3.755041 GCATTACGCGACAGATAAGAC 57.245 47.619 15.93 0.00 0.00 3.01
148 149 3.113322 GCATTACGCGACAGATAAGACA 58.887 45.455 15.93 0.00 0.00 3.41
149 150 3.180584 GCATTACGCGACAGATAAGACAG 59.819 47.826 15.93 0.00 0.00 3.51
150 151 4.598062 CATTACGCGACAGATAAGACAGA 58.402 43.478 15.93 0.00 0.00 3.41
151 152 2.546195 ACGCGACAGATAAGACAGAC 57.454 50.000 15.93 0.00 0.00 3.51
152 153 1.202043 ACGCGACAGATAAGACAGACG 60.202 52.381 15.93 0.00 0.00 4.18
153 154 1.828832 GCGACAGATAAGACAGACGG 58.171 55.000 0.00 0.00 0.00 4.79
154 155 1.828832 CGACAGATAAGACAGACGGC 58.171 55.000 0.00 0.00 0.00 5.68
155 156 1.534175 CGACAGATAAGACAGACGGCC 60.534 57.143 0.00 0.00 0.00 6.13
156 157 1.476891 GACAGATAAGACAGACGGCCA 59.523 52.381 2.24 0.00 0.00 5.36
157 158 1.478510 ACAGATAAGACAGACGGCCAG 59.521 52.381 2.24 0.00 0.00 4.85
158 159 1.115467 AGATAAGACAGACGGCCAGG 58.885 55.000 2.24 0.00 0.00 4.45
159 160 1.112113 GATAAGACAGACGGCCAGGA 58.888 55.000 2.24 0.00 0.00 3.86
160 161 1.067821 GATAAGACAGACGGCCAGGAG 59.932 57.143 2.24 0.00 0.00 3.69
161 162 0.970937 TAAGACAGACGGCCAGGAGG 60.971 60.000 2.24 0.00 38.23 4.30
188 189 3.143675 GAGCAGTCGAGCAAATCCA 57.856 52.632 0.00 0.00 36.85 3.41
189 190 1.005340 GAGCAGTCGAGCAAATCCAG 58.995 55.000 0.00 0.00 36.85 3.86
190 191 1.023513 AGCAGTCGAGCAAATCCAGC 61.024 55.000 0.00 0.00 36.85 4.85
191 192 1.300971 GCAGTCGAGCAAATCCAGCA 61.301 55.000 0.00 0.00 0.00 4.41
192 193 0.445436 CAGTCGAGCAAATCCAGCAC 59.555 55.000 0.00 0.00 0.00 4.40
193 194 0.674895 AGTCGAGCAAATCCAGCACC 60.675 55.000 0.00 0.00 0.00 5.01
194 195 0.955428 GTCGAGCAAATCCAGCACCA 60.955 55.000 0.00 0.00 0.00 4.17
195 196 0.674581 TCGAGCAAATCCAGCACCAG 60.675 55.000 0.00 0.00 0.00 4.00
196 197 1.509923 GAGCAAATCCAGCACCAGC 59.490 57.895 0.00 0.00 42.56 4.85
197 198 1.228644 AGCAAATCCAGCACCAGCA 60.229 52.632 0.00 0.00 45.49 4.41
198 199 1.080298 GCAAATCCAGCACCAGCAC 60.080 57.895 0.00 0.00 45.49 4.40
199 200 1.210931 CAAATCCAGCACCAGCACG 59.789 57.895 0.00 0.00 45.49 5.34
200 201 1.228245 AAATCCAGCACCAGCACGT 60.228 52.632 0.00 0.00 45.49 4.49
201 202 0.036164 AAATCCAGCACCAGCACGTA 59.964 50.000 0.00 0.00 45.49 3.57
202 203 0.673644 AATCCAGCACCAGCACGTAC 60.674 55.000 0.00 0.00 45.49 3.67
203 204 2.835701 ATCCAGCACCAGCACGTACG 62.836 60.000 15.01 15.01 45.49 3.67
204 205 3.777925 CAGCACCAGCACGTACGC 61.778 66.667 16.72 0.00 45.49 4.42
205 206 4.293648 AGCACCAGCACGTACGCA 62.294 61.111 16.72 0.00 45.49 5.24
206 207 3.777925 GCACCAGCACGTACGCAG 61.778 66.667 16.72 9.69 41.58 5.18
207 208 2.049526 CACCAGCACGTACGCAGA 60.050 61.111 16.72 0.00 0.00 4.26
208 209 2.088763 CACCAGCACGTACGCAGAG 61.089 63.158 16.72 4.16 0.00 3.35
209 210 2.507102 CCAGCACGTACGCAGAGG 60.507 66.667 16.72 9.08 0.00 3.69
210 211 2.507102 CAGCACGTACGCAGAGGG 60.507 66.667 16.72 0.00 0.00 4.30
211 212 4.436998 AGCACGTACGCAGAGGGC 62.437 66.667 16.72 9.61 39.90 5.19
212 213 4.735132 GCACGTACGCAGAGGGCA 62.735 66.667 16.72 0.00 45.17 5.36
213 214 2.184322 CACGTACGCAGAGGGCAT 59.816 61.111 16.72 0.00 45.17 4.40
214 215 1.435925 CACGTACGCAGAGGGCATA 59.564 57.895 16.72 0.00 45.17 3.14
215 216 0.032130 CACGTACGCAGAGGGCATAT 59.968 55.000 16.72 0.00 45.17 1.78
216 217 1.268625 CACGTACGCAGAGGGCATATA 59.731 52.381 16.72 0.00 45.17 0.86
217 218 1.958579 ACGTACGCAGAGGGCATATAA 59.041 47.619 16.72 0.00 45.17 0.98
218 219 2.561419 ACGTACGCAGAGGGCATATAAT 59.439 45.455 16.72 0.00 45.17 1.28
219 220 2.923655 CGTACGCAGAGGGCATATAATG 59.076 50.000 0.52 0.00 45.17 1.90
230 231 2.291209 CATATAATGCTGCACCCCCA 57.709 50.000 3.57 0.00 0.00 4.96
231 232 1.888512 CATATAATGCTGCACCCCCAC 59.111 52.381 3.57 0.00 0.00 4.61
232 233 0.922626 TATAATGCTGCACCCCCACA 59.077 50.000 3.57 0.00 0.00 4.17
233 234 0.684153 ATAATGCTGCACCCCCACAC 60.684 55.000 3.57 0.00 0.00 3.82
234 235 2.779742 TAATGCTGCACCCCCACACC 62.780 60.000 3.57 0.00 0.00 4.16
242 243 4.127744 CCCCCACACCCGCATGAT 62.128 66.667 0.00 0.00 0.00 2.45
243 244 2.829914 CCCCACACCCGCATGATG 60.830 66.667 0.00 0.00 0.00 3.07
244 245 2.271821 CCCACACCCGCATGATGA 59.728 61.111 0.00 0.00 0.00 2.92
245 246 1.152902 CCCACACCCGCATGATGAT 60.153 57.895 0.00 0.00 0.00 2.45
246 247 0.108396 CCCACACCCGCATGATGATA 59.892 55.000 0.00 0.00 0.00 2.15
247 248 1.516161 CCACACCCGCATGATGATAG 58.484 55.000 0.00 0.00 0.00 2.08
248 249 1.070601 CCACACCCGCATGATGATAGA 59.929 52.381 0.00 0.00 0.00 1.98
249 250 2.138320 CACACCCGCATGATGATAGAC 58.862 52.381 0.00 0.00 0.00 2.59
250 251 2.042464 ACACCCGCATGATGATAGACT 58.958 47.619 0.00 0.00 0.00 3.24
251 252 2.224137 ACACCCGCATGATGATAGACTG 60.224 50.000 0.00 0.00 0.00 3.51
252 253 2.036346 CACCCGCATGATGATAGACTGA 59.964 50.000 0.00 0.00 0.00 3.41
253 254 2.902486 ACCCGCATGATGATAGACTGAT 59.098 45.455 0.00 0.00 0.00 2.90
254 255 3.259902 CCCGCATGATGATAGACTGATG 58.740 50.000 0.00 0.00 0.00 3.07
255 256 3.259902 CCGCATGATGATAGACTGATGG 58.740 50.000 0.00 0.00 0.00 3.51
256 257 3.056322 CCGCATGATGATAGACTGATGGA 60.056 47.826 0.00 0.00 0.00 3.41
257 258 4.562143 CCGCATGATGATAGACTGATGGAA 60.562 45.833 0.00 0.00 0.00 3.53
258 259 5.176592 CGCATGATGATAGACTGATGGAAT 58.823 41.667 0.00 0.00 0.00 3.01
259 260 5.291371 CGCATGATGATAGACTGATGGAATC 59.709 44.000 0.00 0.00 45.83 2.52
284 285 4.631740 TCCGGCCTGGAGTGGACA 62.632 66.667 11.66 0.00 43.74 4.02
285 286 3.636231 CCGGCCTGGAGTGGACAA 61.636 66.667 7.77 0.00 42.00 3.18
286 287 2.358737 CGGCCTGGAGTGGACAAC 60.359 66.667 0.00 0.00 33.86 3.32
287 288 2.358737 GGCCTGGAGTGGACAACG 60.359 66.667 0.00 0.00 34.56 4.10
288 289 2.426023 GCCTGGAGTGGACAACGT 59.574 61.111 0.00 0.00 0.00 3.99
289 290 1.669440 GCCTGGAGTGGACAACGTA 59.331 57.895 0.00 0.00 0.00 3.57
290 291 0.034337 GCCTGGAGTGGACAACGTAA 59.966 55.000 0.00 0.00 0.00 3.18
307 308 4.653806 CGTAAGTGAGAAGAAAGCTTGG 57.346 45.455 0.00 0.00 33.61 3.61
308 309 4.307432 CGTAAGTGAGAAGAAAGCTTGGA 58.693 43.478 0.00 0.00 33.61 3.53
309 310 4.150804 CGTAAGTGAGAAGAAAGCTTGGAC 59.849 45.833 0.00 0.00 33.61 4.02
310 311 4.429854 AAGTGAGAAGAAAGCTTGGACT 57.570 40.909 0.00 0.00 33.61 3.85
311 312 3.737850 AGTGAGAAGAAAGCTTGGACTG 58.262 45.455 0.00 0.00 33.61 3.51
312 313 3.389329 AGTGAGAAGAAAGCTTGGACTGA 59.611 43.478 0.00 0.00 33.61 3.41
313 314 3.496507 GTGAGAAGAAAGCTTGGACTGAC 59.503 47.826 0.00 0.00 33.61 3.51
314 315 3.070748 GAGAAGAAAGCTTGGACTGACC 58.929 50.000 0.00 0.00 33.61 4.02
315 316 2.155279 GAAGAAAGCTTGGACTGACCC 58.845 52.381 0.00 0.00 38.00 4.46
316 317 1.140312 AGAAAGCTTGGACTGACCCA 58.860 50.000 0.00 0.00 38.00 4.51
317 318 1.072965 AGAAAGCTTGGACTGACCCAG 59.927 52.381 0.00 0.00 37.53 4.45
318 319 1.072331 GAAAGCTTGGACTGACCCAGA 59.928 52.381 0.00 0.00 37.53 3.86
319 320 1.140312 AAGCTTGGACTGACCCAGAA 58.860 50.000 0.00 0.00 37.53 3.02
320 321 1.140312 AGCTTGGACTGACCCAGAAA 58.860 50.000 1.61 0.00 37.53 2.52
321 322 1.707427 AGCTTGGACTGACCCAGAAAT 59.293 47.619 1.61 0.00 37.53 2.17
322 323 1.815003 GCTTGGACTGACCCAGAAATG 59.185 52.381 1.61 0.00 37.53 2.32
323 324 2.553028 GCTTGGACTGACCCAGAAATGA 60.553 50.000 1.61 0.00 37.53 2.57
324 325 3.875369 GCTTGGACTGACCCAGAAATGAT 60.875 47.826 1.61 0.00 37.53 2.45
325 326 3.354948 TGGACTGACCCAGAAATGATG 57.645 47.619 0.45 0.00 38.00 3.07
326 327 2.025981 TGGACTGACCCAGAAATGATGG 60.026 50.000 0.45 0.00 38.00 3.51
327 328 2.239654 GGACTGACCCAGAAATGATGGA 59.760 50.000 0.45 0.00 40.51 3.41
328 329 3.117738 GGACTGACCCAGAAATGATGGAT 60.118 47.826 0.45 0.00 40.51 3.41
329 330 4.133078 GACTGACCCAGAAATGATGGATC 58.867 47.826 0.45 0.00 40.51 3.36
330 331 3.117738 ACTGACCCAGAAATGATGGATCC 60.118 47.826 4.20 4.20 40.51 3.36
331 332 3.125656 TGACCCAGAAATGATGGATCCT 58.874 45.455 14.23 0.00 40.51 3.24
