Multiple sequence alignment - TraesCS7D01G350300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G350300 chr7D 100.000 4683 0 0 1 4683 451052619 451047937 0.000000e+00 8648
1 TraesCS7D01G350300 chr7D 90.743 875 68 10 2476 3345 34138851 34139717 0.000000e+00 1155
2 TraesCS7D01G350300 chr7D 92.765 774 51 5 1 770 451082098 451081326 0.000000e+00 1114
3 TraesCS7D01G350300 chr7D 89.589 778 70 11 1 770 369217539 369216765 0.000000e+00 977
4 TraesCS7D01G350300 chr7B 91.695 2613 137 43 768 3345 468854670 468852103 0.000000e+00 3550
5 TraesCS7D01G350300 chr7B 87.467 750 46 28 3383 4113 468852109 468851389 0.000000e+00 821
6 TraesCS7D01G350300 chr7B 92.920 226 9 3 4367 4588 468851151 468850929 5.850000e-84 322
7 TraesCS7D01G350300 chr7A 92.908 2256 91 37 1840 4070 545949116 545951327 0.000000e+00 3216
8 TraesCS7D01G350300 chr7A 96.121 464 16 2 782 1243 545947675 545948138 0.000000e+00 756
9 TraesCS7D01G350300 chr7A 86.346 520 50 8 1342 1846 545948209 545948722 8.860000e-152 547
10 TraesCS7D01G350300 chr1D 90.495 768 63 10 1 763 12433393 12434155 0.000000e+00 1005
11 TraesCS7D01G350300 chr1D 90.052 774 68 9 3 770 197339455 197340225 0.000000e+00 994
12 TraesCS7D01G350300 chr3D 89.831 767 69 9 1 762 238550996 238551758 0.000000e+00 976
13 TraesCS7D01G350300 chr3D 98.990 99 0 1 4586 4683 125805261 125805163 4.820000e-40 176
14 TraesCS7D01G350300 chr2D 89.817 766 70 8 1 762 54026587 54027348 0.000000e+00 976
15 TraesCS7D01G350300 chr6D 89.556 766 70 10 1 762 106410421 106411180 0.000000e+00 963
16 TraesCS7D01G350300 chr6D 89.018 774 77 8 1 769 196462683 196463453 0.000000e+00 952
17 TraesCS7D01G350300 chr6D 84.793 217 16 10 1001 1216 148765140 148765340 7.950000e-48 202
18 TraesCS7D01G350300 chr2B 89.060 777 74 11 1 770 197894167 197893395 0.000000e+00 953
19 TraesCS7D01G350300 chr6B 84.793 217 16 10 1001 1216 261527560 261527760 7.950000e-48 202
20 TraesCS7D01G350300 chr6A 84.793 217 16 10 1001 1216 198367712 198367512 7.950000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G350300 chr7D 451047937 451052619 4682 True 8648.000000 8648 100.000000 1 4683 1 chr7D.!!$R2 4682
1 TraesCS7D01G350300 chr7D 34138851 34139717 866 False 1155.000000 1155 90.743000 2476 3345 1 chr7D.!!$F1 869
2 TraesCS7D01G350300 chr7D 451081326 451082098 772 True 1114.000000 1114 92.765000 1 770 1 chr7D.!!$R3 769
3 TraesCS7D01G350300 chr7D 369216765 369217539 774 True 977.000000 977 89.589000 1 770 1 chr7D.!!$R1 769
4 TraesCS7D01G350300 chr7B 468850929 468854670 3741 True 1564.333333 3550 90.694000 768 4588 3 chr7B.!!$R1 3820
5 TraesCS7D01G350300 chr7A 545947675 545951327 3652 False 1506.333333 3216 91.791667 782 4070 3 chr7A.!!$F1 3288
6 TraesCS7D01G350300 chr1D 12433393 12434155 762 False 1005.000000 1005 90.495000 1 763 1 chr1D.!!$F1 762
7 TraesCS7D01G350300 chr1D 197339455 197340225 770 False 994.000000 994 90.052000 3 770 1 chr1D.!!$F2 767
8 TraesCS7D01G350300 chr3D 238550996 238551758 762 False 976.000000 976 89.831000 1 762 1 chr3D.!!$F1 761
9 TraesCS7D01G350300 chr2D 54026587 54027348 761 False 976.000000 976 89.817000 1 762 1 chr2D.!!$F1 761
10 TraesCS7D01G350300 chr6D 106410421 106411180 759 False 963.000000 963 89.556000 1 762 1 chr6D.!!$F1 761
11 TraesCS7D01G350300 chr6D 196462683 196463453 770 False 952.000000 952 89.018000 1 769 1 chr6D.!!$F3 768
12 TraesCS7D01G350300 chr2B 197893395 197894167 772 True 953.000000 953 89.060000 1 770 1 chr2B.!!$R1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 737 0.106217 AAAGGGGATAACATGCGGGG 60.106 55.0 0.0 0.0 0.00 5.73 F
827 853 0.627451 TCCCCTTCTCGCACCTACTA 59.373 55.0 0.0 0.0 0.00 1.82 F
2037 2506 0.257039 ACCTTATCCTGCCCAGCAAG 59.743 55.0 0.0 0.0 38.41 4.01 F
2758 3232 0.249657 CTGCTAGAATGGAGTCGGGC 60.250 60.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1784 0.035056 ATGAGCCCGGTTCTTGAAGG 60.035 55.0 0.00 0.00 0.00 3.46 R
2367 2839 0.979187 TACCTGGAGGCCCGTAAAGG 60.979 60.0 0.00 2.17 39.32 3.11 R
3238 3719 0.028505 GATGTGCTTGCCTACATGCG 59.971 55.0 3.78 0.00 47.00 4.73 R
4637 5185 0.106769 TGGCCACACTTGCTTCTGAA 60.107 50.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.252971 TCAAGGTGAACGTAAGAGGAAG 57.747 45.455 0.00 0.00 43.62 3.46
96 97 1.098050 CACTTAGAGGGGTTGCATGC 58.902 55.000 11.82 11.82 0.00 4.06
99 100 0.407528 TTAGAGGGGTTGCATGCCAA 59.592 50.000 16.68 6.85 0.00 4.52
150 154 1.062685 CTCGATGACCACGACCGAG 59.937 63.158 0.00 0.00 40.28 4.63
197 201 4.590647 CAGGAGTGATGTATGAGGTACCAT 59.409 45.833 15.94 1.90 32.03 3.55
241 246 1.599542 GCAGAGTCGAGCAACAAAAGT 59.400 47.619 5.84 0.00 0.00 2.66
292 297 4.146640 CGTCGATCACGTTGCTCA 57.853 55.556 8.84 0.00 44.07 4.26
296 301 1.792949 GTCGATCACGTTGCTCAAGTT 59.207 47.619 0.00 0.00 40.69 2.66
403 410 3.009033 AGCAGGTAAGGTACAATGAGCAA 59.991 43.478 0.00 0.00 0.00 3.91
416 423 5.659463 ACAATGAGCAAGTTACAAAAGCAA 58.341 33.333 0.00 0.00 0.00 3.91
449 456 9.791820 CATCAGAATATGAGCAAACAATAACAA 57.208 29.630 0.00 0.00 42.53 2.83
557 566 0.793853 GAAGAAGAGGTCGTCGTCGC 60.794 60.000 0.00 0.00 38.60 5.19
572 581 1.746239 TCGCCGTAGTCGATCACCA 60.746 57.895 0.00 0.00 27.85 4.17
630 640 4.642466 AGAGGGGGAAGAAACAGTAAAG 57.358 45.455 0.00 0.00 0.00 1.85
635 647 7.018249 AGAGGGGGAAGAAACAGTAAAGATAAA 59.982 37.037 0.00 0.00 0.00 1.40
704 716 2.846550 CGCAATGCTATACGATACCGAG 59.153 50.000 2.94 0.00 39.50 4.63
719 732 3.560636 ACCGAGAAAGGGGATAACATG 57.439 47.619 0.00 0.00 35.02 3.21
724 737 0.106217 AAAGGGGATAACATGCGGGG 60.106 55.000 0.00 0.00 0.00 5.73
732 745 3.194755 GGATAACATGCGGGGAAGTTTTT 59.805 43.478 0.00 0.00 0.00 1.94
774 788 2.143925 CAGACGAAAGAAGGGGTCAAC 58.856 52.381 0.00 0.00 31.93 3.18
802 817 4.451150 TCCGATCTGTGTGGCCGC 62.451 66.667 10.11 10.11 0.00 6.53
827 853 0.627451 TCCCCTTCTCGCACCTACTA 59.373 55.000 0.00 0.00 0.00 1.82
834 860 1.065926 TCTCGCACCTACTACTCCGAA 60.066 52.381 0.00 0.00 0.00 4.30
