Multiple sequence alignment - TraesCS7D01G349600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G349600 chr7D 100.000 3613 0 0 1 3613 449461701 449458089 0.000000e+00 6673
1 TraesCS7D01G349600 chr7A 89.410 2559 159 46 931 3442 546631592 546634085 0.000000e+00 3121
2 TraesCS7D01G349600 chr7A 92.857 168 11 1 3440 3607 546634200 546634366 3.600000e-60 243
3 TraesCS7D01G349600 chr7B 97.226 1442 34 4 1460 2901 467445790 467444355 0.000000e+00 2436
4 TraesCS7D01G349600 chr7B 96.667 720 20 2 2892 3607 467442180 467441461 0.000000e+00 1194
5 TraesCS7D01G349600 chr7B 91.969 772 31 16 564 1326 467446669 467445920 0.000000e+00 1053
6 TraesCS7D01G349600 chr7B 95.413 109 5 0 241 349 467447053 467446945 1.330000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G349600 chr7D 449458089 449461701 3612 True 6673.00 6673 100.00000 1 3613 1 chr7D.!!$R1 3612
1 TraesCS7D01G349600 chr7A 546631592 546634366 2774 False 1682.00 3121 91.13350 931 3607 2 chr7A.!!$F1 2676
2 TraesCS7D01G349600 chr7B 467441461 467447053 5592 True 1214.25 2436 95.31875 241 3607 4 chr7B.!!$R1 3366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.030638 CAAGGAAGTGGTGCCAAACG 59.969 55.000 0.00 0.0 0.00 3.60 F
851 933 0.179067 CCAAGGGCCGAAACGCTATA 60.179 55.000 0.00 0.0 31.71 1.31 F
1779 1912 1.000396 GGATTTGGTGCCAGGCTCT 60.000 57.895 14.15 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 2368 0.107459 GGAAGGTCCATCTGTGGCTC 60.107 60.000 0.00 0.0 45.63 4.70 R
2293 2427 1.656441 CAGCTGCGCCTTTTTCAGT 59.344 52.632 4.18 0.0 0.00 3.41 R
2939 5259 0.527113 TGTGAAATGCCATGCTTCCG 59.473 50.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.799371 GCTAGCACCGCGTAGTCT 59.201 61.111 10.63 0.00 0.00 3.24
18 19 1.586564 GCTAGCACCGCGTAGTCTG 60.587 63.158 10.63 0.00 0.00 3.51
19 20 1.989966 GCTAGCACCGCGTAGTCTGA 61.990 60.000 10.63 0.00 0.00 3.27
20 21 0.248134 CTAGCACCGCGTAGTCTGAC 60.248 60.000 4.92 0.00 0.00 3.51
21 22 1.974249 TAGCACCGCGTAGTCTGACG 61.974 60.000 4.92 0.00 45.70 4.35
22 23 2.865308 CACCGCGTAGTCTGACGA 59.135 61.111 4.92 0.00 45.82 4.20
23 24 1.428219 CACCGCGTAGTCTGACGAT 59.572 57.895 4.92 0.00 45.82 3.73
24 25 0.179171 CACCGCGTAGTCTGACGATT 60.179 55.000 4.92 0.00 45.82 3.34
25 26 1.063027 CACCGCGTAGTCTGACGATTA 59.937 52.381 4.92 0.00 45.82 1.75
26 27 1.329906 ACCGCGTAGTCTGACGATTAG 59.670 52.381 4.92 0.00 45.82 1.73
27 28 1.333881 CCGCGTAGTCTGACGATTAGG 60.334 57.143 4.92 1.60 45.82 2.69
28 29 1.596260 CGCGTAGTCTGACGATTAGGA 59.404 52.381 0.00 0.00 45.82 2.94