332 333 4.306391 TGACCCAGAAATGATGGATCCTA 58.694 43.478 14.23 0.00 40.51 2.94
333 334 4.726317 TGACCCAGAAATGATGGATCCTAA 59.274 41.667 14.23 0.00 40.51 2.69
334 335 5.373555 TGACCCAGAAATGATGGATCCTAAT 59.626 40.000 14.23 0.00 40.51 1.73
335 336 5.885465 ACCCAGAAATGATGGATCCTAATC 58.115 41.667 14.23 9.18 40.51 1.75
336 337 5.373555 ACCCAGAAATGATGGATCCTAATCA 59.626 40.000 15.19 15.19 40.51 2.57
337 338 5.709164 CCCAGAAATGATGGATCCTAATCAC 59.291 44.000 15.16 5.34 40.51 3.06
338 339 5.410746 CCAGAAATGATGGATCCTAATCACG 59.589 44.000 15.16 4.45 40.51 4.35
339 340 5.994054 CAGAAATGATGGATCCTAATCACGT 59.006 40.000 15.16 7.67 35.71 4.49
340 341 6.484643 CAGAAATGATGGATCCTAATCACGTT 59.515 38.462 15.16 12.50 35.71 3.99
341 342 7.657354 CAGAAATGATGGATCCTAATCACGTTA 59.343 37.037 15.16 0.00 35.71 3.18
342 343 8.210946 AGAAATGATGGATCCTAATCACGTTAA 58.789 33.333 15.16 0.00 35.71 2.01
343 344 8.746052 AAATGATGGATCCTAATCACGTTAAA 57.254 30.769 15.16 0.00 35.71 1.52
344 345 8.746052 AATGATGGATCCTAATCACGTTAAAA 57.254 30.769 15.16 0.00 35.71 1.52
345 346 7.548196 TGATGGATCCTAATCACGTTAAAAC 57.452 36.000 14.23 0.00 33.21 2.43
346 347 7.106890 TGATGGATCCTAATCACGTTAAAACA 58.893 34.615 14.23 0.00 33.21 2.83
347 348 7.608376 TGATGGATCCTAATCACGTTAAAACAA 59.392 33.333 14.23 0.00 33.21 2.83
348 349 7.747155 TGGATCCTAATCACGTTAAAACAAA 57.253 32.000 14.23 0.00 33.21 2.83
349 350 7.586747 TGGATCCTAATCACGTTAAAACAAAC 58.413 34.615 14.23 0.00 33.21 2.93
360 361 5.503498 CGTTAAAACAAACGGAATCTCACA 58.497 37.500 1.36 0.00 46.47 3.58
361 362 6.140110 CGTTAAAACAAACGGAATCTCACAT 58.860 36.000 1.36 0.00 46.47 3.21
362 363 6.086241 CGTTAAAACAAACGGAATCTCACATG 59.914 38.462 1.36 0.00 46.47 3.21
363 364 5.766150 AAAACAAACGGAATCTCACATGA 57.234 34.783 0.00 0.00 0.00 3.07
364 365 5.766150 AAACAAACGGAATCTCACATGAA 57.234 34.783 0.00 0.00 0.00 2.57
365 366 5.766150 AACAAACGGAATCTCACATGAAA 57.234 34.783 0.00 0.00 0.00 2.69
366 367 5.108385 ACAAACGGAATCTCACATGAAAC 57.892 39.130 0.00 0.00 0.00 2.78
367 368 4.151070 CAAACGGAATCTCACATGAAACG 58.849 43.478 0.00 0.00 0.00 3.60
368 369 1.732259 ACGGAATCTCACATGAAACGC 59.268 47.619 0.00 0.00 0.00 4.84
369 370 1.267038 CGGAATCTCACATGAAACGCG 60.267 52.381 3.53 3.53 0.00 6.01
370 371 1.062587 GGAATCTCACATGAAACGCGG 59.937 52.381 12.47 0.00 0.00 6.46
371 372 1.999735 GAATCTCACATGAAACGCGGA 59.000 47.619 12.47 0.00 0.00 5.54
372 373 2.315925 ATCTCACATGAAACGCGGAT 57.684 45.000 12.47 0.00 0.00 4.18
373 374 2.093306 TCTCACATGAAACGCGGATT 57.907 45.000 12.47 4.81 0.00 3.01
374 375 2.422597 TCTCACATGAAACGCGGATTT 58.577 42.857 12.47 1.91 0.00 2.17
375 376 2.415168 TCTCACATGAAACGCGGATTTC 59.585 45.455 12.47 13.14 38.77 2.17
376 377 2.416547 CTCACATGAAACGCGGATTTCT 59.583 45.455 19.11 6.20 39.02 2.52
377 378 2.811431 TCACATGAAACGCGGATTTCTT 59.189 40.909 19.11 12.34 39.02 2.52
378 379 3.252215 TCACATGAAACGCGGATTTCTTT 59.748 39.130 19.11 6.77 39.02 2.52
379 380 3.603770 CACATGAAACGCGGATTTCTTTC 59.396 43.478 19.11 14.67 39.02 2.62
380 381 2.981400 TGAAACGCGGATTTCTTTCC 57.019 45.000 19.11 3.20 39.02 3.13
381 382 1.538075 TGAAACGCGGATTTCTTTCCC 59.462 47.619 19.11 0.00 39.02 3.97
382 383 0.885879 AAACGCGGATTTCTTTCCCC 59.114 50.000 12.47 0.00 31.61 4.81
383 384 0.250989 AACGCGGATTTCTTTCCCCA 60.251 50.000 12.47 0.00 31.61 4.96
384 385 0.034477 ACGCGGATTTCTTTCCCCAT 60.034 50.000 12.47 0.00 31.61 4.00
385 386 0.663153 CGCGGATTTCTTTCCCCATC 59.337 55.000 0.00 0.00 31.61 3.51
386 387 1.032794 GCGGATTTCTTTCCCCATCC 58.967 55.000 0.00 0.00 31.61 3.51
387 388 1.684869 GCGGATTTCTTTCCCCATCCA 60.685 52.381 0.00 0.00 35.78 3.41
388 389 2.733956 CGGATTTCTTTCCCCATCCAA 58.266 47.619 0.00 0.00 35.78 3.53
389 390 3.299503 CGGATTTCTTTCCCCATCCAAT 58.700 45.455 0.00 0.00 35.78 3.16
390 391 3.319122 CGGATTTCTTTCCCCATCCAATC 59.681 47.826 0.00 0.00 35.78 2.67
391 392 4.289245 GGATTTCTTTCCCCATCCAATCA 58.711 43.478 0.00 0.00 36.04 2.57
392 393 4.100035 GGATTTCTTTCCCCATCCAATCAC 59.900 45.833 0.00 0.00 36.04 3.06
393 394 2.826674 TCTTTCCCCATCCAATCACC 57.173 50.000 0.00 0.00 0.00 4.02
394 395 1.999295 TCTTTCCCCATCCAATCACCA 59.001 47.619 0.00 0.00 0.00 4.17
395 396 2.102578 CTTTCCCCATCCAATCACCAC 58.897 52.381 0.00 0.00 0.00 4.16
396 397 1.381867 TTCCCCATCCAATCACCACT 58.618 50.000 0.00 0.00 0.00 4.00
397 398 0.918983 TCCCCATCCAATCACCACTC 59.081 55.000 0.00 0.00 0.00 3.51
398 399 0.106519 CCCCATCCAATCACCACTCC 60.107 60.000 0.00 0.00 0.00 3.85
399 400 0.106519 CCCATCCAATCACCACTCCC 60.107 60.000 0.00 0.00 0.00 4.30
400 401 0.464373 CCATCCAATCACCACTCCCG 60.464 60.000 0.00 0.00 0.00 5.14
401 402 1.097547 CATCCAATCACCACTCCCGC 61.098 60.000 0.00 0.00 0.00 6.13
402 403 2.270874 ATCCAATCACCACTCCCGCC 62.271 60.000 0.00 0.00 0.00 6.13
403 404 2.671070 CAATCACCACTCCCGCCT 59.329 61.111 0.00 0.00 0.00 5.52
404 405 1.746615 CAATCACCACTCCCGCCTG 60.747 63.158 0.00 0.00 0.00 4.85
405 406 1.918293 AATCACCACTCCCGCCTGA 60.918 57.895 0.00 0.00 0.00 3.86
406 407 1.274703 AATCACCACTCCCGCCTGAT 61.275 55.000 0.00 0.00 0.00 2.90
407 408 1.690219 ATCACCACTCCCGCCTGATC 61.690 60.000 0.00 0.00 0.00 2.92
408 409 2.284625 ACCACTCCCGCCTGATCA 60.285 61.111 0.00 0.00 0.00 2.92
409 410 1.690633 ACCACTCCCGCCTGATCAT 60.691 57.895 0.00 0.00 0.00 2.45
410 411 1.070445 CCACTCCCGCCTGATCATC 59.930 63.158 0.00 0.00 0.00 2.92
411 412 1.300465 CACTCCCGCCTGATCATCG 60.300 63.158 0.00 3.06 0.00 3.84
412 413 1.455773 ACTCCCGCCTGATCATCGA 60.456 57.895 16.18 0.00 0.00 3.59
413 414 1.043116 ACTCCCGCCTGATCATCGAA 61.043 55.000 16.18 5.98 0.00 3.71
414 415 0.319728 CTCCCGCCTGATCATCGAAT 59.680 55.000 16.18 0.00 0.00 3.34
415 416 0.318441 TCCCGCCTGATCATCGAATC 59.682 55.000 16.18 0.00 0.00 2.52
416 417 0.033920 CCCGCCTGATCATCGAATCA 59.966 55.000 16.18 0.00 34.55 2.57
417 418 1.143305 CCGCCTGATCATCGAATCAC 58.857 55.000 16.18 0.00 32.36 3.06
418 419 1.143305 CGCCTGATCATCGAATCACC 58.857 55.000 10.84 0.00 32.36 4.02
419 420 1.269988 CGCCTGATCATCGAATCACCT 60.270 52.381 10.84 0.00 32.36 4.00
420 421 2.029918 CGCCTGATCATCGAATCACCTA 60.030 50.000 10.84 0.00 32.36 3.08
421 422 3.552890 CGCCTGATCATCGAATCACCTAA 60.553 47.826 10.84 0.00 32.36 2.69
422 423 4.380531 GCCTGATCATCGAATCACCTAAA 58.619 43.478 0.00 0.00 32.36 1.85
423 424 4.450419 GCCTGATCATCGAATCACCTAAAG 59.550 45.833 0.00 0.00 32.36 1.85
424 425 5.605534 CCTGATCATCGAATCACCTAAAGT 58.394 41.667 0.00 0.00 32.36 2.66
425 426 6.051717 CCTGATCATCGAATCACCTAAAGTT 58.948 40.000 0.00 0.00 32.36 2.66
426 427 6.540189 CCTGATCATCGAATCACCTAAAGTTT 59.460 38.462 0.00 0.00 32.36 2.66
427 428 7.710907 CCTGATCATCGAATCACCTAAAGTTTA 59.289 37.037 0.00 0.00 32.36 2.01
428 429 9.265901 CTGATCATCGAATCACCTAAAGTTTAT 57.734 33.333 0.00 0.00 32.36 1.40
429 430 9.261180 TGATCATCGAATCACCTAAAGTTTATC 57.739 33.333 0.00 0.00 30.76 1.75
430 431 8.608844 ATCATCGAATCACCTAAAGTTTATCC 57.391 34.615 0.00 0.00 0.00 2.59
431 432 7.792032 TCATCGAATCACCTAAAGTTTATCCT 58.208 34.615 0.00 0.00 0.00 3.24
432 433 8.920174 TCATCGAATCACCTAAAGTTTATCCTA 58.080 33.333 0.00 0.00 0.00 2.94
433 434 9.197694 CATCGAATCACCTAAAGTTTATCCTAG 57.802 37.037 0.00 0.00 0.00 3.02
434 435 7.723324 TCGAATCACCTAAAGTTTATCCTAGG 58.277 38.462 0.82 0.82 37.52 3.02
435 436 6.424207 CGAATCACCTAAAGTTTATCCTAGGC 59.576 42.308 2.96 0.00 35.30 3.93
436 437 5.272283 TCACCTAAAGTTTATCCTAGGCG 57.728 43.478 2.96 0.00 35.30 5.52
437 438 3.808174 CACCTAAAGTTTATCCTAGGCGC 59.192 47.826 2.96 0.00 35.30 6.53
438 439 3.181457 ACCTAAAGTTTATCCTAGGCGCC 60.181 47.826 21.89 21.89 35.30 6.53
439 440 2.343484 AAAGTTTATCCTAGGCGCCC 57.657 50.000 26.15 5.07 0.00 6.13
440 441 0.472898 AAGTTTATCCTAGGCGCCCC 59.527 55.000 26.15 0.00 0.00 5.80
441 442 1.072678 GTTTATCCTAGGCGCCCCC 59.927 63.158 26.15 0.00 0.00 5.40