835 861 1.063764 CTCGCACCTACTACTCCGAAC 59.936 57.143 0.00 0.00 0.00 3.95
1209 1237 3.000080 GCGCAACGACCTCAACTCG 62.000 63.158 0.30 0.00 37.17 4.18
1243 1271 2.140792 CCCGATCCCCAATCTCCGT 61.141 63.158 0.00 0.00 31.68 4.69
1245 1273 1.367840 CGATCCCCAATCTCCGTCC 59.632 63.158 0.00 0.00 31.68 4.79
1252 1280 0.673644 CCAATCTCCGTCCGCTGTTT 60.674 55.000 0.00 0.00 0.00 2.83
1253 1281 0.721718 CAATCTCCGTCCGCTGTTTC 59.278 55.000 0.00 0.00 0.00 2.78
1272 1300 2.955751 CTAGTCCGCGCAACCCTAGC 62.956 65.000 8.75 0.00 0.00 3.42
1277 1305 3.787001 GCGCAACCCTAGCTCCCT 61.787 66.667 0.30 0.00 0.00 4.20
1279 1307 2.911928 GCAACCCTAGCTCCCTCC 59.088 66.667 0.00 0.00 0.00 4.30
1281 1309 1.348775 GCAACCCTAGCTCCCTCCAT 61.349 60.000 0.00 0.00 0.00 3.41
1296 1331 2.076100 CTCCATGCGTGTGTGTGTTAT 58.924 47.619 4.96 0.00 0.00 1.89
1321 1356 2.513026 AAAGACGATCCGCTGCTGCT 62.513 55.000 14.03 0.00 36.97 4.24
1325 1360 1.886313 CGATCCGCTGCTGCTTCAT 60.886 57.895 14.03 2.50 36.97 2.57
1328 1363 2.149578 GATCCGCTGCTGCTTCATATT 58.850 47.619 14.03 0.00 36.97 1.28
1387 1433 2.494073 CCTCTAGTTCCGAGCTTCAACT 59.506 50.000 9.91 9.91 34.68 3.16
1402 1448 4.991056 GCTTCAACTATGCTTGATCCGATA 59.009 41.667 0.00 0.00 30.19 2.92
1443 1489 5.360144 TCCGATTTTAGGTTTGTTTTGGTGA 59.640 36.000 0.00 0.00 0.00 4.02
1447 1506 7.306515 CGATTTTAGGTTTGTTTTGGTGATGTG 60.307 37.037 0.00 0.00 0.00 3.21
1468 1527 1.226745 CGCGTCCCACTTATGCGTA 60.227 57.895 0.00 0.00 45.05 4.42
1473 1532 2.933906 CGTCCCACTTATGCGTAATGTT 59.066 45.455 0.00 0.00 0.00 2.71
1485 1544 2.413796 GCGTAATGTTCGTGATTGGTGA 59.586 45.455 0.00 0.00 0.00 4.02
1491 1550 7.201232 CGTAATGTTCGTGATTGGTGAAAATTC 60.201 37.037 0.00 0.00 33.02 2.17
1492 1551 5.506686 TGTTCGTGATTGGTGAAAATTCA 57.493 34.783 0.00 0.00 34.20 2.57
1520 1590 7.900782 TTTTTAGTGTGCATAGTCCTAACTC 57.099 36.000 0.00 0.00 36.92 3.01
1521 1591 6.852420 TTTAGTGTGCATAGTCCTAACTCT 57.148 37.500 0.00 0.00 36.92 3.24
1522 1592 4.727507 AGTGTGCATAGTCCTAACTCTG 57.272 45.455 0.00 0.00 36.92 3.35
1527 1597 4.599047 GCATAGTCCTAACTCTGCTCAT 57.401 45.455 8.24 0.00 46.59 2.90
1532 1602 7.094162 GCATAGTCCTAACTCTGCTCATATGTA 60.094 40.741 1.90 0.00 46.59 2.29
1536 1606 8.709308 AGTCCTAACTCTGCTCATATGTATTTT 58.291 33.333 1.90 0.00 0.00 1.82
1583 1653 8.614469 TTTGGGGTATTGAATTTTGTTCAATC 57.386 30.769 16.59 10.16 43.40 2.67
1601 1671 7.144000 GTTCAATCAGAATATGGAATGCTTCC 58.856 38.462 7.71 7.71 43.53 3.46
1612 1682 3.209410 GGAATGCTTCCGAGACATTGAT 58.791 45.455 3.42 0.00 40.59 2.57
1654 1724 7.917597 TGTGTAATCTCTCTTATACTGACGAC 58.082 38.462 0.00 0.00 0.00 4.34
1666 1736 7.701078 TCTTATACTGACGACTTAAATGCTCAC 59.299 37.037 0.00 0.00 0.00 3.51
1714 1784 1.743252 CCGGGAAGAGTTGCAGCTC 60.743 63.158 21.76 21.76 35.82 4.09
2037 2506 0.257039 ACCTTATCCTGCCCAGCAAG 59.743 55.000 0.00 0.00 38.41 4.01
2158 2627 7.117812 AGGAGGTTCGTAAATATATTCAATGCG 59.882 37.037 0.00 0.00 0.00 4.73
2159 2628 6.599437 AGGTTCGTAAATATATTCAATGCGC 58.401 36.000 0.00 0.00 0.00 6.09
2227 2699 2.309755 TCAGGTGATTGAGCTTCCCATT 59.690 45.455 0.00 0.00 0.00 3.16
2333 2805 3.691118 TGATTCAGCCAGTTATTCAGTGC 59.309 43.478 0.00 0.00 0.00 4.40
2364 2836 2.031120 TCCTTGCTTTTTCAGGGTGTG 58.969 47.619 0.00 0.00 35.05 3.82
2367 2839 1.032014 TGCTTTTTCAGGGTGTGCTC 58.968 50.000 0.00 0.00 0.00 4.26
2469 2941 3.924114 TCAGGTTCTGAGTTGGTTCAA 57.076 42.857 0.00 0.00 35.39 2.69
2487 2959 5.828328 GGTTCAAAAGTATATTGGAGAGGGG 59.172 44.000 0.00 0.00 0.00 4.79
2491 2963 4.295905 AAGTATATTGGAGAGGGGTCCA 57.704 45.455 0.00 0.00 45.37 4.02
2551 3023 2.479566 ATCCGTCTGTGTTGCATTCT 57.520 45.000 0.00 0.00 0.00 2.40
2592 3064 6.294731 CCTGTCAGATTTCTTTTTCGGGAAAT 60.295 38.462 0.00 0.00 42.53 2.17
2630 3104 9.990360 TTTTGAAATTATTCCCTGTAAAAGGTC 57.010 29.630 0.00 0.00 45.78 3.85
2631 3105 8.950007 TTGAAATTATTCCCTGTAAAAGGTCT 57.050 30.769 0.00 0.00 45.78 3.85
2686 3160 6.363357 GCTAACACATTTGGTCTGAATTTGAC 59.637 38.462 4.55 4.55 0.00 3.18
2758 3232 0.249657 CTGCTAGAATGGAGTCGGGC 60.250 60.000 0.00 0.00 0.00 6.13
2860 3334 7.962441 ACAAAATTAAGGTTCTTATGGCAACT 58.038 30.769 0.00 0.00 37.61 3.16
2969 3443 5.620738 AAGTGATGCAGTACTCACCATAT 57.379 39.130 13.27 0.00 42.18 1.78
2970 3444 6.731292 AAGTGATGCAGTACTCACCATATA 57.269 37.500 13.27 0.00 42.18 0.86
2971 3445 6.090483 AGTGATGCAGTACTCACCATATAC 57.910 41.667 13.27 7.48 42.18 1.47
2972 3446 5.835819 AGTGATGCAGTACTCACCATATACT 59.164 40.000 13.27 9.05 42.18 2.12
3159 3633 6.992715 AGCTAAAGGTATGTATTGTGTCCATC 59.007 38.462 0.00 0.00 0.00 3.51
3238 3719 8.721478 TCTGAACTTCACAATGCTAATAAGTTC 58.279 33.333 15.35 15.35 46.56 3.01
3249 3730 3.807622 GCTAATAAGTTCGCATGTAGGCA 59.192 43.478 0.00 0.00 0.00 4.75
3257 3738 0.028505 CGCATGTAGGCAAGCACATC 59.971 55.000 0.00 0.00 39.07 3.06
3374 3860 6.601613 TCCATGTAAAGTTTTACCCATGCTAG 59.398 38.462 11.16 0.00 41.72 3.42
3379 3865 9.169592 TGTAAAGTTTTACCCATGCTAGAATAC 57.830 33.333 11.16 0.00 41.72 1.89
3501 3993 5.588246 TCTGTTTCAAGTAGTGTGCATCAAA 59.412 36.000 0.00 0.00 0.00 2.69
3772 4265 0.392193 CAGATGAGCTGCGGGTTTCT 60.392 55.000 0.00 1.85 37.90 2.52
3797 4290 1.134226 CCGTGTCGACAACTGTAACC 58.866 55.000 21.95 4.01 0.00 2.85
3809 4312 0.607489 CTGTAACCTGCAGCTGCCTT 60.607 55.000 34.64 23.73 41.18 4.35
3850 4353 9.938280 TCTTTATTGGGTTATATTATGAGACGG 57.062 33.333 0.00 0.00 0.00 4.79
3883 4386 3.120477 CCGTTCGCTTGCTTGTAATGTAA 60.120 43.478 0.00 0.00 0.00 2.41
3893 4396 7.328249 GCTTGCTTGTAATGTAATGTTGCTTTA 59.672 33.333 0.00 0.00 0.00 1.85
3894 4397 8.514136 TTGCTTGTAATGTAATGTTGCTTTAC 57.486 30.769 10.52 10.52 35.49 2.01
3901 4404 6.657836 ATGTAATGTTGCTTTACCGACTAC 57.342 37.500 0.00 0.00 0.00 2.73
3902 4405 4.622313 TGTAATGTTGCTTTACCGACTACG 59.378 41.667 0.00 0.00 39.43 3.51
3904 4407 3.913548 TGTTGCTTTACCGACTACGTA 57.086 42.857 0.00 0.00 37.88 3.57
3906 4409 3.501828 TGTTGCTTTACCGACTACGTAGA 59.498 43.478 28.74 2.99 37.88 2.59