455 456 2.765969 CCCCCACCACAGATGCTT 59.234 61.111 0.00 0.00 0.00 3.91
456 457 1.679977 CCCCCACCACAGATGCTTG 60.680 63.158 0.00 0.00 0.00 4.01
457 458 2.345760 CCCCACCACAGATGCTTGC 61.346 63.158 0.00 0.00 0.00 4.01
458 459 2.345760 CCCACCACAGATGCTTGCC 61.346 63.158 0.00 0.00 0.00 4.52
459 460 1.604308 CCACCACAGATGCTTGCCA 60.604 57.895 0.00 0.00 0.00 4.92
460 461 1.582968 CACCACAGATGCTTGCCAC 59.417 57.895 0.00 0.00 0.00 5.01
461 462 0.892358 CACCACAGATGCTTGCCACT 60.892 55.000 0.00 0.00 0.00 4.00
462 463 0.692476 ACCACAGATGCTTGCCACTA 59.308 50.000 0.00 0.00 0.00 2.74
463 464 1.089920 CCACAGATGCTTGCCACTAC 58.910 55.000 0.00 0.00 0.00 2.73
464 465 1.611410 CCACAGATGCTTGCCACTACA 60.611 52.381 0.00 0.00 0.00 2.74
465 466 2.153645 CACAGATGCTTGCCACTACAA 58.846 47.619 0.00 0.00 0.00 2.41
466 467 2.095567 CACAGATGCTTGCCACTACAAC 60.096 50.000 0.00 0.00 0.00 3.32
467 468 2.224621 ACAGATGCTTGCCACTACAACT 60.225 45.455 0.00 0.00 0.00 3.16
468 469 2.417933 CAGATGCTTGCCACTACAACTC 59.582 50.000 0.00 0.00 0.00 3.01
469 470 2.038952 AGATGCTTGCCACTACAACTCA 59.961 45.455 0.00 0.00 0.00 3.41
470 471 2.340210 TGCTTGCCACTACAACTCAA 57.660 45.000 0.00 0.00 0.00 3.02
471 472 2.649190 TGCTTGCCACTACAACTCAAA 58.351 42.857 0.00 0.00 0.00 2.69
472 473 3.020274 TGCTTGCCACTACAACTCAAAA 58.980 40.909 0.00 0.00 0.00 2.44
473 474 3.181491 TGCTTGCCACTACAACTCAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
474 475 3.181491 GCTTGCCACTACAACTCAAAACA 60.181 43.478 0.00 0.00 0.00 2.83
475 476 4.676723 GCTTGCCACTACAACTCAAAACAA 60.677 41.667 0.00 0.00 0.00 2.83
476 477 4.364415 TGCCACTACAACTCAAAACAAC 57.636 40.909 0.00 0.00 0.00 3.32
477 478 3.759086 TGCCACTACAACTCAAAACAACA 59.241 39.130 0.00 0.00 0.00 3.33
478 479 4.142491 TGCCACTACAACTCAAAACAACAG 60.142 41.667 0.00 0.00 0.00 3.16
479 480 4.351192 CCACTACAACTCAAAACAACAGC 58.649 43.478 0.00 0.00 0.00 4.40
480 481 4.351192 CACTACAACTCAAAACAACAGCC 58.649 43.478 0.00 0.00 0.00 4.85
481 482 2.959507 ACAACTCAAAACAACAGCCC 57.040 45.000 0.00 0.00 0.00 5.19
482 483 2.175202 ACAACTCAAAACAACAGCCCA 58.825 42.857 0.00 0.00 0.00 5.36
483 484 2.564947 ACAACTCAAAACAACAGCCCAA 59.435 40.909 0.00 0.00 0.00 4.12
484 485 3.197549 ACAACTCAAAACAACAGCCCAAT 59.802 39.130 0.00 0.00 0.00 3.16
485 486 3.733443 ACTCAAAACAACAGCCCAATC 57.267 42.857 0.00 0.00 0.00 2.67
486 487 3.030291 ACTCAAAACAACAGCCCAATCA 58.970 40.909 0.00 0.00 0.00 2.57
487 488 3.642848 ACTCAAAACAACAGCCCAATCAT 59.357 39.130 0.00 0.00 0.00 2.45
488 489 3.991773 CTCAAAACAACAGCCCAATCATG 59.008 43.478 0.00 0.00 0.00 3.07
489 490 2.460757 AAACAACAGCCCAATCATGC 57.539 45.000 0.00 0.00 0.00 4.06
490 491 1.340088 AACAACAGCCCAATCATGCA 58.660 45.000 0.00 0.00 0.00 3.96
491 492 0.604578 ACAACAGCCCAATCATGCAC 59.395 50.000 0.00 0.00 0.00 4.57
492 493 0.457166 CAACAGCCCAATCATGCACG 60.457 55.000 0.00 0.00 0.00 5.34
493 494 0.895100 AACAGCCCAATCATGCACGT 60.895 50.000 0.00 0.00 0.00 4.49
494 495 0.895100 ACAGCCCAATCATGCACGTT 60.895 50.000 0.00 0.00 0.00 3.99
495 496 0.457166 CAGCCCAATCATGCACGTTG 60.457 55.000 0.00 0.00 0.00 4.10
496 497 1.806758 GCCCAATCATGCACGTTGC 60.807 57.895 0.00 3.44 45.29 4.17
497 498 1.153784 CCCAATCATGCACGTTGCC 60.154 57.895 7.38 0.00 44.23 4.52
498 499 1.585517 CCAATCATGCACGTTGCCA 59.414 52.632 7.38 0.00 44.23 4.92
499 500 0.038435 CCAATCATGCACGTTGCCAA 60.038 50.000 7.38 0.00 44.23 4.52
500 501 1.342555 CAATCATGCACGTTGCCAAG 58.657 50.000 7.38 0.00 44.23 3.61
501 502 0.244450 AATCATGCACGTTGCCAAGG 59.756 50.000 7.38 0.00 44.23 3.61
502 503 2.216750 ATCATGCACGTTGCCAAGGC 62.217 55.000 3.61 3.61 44.23 4.35
503 504 3.683937 ATGCACGTTGCCAAGGCC 61.684 61.111 8.89 0.00 44.23 5.19
514 515 4.041762 CAAGGCCGCCCAAGGGTA 62.042 66.667 5.55 0.00 37.65 3.69
515 516 3.021263 AAGGCCGCCCAAGGGTAT 61.021 61.111 5.55 0.00 37.65 2.73
538 539 2.191513 CCAGGAGATGGCAATGGCG 61.192 63.158 1.51 0.00 43.83 5.69
552 553 2.363038 CAATGGCGATCACCCAATCAAT 59.637 45.455 6.22 0.00 35.67 2.57
566 576 3.524541 CAATCAATTAAGGTTGCCAGCC 58.475 45.455 0.00 0.00 0.00 4.85
567 577 1.555967 TCAATTAAGGTTGCCAGCCC 58.444 50.000 0.00 0.00 0.00 5.19
579 598 1.528824 CCAGCCCGGACAAGATCAT 59.471 57.895 0.73 0.00 36.56 2.45
583 602 1.153369 CCCGGACAAGATCATGCGT 60.153 57.895 0.73 0.00 0.00 5.24
585 604 0.374758 CCGGACAAGATCATGCGTTG 59.625 55.000 0.00 0.00 0.00 4.10
887 921 1.001406 CAGGTTCTTCTCCAGCTCGTT 59.999 52.381 0.00 0.00 0.00 3.85
1731 1765 2.029964 TTGGCGTCGGTGAAGGAC 59.970 61.111 0.00 0.00 0.00 3.85
2156 2216 7.672983 GAGAATCCATTCTACTGACAAACAA 57.327 36.000 1.66 0.00 46.47 2.83
2159 2219 8.352942 AGAATCCATTCTACTGACAAACAAAAC 58.647 33.333 0.00 0.00 44.80 2.43
2160 2220 7.581213 ATCCATTCTACTGACAAACAAAACA 57.419 32.000 0.00 0.00 0.00 2.83
2161 2221 7.026631 TCCATTCTACTGACAAACAAAACAG 57.973 36.000 0.00 0.00 36.58 3.16
2162 2222 6.826231 TCCATTCTACTGACAAACAAAACAGA 59.174 34.615 0.00 0.00 34.88 3.41
2178 2243 9.923786 AACAAAACAGAAAACAACAGTTAAAAC 57.076 25.926 0.00 0.00 0.00 2.43
2179 2244 8.270111 ACAAAACAGAAAACAACAGTTAAAACG 58.730 29.630 0.00 0.00 0.00 3.60
2188 2253 7.749539 AACAACAGTTAAAACGAATTTCAGG 57.250 32.000 0.00 0.00 32.27 3.86
2194 2259 7.230712 ACAGTTAAAACGAATTTCAGGAATCCT 59.769 33.333 0.00 0.00 32.27 3.24
2196 2261 8.727910 AGTTAAAACGAATTTCAGGAATCCTAC 58.272 33.333 0.00 0.00 32.27 3.18
2214 2279 5.661458 TCCTACGACAAGAATTCTGGAATC 58.339 41.667 17.08 3.76 0.00 2.52
2231 2322 5.240891 TGGAATCCGAGATGCAAATCTATC 58.759 41.667 0.00 0.00 0.00 2.08
2266 2357 4.958897 TCCCAAAACCCCGCACGG 62.959 66.667 1.02 1.02 0.00 4.94
2296 2387 2.022129 AACGAGCGAGCACGGAAAG 61.022 57.895 17.91 0.00 40.15 2.62
2302 2393 0.388134 GCGAGCACGGAAAGTACTGA 60.388 55.000 5.52 0.00 40.15 3.41
2315 2406 7.094506 ACGGAAAGTACTGAAAGAAAAACAGTT 60.095 33.333 0.00 0.00 43.27 3.16
2316 2407 7.753580 CGGAAAGTACTGAAAGAAAAACAGTTT 59.246 33.333 0.00 0.00 43.27 2.66
2328 2419 5.438761 AAAAACAGTTTTCCTCCGAGATG 57.561 39.130 11.77 0.00 30.96 2.90
2329 2420 3.771577 AACAGTTTTCCTCCGAGATGT 57.228 42.857 0.00 0.00 0.00 3.06
2334 2428 4.994852 CAGTTTTCCTCCGAGATGTAACAA 59.005 41.667 0.00 0.00 0.00 2.83
2342 2436 5.462530 TCCGAGATGTAACAAGACTGAAA 57.537 39.130 0.00 0.00 0.00 2.69
2343 2437 5.227908 TCCGAGATGTAACAAGACTGAAAC 58.772 41.667 0.00 0.00 0.00 2.78
2344 2438 4.988540 CCGAGATGTAACAAGACTGAAACA 59.011 41.667 0.00 0.00 0.00 2.83
2346 2440 6.346919 CCGAGATGTAACAAGACTGAAACAAG 60.347 42.308 0.00 0.00 0.00 3.16
2347 2441 6.420903 CGAGATGTAACAAGACTGAAACAAGA 59.579 38.462 0.00 0.00 0.00 3.02
2348 2442 7.116948 CGAGATGTAACAAGACTGAAACAAGAT 59.883 37.037 0.00 0.00 0.00 2.40
2349 2443 8.682936 AGATGTAACAAGACTGAAACAAGATT 57.317 30.769 0.00 0.00 0.00 2.40
2350 2444 9.778741 AGATGTAACAAGACTGAAACAAGATTA 57.221 29.630 0.00 0.00 0.00 1.75
2362 2456 9.793259 ACTGAAACAAGATTATTTCTTCTACCA 57.207 29.630 0.00 0.00 42.98 3.25
2364 2458 9.793259 TGAAACAAGATTATTTCTTCTACCAGT 57.207 29.630 0.00 0.00 42.98 4.00
2366 2460 7.617041 ACAAGATTATTTCTTCTACCAGTGC 57.383 36.000 0.00 0.00 42.98 4.40
2367 2461 6.313905 ACAAGATTATTTCTTCTACCAGTGCG 59.686 38.462 0.00 0.00 42.98 5.34
2368 2462 6.222038 AGATTATTTCTTCTACCAGTGCGA 57.778 37.500 0.00 0.00 0.00 5.10
2369 2463 6.043411 AGATTATTTCTTCTACCAGTGCGAC 58.957 40.000 0.00 0.00 0.00 5.19
2370 2464 2.060326 TTTCTTCTACCAGTGCGACG 57.940 50.000 0.00 0.00 0.00 5.12
2371 2465 1.241165 TTCTTCTACCAGTGCGACGA 58.759 50.000 0.00 0.00 0.00 4.20
2372 2466 0.803117 TCTTCTACCAGTGCGACGAG 59.197 55.000 0.00 0.00 0.00 4.18
2387 2481 4.980805 GAGCCAACGACCGCACCA 62.981 66.667 0.00 0.00 0.00 4.17
2388 2482 4.988598 AGCCAACGACCGCACCAG 62.989 66.667 0.00 0.00 0.00 4.00
2390 2484 4.988598 CCAACGACCGCACCAGCT 62.989 66.667 0.00 0.00 39.10 4.24
2391 2485 3.414700 CAACGACCGCACCAGCTC 61.415 66.667 0.00 0.00 39.10 4.09
2392 2486 3.923864 AACGACCGCACCAGCTCA 61.924 61.111 0.00 0.00 39.10 4.26
2393 2487 3.865929 AACGACCGCACCAGCTCAG 62.866 63.158 0.00 0.00 39.10 3.35
2395 2489 4.767255 GACCGCACCAGCTCAGGG 62.767 72.222 0.00 0.00 39.10 4.45
2398 2492 4.020617 CGCACCAGCTCAGGGGAA 62.021 66.667 0.00 0.00 39.10 3.97
2399 2493 2.436109 GCACCAGCTCAGGGGAAA 59.564 61.111 0.00 0.00 37.91 3.13
2400 2494 1.228552 GCACCAGCTCAGGGGAAAA 60.229 57.895 0.00 0.00 37.91 2.29
2401 2495 1.527433 GCACCAGCTCAGGGGAAAAC 61.527 60.000 0.00 0.00 37.91 2.43
2402 2496 0.178992 CACCAGCTCAGGGGAAAACA 60.179 55.000 0.00 0.00 32.15 2.83
2403 2497 0.555769 ACCAGCTCAGGGGAAAACAA 59.444 50.000 0.00 0.00 0.00 2.83
2404 2498 1.147817 ACCAGCTCAGGGGAAAACAAT 59.852 47.619 0.00 0.00 0.00 2.71
2405 2499 2.250924 CCAGCTCAGGGGAAAACAATT 58.749 47.619 0.00 0.00 0.00 2.32
2406 2500 2.232208 CCAGCTCAGGGGAAAACAATTC 59.768 50.000 0.00 0.00 0.00 2.17
2407 2501 2.892852 CAGCTCAGGGGAAAACAATTCA 59.107 45.455 0.00 0.00 0.00 2.57
2408 2502 3.057033 CAGCTCAGGGGAAAACAATTCAG 60.057 47.826 0.00 0.00 0.00 3.02
2409 2503 2.353109 GCTCAGGGGAAAACAATTCAGC 60.353 50.000 0.00 0.00 0.00 4.26
2410 2504 1.885887 TCAGGGGAAAACAATTCAGCG 59.114 47.619 0.00 0.00 0.00 5.18
2411 2505 1.885887 CAGGGGAAAACAATTCAGCGA 59.114 47.619 0.00 0.00 0.00 4.93
2412 2506 1.886542 AGGGGAAAACAATTCAGCGAC 59.113 47.619 0.00 0.00 0.00 5.19
2413 2507 1.067846 GGGGAAAACAATTCAGCGACC 60.068 52.381 0.00 0.00 0.00 4.79
2414 2508 1.611491 GGGAAAACAATTCAGCGACCA 59.389 47.619 0.00 0.00 0.00 4.02
2415 2509 2.607038 GGGAAAACAATTCAGCGACCAC 60.607 50.000 0.00 0.00 0.00 4.16
2416 2510 2.293399 GGAAAACAATTCAGCGACCACT 59.707 45.455 0.00 0.00 0.00 4.00
2417 2511 3.300009 GAAAACAATTCAGCGACCACTG 58.700 45.455 0.00 0.00 39.12 3.66
2418 2512 2.254546 AACAATTCAGCGACCACTGA 57.745 45.000 0.00 0.00 44.84 3.41
2419 2513 1.800805 ACAATTCAGCGACCACTGAG 58.199 50.000 0.00 0.00 46.85 3.35
2420 2514 1.344438 ACAATTCAGCGACCACTGAGA 59.656 47.619 0.00 0.00 46.85 3.27
2421 2515 1.998315 CAATTCAGCGACCACTGAGAG 59.002 52.381 0.00 0.00 46.85 3.20
2422 2516 1.550327 ATTCAGCGACCACTGAGAGA 58.450 50.000 0.00 0.00 46.85 3.10
2423 2517 1.550327 TTCAGCGACCACTGAGAGAT 58.450 50.000 0.00 0.00 46.85 2.75
2424 2518 1.098869 TCAGCGACCACTGAGAGATC 58.901 55.000 0.00 0.00 41.72 2.75
2425 2519 0.813821 CAGCGACCACTGAGAGATCA 59.186 55.000 0.00 0.00 40.25 2.92
2426 2520 1.102154 AGCGACCACTGAGAGATCAG 58.898 55.000 3.76 3.76 43.03 2.90
2427 2521 1.098869 GCGACCACTGAGAGATCAGA 58.901 55.000 12.00 0.00 39.99 3.27
2428 2522 1.065401 GCGACCACTGAGAGATCAGAG 59.935 57.143 12.00 4.17 39.99 3.35
2429 2523 2.637947 CGACCACTGAGAGATCAGAGA 58.362 52.381 12.00 0.00 39.99 3.10
2430 2524 2.354510 CGACCACTGAGAGATCAGAGAC 59.645 54.545 12.00 3.25 39.99 3.36
2431 2525 2.687935 GACCACTGAGAGATCAGAGACC 59.312 54.545 12.00 0.00 39.99 3.85
2432 2526 1.675483 CCACTGAGAGATCAGAGACCG 59.325 57.143 12.00 0.00 39.99 4.79
2433 2527 1.065401 CACTGAGAGATCAGAGACCGC 59.935 57.143 12.00 0.00 39.99 5.68
2434 2528 0.667993 CTGAGAGATCAGAGACCGCC 59.332 60.000 0.00 0.00 39.99 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.744238 ACAACCAAAAGGTGCCATTAC 57.256 42.857 0.00 0.00 0.00 1.89
1 2 3.452627 ACAACAACCAAAAGGTGCCATTA 59.547 39.130 0.00 0.00 0.00 1.90
2 3 2.238395 ACAACAACCAAAAGGTGCCATT 59.762 40.909 0.00 0.00 0.00 3.16
3 4 1.836802 ACAACAACCAAAAGGTGCCAT 59.163 42.857 0.00 0.00 0.00 4.40
4 5 1.270907 ACAACAACCAAAAGGTGCCA 58.729 45.000 0.00 0.00 0.00 4.92
5 6 2.394930 AACAACAACCAAAAGGTGCC 57.605 45.000 0.00 0.00 0.00 5.01
6 7 6.508777 TCTAATAACAACAACCAAAAGGTGC 58.491 36.000 0.00 0.00 0.00 5.01
7 8 7.169140 GCTTCTAATAACAACAACCAAAAGGTG 59.831 37.037 0.00 0.00 0.00 4.00
8 9 7.069455 AGCTTCTAATAACAACAACCAAAAGGT 59.931 33.333 0.00 0.00 0.00 3.50
9 10 7.433680 AGCTTCTAATAACAACAACCAAAAGG 58.566 34.615 0.00 0.00 0.00 3.11
10 11 8.755018 CAAGCTTCTAATAACAACAACCAAAAG 58.245 33.333 0.00 0.00 0.00 2.27
11 12 8.470805 TCAAGCTTCTAATAACAACAACCAAAA 58.529 29.630 0.00 0.00 0.00 2.44
12 13 8.001881 TCAAGCTTCTAATAACAACAACCAAA 57.998 30.769 0.00 0.00 0.00 3.28
13 14 7.255451 CCTCAAGCTTCTAATAACAACAACCAA 60.255 37.037 0.00 0.00 0.00 3.67
14 15 6.206634 CCTCAAGCTTCTAATAACAACAACCA 59.793 38.462 0.00 0.00 0.00 3.67
15 16 6.349363 CCCTCAAGCTTCTAATAACAACAACC 60.349 42.308 0.00 0.00 0.00 3.77
16 17 6.206829 ACCCTCAAGCTTCTAATAACAACAAC 59.793 38.462 0.00 0.00 0.00 3.32
17 18 6.206634 CACCCTCAAGCTTCTAATAACAACAA 59.793 38.462 0.00 0.00 0.00 2.83
18 19 5.705441 CACCCTCAAGCTTCTAATAACAACA 59.295 40.000 0.00 0.00 0.00 3.33
19 20 5.392057 GCACCCTCAAGCTTCTAATAACAAC 60.392 44.000 0.00 0.00 0.00 3.32
20 21 4.700213 GCACCCTCAAGCTTCTAATAACAA 59.300 41.667 0.00 0.00 0.00 2.83
21 22 4.261801 GCACCCTCAAGCTTCTAATAACA 58.738 43.478 0.00 0.00 0.00 2.41
22 23 4.261801 TGCACCCTCAAGCTTCTAATAAC 58.738 43.478 0.00 0.00 0.00 1.89
23 24 4.517285 CTGCACCCTCAAGCTTCTAATAA 58.483 43.478 0.00 0.00 0.00 1.40
24 25 3.682718 GCTGCACCCTCAAGCTTCTAATA 60.683 47.826 0.00 0.00 0.00 0.98
25 26 2.943199 GCTGCACCCTCAAGCTTCTAAT 60.943 50.000 0.00 0.00 0.00 1.73
26 27 1.611673 GCTGCACCCTCAAGCTTCTAA 60.612 52.381 0.00 0.00 0.00 2.10
27 28 0.036010 GCTGCACCCTCAAGCTTCTA 60.036 55.000 0.00 0.00 0.00 2.10
28 29 1.303155 GCTGCACCCTCAAGCTTCT 60.303 57.895 0.00 0.00 0.00 2.85
29 30 1.174712 TTGCTGCACCCTCAAGCTTC 61.175 55.000 0.00 0.00 0.00 3.86
30 31 1.152694 TTGCTGCACCCTCAAGCTT 60.153 52.632 0.00 0.00 0.00 3.74
31 32 1.900498 GTTGCTGCACCCTCAAGCT 60.900 57.895 0.00 0.00 0.00 3.74
32 33 2.647297 GTTGCTGCACCCTCAAGC 59.353 61.111 0.00 0.00 0.00 4.01
33 34 2.620112 CGGTTGCTGCACCCTCAAG 61.620 63.158 14.53 0.00 32.48 3.02
34 35 2.594303 CGGTTGCTGCACCCTCAA 60.594 61.111 14.53 0.00 32.48 3.02
35 36 4.641645 CCGGTTGCTGCACCCTCA 62.642 66.667 14.53 0.00 32.48 3.86
40 41 3.605749 TAGCTCCCGGTTGCTGCAC 62.606 63.158 23.33 0.00 40.08 4.57
41 42 3.315142 CTAGCTCCCGGTTGCTGCA 62.315 63.158 23.33 0.00 40.08 4.41
42 43 2.512515 CTAGCTCCCGGTTGCTGC 60.513 66.667 23.33 10.18 40.08 5.25
43 44 2.512515 GCTAGCTCCCGGTTGCTG 60.513 66.667 23.33 15.66 40.08 4.41
44 45 3.787001 GGCTAGCTCCCGGTTGCT 61.787 66.667 19.83 19.83 42.67 3.91
45 46 4.096003 TGGCTAGCTCCCGGTTGC 62.096 66.667 15.72 3.95 38.39 4.17
46 47 2.187946 CTGGCTAGCTCCCGGTTG 59.812 66.667 15.72 0.00 0.00 3.77
47 48 3.083997 CCTGGCTAGCTCCCGGTT 61.084 66.667 15.72 0.00 0.00 4.44
50 51 1.686325 TTAAGCCTGGCTAGCTCCCG 61.686 60.000 23.69 1.01 40.49 5.14
51 52 0.179043 GTTAAGCCTGGCTAGCTCCC 60.179 60.000 23.69 3.36 40.49 4.30
52 53 0.179043 GGTTAAGCCTGGCTAGCTCC 60.179 60.000 23.69 17.33 40.49 4.70
53 54 0.541863 TGGTTAAGCCTGGCTAGCTC 59.458 55.000 23.69 12.72 40.49 4.09
54 55 0.253327 GTGGTTAAGCCTGGCTAGCT 59.747 55.000 23.69 9.32 44.19 3.32
55 56 0.748367 GGTGGTTAAGCCTGGCTAGC 60.748 60.000 23.69 17.30 38.25 3.42
56 57 0.462047 CGGTGGTTAAGCCTGGCTAG 60.462 60.000 23.69 2.58 38.25 3.42
57 58 1.600107 CGGTGGTTAAGCCTGGCTA 59.400 57.895 23.69 3.90 38.25 3.93
58 59 2.351276 CGGTGGTTAAGCCTGGCT 59.649 61.111 17.22 17.22 42.56 4.75
59 60 2.750237 CCGGTGGTTAAGCCTGGC 60.750 66.667 11.65 11.65 38.35 4.85
60 61 2.750237 GCCGGTGGTTAAGCCTGG 60.750 66.667 1.90 13.61 38.35 4.45
61 62 3.124921 CGCCGGTGGTTAAGCCTG 61.125 66.667 7.26 0.00 38.35 4.85
62 63 4.404098 CCGCCGGTGGTTAAGCCT 62.404 66.667 26.60 0.00 38.35 4.58
65 66 2.359478 AAGCCGCCGGTGGTTAAG 60.359 61.111 33.67 9.92 0.00 1.85
66 67 2.670251 CAAGCCGCCGGTGGTTAA 60.670 61.111 33.67 0.00 0.00 2.01
67 68 4.708386 CCAAGCCGCCGGTGGTTA 62.708 66.667 33.67 0.00 0.00 2.85