3908 4411 4.970662 TGCTTTACCGACTACGTAGATT 57.029 40.909 28.74 7.56 37.88 2.40
3909 4412 4.665212 TGCTTTACCGACTACGTAGATTG 58.335 43.478 28.74 16.83 37.88 2.67
3910 4413 4.040376 GCTTTACCGACTACGTAGATTGG 58.960 47.826 28.74 24.76 37.88 3.16
3931 4434 2.099431 GCCTCGCTGTGCTGAGAAG 61.099 63.158 10.98 0.00 33.54 2.85
3989 4492 6.495181 TGTGGCAAATGTTATTTCTAGGGAAA 59.505 34.615 0.00 0.00 44.26 3.13
3991 4494 6.723977 TGGCAAATGTTATTTCTAGGGAAACT 59.276 34.615 0.00 0.00 43.16 2.66
3992 4495 7.093945 TGGCAAATGTTATTTCTAGGGAAACTC 60.094 37.037 0.00 0.00 43.16 3.01
4000 4503 9.157104 GTTATTTCTAGGGAAACTCTTCTTCAG 57.843 37.037 0.00 0.00 43.16 3.02
4001 4504 6.749036 TTTCTAGGGAAACTCTTCTTCAGT 57.251 37.500 0.00 0.00 36.63 3.41
4002 4505 5.986501 TCTAGGGAAACTCTTCTTCAGTC 57.013 43.478 0.00 0.00 0.00 3.51
4003 4506 4.773149 TCTAGGGAAACTCTTCTTCAGTCC 59.227 45.833 0.00 0.00 0.00 3.85
4004 4507 3.592865 AGGGAAACTCTTCTTCAGTCCT 58.407 45.455 0.00 0.00 0.00 3.85
4005 4508 3.977326 AGGGAAACTCTTCTTCAGTCCTT 59.023 43.478 0.00 0.00 0.00 3.36
4006 4509 5.155905 AGGGAAACTCTTCTTCAGTCCTTA 58.844 41.667 0.00 0.00 0.00 2.69
4007 4510 5.247337 AGGGAAACTCTTCTTCAGTCCTTAG 59.753 44.000 0.00 0.00 0.00 2.18
4008 4511 4.932799 GGAAACTCTTCTTCAGTCCTTAGC 59.067 45.833 0.00 0.00 0.00 3.09
4009 4512 5.279758 GGAAACTCTTCTTCAGTCCTTAGCT 60.280 44.000 0.00 0.00 0.00 3.32
4010 4513 6.071278 GGAAACTCTTCTTCAGTCCTTAGCTA 60.071 42.308 0.00 0.00 0.00 3.32
4011 4514 7.364320 GGAAACTCTTCTTCAGTCCTTAGCTAT 60.364 40.741 0.00 0.00 0.00 2.97
4032 4535 4.829064 TTTGTTCTCTTTTGTCCATCCG 57.171 40.909 0.00 0.00 0.00 4.18
4095 4604 9.625747 TGCAATAATAATGAGTTATGGAACTGA 57.374 29.630 0.00 0.00 46.23 3.41
4108 4617 0.681733 GAACTGACAGCTCCTCACCA 59.318 55.000 1.25 0.00 0.00 4.17
4113 4622 3.699894 CAGCTCCTCACCACGGCT 61.700 66.667 0.00 0.00 0.00 5.52
4114 4623 3.699894 AGCTCCTCACCACGGCTG 61.700 66.667 0.00 0.00 31.68 4.85
4115 4624 4.767255 GCTCCTCACCACGGCTGG 62.767 72.222 0.00 0.00 44.26 4.85
4116 4625 2.997315 CTCCTCACCACGGCTGGA 60.997 66.667 9.53 0.00 40.55 3.86
4117 4626 3.302347 CTCCTCACCACGGCTGGAC 62.302 68.421 9.53 0.00 40.55 4.02
4118 4627 4.394712 CCTCACCACGGCTGGACC 62.395 72.222 9.53 0.00 40.55 4.46
4119 4628 3.625897 CTCACCACGGCTGGACCA 61.626 66.667 9.53 0.00 40.55 4.02
4120 4629 2.927856 TCACCACGGCTGGACCAT 60.928 61.111 9.53 0.00 40.55 3.55
4121 4630 1.610967 TCACCACGGCTGGACCATA 60.611 57.895 9.53 0.00 40.55 2.74
4122 4631 1.195442 TCACCACGGCTGGACCATAA 61.195 55.000 9.53 0.00 40.55 1.90
4123 4632 0.744414 CACCACGGCTGGACCATAAG 60.744 60.000 9.53 0.00 40.55 1.73
4124 4633 1.153168 CCACGGCTGGACCATAAGG 60.153 63.158 0.00 0.00 40.55 2.69
4125 4634 1.153168 CACGGCTGGACCATAAGGG 60.153 63.158 0.00 0.00 44.81 3.95
4126 4635 2.375345 ACGGCTGGACCATAAGGGG 61.375 63.158 0.00 0.00 42.91 4.79
4127 4636 2.070039 CGGCTGGACCATAAGGGGA 61.070 63.158 0.00 0.00 42.91 4.81
4128 4637 1.839894 GGCTGGACCATAAGGGGAG 59.160 63.158 0.00 0.00 42.91 4.30
4129 4638 1.149401 GCTGGACCATAAGGGGAGC 59.851 63.158 0.00 0.00 42.91 4.70
4130 4639 1.635817 GCTGGACCATAAGGGGAGCA 61.636 60.000 0.00 0.00 42.91 4.26
4131 4640 0.471617 CTGGACCATAAGGGGAGCAG 59.528 60.000 0.00 0.00 42.91 4.24
4132 4641 1.149401 GGACCATAAGGGGAGCAGC 59.851 63.158 0.00 0.00 42.91 5.25
4133 4642 1.348775 GGACCATAAGGGGAGCAGCT 61.349 60.000 0.00 0.00 42.91 4.24
4134 4643 0.107643 GACCATAAGGGGAGCAGCTC 59.892 60.000 14.69 14.69 42.91 4.09
4135 4644 0.327000 ACCATAAGGGGAGCAGCTCT 60.327 55.000 21.99 4.73 42.91 4.09
4136 4645 0.842635 CCATAAGGGGAGCAGCTCTT 59.157 55.000 21.99 11.12 0.00 2.85
4137 4646 1.476471 CCATAAGGGGAGCAGCTCTTG 60.476 57.143 21.99 9.86 0.00 3.02
4138 4647 1.487976 CATAAGGGGAGCAGCTCTTGA 59.512 52.381 21.99 4.16 0.00 3.02
4139 4648 1.885049 TAAGGGGAGCAGCTCTTGAT 58.115 50.000 21.99 9.09 0.00 2.57
4140 4649 0.255318 AAGGGGAGCAGCTCTTGATG 59.745 55.000 21.99 0.00 0.00 3.07
4149 4658 3.874400 CAGCTCTTGATGCCTTTATCG 57.126 47.619 0.00 0.00 0.00 2.92
4152 4661 4.447054 CAGCTCTTGATGCCTTTATCGTAG 59.553 45.833 0.00 0.00 0.00 3.51
4154 4663 4.210120 GCTCTTGATGCCTTTATCGTAGTG 59.790 45.833 0.00 0.00 0.00 2.74
4160 4669 6.112734 TGATGCCTTTATCGTAGTGTCAATT 58.887 36.000 0.00 0.00 0.00 2.32
4163 4672 5.350365 TGCCTTTATCGTAGTGTCAATTGTC 59.650 40.000 5.13 0.00 0.00 3.18
4167 4676 8.286800 CCTTTATCGTAGTGTCAATTGTCAAAA 58.713 33.333 6.96 2.48 0.00 2.44
4202 4711 3.621268 GCACGGTGAATTACATGCTCTTA 59.379 43.478 13.29 0.00 38.93 2.10
4208 4717 6.923508 CGGTGAATTACATGCTCTTAGTGATA 59.076 38.462 0.00 0.00 0.00 2.15
4217 4726 4.245660 TGCTCTTAGTGATACAAGTGCAC 58.754 43.478 9.40 9.40 42.87 4.57
4223 4732 2.139917 GTGATACAAGTGCACGGTGAA 58.860 47.619 24.73 0.00 0.00 3.18
4225 4734 3.188460 GTGATACAAGTGCACGGTGAATT 59.812 43.478 24.73 5.83 0.00 2.17
4226 4735 4.390603 GTGATACAAGTGCACGGTGAATTA 59.609 41.667 24.73 11.14 0.00 1.40
4227 4736 4.390603 TGATACAAGTGCACGGTGAATTAC 59.609 41.667 24.73 13.47 0.00 1.89
4228 4737 2.566913 ACAAGTGCACGGTGAATTACA 58.433 42.857 24.73 0.00 0.00 2.41
4229 4738 3.146066 ACAAGTGCACGGTGAATTACAT 58.854 40.909 24.73 3.41 0.00 2.29
4230 4739 3.058293 ACAAGTGCACGGTGAATTACATG 60.058 43.478 24.73 9.90 0.00 3.21
4231 4740 1.468520 AGTGCACGGTGAATTACATGC 59.531 47.619 13.29 0.00 41.08 4.06
4232 4741 1.468520 GTGCACGGTGAATTACATGCT 59.531 47.619 13.29 0.00 41.20 3.79
4233 4742 1.737236 TGCACGGTGAATTACATGCTC 59.263 47.619 13.29 0.00 41.20 4.26
4234 4743 2.009774 GCACGGTGAATTACATGCTCT 58.990 47.619 13.29 0.00 38.93 4.09
4235 4744 2.420022 GCACGGTGAATTACATGCTCTT 59.580 45.455 13.29 0.00 38.93 2.85
4236 4745 3.621268 GCACGGTGAATTACATGCTCTTA 59.379 43.478 13.29 0.00 38.93 2.10
4237 4746 4.260375 GCACGGTGAATTACATGCTCTTAG 60.260 45.833 13.29 0.00 38.93 2.18
4238 4747 5.109210 CACGGTGAATTACATGCTCTTAGA 58.891 41.667 0.74 0.00 0.00 2.10
4239 4748 5.580691 CACGGTGAATTACATGCTCTTAGAA 59.419 40.000 0.74 0.00 0.00 2.10
4240 4749 6.258727 CACGGTGAATTACATGCTCTTAGAAT 59.741 38.462 0.74 0.00 0.00 2.40
4241 4750 6.823689 ACGGTGAATTACATGCTCTTAGAATT 59.176 34.615 0.00 0.00 0.00 2.17
4242 4751 7.985184 ACGGTGAATTACATGCTCTTAGAATTA 59.015 33.333 0.00 0.00 0.00 1.40
4249 4758 5.186198 ACATGCTCTTAGAATTACACCACC 58.814 41.667 0.00 0.00 0.00 4.61
4251 4760 3.195661 GCTCTTAGAATTACACCACCGG 58.804 50.000 0.00 0.00 0.00 5.28
4253 4762 2.093341 TCTTAGAATTACACCACCGGGC 60.093 50.000 6.32 0.00 37.90 6.13
4254 4763 0.542805 TAGAATTACACCACCGGGCC 59.457 55.000 6.32 0.00 37.90 5.80
4267 4776 2.754254 GGGCCAGCTAAAACGGGG 60.754 66.667 4.39 0.00 0.00 5.73
4290 4799 3.318839 CCAAGTGAGGCTTCAATTTGTGA 59.681 43.478 8.94 0.00 39.41 3.58
4294 4803 6.165700 AGTGAGGCTTCAATTTGTGATTTT 57.834 33.333 0.00 0.00 35.70 1.82
4321 4831 9.512588 GTAATATCCAATTTCACATCATCTCCT 57.487 33.333 0.00 0.00 0.00 3.69
4322 4832 7.997773 ATATCCAATTTCACATCATCTCCTG 57.002 36.000 0.00 0.00 0.00 3.86
4341 4851 3.324993 CTGGCGGTGTATTTGCAAATTT 58.675 40.909 28.45 10.22 0.00 1.82
4347 4857 5.231991 GCGGTGTATTTGCAAATTTGATAGG 59.768 40.000 28.45 13.55 0.00 2.57
4348 4858 6.559810 CGGTGTATTTGCAAATTTGATAGGA 58.440 36.000 28.45 6.45 0.00 2.94
4349 4859 7.202526 CGGTGTATTTGCAAATTTGATAGGAT 58.797 34.615 28.45 4.96 0.00 3.24
4350 4860 7.379529 CGGTGTATTTGCAAATTTGATAGGATC 59.620 37.037 28.45 2.72 0.00 3.36
4351 4861 7.653311 GGTGTATTTGCAAATTTGATAGGATCC 59.347 37.037 28.45 2.48 0.00 3.36
4352 4862 7.379529 GTGTATTTGCAAATTTGATAGGATCCG 59.620 37.037 28.45 0.00 0.00 4.18
4353 4863 6.713762 ATTTGCAAATTTGATAGGATCCGA 57.286 33.333 22.31 0.14 0.00 4.55
4354 4864 6.713762 TTTGCAAATTTGATAGGATCCGAT 57.286 33.333 22.31 7.13 0.00 4.18
4355 4865 6.713762 TTGCAAATTTGATAGGATCCGATT 57.286 33.333 22.31 0.00 0.00 3.34
4357 4867 4.919754 GCAAATTTGATAGGATCCGATTGC 59.080 41.667 22.31 10.31 0.00 3.56
4358 4868 5.507817 GCAAATTTGATAGGATCCGATTGCA 60.508 40.000 22.31 7.65 0.00 4.08
4359 4869 5.954296 AATTTGATAGGATCCGATTGCAG 57.046 39.130 8.93 0.00 0.00 4.41
4360 4870 2.462456 TGATAGGATCCGATTGCAGC 57.538 50.000 8.93 0.00 0.00 5.25
4361 4871 1.337167 TGATAGGATCCGATTGCAGCG 60.337 52.381 8.93 4.29 0.00 5.18
4362 4872 0.681733 ATAGGATCCGATTGCAGCGT 59.318 50.000 5.98 0.00 0.00 5.07
4365 4909 1.071605 GGATCCGATTGCAGCGTATC 58.928 55.000 0.00 8.64 0.00 2.24
4384 4928 6.513180 CGTATCATTTACTGAGCTCCCTAAA 58.487 40.000 12.15 12.56 37.28 1.85
4387 4931 7.676683 ATCATTTACTGAGCTCCCTAAACTA 57.323 36.000 12.15 5.32 37.28 2.24
4401 4945 7.334671 GCTCCCTAAACTATTATATCTGCAACC 59.665 40.741 0.00 0.00 0.00 3.77
4457 5002 2.234661 TCAGCGATCCAAACTGTCATCT 59.765 45.455 0.00 0.00 33.12 2.90
4493 5038 4.588106 TCTGTGGGAGCAATTTGATTTTGA 59.412 37.500 0.00 0.00 0.00 2.69
4514 5062 3.559238 ACGTGTGAAATGGAGCAATTC 57.441 42.857 0.00 0.00 0.00 2.17
4521 5069 5.634439 TGTGAAATGGAGCAATTCGAATTTG 59.366 36.000 20.56 16.01 0.00 2.32
4525 5073 2.159531 TGGAGCAATTCGAATTTGCTCG 60.160 45.455 35.97 23.60 43.04 5.03
4548 5096 8.267620 TCGACATGTGAAATGATGAAATAAGT 57.732 30.769 1.15 0.00 0.00 2.24
4574 5122 6.418819 CAGGAAAAGTGAAAGTACATGCAAAG 59.581 38.462 0.00 0.00 0.00 2.77
4575 5123 6.321181 AGGAAAAGTGAAAGTACATGCAAAGA 59.679 34.615 0.00 0.00 0.00 2.52
4576 5124 6.978080 GGAAAAGTGAAAGTACATGCAAAGAA 59.022 34.615 0.00 0.00 0.00 2.52
4588 5136 0.960364 GCAAAGAAGATGCCGGTGGA 60.960 55.000 1.90 0.00 37.85 4.02
4589 5137 1.533625 CAAAGAAGATGCCGGTGGAA 58.466 50.000 1.90 0.00 0.00 3.53
4590 5138 2.094675 CAAAGAAGATGCCGGTGGAAT 58.905 47.619 1.90 0.00 0.00 3.01
4591 5139 2.493278 CAAAGAAGATGCCGGTGGAATT 59.507 45.455 1.90 0.00 0.00 2.17
4592 5140 1.755179 AGAAGATGCCGGTGGAATTG 58.245 50.000 1.90 0.00 0.00 2.32
4593 5141 1.004745 AGAAGATGCCGGTGGAATTGT 59.995 47.619 1.90 0.00 0.00 2.71
4594 5142 1.401905 GAAGATGCCGGTGGAATTGTC 59.598 52.381 1.90 0.00 0.00 3.18
4595 5143 0.744414 AGATGCCGGTGGAATTGTCG 60.744 55.000 1.90 0.00 0.00 4.35
4596 5144 2.322999 GATGCCGGTGGAATTGTCGC 62.323 60.000 1.90 0.00 0.00 5.19
4597 5145 4.160635 GCCGGTGGAATTGTCGCG 62.161 66.667 1.90 0.00 0.00 5.87
4598 5146 3.496131 CCGGTGGAATTGTCGCGG 61.496 66.667 6.13 0.00 0.00 6.46
4599 5147 4.160635 CGGTGGAATTGTCGCGGC 62.161 66.667 2.29 2.29 0.00 6.53
4600 5148 3.053291 GGTGGAATTGTCGCGGCA 61.053 61.111 10.57 10.57 0.00 5.69
4601 5149 2.406616 GGTGGAATTGTCGCGGCAT 61.407 57.895 16.97 0.00 0.00 4.40
4602 5150 1.226379 GTGGAATTGTCGCGGCATG 60.226 57.895 16.97 0.00 0.00 4.06
4603 5151 2.405805 TGGAATTGTCGCGGCATGG 61.406 57.895 16.97 0.00 0.00 3.66
4604 5152 2.278142 GAATTGTCGCGGCATGGC 60.278 61.111 16.97 9.69 0.00 4.40
4605 5153 3.756413 GAATTGTCGCGGCATGGCC 62.756 63.158 16.97 0.00 46.75 5.36
4626 5174 3.929948 GCCGCGGCAAAGAGATCG 61.930 66.667 43.55 5.65 41.49 3.69
4627 5175 3.929948 CCGCGGCAAAGAGATCGC 61.930 66.667 14.67 0.00 44.04 4.58
4628 5176 2.887568 CGCGGCAAAGAGATCGCT 60.888 61.111 0.00 0.00 45.11 4.93
4629 5177 2.864931 CGCGGCAAAGAGATCGCTC 61.865 63.158 0.00 0.00 45.11 5.03
4630 5178 2.529619 GCGGCAAAGAGATCGCTCC 61.530 63.158 0.00 0.00 44.10 4.70
4631 5179 1.142748 CGGCAAAGAGATCGCTCCT 59.857 57.895 0.00 0.00 42.30 3.69
4632 5180 1.150567 CGGCAAAGAGATCGCTCCTG 61.151 60.000 0.00 1.91 42.30 3.86
4633 5181 0.813210 GGCAAAGAGATCGCTCCTGG 60.813 60.000 0.00 0.00 42.30 4.45
4634 5182 0.176680 GCAAAGAGATCGCTCCTGGA 59.823 55.000 0.00 0.00 42.30 3.86
4635 5183 1.202627 GCAAAGAGATCGCTCCTGGAT 60.203 52.381 0.00 0.00 42.30 3.41
4636 5184 2.036475 GCAAAGAGATCGCTCCTGGATA 59.964 50.000 0.00 0.00 42.30 2.59
4637 5185 3.306641 GCAAAGAGATCGCTCCTGGATAT 60.307 47.826 0.00 0.00 42.30 1.63
4638 5186 4.802248 GCAAAGAGATCGCTCCTGGATATT 60.802 45.833 0.00 0.00 42.30 1.28
4639 5187 4.799564 AAGAGATCGCTCCTGGATATTC 57.200 45.455 0.00 0.00 42.30 1.75
4640 5188 3.772387 AGAGATCGCTCCTGGATATTCA 58.228 45.455 0.00 0.00 42.30 2.57