71 72 3.814268 CATTCCAAGCCGCCGGTG 61.814 66.667 8.42 8.42 0.00 4.94
72 73 3.344137 ATCATTCCAAGCCGCCGGT 62.344 57.895 4.45 0.00 0.00 5.28
73 74 2.516930 ATCATTCCAAGCCGCCGG 60.517 61.111 0.00 0.00 0.00 6.13
74 75 2.546494 GGATCATTCCAAGCCGCCG 61.546 63.158 0.00 0.00 42.12 6.46
75 76 3.436728 GGATCATTCCAAGCCGCC 58.563 61.111 0.00 0.00 42.12 6.13
83 84 2.113986 CCCGCCCTGGATCATTCC 59.886 66.667 0.00 0.00 42.00 3.01
84 85 2.595754 GCCCGCCCTGGATCATTC 60.596 66.667 0.00 0.00 42.00 2.67
85 86 3.419580 TGCCCGCCCTGGATCATT 61.420 61.111 0.00 0.00 42.00 2.57
86 87 3.882326 CTGCCCGCCCTGGATCAT 61.882 66.667 0.00 0.00 42.00 2.45
96 97 3.061848 TTTAAGCTGCCTGCCCGC 61.062 61.111 0.00 0.00 44.23 6.13
97 98 1.315257 ATGTTTAAGCTGCCTGCCCG 61.315 55.000 0.00 0.00 44.23 6.13
98 99 0.897621 AATGTTTAAGCTGCCTGCCC 59.102 50.000 0.00 0.00 44.23 5.36
99 100 1.404583 CCAATGTTTAAGCTGCCTGCC 60.405 52.381 0.00 0.00 44.23 4.85
100 101 2.000429 CCAATGTTTAAGCTGCCTGC 58.000 50.000 0.00 0.00 43.29 4.85
101 102 1.273048 TGCCAATGTTTAAGCTGCCTG 59.727 47.619 0.00 0.00 0.00 4.85
102 103 1.273327 GTGCCAATGTTTAAGCTGCCT 59.727 47.619 0.00 0.00 0.00 4.75
103 104 1.672737 GGTGCCAATGTTTAAGCTGCC 60.673 52.381 0.00 0.00 0.00 4.85
104 105 1.000731 TGGTGCCAATGTTTAAGCTGC 59.999 47.619 0.00 0.00 0.00 5.25
105 106 3.514645 GATGGTGCCAATGTTTAAGCTG 58.485 45.455 0.00 0.00 0.00 4.24
106 107 2.164219 CGATGGTGCCAATGTTTAAGCT 59.836 45.455 0.00 0.00 0.00 3.74
107 108 2.529151 CGATGGTGCCAATGTTTAAGC 58.471 47.619 0.00 0.00 0.00 3.09
108 109 2.094803 TGCGATGGTGCCAATGTTTAAG 60.095 45.455 0.00 0.00 0.00 1.85
109 110 1.889170 TGCGATGGTGCCAATGTTTAA 59.111 42.857 0.00 0.00 0.00 1.52
110 111 1.539157 TGCGATGGTGCCAATGTTTA 58.461 45.000 0.00 0.00 0.00 2.01
111 112 0.896923 ATGCGATGGTGCCAATGTTT 59.103 45.000 0.00 0.00 0.00 2.83
112 113 0.896923 AATGCGATGGTGCCAATGTT 59.103 45.000 0.00 0.00 0.00 2.71
113 114 1.405105 GTAATGCGATGGTGCCAATGT 59.595 47.619 0.00 0.00 0.00 2.71
114 115 1.597690 CGTAATGCGATGGTGCCAATG 60.598 52.381 0.00 0.00 44.77 2.82
115 116 0.662619 CGTAATGCGATGGTGCCAAT 59.337 50.000 0.00 0.00 44.77 3.16
116 117 1.987704 GCGTAATGCGATGGTGCCAA 61.988 55.000 0.00 0.00 44.77 4.52
117 118 2.468670 GCGTAATGCGATGGTGCCA 61.469 57.895 0.00 0.00 44.77 4.92
118 119 2.327940 GCGTAATGCGATGGTGCC 59.672 61.111 0.00 0.00 44.77 5.01
127 128 3.113322 TGTCTTATCTGTCGCGTAATGC 58.887 45.455 5.77 0.00 41.47 3.56
128 129 4.438145 GTCTGTCTTATCTGTCGCGTAATG 59.562 45.833 5.77 0.00 0.00 1.90
129 130 4.599047 GTCTGTCTTATCTGTCGCGTAAT 58.401 43.478 5.77 0.00 0.00 1.89
130 131 3.484721 CGTCTGTCTTATCTGTCGCGTAA 60.485 47.826 5.77 0.00 0.00 3.18
131 132 2.030091 CGTCTGTCTTATCTGTCGCGTA 59.970 50.000 5.77 0.00 0.00 4.42
132 133 1.202043 CGTCTGTCTTATCTGTCGCGT 60.202 52.381 5.77 0.00 0.00 6.01
133 134 1.457738 CGTCTGTCTTATCTGTCGCG 58.542 55.000 0.00 0.00 0.00 5.87
134 135 1.828832 CCGTCTGTCTTATCTGTCGC 58.171 55.000 0.00 0.00 0.00 5.19
135 136 1.534175 GGCCGTCTGTCTTATCTGTCG 60.534 57.143 0.00 0.00 0.00 4.35
136 137 1.476891 TGGCCGTCTGTCTTATCTGTC 59.523 52.381 0.00 0.00 0.00 3.51
137 138 1.478510 CTGGCCGTCTGTCTTATCTGT 59.521 52.381 0.00 0.00 0.00 3.41
138 139 1.202463 CCTGGCCGTCTGTCTTATCTG 60.202 57.143 0.00 0.00 0.00 2.90
139 140 1.115467 CCTGGCCGTCTGTCTTATCT 58.885 55.000 0.00 0.00 0.00 1.98
140 141 1.067821 CTCCTGGCCGTCTGTCTTATC 59.932 57.143 0.00 0.00 0.00 1.75
141 142 1.115467 CTCCTGGCCGTCTGTCTTAT 58.885 55.000 0.00 0.00 0.00 1.73
142 143 0.970937 CCTCCTGGCCGTCTGTCTTA 60.971 60.000 0.00 0.00 0.00 2.10
143 144 2.286523 CCTCCTGGCCGTCTGTCTT 61.287 63.158 0.00 0.00 0.00 3.01
144 145 2.681778 CCTCCTGGCCGTCTGTCT 60.682 66.667 0.00 0.00 0.00 3.41
155 156 3.898509 CTCGCTCCTCGCCTCCTG 61.899 72.222 0.00 0.00 38.27 3.86
158 159 4.567385 CTGCTCGCTCCTCGCCTC 62.567 72.222 0.00 0.00 38.27 4.70
160 161 4.863925 GACTGCTCGCTCCTCGCC 62.864 72.222 0.00 0.00 38.27 5.54
162 163 3.447634 CTCGACTGCTCGCTCCTCG 62.448 68.421 0.00 0.00 39.96 4.63
163 164 2.407210 CTCGACTGCTCGCTCCTC 59.593 66.667 0.00 0.00 39.96 3.71
164 165 3.821055 GCTCGACTGCTCGCTCCT 61.821 66.667 0.00 0.00 39.96 3.69
165 166 3.633094 TTGCTCGACTGCTCGCTCC 62.633 63.158 0.00 0.00 39.96 4.70
166 167 1.080995 ATTTGCTCGACTGCTCGCTC 61.081 55.000 0.00 0.00 39.96 5.03
167 168 1.079543 ATTTGCTCGACTGCTCGCT 60.080 52.632 0.00 0.00 39.96 4.93
168 169 1.346538 GATTTGCTCGACTGCTCGC 59.653 57.895 0.00 0.00 39.96 5.03
169 170 0.737367 TGGATTTGCTCGACTGCTCG 60.737 55.000 0.00 0.00 41.65 5.03
170 171 1.005340 CTGGATTTGCTCGACTGCTC 58.995 55.000 0.00 0.00 0.00 4.26
171 172 1.023513 GCTGGATTTGCTCGACTGCT 61.024 55.000 0.00 0.00 0.00 4.24
172 173 1.300971 TGCTGGATTTGCTCGACTGC 61.301 55.000 0.00 0.00 0.00 4.40
173 174 0.445436 GTGCTGGATTTGCTCGACTG 59.555 55.000 0.00 0.00 0.00 3.51
174 175 0.674895 GGTGCTGGATTTGCTCGACT 60.675 55.000 0.00 0.00 0.00 4.18
175 176 0.955428 TGGTGCTGGATTTGCTCGAC 60.955 55.000 0.00 0.00 0.00 4.20
176 177 0.674581 CTGGTGCTGGATTTGCTCGA 60.675 55.000 0.00 0.00 0.00 4.04
177 178 1.798735 CTGGTGCTGGATTTGCTCG 59.201 57.895 0.00 0.00 0.00 5.03
178 179 1.246056 TGCTGGTGCTGGATTTGCTC 61.246 55.000 0.00 0.00 40.48 4.26
179 180 1.228644 TGCTGGTGCTGGATTTGCT 60.229 52.632 0.00 0.00 40.48 3.91
180 181 1.080298 GTGCTGGTGCTGGATTTGC 60.080 57.895 0.00 0.00 40.48 3.68
181 182 1.210931 CGTGCTGGTGCTGGATTTG 59.789 57.895 0.00 0.00 40.48 2.32
182 183 0.036164 TACGTGCTGGTGCTGGATTT 59.964 50.000 0.00 0.00 40.48 2.17
183 184 0.673644 GTACGTGCTGGTGCTGGATT 60.674 55.000 0.00 0.00 40.48 3.01
184 185 1.079127 GTACGTGCTGGTGCTGGAT 60.079 57.895 0.00 0.00 40.48 3.41
185 186 2.342279 GTACGTGCTGGTGCTGGA 59.658 61.111 0.00 0.00 40.48 3.86
186 187 3.112075 CGTACGTGCTGGTGCTGG 61.112 66.667 7.22 0.00 40.48 4.85
187 188 3.777925 GCGTACGTGCTGGTGCTG 61.778 66.667 17.90 0.00 40.48 4.41
188 189 4.293648 TGCGTACGTGCTGGTGCT 62.294 61.111 17.90 0.00 40.48 4.40
189 190 3.777925 CTGCGTACGTGCTGGTGC 61.778 66.667 17.90 0.00 40.20 5.01
190 191 2.049526 TCTGCGTACGTGCTGGTG 60.050 61.111 17.90 0.12 34.88 4.17
191 192 2.258591 CTCTGCGTACGTGCTGGT 59.741 61.111 17.90 0.00 34.88 4.00
192 193 2.507102 CCTCTGCGTACGTGCTGG 60.507 66.667 17.90 10.67 34.88 4.85
193 194 2.507102 CCCTCTGCGTACGTGCTG 60.507 66.667 17.90 5.25 35.36 4.41
194 195 4.436998 GCCCTCTGCGTACGTGCT 62.437 66.667 17.90 0.00 35.36 4.40
195 196 2.622903 TATGCCCTCTGCGTACGTGC 62.623 60.000 17.90 10.46 45.60 5.34
196 197 0.032130 ATATGCCCTCTGCGTACGTG 59.968 55.000 17.90 10.40 44.02 4.49
197 198 1.612676 TATATGCCCTCTGCGTACGT 58.387 50.000 17.90 0.00 44.02 3.57
198 199 2.717580 TTATATGCCCTCTGCGTACG 57.282 50.000 11.84 11.84 44.02 3.67
211 212 1.888512 GTGGGGGTGCAGCATTATATG 59.111 52.381 19.06 0.00 0.00 1.78
212 213 1.498576 TGTGGGGGTGCAGCATTATAT 59.501 47.619 19.06 0.00 0.00 0.86
213 214 0.922626 TGTGGGGGTGCAGCATTATA 59.077 50.000 19.06 0.00 0.00 0.98
214 215 0.684153 GTGTGGGGGTGCAGCATTAT 60.684 55.000 19.06 0.00 0.00 1.28
215 216 1.304052 GTGTGGGGGTGCAGCATTA 60.304 57.895 19.06 0.00 0.00 1.90
216 217 2.601367 GTGTGGGGGTGCAGCATT 60.601 61.111 19.06 0.00 0.00 3.56
217 218 4.684134 GGTGTGGGGGTGCAGCAT 62.684 66.667 19.06 0.00 33.77 3.79
225 226 4.127744 ATCATGCGGGTGTGGGGG 62.128 66.667 0.00 0.00 0.00 5.40
226 227 2.629424 ATCATCATGCGGGTGTGGGG 62.629 60.000 0.00 0.00 0.00 4.96
227 228 0.108396 TATCATCATGCGGGTGTGGG 59.892 55.000 0.00 0.00 0.00 4.61
228 229 1.070601 TCTATCATCATGCGGGTGTGG 59.929 52.381 0.00 0.00 0.00 4.17
229 230 2.138320 GTCTATCATCATGCGGGTGTG 58.862 52.381 0.00 0.00 0.00 3.82
230 231 2.042464 AGTCTATCATCATGCGGGTGT 58.958 47.619 0.00 0.00 0.00 4.16
231 232 2.036346 TCAGTCTATCATCATGCGGGTG 59.964 50.000 0.00 0.00 0.00 4.61