4641 5189 3.763360 AGAGATCGCTCCTGGATATTCAG 59.237 47.826 3.75 3.75 42.30 3.02
4642 5190 3.761218 GAGATCGCTCCTGGATATTCAGA 59.239 47.826 13.01 0.00 36.93 3.27
4643 5191 4.155709 AGATCGCTCCTGGATATTCAGAA 58.844 43.478 13.01 0.00 36.93 3.02
4644 5192 4.220382 AGATCGCTCCTGGATATTCAGAAG 59.780 45.833 13.01 2.16 36.93 2.85
4645 5193 2.036475 TCGCTCCTGGATATTCAGAAGC 59.964 50.000 12.15 12.15 40.97 3.86
4646 5194 2.224137 CGCTCCTGGATATTCAGAAGCA 60.224 50.000 20.98 0.00 43.94 3.91
4647 5195 3.742327 CGCTCCTGGATATTCAGAAGCAA 60.742 47.826 20.98 0.00 43.94 3.91
4648 5196 3.814283 GCTCCTGGATATTCAGAAGCAAG 59.186 47.826 16.92 5.44 43.35 4.01
4649 5197 4.685575 GCTCCTGGATATTCAGAAGCAAGT 60.686 45.833 16.92 0.00 43.35 3.16
4650 5198 4.774124 TCCTGGATATTCAGAAGCAAGTG 58.226 43.478 13.01 0.00 36.93 3.16
4651 5199 4.225942 TCCTGGATATTCAGAAGCAAGTGT 59.774 41.667 13.01 0.00 36.93 3.55
4652 5200 4.334759 CCTGGATATTCAGAAGCAAGTGTG 59.665 45.833 13.01 0.00 36.93 3.82
4653 5201 4.264253 TGGATATTCAGAAGCAAGTGTGG 58.736 43.478 0.00 0.00 0.00 4.17
4654 5202 3.065925 GGATATTCAGAAGCAAGTGTGGC 59.934 47.826 0.00 0.00 0.00 5.01
4655 5203 1.251251 ATTCAGAAGCAAGTGTGGCC 58.749 50.000 0.00 0.00 0.00 5.36
4656 5204 0.106769 TTCAGAAGCAAGTGTGGCCA 60.107 50.000 0.00 0.00 0.00 5.36
4657 5205 0.535780 TCAGAAGCAAGTGTGGCCAG 60.536 55.000 5.11 0.00 0.00 4.85
4658 5206 0.535780 CAGAAGCAAGTGTGGCCAGA 60.536 55.000 5.11 0.00 0.00 3.86
4659 5207 0.403271 AGAAGCAAGTGTGGCCAGAT 59.597 50.000 5.11 0.00 0.00 2.90
4660 5208 0.524862 GAAGCAAGTGTGGCCAGATG 59.475 55.000 5.11 1.39 0.00 2.90
4661 5209 0.178981 AAGCAAGTGTGGCCAGATGT 60.179 50.000 5.11 0.00 0.00 3.06
4662 5210 0.892358 AGCAAGTGTGGCCAGATGTG 60.892 55.000 5.11 8.68 0.00 3.21
4663 5211 0.890542 GCAAGTGTGGCCAGATGTGA 60.891 55.000 5.11 0.00 0.00 3.58
4664 5212 1.830279 CAAGTGTGGCCAGATGTGAT 58.170 50.000 5.11 0.00 0.00 3.06
4665 5213 2.165167 CAAGTGTGGCCAGATGTGATT 58.835 47.619 5.11 0.00 0.00 2.57
4666 5214 2.559668 CAAGTGTGGCCAGATGTGATTT 59.440 45.455 5.11 0.00 0.00 2.17
4667 5215 2.880443 AGTGTGGCCAGATGTGATTTT 58.120 42.857 5.11 0.00 0.00 1.82
4668 5216 2.821969 AGTGTGGCCAGATGTGATTTTC 59.178 45.455 5.11 0.00 0.00 2.29
4669 5217 2.821969 GTGTGGCCAGATGTGATTTTCT 59.178 45.455 5.11 0.00 0.00 2.52
4670 5218 2.821378 TGTGGCCAGATGTGATTTTCTG 59.179 45.455 5.11 0.00 39.25 3.02
4671 5219 2.821969 GTGGCCAGATGTGATTTTCTGT 59.178 45.455 5.11 0.00 38.12 3.41
4672 5220 3.084039 TGGCCAGATGTGATTTTCTGTC 58.916 45.455 0.00 0.00 38.12 3.51
4673 5221 3.084039 GGCCAGATGTGATTTTCTGTCA 58.916 45.455 0.00 0.00 38.12 3.58
4674 5222 3.128242 GGCCAGATGTGATTTTCTGTCAG 59.872 47.826 0.00 0.00 38.12 3.51
4675 5223 4.005650 GCCAGATGTGATTTTCTGTCAGA 58.994 43.478 0.00 0.00 38.12 3.27
4676 5224 4.456911 GCCAGATGTGATTTTCTGTCAGAA 59.543 41.667 11.36 11.36 38.12 3.02
4677 5225 5.125097 GCCAGATGTGATTTTCTGTCAGAAT 59.875 40.000 15.95 2.17 38.12 2.40
4678 5226 6.677431 GCCAGATGTGATTTTCTGTCAGAATC 60.677 42.308 15.95 11.85 38.12 2.52
4679 5227 6.373495 CCAGATGTGATTTTCTGTCAGAATCA 59.627 38.462 15.95 14.17 38.12 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 0.901580 CTTTGGCATGCAACCCCTCT 60.902 55.000 21.36 0.00 0.00 3.69
96 97 2.476821 ACCACTTTCGTACGACTTTGG 58.523 47.619 25.79 25.79 0.00 3.28
99 100 4.037923 TCCTTAACCACTTTCGTACGACTT 59.962 41.667 19.36 1.66 0.00 3.01
241 246 0.391528 CCTCACATCACATCACGCCA 60.392 55.000 0.00 0.00 0.00 5.69
292 297 3.005554 CCTGCTTCATCATCGACAACTT 58.994 45.455 0.00 0.00 0.00 2.66
296 301 0.178767 CCCCTGCTTCATCATCGACA 59.821 55.000 0.00 0.00 0.00 4.35
416 423 5.161943 TGCTCATATTCTGATGCATAGCT 57.838 39.130 0.00 0.00 34.91 3.32
433 440 8.830201 ATTTTGCTATTGTTATTGTTTGCTCA 57.170 26.923 0.00 0.00 0.00 4.26
449 456 7.013942 TCTCATGCTTGCATTAGATTTTGCTAT 59.986 33.333 13.50 0.00 39.60 2.97
630 640 6.862608 TCATGTCATGCACTTGTTTGTTTATC 59.137 34.615 8.03 0.00 32.92 1.75
635 647 3.548616 CGTCATGTCATGCACTTGTTTGT 60.549 43.478 8.03 0.00 32.92 2.83
704 716 1.318576 CCCGCATGTTATCCCCTTTC 58.681 55.000 0.00 0.00 0.00 2.62
732 745 2.027929 TCCGAAAATGCCTAACCTCGAA 60.028 45.455 0.00 0.00 0.00 3.71
733 746 1.551430 TCCGAAAATGCCTAACCTCGA 59.449 47.619 0.00 0.00 0.00 4.04
774 788 4.899239 GATCGGAGCAGGCACGGG 62.899 72.222 8.18 0.00 0.00 5.28
778 792 2.285773 ACACAGATCGGAGCAGGCA 61.286 57.895 0.00 0.00 0.00 4.75
780 794 1.153489 CCACACAGATCGGAGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
802 817 4.493747 GCGAGAAGGGGACGGACG 62.494 72.222 0.00 0.00 0.00 4.79
888 915 1.337260 GCTTCTCGCTTCTGGTTCTCA 60.337 52.381 0.00 0.00 35.14 3.27
1243 1271 1.214589 GCGGACTAGAAACAGCGGA 59.785 57.895 0.00 0.00 0.00 5.54
1245 1273 3.374330 CGCGGACTAGAAACAGCG 58.626 61.111 14.96 14.96 42.72 5.18
1252 1280 1.378911 TAGGGTTGCGCGGACTAGA 60.379 57.895 8.83 0.00 0.00 2.43
1253 1281 1.065928 CTAGGGTTGCGCGGACTAG 59.934 63.158 8.83 8.86 0.00 2.57
1272 1300 1.742880 CACACACGCATGGAGGGAG 60.743 63.158 0.00 0.00 0.00 4.30
1277 1305 1.803555 CATAACACACACACGCATGGA 59.196 47.619 0.00 0.00 0.00 3.41
1279 1307 1.605500 GCATAACACACACACGCATG 58.394 50.000 0.00 0.00 0.00 4.06
1281 1309 0.815615 TGGCATAACACACACACGCA 60.816 50.000 0.00 0.00 0.00 5.24
1296 1331 1.447838 GCGGATCGTCTTTCTGGCA 60.448 57.895 0.00 0.00 0.00 4.92
1321 1356 6.812656 AGCAAATCGCAATCAAACAATATGAA 59.187 30.769 0.00 0.00 46.13 2.57
1325 1360 6.155136 TCAAGCAAATCGCAATCAAACAATA 58.845 32.000 0.00 0.00 46.13 1.90
1328 1363 3.974912 TCAAGCAAATCGCAATCAAACA 58.025 36.364 0.00 0.00 46.13 2.83
1387 1433 2.296190 ACACGCTATCGGATCAAGCATA 59.704 45.455 12.01 0.00 40.69 3.14
1402 1448 1.941294 CGGAGACACTATCTACACGCT 59.059 52.381 0.00 0.00 38.35 5.07
1468 1527 6.511416 TGAATTTTCACCAATCACGAACATT 58.489 32.000 0.00 0.00 31.01 2.71
1473 1532 5.766150 AACTGAATTTTCACCAATCACGA 57.234 34.783 0.00 0.00 32.90 4.35
1507 1566 7.225784 ACATATGAGCAGAGTTAGGACTATG 57.774 40.000 10.38 0.00 45.62 2.23