232 233 2.319844 TCAGTCTATCATCATGCGGGT 58.680 47.619 0.00 0.00 0.00 5.28
233 234 3.259902 CATCAGTCTATCATCATGCGGG 58.740 50.000 0.00 0.00 0.00 6.13
234 235 3.056322 TCCATCAGTCTATCATCATGCGG 60.056 47.826 0.00 0.00 0.00 5.69
235 236 4.184079 TCCATCAGTCTATCATCATGCG 57.816 45.455 0.00 0.00 0.00 4.73
236 237 6.171213 TGATTCCATCAGTCTATCATCATGC 58.829 40.000 0.00 0.00 33.59 4.06
237 238 8.794335 ATTGATTCCATCAGTCTATCATCATG 57.206 34.615 0.00 0.00 40.94 3.07
238 239 8.047911 GGATTGATTCCATCAGTCTATCATCAT 58.952 37.037 8.60 0.00 43.25 2.45
239 240 7.392418 GGATTGATTCCATCAGTCTATCATCA 58.608 38.462 8.60 0.00 43.25 3.07
240 241 6.534436 CGGATTGATTCCATCAGTCTATCATC 59.466 42.308 8.60 0.00 45.78 2.92
241 242 6.013898 ACGGATTGATTCCATCAGTCTATCAT 60.014 38.462 8.60 0.00 45.78 2.45
242 243 5.305386 ACGGATTGATTCCATCAGTCTATCA 59.695 40.000 8.60 0.00 45.78 2.15
243 244 5.788450 ACGGATTGATTCCATCAGTCTATC 58.212 41.667 8.60 0.20 45.78 2.08
244 245 5.815233 ACGGATTGATTCCATCAGTCTAT 57.185 39.130 8.60 0.00 45.78 1.98
245 246 5.453339 GGAACGGATTGATTCCATCAGTCTA 60.453 44.000 8.60 0.00 45.78 2.59
246 247 4.446371 GAACGGATTGATTCCATCAGTCT 58.554 43.478 8.60 0.00 45.78 3.24
247 248 3.561725 GGAACGGATTGATTCCATCAGTC 59.438 47.826 4.44 1.58 45.78 3.51
248 249 3.545703 GGAACGGATTGATTCCATCAGT 58.454 45.455 0.70 0.00 45.78 3.41
265 266 3.319198 TCCACTCCAGGCCGGAAC 61.319 66.667 5.05 0.00 45.75 3.62
266 267 3.319198 GTCCACTCCAGGCCGGAA 61.319 66.667 5.05 0.66 45.75 4.30
267 268 4.631740 TGTCCACTCCAGGCCGGA 62.632 66.667 5.05 14.41 43.61 5.14
268 269 3.636231 TTGTCCACTCCAGGCCGG 61.636 66.667 0.00 0.00 0.00 6.13
269 270 2.358737 GTTGTCCACTCCAGGCCG 60.359 66.667 0.00 0.00 0.00 6.13
270 271 1.823169 TACGTTGTCCACTCCAGGCC 61.823 60.000 0.00 0.00 0.00 5.19
271 272 0.034337 TTACGTTGTCCACTCCAGGC 59.966 55.000 0.00 0.00 0.00 4.85
272 273 1.343465 ACTTACGTTGTCCACTCCAGG 59.657 52.381 0.00 0.00 0.00 4.45
273 274 2.035449 TCACTTACGTTGTCCACTCCAG 59.965 50.000 0.00 0.00 0.00 3.86
274 275 2.033372 TCACTTACGTTGTCCACTCCA 58.967 47.619 0.00 0.00 0.00 3.86
275 276 2.295349 TCTCACTTACGTTGTCCACTCC 59.705 50.000 0.00 0.00 0.00 3.85
276 277 3.637998 TCTCACTTACGTTGTCCACTC 57.362 47.619 0.00 0.00 0.00 3.51
277 278 3.635373 TCTTCTCACTTACGTTGTCCACT 59.365 43.478 0.00 0.00 0.00 4.00
278 279 3.973657 TCTTCTCACTTACGTTGTCCAC 58.026 45.455 0.00 0.00 0.00 4.02
279 280 4.659111 TTCTTCTCACTTACGTTGTCCA 57.341 40.909 0.00 0.00 0.00 4.02
280 281 4.084485 GCTTTCTTCTCACTTACGTTGTCC 60.084 45.833 0.00 0.00 0.00 4.02
281 282 4.745620 AGCTTTCTTCTCACTTACGTTGTC 59.254 41.667 0.00 0.00 0.00 3.18
282 283 4.694339 AGCTTTCTTCTCACTTACGTTGT 58.306 39.130 0.00 0.00 0.00 3.32
283 284 5.435557 CAAGCTTTCTTCTCACTTACGTTG 58.564 41.667 0.00 0.00 0.00 4.10
284 285 4.511826 CCAAGCTTTCTTCTCACTTACGTT 59.488 41.667 0.00 0.00 0.00 3.99
285 286 4.058817 CCAAGCTTTCTTCTCACTTACGT 58.941 43.478 0.00 0.00 0.00 3.57
286 287 4.150804 GTCCAAGCTTTCTTCTCACTTACG 59.849 45.833 0.00 0.00 0.00 3.18
287 288 5.178438 CAGTCCAAGCTTTCTTCTCACTTAC 59.822 44.000 0.00 0.00 0.00 2.34
288 289 5.070446 TCAGTCCAAGCTTTCTTCTCACTTA 59.930 40.000 0.00 0.00 0.00 2.24
289 290 4.133078 CAGTCCAAGCTTTCTTCTCACTT 58.867 43.478 0.00 0.00 0.00 3.16
290 291 3.389329 TCAGTCCAAGCTTTCTTCTCACT 59.611 43.478 0.00 0.00 0.00 3.41
291 292 3.496507 GTCAGTCCAAGCTTTCTTCTCAC 59.503 47.826 0.00 0.00 0.00 3.51
292 293 3.495100 GGTCAGTCCAAGCTTTCTTCTCA 60.495 47.826 0.00 0.00 35.97 3.27
293 294 3.070748 GGTCAGTCCAAGCTTTCTTCTC 58.929 50.000 0.00 0.00 35.97 2.87
294 295 2.224646 GGGTCAGTCCAAGCTTTCTTCT 60.225 50.000 0.00 0.00 38.11 2.85
295 296 2.155279 GGGTCAGTCCAAGCTTTCTTC 58.845 52.381 0.00 0.00 38.11 2.87
296 297 1.494721 TGGGTCAGTCCAAGCTTTCTT 59.505 47.619 0.00 0.00 38.11 2.52
297 298 1.072965 CTGGGTCAGTCCAAGCTTTCT 59.927 52.381 0.00 0.00 36.21 2.52
298 299 1.072331 TCTGGGTCAGTCCAAGCTTTC 59.928 52.381 0.00 0.00 37.18 2.62
299 300 1.140312 TCTGGGTCAGTCCAAGCTTT 58.860 50.000 0.00 0.00 37.18 3.51
300 301 1.140312 TTCTGGGTCAGTCCAAGCTT 58.860 50.000 0.00 0.00 37.18 3.74
301 302 1.140312 TTTCTGGGTCAGTCCAAGCT 58.860 50.000 0.00 0.00 37.18 3.74
302 303 1.815003 CATTTCTGGGTCAGTCCAAGC 59.185 52.381 0.00 0.00 37.18 4.01
303 304 3.423539 TCATTTCTGGGTCAGTCCAAG 57.576 47.619 0.00 0.00 38.60 3.61
304 305 3.561960 CCATCATTTCTGGGTCAGTCCAA 60.562 47.826 0.00 0.00 36.21 3.53
305 306 2.025981 CCATCATTTCTGGGTCAGTCCA 60.026 50.000 0.00 0.00 38.11 4.02
306 307 2.239654 TCCATCATTTCTGGGTCAGTCC 59.760 50.000 0.00 0.00 34.36 3.85
307 308 3.634397 TCCATCATTTCTGGGTCAGTC 57.366 47.619 0.00 0.00 34.36 3.51
308 309 3.117738 GGATCCATCATTTCTGGGTCAGT 60.118 47.826 6.95 0.00 44.35 3.41
309 310 3.137913 AGGATCCATCATTTCTGGGTCAG 59.862 47.826 15.82 0.00 44.35 3.51
310 311 3.125656 AGGATCCATCATTTCTGGGTCA 58.874 45.455 15.82 0.00 44.35 4.02
311 312 3.872459 AGGATCCATCATTTCTGGGTC 57.128 47.619 15.82 0.00 42.24 4.46
312 313 5.373555 TGATTAGGATCCATCATTTCTGGGT 59.626 40.000 15.82 0.00 34.36 4.51
313 314 5.709164 GTGATTAGGATCCATCATTTCTGGG 59.291 44.000 15.82 0.00 34.36 4.45
314 315 5.410746 CGTGATTAGGATCCATCATTTCTGG 59.589 44.000 15.82 0.00 32.07 3.86
315 316 5.994054 ACGTGATTAGGATCCATCATTTCTG 59.006 40.000 15.82 6.99 32.07 3.02
316 317 6.179906 ACGTGATTAGGATCCATCATTTCT 57.820 37.500 15.82 0.00 32.07 2.52
317 318 6.867662 AACGTGATTAGGATCCATCATTTC 57.132 37.500 15.82 3.19 32.07 2.17
318 319 8.746052 TTTAACGTGATTAGGATCCATCATTT 57.254 30.769 15.82 13.72 32.07 2.32
319 320 8.621286 GTTTTAACGTGATTAGGATCCATCATT 58.379 33.333 15.82 9.76 32.07 2.57
320 321 7.773224 TGTTTTAACGTGATTAGGATCCATCAT 59.227 33.333 15.82 1.93 32.07 2.45
321 322 7.106890 TGTTTTAACGTGATTAGGATCCATCA 58.893 34.615 15.82 12.50 0.00 3.07
322 323 7.548196 TGTTTTAACGTGATTAGGATCCATC 57.452 36.000 15.82 9.81 0.00 3.51
323 324 7.931578 TTGTTTTAACGTGATTAGGATCCAT 57.068 32.000 15.82 0.00 0.00 3.41
324 325 7.571613 CGTTTGTTTTAACGTGATTAGGATCCA 60.572 37.037 15.82 0.00 44.28 3.41
325 326 6.739550 CGTTTGTTTTAACGTGATTAGGATCC 59.260 38.462 2.48 2.48 44.28 3.36
326 327 7.700611 CGTTTGTTTTAACGTGATTAGGATC 57.299 36.000 0.00 0.00 44.28 3.36
338 339 7.136119 TCATGTGAGATTCCGTTTGTTTTAAC 58.864 34.615 0.00 0.00 0.00 2.01
339 340 7.265647 TCATGTGAGATTCCGTTTGTTTTAA 57.734 32.000 0.00 0.00 0.00 1.52
340 341 6.869315 TCATGTGAGATTCCGTTTGTTTTA 57.131 33.333 0.00 0.00 0.00 1.52
341 342 5.766150 TCATGTGAGATTCCGTTTGTTTT 57.234 34.783 0.00 0.00 0.00 2.43
342 343 5.766150 TTCATGTGAGATTCCGTTTGTTT 57.234 34.783 0.00 0.00 0.00 2.83
343 344 5.519722 GTTTCATGTGAGATTCCGTTTGTT 58.480 37.500 0.00 0.00 0.00 2.83
344 345 4.319477 CGTTTCATGTGAGATTCCGTTTGT 60.319 41.667 0.00 0.00 0.00 2.83
345 346 4.151070 CGTTTCATGTGAGATTCCGTTTG 58.849 43.478 0.00 0.00 0.00 2.93
346 347 3.364964 GCGTTTCATGTGAGATTCCGTTT 60.365 43.478 0.00 0.00 0.00 3.60
347 348 2.159627 GCGTTTCATGTGAGATTCCGTT 59.840 45.455 0.00 0.00 0.00 4.44
348 349 1.732259 GCGTTTCATGTGAGATTCCGT 59.268 47.619 0.00 0.00 0.00 4.69
349 350 1.267038 CGCGTTTCATGTGAGATTCCG 60.267 52.381 0.00 0.00 0.00 4.30
350 351 1.062587 CCGCGTTTCATGTGAGATTCC 59.937 52.381 4.92 0.00 0.00 3.01
351 352 1.999735 TCCGCGTTTCATGTGAGATTC 59.000 47.619 4.92 0.00 0.00 2.52
352 353 2.093306 TCCGCGTTTCATGTGAGATT 57.907 45.000 4.92 0.00 0.00 2.40
353 354 2.315925 ATCCGCGTTTCATGTGAGAT 57.684 45.000 4.92 0.00 0.00 2.75
354 355 2.093306 AATCCGCGTTTCATGTGAGA 57.907 45.000 4.92 0.00 0.00 3.27
355 356 2.416547 AGAAATCCGCGTTTCATGTGAG 59.583 45.455 20.19 0.00 39.88 3.51
356 357 2.422597 AGAAATCCGCGTTTCATGTGA 58.577 42.857 20.19 2.78 39.88 3.58
357 358 2.900122 AGAAATCCGCGTTTCATGTG 57.100 45.000 20.19 0.00 39.88 3.21