1556 1626 8.807948 TTGAACAAAATTCAATACCCCAAAAA 57.192 26.923 0.00 0.00 33.90 1.94
1641 1711 7.043325 GGTGAGCATTTAAGTCGTCAGTATAAG 60.043 40.741 0.00 0.00 0.00 1.73
1642 1712 6.755141 GGTGAGCATTTAAGTCGTCAGTATAA 59.245 38.462 0.00 0.00 0.00 0.98
1644 1714 5.109903 GGTGAGCATTTAAGTCGTCAGTAT 58.890 41.667 0.00 0.00 0.00 2.12
1645 1715 4.021807 TGGTGAGCATTTAAGTCGTCAGTA 60.022 41.667 0.00 0.00 0.00 2.74
1652 1722 6.146021 CCAAAATTGTGGTGAGCATTTAAGTC 59.854 38.462 6.48 0.00 33.63 3.01
1654 1724 6.470557 CCAAAATTGTGGTGAGCATTTAAG 57.529 37.500 6.48 0.00 33.63 1.85
1666 1736 6.686630 TCTAACTGCAATACCAAAATTGTGG 58.313 36.000 13.53 13.53 44.92 4.17
1714 1784 0.035056 ATGAGCCCGGTTCTTGAAGG 60.035 55.000 0.00 0.00 0.00 3.46
2037 2506 3.821421 AGATTAACCAGTGGATCGACC 57.179 47.619 18.40 0.10 39.54 4.79
2158 2627 7.429340 GTGCTAATGATACAACAAATGTACTGC 59.571 37.037 0.00 0.00 46.90 4.40
2159 2628 8.668353 AGTGCTAATGATACAACAAATGTACTG 58.332 33.333 0.00 0.00 46.90 2.74
2227 2699 3.261643 TCTCAAACAGCTCAGGATGCTTA 59.738 43.478 0.00 0.00 38.92 3.09
2364 2836 2.189784 GGAGGCCCGTAAAGGAGC 59.810 66.667 0.00 0.00 45.00 4.70
2367 2839 0.979187 TACCTGGAGGCCCGTAAAGG 60.979 60.000 0.00 2.17 39.32 3.11
2469 2941 4.641868 TGGACCCCTCTCCAATATACTTT 58.358 43.478 0.00 0.00 37.39 2.66
2487 2959 1.002087 AGTTCACGAACCATCCTGGAC 59.998 52.381 0.00 0.00 40.96 4.02
2491 2963 3.181454 ACAAAGAGTTCACGAACCATCCT 60.181 43.478 6.30 0.00 42.06 3.24
2649 3123 1.816835 TGTGTTAGCCTCTGGTACGAG 59.183 52.381 0.00 0.00 0.00 4.18
2651 3125 2.961526 ATGTGTTAGCCTCTGGTACG 57.038 50.000 0.00 0.00 0.00 3.67
2652 3126 3.689649 CCAAATGTGTTAGCCTCTGGTAC 59.310 47.826 0.00 0.00 0.00 3.34
2686 3160 1.826921 GGATGGTGCATGCTCCCTG 60.827 63.158 30.55 0.00 0.00 4.45
3000 3474 7.441017 AGAATAGATAATTCAGAGTCAGCACC 58.559 38.462 0.00 0.00 45.58 5.01
3238 3719 0.028505 GATGTGCTTGCCTACATGCG 59.971 55.000 3.78 0.00 47.00 4.73
3257 3738 9.056005 TGCAGCAGATTATAGTTATTTTGTAGG 57.944 33.333 0.00 0.00 0.00 3.18
3501 3993 5.078411 GAGTTAGACTCATGATGTGTGGT 57.922 43.478 4.71 0.00 44.45 4.16
3625 4118 4.122776 CGGTATCCTTCTTCATCACCTTG 58.877 47.826 0.00 0.00 0.00 3.61
3772 4265 1.661617 CAGTTGTCGACACGGTTCAAA 59.338 47.619 19.90 0.00 0.00 2.69
3797 4290 0.818445 CCCTGATAAGGCAGCTGCAG 60.818 60.000 37.63 24.84 44.36 4.41
3809 4312 9.777008 ACCCAATAAAGAAATTTAACCCTGATA 57.223 29.630 0.00 0.00 0.00 2.15
3848 4351 1.670083 GAACGGTTCCCAACTCCCG 60.670 63.158 9.75 0.00 45.72 5.14
3850 4353 2.322830 GCGAACGGTTCCCAACTCC 61.323 63.158 14.83 0.00 0.00 3.85
3854 4357 2.548295 GCAAGCGAACGGTTCCCAA 61.548 57.895 14.83 0.00 33.16 4.12
3868 4371 7.642071 AAAGCAACATTACATTACAAGCAAG 57.358 32.000 0.00 0.00 0.00 4.01
3883 4386 3.308438 ACGTAGTCGGTAAAGCAACAT 57.692 42.857 0.00 0.00 29.74 2.71
3893 4396 2.615912 GCTACCAATCTACGTAGTCGGT 59.384 50.000 25.48 25.48 43.93 4.69
3894 4397 2.031333 GGCTACCAATCTACGTAGTCGG 60.031 54.545 21.53 20.25 43.93 4.79
3901 4404 0.669077 AGCGAGGCTACCAATCTACG 59.331 55.000 0.00 0.00 36.99 3.51
3902 4405 1.409427 ACAGCGAGGCTACCAATCTAC 59.591 52.381 0.00 0.00 36.40 2.59
3904 4407 0.176680 CACAGCGAGGCTACCAATCT 59.823 55.000 0.00 0.00 36.40 2.40
3906 4409 1.450312 GCACAGCGAGGCTACCAAT 60.450 57.895 0.00 0.00 36.40 3.16
3908 4411 2.997315 AGCACAGCGAGGCTACCA 60.997 61.111 0.00 0.00 38.90 3.25
3909 4412 2.510238 CAGCACAGCGAGGCTACC 60.510 66.667 0.00 0.00 38.56 3.18
3910 4413 1.518133 CTCAGCACAGCGAGGCTAC 60.518 63.158 0.00 0.00 38.56 3.58
3950 4453 6.479660 ACATTTGCCACATTCAAGTAAAACAG 59.520 34.615 0.00 0.00 0.00 3.16
3989 4492 7.038658 ACAAATAGCTAAGGACTGAAGAAGAGT 60.039 37.037 0.00 0.00 0.00 3.24
3991 4494 7.246171 ACAAATAGCTAAGGACTGAAGAAGA 57.754 36.000 0.00 0.00 0.00 2.87
3992 4495 7.821846 AGAACAAATAGCTAAGGACTGAAGAAG 59.178 37.037 0.00 0.00 0.00 2.85
4000 4503 8.100508 ACAAAAGAGAACAAATAGCTAAGGAC 57.899 34.615 0.00 0.00 0.00 3.85
4001 4504 7.390718 GGACAAAAGAGAACAAATAGCTAAGGA 59.609 37.037 0.00 0.00 0.00 3.36
4002 4505 7.174946 TGGACAAAAGAGAACAAATAGCTAAGG 59.825 37.037 0.00 0.00 0.00 2.69
4003 4506 8.099364 TGGACAAAAGAGAACAAATAGCTAAG 57.901 34.615 0.00 0.00 0.00 2.18
4004 4507 8.635765 ATGGACAAAAGAGAACAAATAGCTAA 57.364 30.769 0.00 0.00 0.00 3.09
4005 4508 7.336931 GGATGGACAAAAGAGAACAAATAGCTA 59.663 37.037 0.00 0.00 0.00 3.32
4006 4509 6.151817 GGATGGACAAAAGAGAACAAATAGCT 59.848 38.462 0.00 0.00 0.00 3.32
4007 4510 6.325596 GGATGGACAAAAGAGAACAAATAGC 58.674 40.000 0.00 0.00 0.00 2.97
4008 4511 6.371548 TCGGATGGACAAAAGAGAACAAATAG 59.628 38.462 0.00 0.00 0.00 1.73
4009 4512 6.234920 TCGGATGGACAAAAGAGAACAAATA 58.765 36.000 0.00 0.00 0.00 1.40
4010 4513 5.070001 TCGGATGGACAAAAGAGAACAAAT 58.930 37.500 0.00 0.00 0.00 2.32
4011 4514 4.456535 TCGGATGGACAAAAGAGAACAAA 58.543 39.130 0.00 0.00 0.00 2.83
4032 4535 6.719829 TGAGTTCCCTTTTCTTATTTCCCTTC 59.280 38.462 0.00 0.00 0.00 3.46
4037 4540 9.631452 CTCATTTGAGTTCCCTTTTCTTATTTC 57.369 33.333 0.00 0.00 37.40 2.17
4070 4577 9.884465 GTCAGTTCCATAACTCATTATTATTGC 57.116 33.333 0.00 0.00 44.28 3.56
4073 4580 9.277783 GCTGTCAGTTCCATAACTCATTATTAT 57.722 33.333 0.93 0.00 44.28 1.28
4075 4582 7.341805 AGCTGTCAGTTCCATAACTCATTATT 58.658 34.615 0.93 0.00 44.28 1.40
4076 4583 6.893583 AGCTGTCAGTTCCATAACTCATTAT 58.106 36.000 0.93 0.00 44.28 1.28
4077 4584 6.299805 AGCTGTCAGTTCCATAACTCATTA 57.700 37.500 0.93 0.00 44.28 1.90
4078 4585 5.171339 AGCTGTCAGTTCCATAACTCATT 57.829 39.130 0.93 0.00 44.28 2.57
4079 4586 4.383552 GGAGCTGTCAGTTCCATAACTCAT 60.384 45.833 26.12 0.00 44.28 2.90
4080 4587 3.055819 GGAGCTGTCAGTTCCATAACTCA 60.056 47.826 26.12 0.00 44.28 3.41
4082 4589 3.177228 AGGAGCTGTCAGTTCCATAACT 58.823 45.455 30.63 12.37 46.66 2.24
4083 4590 3.055819 TGAGGAGCTGTCAGTTCCATAAC 60.056 47.826 30.63 20.28 46.66 1.89
4084 4591 3.055819 GTGAGGAGCTGTCAGTTCCATAA 60.056 47.826 30.63 16.55 46.66 1.90
4090 4599 0.394565 GTGGTGAGGAGCTGTCAGTT 59.605 55.000 0.93 0.00 0.00 3.16
4095 4604 4.008933 GCCGTGGTGAGGAGCTGT 62.009 66.667 0.00 0.00 0.00 4.40
4097 4606 3.699894 CAGCCGTGGTGAGGAGCT 61.700 66.667 0.00 0.00 32.22 4.09
4108 4617 2.375345 CCCCTTATGGTCCAGCCGT 61.375 63.158 0.00 0.00 41.21 5.68
4113 4622 1.635817 GCTGCTCCCCTTATGGTCCA 61.636 60.000 0.00 0.00 0.00 4.02
4114 4623 1.149401 GCTGCTCCCCTTATGGTCC 59.851 63.158 0.00 0.00 0.00 4.46
4115 4624 0.107643 GAGCTGCTCCCCTTATGGTC 59.892 60.000 18.80 0.00 0.00 4.02
4116 4625 0.327000 AGAGCTGCTCCCCTTATGGT 60.327 55.000 25.09 1.12 0.00 3.55
4117 4626 0.842635 AAGAGCTGCTCCCCTTATGG 59.157 55.000 25.09 0.00 0.00 2.74
4118 4627 1.487976 TCAAGAGCTGCTCCCCTTATG 59.512 52.381 25.09 14.36 0.00 1.90
4119 4628 1.885049 TCAAGAGCTGCTCCCCTTAT 58.115 50.000 25.09 3.43 0.00 1.73
4120 4629 1.487976 CATCAAGAGCTGCTCCCCTTA 59.512 52.381 25.09 7.99 0.00 2.69
4121 4630 0.255318 CATCAAGAGCTGCTCCCCTT 59.745 55.000 25.09 11.15 0.00 3.95
4122 4631 1.913722 CATCAAGAGCTGCTCCCCT 59.086 57.895 25.09 8.28 0.00 4.79
4123 4632 1.823041 GCATCAAGAGCTGCTCCCC 60.823 63.158 25.09 2.11 34.18 4.81
4124 4633 1.823041 GGCATCAAGAGCTGCTCCC 60.823 63.158 25.09 14.43 37.08 4.30
4125 4634 0.394080 AAGGCATCAAGAGCTGCTCC 60.394 55.000 25.09 9.51 37.08 4.70
4126 4635 1.461559 AAAGGCATCAAGAGCTGCTC 58.538 50.000 21.72 21.72 37.08 4.26
4127 4636 2.795231 TAAAGGCATCAAGAGCTGCT 57.205 45.000 0.00 0.00 37.08 4.24
4128 4637 2.032204 CGATAAAGGCATCAAGAGCTGC 60.032 50.000 0.00 0.00 36.19 5.25
4129 4638 3.201290 ACGATAAAGGCATCAAGAGCTG 58.799 45.455 0.00 0.00 0.00 4.24
4130 4639 3.550437 ACGATAAAGGCATCAAGAGCT 57.450 42.857 0.00 0.00 0.00 4.09
4131 4640 4.210120 CACTACGATAAAGGCATCAAGAGC 59.790 45.833 0.00 0.00 0.00 4.09
4132 4641 5.352284 ACACTACGATAAAGGCATCAAGAG 58.648 41.667 0.00 0.00 0.00 2.85
4133 4642 5.105513 TGACACTACGATAAAGGCATCAAGA 60.106 40.000 0.00 0.00 0.00 3.02
4134 4643 5.109210 TGACACTACGATAAAGGCATCAAG 58.891 41.667 0.00 0.00 0.00 3.02
4135 4644 5.079689 TGACACTACGATAAAGGCATCAA 57.920 39.130 0.00 0.00 0.00 2.57
4136 4645 4.729227 TGACACTACGATAAAGGCATCA 57.271 40.909 0.00 0.00 0.00 3.07
4137 4646 6.037172 ACAATTGACACTACGATAAAGGCATC 59.963 38.462 13.59 0.00 0.00 3.91
4138 4647 5.880332 ACAATTGACACTACGATAAAGGCAT 59.120 36.000 13.59 0.00 0.00 4.40
4139 4648 5.242434 ACAATTGACACTACGATAAAGGCA 58.758 37.500 13.59 0.00 0.00 4.75
4140 4649 5.350365 TGACAATTGACACTACGATAAAGGC 59.650 40.000 13.59 0.00 0.00 4.35
4141 4650 6.961359 TGACAATTGACACTACGATAAAGG 57.039 37.500 13.59 0.00 0.00 3.11
4167 4676 9.257651 GTAATTCACCGTGCTTCTAGTATATTT 57.742 33.333 0.00 0.00 0.00 1.40
4174 4683 4.260375 GCATGTAATTCACCGTGCTTCTAG 60.260 45.833 8.75 0.00 35.81 2.43
4175 4684 3.621268 GCATGTAATTCACCGTGCTTCTA 59.379 43.478 8.75 0.00 35.81 2.10
4178 4687 2.420022 GAGCATGTAATTCACCGTGCTT 59.580 45.455 16.14 5.35 43.87 3.91
4180 4689 2.009774 AGAGCATGTAATTCACCGTGC 58.990 47.619 8.19 8.19 37.79 5.34
4181 4690 4.870426 ACTAAGAGCATGTAATTCACCGTG 59.130 41.667 0.00 0.00 0.00 4.94
4182 4691 4.870426 CACTAAGAGCATGTAATTCACCGT 59.130 41.667 0.00 0.00 0.00 4.83
4183 4692 5.109210 TCACTAAGAGCATGTAATTCACCG 58.891 41.667 0.00 0.00 0.00 4.94
4185 4694 8.648557 TGTATCACTAAGAGCATGTAATTCAC 57.351 34.615 0.00 0.00 0.00 3.18
4186 4695 9.317936 CTTGTATCACTAAGAGCATGTAATTCA 57.682 33.333 0.00 0.00 0.00 2.57
4187 4696 9.319143 ACTTGTATCACTAAGAGCATGTAATTC 57.681 33.333 0.00 0.00 0.00 2.17
4188 4697 9.102757 CACTTGTATCACTAAGAGCATGTAATT 57.897 33.333 0.00 0.00 0.00 1.40
4202 4711 1.343142 TCACCGTGCACTTGTATCACT 59.657 47.619 16.19 0.00 0.00 3.41
4208 4717 2.566913 TGTAATTCACCGTGCACTTGT 58.433 42.857 16.19 9.20 0.00 3.16
4217 4726 6.851222 ATTCTAAGAGCATGTAATTCACCG 57.149 37.500 0.00 0.00 0.00 4.94
4223 4732 7.499232 GGTGGTGTAATTCTAAGAGCATGTAAT 59.501 37.037 0.00 0.00 0.00 1.89
4225 4734 6.346096 GGTGGTGTAATTCTAAGAGCATGTA 58.654 40.000 0.00 0.00 0.00 2.29
4226 4735 5.186198 GGTGGTGTAATTCTAAGAGCATGT 58.814 41.667 0.00 0.00 0.00 3.21
4227 4736 4.271049 CGGTGGTGTAATTCTAAGAGCATG 59.729 45.833 0.00 0.00 0.00 4.06
4228 4737 4.442706 CGGTGGTGTAATTCTAAGAGCAT 58.557 43.478 0.00 0.00 0.00 3.79
4229 4738 3.369052 CCGGTGGTGTAATTCTAAGAGCA 60.369 47.826 0.00 0.00 0.00 4.26
4230 4739 3.195661 CCGGTGGTGTAATTCTAAGAGC 58.804 50.000 0.00 0.00 0.00 4.09
4231 4740 3.793559 CCCGGTGGTGTAATTCTAAGAG 58.206 50.000 0.00 0.00 0.00 2.85
4232 4741 2.093341 GCCCGGTGGTGTAATTCTAAGA 60.093 50.000 0.00 0.00 0.00 2.10
4233 4742 2.285977 GCCCGGTGGTGTAATTCTAAG 58.714 52.381 0.00 0.00 0.00 2.18
4234 4743 1.065272 GGCCCGGTGGTGTAATTCTAA 60.065 52.381 0.00 0.00 0.00 2.10
4235 4744 0.542805 GGCCCGGTGGTGTAATTCTA 59.457 55.000 0.00 0.00 0.00 2.10
4236 4745 1.301954 GGCCCGGTGGTGTAATTCT 59.698 57.895 0.00 0.00 0.00 2.40
4237 4746 1.001887 TGGCCCGGTGGTGTAATTC 60.002 57.895 0.00 0.00 0.00 2.17
4238 4747 1.001393 CTGGCCCGGTGGTGTAATT 60.001 57.895 0.00 0.00 0.00 1.40
4239 4748 2.674754 CTGGCCCGGTGGTGTAAT 59.325 61.111 0.00 0.00 0.00 1.89
4240 4749 4.338710 GCTGGCCCGGTGGTGTAA 62.339 66.667 0.00 0.00 0.00 2.41
4241 4750 3.908904 TAGCTGGCCCGGTGGTGTA 62.909 63.158 9.36 0.00 0.00 2.90
4249 4758 3.131478 CCCGTTTTAGCTGGCCCG 61.131 66.667 0.00 0.00 0.00 6.13
4251 4760 3.449227 GCCCCGTTTTAGCTGGCC 61.449 66.667 0.00 0.00 36.07 5.36
4253 4762 1.595093 CTTGGCCCCGTTTTAGCTGG 61.595 60.000 0.00 0.00 0.00 4.85
4254 4763 0.893727 ACTTGGCCCCGTTTTAGCTG 60.894 55.000 0.00 0.00 0.00 4.24
4267 4776 7.523439 ATCACAAATTGAAGCCTCACTTGGC 62.523 44.000 0.00 0.00 44.07 4.52
4294 4803 9.288576 GGAGATGATGTGAAATTGGATATTACA 57.711 33.333 0.00 0.00 0.00 2.41
4303 4812 3.242969 CGCCAGGAGATGATGTGAAATTG 60.243 47.826 0.00 0.00 0.00 2.32
4304 4813 2.947652 CGCCAGGAGATGATGTGAAATT 59.052 45.455 0.00 0.00 0.00 1.82
4313 4822 1.496060 AATACACCGCCAGGAGATGA 58.504 50.000 0.00 0.00 41.02 2.92
4314 4823 1.942657 CAAATACACCGCCAGGAGATG 59.057 52.381 0.00 0.00 41.02 2.90