358 359 3.365969 GGAAAGAAATCCGCGTTTCATGT 60.366 43.478 20.19 8.00 39.88 3.21
359 360 3.171277 GGAAAGAAATCCGCGTTTCATG 58.829 45.455 20.19 0.00 39.88 3.07
360 361 2.163613 GGGAAAGAAATCCGCGTTTCAT 59.836 45.455 20.19 9.00 40.62 2.57
361 362 1.538075 GGGAAAGAAATCCGCGTTTCA 59.462 47.619 20.19 0.00 40.62 2.69
362 363 1.135489 GGGGAAAGAAATCCGCGTTTC 60.135 52.381 12.78 12.78 41.80 2.78
363 364 0.885879 GGGGAAAGAAATCCGCGTTT 59.114 50.000 4.92 0.00 41.80 3.60
364 365 2.563297 GGGGAAAGAAATCCGCGTT 58.437 52.632 4.92 0.00 41.80 4.84
365 366 4.313819 GGGGAAAGAAATCCGCGT 57.686 55.556 4.92 0.00 41.80 6.01
368 369 2.435372 TGGATGGGGAAAGAAATCCG 57.565 50.000 0.00 0.00 41.32 4.18
369 370 4.100035 GTGATTGGATGGGGAAAGAAATCC 59.900 45.833 0.00 0.00 39.28 3.01
370 371 4.100035 GGTGATTGGATGGGGAAAGAAATC 59.900 45.833 0.00 0.00 0.00 2.17
371 372 4.033009 GGTGATTGGATGGGGAAAGAAAT 58.967 43.478 0.00 0.00 0.00 2.17
372 373 3.181413 TGGTGATTGGATGGGGAAAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
373 374 2.381618 TGGTGATTGGATGGGGAAAGAA 59.618 45.455 0.00 0.00 0.00 2.52
374 375 1.999295 TGGTGATTGGATGGGGAAAGA 59.001 47.619 0.00 0.00 0.00 2.52
375 376 2.102578 GTGGTGATTGGATGGGGAAAG 58.897 52.381 0.00 0.00 0.00 2.62
376 377 1.715931 AGTGGTGATTGGATGGGGAAA 59.284 47.619 0.00 0.00 0.00 3.13
377 378 1.284785 GAGTGGTGATTGGATGGGGAA 59.715 52.381 0.00 0.00 0.00 3.97
378 379 0.918983 GAGTGGTGATTGGATGGGGA 59.081 55.000 0.00 0.00 0.00 4.81
379 380 0.106519 GGAGTGGTGATTGGATGGGG 60.107 60.000 0.00 0.00 0.00 4.96
380 381 0.106519 GGGAGTGGTGATTGGATGGG 60.107 60.000 0.00 0.00 0.00 4.00
381 382 0.464373 CGGGAGTGGTGATTGGATGG 60.464 60.000 0.00 0.00 0.00 3.51
382 383 1.097547 GCGGGAGTGGTGATTGGATG 61.098 60.000 0.00 0.00 0.00 3.51
383 384 1.224592 GCGGGAGTGGTGATTGGAT 59.775 57.895 0.00 0.00 0.00 3.41
384 385 2.668632 GCGGGAGTGGTGATTGGA 59.331 61.111 0.00 0.00 0.00 3.53
385 386 2.438434 GGCGGGAGTGGTGATTGG 60.438 66.667 0.00 0.00 0.00 3.16
386 387 1.746615 CAGGCGGGAGTGGTGATTG 60.747 63.158 0.00 0.00 0.00 2.67
387 388 1.274703 ATCAGGCGGGAGTGGTGATT 61.275 55.000 0.00 0.00 0.00 2.57
388 389 1.690219 GATCAGGCGGGAGTGGTGAT 61.690 60.000 0.00 0.00 0.00 3.06
389 390 2.284625 ATCAGGCGGGAGTGGTGA 60.285 61.111 0.00 0.00 0.00 4.02
390 391 1.976132 ATGATCAGGCGGGAGTGGTG 61.976 60.000 0.09 0.00 0.00 4.17
391 392 1.690219 GATGATCAGGCGGGAGTGGT 61.690 60.000 0.09 0.00 0.00 4.16
392 393 1.070445 GATGATCAGGCGGGAGTGG 59.930 63.158 0.09 0.00 0.00 4.00
393 394 1.300465 CGATGATCAGGCGGGAGTG 60.300 63.158 11.67 0.00 0.00 3.51
394 395 1.043116 TTCGATGATCAGGCGGGAGT 61.043 55.000 17.39 0.00 0.00 3.85
395 396 0.319728 ATTCGATGATCAGGCGGGAG 59.680 55.000 17.39 0.00 0.00 4.30
396 397 0.318441 GATTCGATGATCAGGCGGGA 59.682 55.000 17.39 9.44 0.00 5.14
397 398 0.033920 TGATTCGATGATCAGGCGGG 59.966 55.000 17.39 0.00 32.50 6.13
398 399 1.143305 GTGATTCGATGATCAGGCGG 58.857 55.000 17.39 0.84 36.76 6.13
399 400 1.143305 GGTGATTCGATGATCAGGCG 58.857 55.000 12.95 12.95 36.76 5.52
400 401 2.540265 AGGTGATTCGATGATCAGGC 57.460 50.000 0.09 0.00 36.76 4.85
401 402 5.605534 ACTTTAGGTGATTCGATGATCAGG 58.394 41.667 0.09 0.00 36.76 3.86
402 403 7.545362 AAACTTTAGGTGATTCGATGATCAG 57.455 36.000 0.09 0.00 36.76 2.90
403 404 9.261180 GATAAACTTTAGGTGATTCGATGATCA 57.739 33.333 0.00 0.00 33.81 2.92
404 405 8.713271 GGATAAACTTTAGGTGATTCGATGATC 58.287 37.037 0.00 0.00 0.00 2.92
405 406 8.432805 AGGATAAACTTTAGGTGATTCGATGAT 58.567 33.333 0.00 0.00 0.00 2.45
406 407 7.792032 AGGATAAACTTTAGGTGATTCGATGA 58.208 34.615 0.00 0.00 0.00 2.92
407 408 9.197694 CTAGGATAAACTTTAGGTGATTCGATG 57.802 37.037 0.00 0.00 0.00 3.84
408 409 8.368668 CCTAGGATAAACTTTAGGTGATTCGAT 58.631 37.037 1.05 0.00 0.00 3.59
409 410 7.686127 GCCTAGGATAAACTTTAGGTGATTCGA 60.686 40.741 14.75 0.00 36.02 3.71
410 411 6.424207 GCCTAGGATAAACTTTAGGTGATTCG 59.576 42.308 14.75 0.00 36.02 3.34
411 412 6.424207 CGCCTAGGATAAACTTTAGGTGATTC 59.576 42.308 14.75 0.00 43.29 2.52
412 413 6.289064 CGCCTAGGATAAACTTTAGGTGATT 58.711 40.000 14.75 0.00 43.29 2.57
413 414 5.742255 GCGCCTAGGATAAACTTTAGGTGAT 60.742 44.000 14.75 0.00 43.29 3.06
414 415 4.442472 GCGCCTAGGATAAACTTTAGGTGA 60.442 45.833 14.75 0.00 43.29 4.02
415 416 3.808174 GCGCCTAGGATAAACTTTAGGTG 59.192 47.826 14.75 5.77 43.41 4.00
416 417 3.181457 GGCGCCTAGGATAAACTTTAGGT 60.181 47.826 22.15 0.00 36.02 3.08
417 418 3.400255 GGCGCCTAGGATAAACTTTAGG 58.600 50.000 22.15 0.00 36.56 2.69
418 419 3.400255 GGGCGCCTAGGATAAACTTTAG 58.600 50.000 28.56 0.00 0.00 1.85
419 420 2.105306 GGGGCGCCTAGGATAAACTTTA 59.895 50.000 28.56 0.00 0.00 1.85
420 421 1.133884 GGGGCGCCTAGGATAAACTTT 60.134 52.381 28.56 0.00 0.00 2.66
421 422 0.472898 GGGGCGCCTAGGATAAACTT 59.527 55.000 28.56 0.00 0.00 2.66
422 423 1.416480 GGGGGCGCCTAGGATAAACT 61.416 60.000 28.56 0.00 0.00 2.66
423 424 1.072678 GGGGGCGCCTAGGATAAAC 59.927 63.158 28.56 5.59 0.00 2.01
424 425 3.571122 GGGGGCGCCTAGGATAAA 58.429 61.111 28.56 0.00 0.00 1.40
438 439 1.679977 CAAGCATCTGTGGTGGGGG 60.680 63.158 0.00 0.00 35.94 5.40
439 440 2.345760 GCAAGCATCTGTGGTGGGG 61.346 63.158 0.00 0.00 35.94 4.96
440 441 2.345760 GGCAAGCATCTGTGGTGGG 61.346 63.158 0.00 0.00 35.94 4.61
441 442 1.604308 TGGCAAGCATCTGTGGTGG 60.604 57.895 0.00 0.00 35.94 4.61
442 443 0.892358 AGTGGCAAGCATCTGTGGTG 60.892 55.000 0.00 0.00 35.94 4.17
443 444 0.692476 TAGTGGCAAGCATCTGTGGT 59.308 50.000 0.00 0.00 37.76 4.16
444 445 1.089920 GTAGTGGCAAGCATCTGTGG 58.910 55.000 0.00 0.00 0.00 4.17
445 446 1.812235 TGTAGTGGCAAGCATCTGTG 58.188 50.000 0.00 0.00 0.00 3.66
446 447 2.154462 GTTGTAGTGGCAAGCATCTGT 58.846 47.619 0.00 0.00 0.00 3.41
447 448 2.417933 GAGTTGTAGTGGCAAGCATCTG 59.582 50.000 0.00 0.00 0.00 2.90
448 449 2.038952 TGAGTTGTAGTGGCAAGCATCT 59.961 45.455 0.00 0.00 0.00 2.90
449 450 2.426522 TGAGTTGTAGTGGCAAGCATC 58.573 47.619 0.00 0.00 0.00 3.91
450 451 2.566833 TGAGTTGTAGTGGCAAGCAT 57.433 45.000 0.00 0.00 0.00 3.79
451 452 2.340210 TTGAGTTGTAGTGGCAAGCA 57.660 45.000 0.00 0.00 0.00 3.91
452 453 3.181491 TGTTTTGAGTTGTAGTGGCAAGC 60.181 43.478 0.00 0.00 0.00 4.01
453 454 4.630894 TGTTTTGAGTTGTAGTGGCAAG 57.369 40.909 0.00 0.00 0.00 4.01
454 455 4.218635 TGTTGTTTTGAGTTGTAGTGGCAA 59.781 37.500 0.00 0.00 0.00 4.52
455 456 3.759086 TGTTGTTTTGAGTTGTAGTGGCA 59.241 39.130 0.00 0.00 0.00 4.92
456 457 4.351192 CTGTTGTTTTGAGTTGTAGTGGC 58.649 43.478 0.00 0.00 0.00 5.01
457 458 4.351192 GCTGTTGTTTTGAGTTGTAGTGG 58.649 43.478 0.00 0.00 0.00 4.00
458 459 4.351192 GGCTGTTGTTTTGAGTTGTAGTG 58.649 43.478 0.00 0.00 0.00 2.74
459 460 3.380320 GGGCTGTTGTTTTGAGTTGTAGT 59.620 43.478 0.00 0.00 0.00 2.73
460 461 3.380004 TGGGCTGTTGTTTTGAGTTGTAG 59.620 43.478 0.00 0.00 0.00 2.74
461 462 3.357203 TGGGCTGTTGTTTTGAGTTGTA 58.643 40.909 0.00 0.00 0.00 2.41
462 463 2.175202 TGGGCTGTTGTTTTGAGTTGT 58.825 42.857 0.00 0.00 0.00 3.32
463 464 2.957491 TGGGCTGTTGTTTTGAGTTG 57.043 45.000 0.00 0.00 0.00 3.16
464 465 3.450457 TGATTGGGCTGTTGTTTTGAGTT 59.550 39.130 0.00 0.00 0.00 3.01
465 466 3.030291 TGATTGGGCTGTTGTTTTGAGT 58.970 40.909 0.00 0.00 0.00 3.41
466 467 3.731652 TGATTGGGCTGTTGTTTTGAG 57.268 42.857 0.00 0.00 0.00 3.02
467 468 3.803021 GCATGATTGGGCTGTTGTTTTGA 60.803 43.478 0.00 0.00 0.00 2.69
468 469 2.481185 GCATGATTGGGCTGTTGTTTTG 59.519 45.455 0.00 0.00 0.00 2.44
469 470 2.104451 TGCATGATTGGGCTGTTGTTTT 59.896 40.909 0.00 0.00 0.00 2.43
470 471 1.693062 TGCATGATTGGGCTGTTGTTT 59.307 42.857 0.00 0.00 0.00 2.83
471 472 1.001181 GTGCATGATTGGGCTGTTGTT 59.999 47.619 0.00 0.00 0.00 2.83
472 473 0.604578 GTGCATGATTGGGCTGTTGT 59.395 50.000 0.00 0.00 0.00 3.32
473 474 0.457166 CGTGCATGATTGGGCTGTTG 60.457 55.000 0.00 0.00 0.00 3.33