4319 4829 0.600557 TTTGCAAATACACCGCCAGG 59.399 50.000 8.05 0.00 45.13 4.45
4321 4831 3.062763 CAAATTTGCAAATACACCGCCA 58.937 40.909 24.35 0.00 0.00 5.69
4322 4832 3.321497 TCAAATTTGCAAATACACCGCC 58.679 40.909 24.35 0.00 0.00 6.13
4341 4851 1.337167 CGCTGCAATCGGATCCTATCA 60.337 52.381 10.75 0.00 0.00 2.15
4347 4857 1.783284 TGATACGCTGCAATCGGATC 58.217 50.000 20.38 20.38 45.05 3.36
4348 4858 2.462456 ATGATACGCTGCAATCGGAT 57.538 45.000 5.53 5.53 32.37 4.18
4349 4859 2.238942 AATGATACGCTGCAATCGGA 57.761 45.000 11.89 4.36 0.00 4.55
4350 4860 3.494626 AGTAAATGATACGCTGCAATCGG 59.505 43.478 11.89 0.00 0.00 4.18
4351 4861 4.209080 TCAGTAAATGATACGCTGCAATCG 59.791 41.667 0.00 6.49 31.12 3.34
4352 4862 5.657470 TCAGTAAATGATACGCTGCAATC 57.343 39.130 0.00 2.72 31.12 2.67
4353 4863 4.024556 GCTCAGTAAATGATACGCTGCAAT 60.025 41.667 0.00 0.00 37.28 3.56
4354 4864 3.309682 GCTCAGTAAATGATACGCTGCAA 59.690 43.478 0.00 0.00 37.28 4.08
4355 4865 2.866156 GCTCAGTAAATGATACGCTGCA 59.134 45.455 0.00 0.00 37.28 4.41
4357 4867 3.738282 GGAGCTCAGTAAATGATACGCTG 59.262 47.826 17.19 0.00 37.16 5.18
4358 4868 3.243907 GGGAGCTCAGTAAATGATACGCT 60.244 47.826 17.19 0.00 39.08 5.07
4359 4869 3.060602 GGGAGCTCAGTAAATGATACGC 58.939 50.000 17.19 0.00 37.28 4.42
4360 4870 4.592485 AGGGAGCTCAGTAAATGATACG 57.408 45.455 17.19 0.00 37.28 3.06
4361 4871 7.501844 AGTTTAGGGAGCTCAGTAAATGATAC 58.498 38.462 17.19 6.95 37.28 2.24
4362 4872 7.676683 AGTTTAGGGAGCTCAGTAAATGATA 57.323 36.000 17.19 0.00 37.28 2.15
4384 4928 7.950684 TCCAGTAGAGGTTGCAGATATAATAGT 59.049 37.037 0.00 0.00 0.00 2.12
4387 4931 7.805083 ATCCAGTAGAGGTTGCAGATATAAT 57.195 36.000 0.00 0.00 0.00 1.28
4401 4945 3.057969 TGCACCACAAATCCAGTAGAG 57.942 47.619 0.00 0.00 0.00 2.43
4457 5002 3.519510 CTCCCACAGAAGTCCTAATCCAA 59.480 47.826 0.00 0.00 0.00 3.53
4493 5038 3.609175 CGAATTGCTCCATTTCACACGTT 60.609 43.478 0.00 0.00 0.00 3.99
4514 5062 3.454042 TTCACATGTCGAGCAAATTCG 57.546 42.857 0.00 0.00 41.79 3.34
4521 5069 4.604843 TTCATCATTTCACATGTCGAGC 57.395 40.909 0.00 0.00 0.00 5.03
4525 5073 9.499585 CTGACTTATTTCATCATTTCACATGTC 57.500 33.333 0.00 0.00 0.00 3.06
4548 5096 5.129634 TGCATGTACTTTCACTTTTCCTGA 58.870 37.500 0.00 0.00 0.00 3.86
4574 5122 1.401905 GACAATTCCACCGGCATCTTC 59.598 52.381 0.00 0.00 0.00 2.87
4575 5123 1.463674 GACAATTCCACCGGCATCTT 58.536 50.000 0.00 0.00 0.00 2.40
4576 5124 0.744414 CGACAATTCCACCGGCATCT 60.744 55.000 0.00 0.00 0.00 2.90
4588 5136 3.825611 GGCCATGCCGCGACAATT 61.826 61.111 8.23 0.00 39.62 2.32
4609 5157 3.929948 CGATCTCTTTGCCGCGGC 61.930 66.667 42.35 42.35 42.35 6.53
4610 5158 3.929948 GCGATCTCTTTGCCGCGG 61.930 66.667 24.05 24.05 38.27 6.46
4612 5160 2.529619 GGAGCGATCTCTTTGCCGC 61.530 63.158 0.00 0.00 47.00 6.53
4613 5161 1.142748 AGGAGCGATCTCTTTGCCG 59.857 57.895 0.00 0.00 39.31 5.69
4614 5162 0.813210 CCAGGAGCGATCTCTTTGCC 60.813 60.000 0.00 0.00 39.31 4.52
4615 5163 0.176680 TCCAGGAGCGATCTCTTTGC 59.823 55.000 0.00 0.00 39.31 3.68
4616 5164 2.906691 ATCCAGGAGCGATCTCTTTG 57.093 50.000 0.00 0.00 39.31 2.77
4617 5165 4.590647 TGAATATCCAGGAGCGATCTCTTT 59.409 41.667 0.00 0.00 39.31 2.52
4618 5166 4.155709 TGAATATCCAGGAGCGATCTCTT 58.844 43.478 0.00 0.00 39.31 2.85
4619 5167 3.763360 CTGAATATCCAGGAGCGATCTCT 59.237 47.826 0.00 0.00 39.31 3.10
4620 5168 3.761218 TCTGAATATCCAGGAGCGATCTC 59.239 47.826 0.00 0.00 38.62 2.75
4621 5169 3.772387 TCTGAATATCCAGGAGCGATCT 58.228 45.455 0.00 0.00 34.99 2.75
4622 5170 4.493547 CTTCTGAATATCCAGGAGCGATC 58.506 47.826 0.00 0.00 33.41 3.69
4623 5171 4.533919 CTTCTGAATATCCAGGAGCGAT 57.466 45.455 0.00 0.00 33.41 4.58
4627 5175 4.815308 CACTTGCTTCTGAATATCCAGGAG 59.185 45.833 0.00 0.00 41.65 3.69
4628 5176 4.225942 ACACTTGCTTCTGAATATCCAGGA 59.774 41.667 0.00 0.00 34.99 3.86
4629 5177 4.334759 CACACTTGCTTCTGAATATCCAGG 59.665 45.833 0.00 0.00 34.99 4.45
4630 5178 4.334759 CCACACTTGCTTCTGAATATCCAG 59.665 45.833 0.00 0.00 35.55 3.86
4631 5179 4.264253 CCACACTTGCTTCTGAATATCCA 58.736 43.478 0.00 0.00 0.00 3.41
4632 5180 3.065925 GCCACACTTGCTTCTGAATATCC 59.934 47.826 0.00 0.00 0.00 2.59
4633 5181 3.065925 GGCCACACTTGCTTCTGAATATC 59.934 47.826 0.00 0.00 0.00 1.63
4634 5182 3.019564 GGCCACACTTGCTTCTGAATAT 58.980 45.455 0.00 0.00 0.00 1.28
4635 5183 2.224744 TGGCCACACTTGCTTCTGAATA 60.225 45.455 0.00 0.00 0.00 1.75
4636 5184 1.251251 GGCCACACTTGCTTCTGAAT 58.749 50.000 0.00 0.00 0.00 2.57
4637 5185 0.106769 TGGCCACACTTGCTTCTGAA 60.107 50.000 0.00 0.00 0.00 3.02
4638 5186 0.535780 CTGGCCACACTTGCTTCTGA 60.536 55.000 0.00 0.00 0.00 3.27
4639 5187 0.535780 TCTGGCCACACTTGCTTCTG 60.536 55.000 0.00 0.00 0.00 3.02
4640 5188 0.403271 ATCTGGCCACACTTGCTTCT 59.597 50.000 0.00 0.00 0.00 2.85
4641 5189 0.524862 CATCTGGCCACACTTGCTTC 59.475 55.000 0.00 0.00 0.00 3.86
4642 5190 0.178981 ACATCTGGCCACACTTGCTT 60.179 50.000 0.00 0.00 0.00 3.91
4643 5191 0.892358 CACATCTGGCCACACTTGCT 60.892 55.000 0.00 0.00 0.00 3.91
4644 5192 0.890542 TCACATCTGGCCACACTTGC 60.891 55.000 0.00 0.00 0.00 4.01
4645 5193 1.830279 ATCACATCTGGCCACACTTG 58.170 50.000 0.00 0.00 0.00 3.16
4646 5194 2.592102 AATCACATCTGGCCACACTT 57.408 45.000 0.00 0.00 0.00 3.16
4647 5195 2.592102 AAATCACATCTGGCCACACT 57.408 45.000 0.00 0.00 0.00 3.55
4648 5196 2.821969 AGAAAATCACATCTGGCCACAC 59.178 45.455 0.00 0.00 0.00 3.82
4649 5197 2.821378 CAGAAAATCACATCTGGCCACA 59.179 45.455 0.00 0.00 39.48 4.17
4650 5198 2.821969 ACAGAAAATCACATCTGGCCAC 59.178 45.455 0.00 0.00 45.80 5.01
4651 5199 3.084039 GACAGAAAATCACATCTGGCCA 58.916 45.455 4.71 4.71 44.38 5.36
4652 5200 3.772060 GACAGAAAATCACATCTGGCC 57.228 47.619 0.00 0.00 44.38 5.36
4654 5202 6.373495 TGATTCTGACAGAAAATCACATCTGG 59.627 38.462 21.29 0.00 45.80 3.86
4655 5203 7.373778 TGATTCTGACAGAAAATCACATCTG 57.626 36.000 21.29 1.46 46.69 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.