474 475 0.895100 ACGTGCATGATTGGGCTGTT 60.895 50.000 14.17 0.00 0.00 3.16
475 476 0.895100 AACGTGCATGATTGGGCTGT 60.895 50.000 14.17 0.00 0.00 4.40
476 477 0.457166 CAACGTGCATGATTGGGCTG 60.457 55.000 14.17 0.00 0.00 4.85
477 478 1.885157 CAACGTGCATGATTGGGCT 59.115 52.632 14.17 0.00 0.00 5.19
478 479 1.806758 GCAACGTGCATGATTGGGC 60.807 57.895 14.17 4.72 44.26 5.36
479 480 4.481870 GCAACGTGCATGATTGGG 57.518 55.556 14.17 0.00 44.26 4.12
497 498 2.854300 AATACCCTTGGGCGGCCTTG 62.854 60.000 29.87 20.17 0.00 3.61
498 499 2.622447 AATACCCTTGGGCGGCCTT 61.622 57.895 29.87 10.23 0.00 4.35
499 500 3.021263 AATACCCTTGGGCGGCCT 61.021 61.111 29.87 11.02 0.00 5.19
500 501 2.833121 CAATACCCTTGGGCGGCC 60.833 66.667 23.42 23.42 0.00 6.13
501 502 1.379309 TTCAATACCCTTGGGCGGC 60.379 57.895 5.46 0.00 0.00 6.53
502 503 1.035385 GGTTCAATACCCTTGGGCGG 61.035 60.000 5.46 0.00 41.43 6.13
503 504 2.489040 GGTTCAATACCCTTGGGCG 58.511 57.895 5.46 0.00 41.43 6.13
538 539 5.351458 GCAACCTTAATTGATTGGGTGATC 58.649 41.667 9.16 0.00 39.48 2.92
552 553 2.034999 CCGGGCTGGCAACCTTAA 59.965 61.111 6.92 0.00 0.00 1.85
566 576 0.374758 CAACGCATGATCTTGTCCGG 59.625 55.000 10.05 0.00 0.00 5.14
567 577 0.247814 GCAACGCATGATCTTGTCCG 60.248 55.000 10.05 8.35 0.00 4.79
572 582 0.527565 GGTTGGCAACGCATGATCTT 59.472 50.000 22.95 0.00 42.51 2.40
579 598 4.196778 TCCAGGGTTGGCAACGCA 62.197 61.111 37.86 21.90 45.79 5.24
583 602 2.840753 GGGTCTCCAGGGTTGGCAA 61.841 63.158 0.00 0.00 44.63 4.52
585 604 2.936032 AGGGTCTCCAGGGTTGGC 60.936 66.667 0.00 0.00 44.63 4.52
987 1021 0.539438 TGTTCATGGCCACCTTGGTC 60.539 55.000 8.16 0.38 43.98 4.02
1123 1157 2.183046 GACGCAGCAGGAGGACTC 59.817 66.667 0.00 0.00 0.00 3.36
1124 1158 2.601666 TGACGCAGCAGGAGGACT 60.602 61.111 0.00 0.00 0.00 3.85
2155 2215 8.576936 TCGTTTTAACTGTTGTTTTCTGTTTT 57.423 26.923 2.69 0.00 37.59 2.43
2156 2216 8.576936 TTCGTTTTAACTGTTGTTTTCTGTTT 57.423 26.923 2.69 0.00 37.59 2.83
2159 2219 9.670180 GAAATTCGTTTTAACTGTTGTTTTCTG 57.330 29.630 2.69 0.00 37.59 3.02
2160 2220 9.413048 TGAAATTCGTTTTAACTGTTGTTTTCT 57.587 25.926 2.69 0.00 37.59 2.52
2161 2221 9.670180 CTGAAATTCGTTTTAACTGTTGTTTTC 57.330 29.630 2.69 2.46 37.59 2.29
2162 2222 8.652463 CCTGAAATTCGTTTTAACTGTTGTTTT 58.348 29.630 2.69 0.00 37.59 2.43
2178 2243 4.430007 TGTCGTAGGATTCCTGAAATTCG 58.570 43.478 15.80 9.80 34.61 3.34
2179 2244 6.106673 TCTTGTCGTAGGATTCCTGAAATTC 58.893 40.000 15.80 2.21 34.61 2.17
2188 2253 5.661458 TCCAGAATTCTTGTCGTAGGATTC 58.339 41.667 4.86 7.46 39.48 2.52
2194 2259 4.158949 TCGGATTCCAGAATTCTTGTCGTA 59.841 41.667 4.86 0.00 0.00 3.43
2196 2261 3.521560 TCGGATTCCAGAATTCTTGTCG 58.478 45.455 4.86 6.62 0.00 4.35
2214 2279 1.388093 CGCGATAGATTTGCATCTCGG 59.612 52.381 0.00 0.00 40.53 4.63
2266 2357 1.658596 TCGCTCGTTGCATGTGTAATC 59.341 47.619 0.00 0.00 43.06 1.75
2285 2376 3.650139 TCTTTCAGTACTTTCCGTGCTC 58.350 45.455 0.00 0.00 36.35 4.26
2286 2377 3.746045 TCTTTCAGTACTTTCCGTGCT 57.254 42.857 0.00 0.00 39.30 4.40
2287 2378 4.806342 TTTCTTTCAGTACTTTCCGTGC 57.194 40.909 0.00 0.00 0.00 5.34
2288 2379 6.548171 TGTTTTTCTTTCAGTACTTTCCGTG 58.452 36.000 0.00 0.00 0.00 4.94
2296 2387 7.701078 GGAGGAAAACTGTTTTTCTTTCAGTAC 59.299 37.037 23.78 11.69 46.80 2.73
2302 2393 5.650703 TCTCGGAGGAAAACTGTTTTTCTTT 59.349 36.000 23.78 6.96 46.80 2.52
2315 2406 4.527038 AGTCTTGTTACATCTCGGAGGAAA 59.473 41.667 4.96 0.00 0.00 3.13
2316 2407 4.082190 CAGTCTTGTTACATCTCGGAGGAA 60.082 45.833 4.96 0.00 0.00 3.36
2346 2440 5.051641 CGTCGCACTGGTAGAAGAAATAATC 60.052 44.000 0.00 0.00 0.00 1.75
2347 2441 4.804139 CGTCGCACTGGTAGAAGAAATAAT 59.196 41.667 0.00 0.00 0.00 1.28
2348 2442 4.082625 TCGTCGCACTGGTAGAAGAAATAA 60.083 41.667 0.00 0.00 0.00 1.40
2349 2443 3.441222 TCGTCGCACTGGTAGAAGAAATA 59.559 43.478 0.00 0.00 0.00 1.40
2350 2444 2.230508 TCGTCGCACTGGTAGAAGAAAT 59.769 45.455 0.00 0.00 0.00 2.17
2351 2445 1.610038 TCGTCGCACTGGTAGAAGAAA 59.390 47.619 0.00 0.00 0.00 2.52
2352 2446 1.199327 CTCGTCGCACTGGTAGAAGAA 59.801 52.381 0.00 0.00 0.00 2.52
2353 2447 0.803117 CTCGTCGCACTGGTAGAAGA 59.197 55.000 0.00 0.00 0.00 2.87
2354 2448 0.798771 GCTCGTCGCACTGGTAGAAG 60.799 60.000 0.00 0.00 38.92 2.85
2355 2449 1.211969 GCTCGTCGCACTGGTAGAA 59.788 57.895 0.00 0.00 38.92 2.10
2356 2450 2.697761 GGCTCGTCGCACTGGTAGA 61.698 63.158 2.27 0.00 41.67 2.59
2357 2451 2.202623 GGCTCGTCGCACTGGTAG 60.203 66.667 2.27 0.00 41.67 3.18
2358 2452 2.566570 TTGGCTCGTCGCACTGGTA 61.567 57.895 2.27 0.00 41.67 3.25
2359 2453 3.923864 TTGGCTCGTCGCACTGGT 61.924 61.111 2.27 0.00 41.67 4.00
2360 2454 3.414700 GTTGGCTCGTCGCACTGG 61.415 66.667 2.27 0.00 41.67 4.00
2361 2455 3.767230 CGTTGGCTCGTCGCACTG 61.767 66.667 2.27 0.00 41.67 3.66
2362 2456 3.973516 TCGTTGGCTCGTCGCACT 61.974 61.111 2.27 0.00 41.67 4.40
2363 2457 3.764049 GTCGTTGGCTCGTCGCAC 61.764 66.667 2.27 0.00 41.67 5.34
2370 2464 4.980805 TGGTGCGGTCGTTGGCTC 62.981 66.667 0.00 0.00 0.00 4.70
2371 2465 4.988598 CTGGTGCGGTCGTTGGCT 62.989 66.667 0.00 0.00 0.00 4.75
2373 2467 4.988598 AGCTGGTGCGGTCGTTGG 62.989 66.667 0.00 0.00 45.42 3.77
2374 2468 3.414700 GAGCTGGTGCGGTCGTTG 61.415 66.667 0.00 0.00 45.42 4.10
2375 2469 3.865929 CTGAGCTGGTGCGGTCGTT 62.866 63.158 0.00 0.00 45.42 3.85
2376 2470 4.363990 CTGAGCTGGTGCGGTCGT 62.364 66.667 0.00 0.00 45.42 4.34
2378 2472 4.767255 CCCTGAGCTGGTGCGGTC 62.767 72.222 0.00 0.00 45.42 4.79
2381 2475 3.551496 TTTCCCCTGAGCTGGTGCG 62.551 63.158 0.00 0.00 45.42 5.34
2382 2476 1.228552 TTTTCCCCTGAGCTGGTGC 60.229 57.895 0.00 0.00 40.05 5.01
2383 2477 0.178992 TGTTTTCCCCTGAGCTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
2384 2478 0.555769 TTGTTTTCCCCTGAGCTGGT 59.444 50.000 0.00 0.00 0.00 4.00
2385 2479 1.928868 ATTGTTTTCCCCTGAGCTGG 58.071 50.000 0.00 0.00 0.00 4.85
2386 2480 2.892852 TGAATTGTTTTCCCCTGAGCTG 59.107 45.455 0.00 0.00 0.00 4.24
2387 2481 3.160269 CTGAATTGTTTTCCCCTGAGCT 58.840 45.455 0.00 0.00 0.00 4.09
2388 2482 2.353109 GCTGAATTGTTTTCCCCTGAGC 60.353 50.000 0.00 0.00 0.00 4.26
2389 2483 2.095059 CGCTGAATTGTTTTCCCCTGAG 60.095 50.000 0.00 0.00 0.00 3.35
2390 2484 1.885887 CGCTGAATTGTTTTCCCCTGA 59.114 47.619 0.00 0.00 0.00 3.86
2391 2485 1.885887 TCGCTGAATTGTTTTCCCCTG 59.114 47.619 0.00 0.00 0.00 4.45
2392 2486 1.886542 GTCGCTGAATTGTTTTCCCCT 59.113 47.619 0.00 0.00 0.00 4.79
2393 2487 1.067846 GGTCGCTGAATTGTTTTCCCC 60.068 52.381 0.00 0.00 0.00 4.81
2394 2488 1.611491 TGGTCGCTGAATTGTTTTCCC 59.389 47.619 0.00 0.00 0.00 3.97
2395 2489 2.293399 AGTGGTCGCTGAATTGTTTTCC 59.707 45.455 0.00 0.00 0.00 3.13
2396 2490 3.003275 TCAGTGGTCGCTGAATTGTTTTC 59.997 43.478 11.29 0.00 41.93 2.29
2397 2491 2.948979 TCAGTGGTCGCTGAATTGTTTT 59.051 40.909 11.29 0.00 41.93 2.43
2398 2492 2.549754 CTCAGTGGTCGCTGAATTGTTT 59.450 45.455 14.11 0.00 43.92 2.83
2399 2493 2.146342 CTCAGTGGTCGCTGAATTGTT 58.854 47.619 14.11 0.00 43.92 2.83
2400 2494 1.344438 TCTCAGTGGTCGCTGAATTGT 59.656 47.619 14.11 0.00 43.92 2.71
2401 2495 1.998315 CTCTCAGTGGTCGCTGAATTG 59.002 52.381 14.11 4.75 43.92 2.32
2402 2496 1.895798 TCTCTCAGTGGTCGCTGAATT 59.104 47.619 14.11 0.00 43.92 2.17
2403 2497 1.550327 TCTCTCAGTGGTCGCTGAAT 58.450 50.000 14.11 0.00 43.92 2.57
2404 2498 1.474478 GATCTCTCAGTGGTCGCTGAA 59.526 52.381 14.11 2.04 43.92 3.02
2405 2499 1.098869 GATCTCTCAGTGGTCGCTGA 58.901 55.000 12.81 12.81 42.56 4.26
2406 2500 0.813821 TGATCTCTCAGTGGTCGCTG 59.186 55.000 5.26 5.26 37.81 5.18
2407 2501 1.102154 CTGATCTCTCAGTGGTCGCT 58.898 55.000 0.00 0.00 43.35 4.93
2408 2502 3.639162 CTGATCTCTCAGTGGTCGC 57.361 57.895 0.00 0.00 43.35 5.19
2416 2510 2.800516 GGCGGTCTCTGATCTCTCA 58.199 57.895 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.