29 30 2.348685 CGCGTAGTCTGACGATTAGGAG 60.349 54.545 0.00 0.00 45.82 3.69
30 31 2.613133 GCGTAGTCTGACGATTAGGAGT 59.387 50.000 1.52 0.00 45.82 3.85
31 32 3.065095 GCGTAGTCTGACGATTAGGAGTT 59.935 47.826 1.52 0.00 45.82 3.01
32 33 4.438472 GCGTAGTCTGACGATTAGGAGTTT 60.438 45.833 1.52 0.00 45.82 2.66
33 34 5.264712 CGTAGTCTGACGATTAGGAGTTTC 58.735 45.833 1.52 0.00 45.82 2.78
34 35 4.722361 AGTCTGACGATTAGGAGTTTCC 57.278 45.455 1.52 0.00 36.58 3.13
35 36 4.087182 AGTCTGACGATTAGGAGTTTCCA 58.913 43.478 1.52 0.00 39.61 3.53
36 37 4.712337 AGTCTGACGATTAGGAGTTTCCAT 59.288 41.667 1.52 0.00 39.61 3.41
37 38 5.044558 GTCTGACGATTAGGAGTTTCCATC 58.955 45.833 0.00 0.00 39.61 3.51
38 39 4.099573 TCTGACGATTAGGAGTTTCCATCC 59.900 45.833 0.00 0.00 39.61 3.51
40 41 4.099573 TGACGATTAGGAGTTTCCATCCTC 59.900 45.833 0.00 0.00 44.05 3.71
41 42 4.290942 ACGATTAGGAGTTTCCATCCTCT 58.709 43.478 0.00 0.00 44.05 3.69
42 43 4.342665 ACGATTAGGAGTTTCCATCCTCTC 59.657 45.833 0.00 0.00 44.05 3.20
43 44 4.262249 CGATTAGGAGTTTCCATCCTCTCC 60.262 50.000 0.00 0.00 44.05 3.71
44 45 1.886422 AGGAGTTTCCATCCTCTCCC 58.114 55.000 6.46 0.00 44.05 4.30
45 46 1.367848 AGGAGTTTCCATCCTCTCCCT 59.632 52.381 6.46 0.00 44.05 4.20
46 47 2.200955 GGAGTTTCCATCCTCTCCCTT 58.799 52.381 0.00 0.00 40.14 3.95
47 48 2.578480 GGAGTTTCCATCCTCTCCCTTT 59.422 50.000 0.00 0.00 40.14 3.11
48 49 3.615155 GAGTTTCCATCCTCTCCCTTTG 58.385 50.000 0.00 0.00 0.00 2.77
49 50 2.095461 GTTTCCATCCTCTCCCTTTGC 58.905 52.381 0.00 0.00 0.00 3.68
50 51 1.371467 TTCCATCCTCTCCCTTTGCA 58.629 50.000 0.00 0.00 0.00 4.08
51 52 0.620556 TCCATCCTCTCCCTTTGCAC 59.379 55.000 0.00 0.00 0.00 4.57
52 53 0.329261 CCATCCTCTCCCTTTGCACA 59.671 55.000 0.00 0.00 0.00 4.57
53 54 1.064166 CCATCCTCTCCCTTTGCACAT 60.064 52.381 0.00 0.00 0.00 3.21
54 55 2.295885 CATCCTCTCCCTTTGCACATC 58.704 52.381 0.00 0.00 0.00 3.06
55 56 1.661463 TCCTCTCCCTTTGCACATCT 58.339 50.000 0.00 0.00 0.00 2.90
56 57 2.832838 TCCTCTCCCTTTGCACATCTA 58.167 47.619 0.00 0.00 0.00 1.98
57 58 3.181329 TCCTCTCCCTTTGCACATCTAA 58.819 45.455 0.00 0.00 0.00 2.10
58 59 3.782523 TCCTCTCCCTTTGCACATCTAAT 59.217 43.478 0.00 0.00 0.00 1.73
59 60 4.968719 TCCTCTCCCTTTGCACATCTAATA 59.031 41.667 0.00 0.00 0.00 0.98
60 61 5.428457 TCCTCTCCCTTTGCACATCTAATAA 59.572 40.000 0.00 0.00 0.00 1.40
61 62 5.762218 CCTCTCCCTTTGCACATCTAATAAG 59.238 44.000 0.00 0.00 0.00 1.73
62 63 6.408548 CCTCTCCCTTTGCACATCTAATAAGA 60.409 42.308 0.00 0.00 35.80 2.10
63 64 6.586344 TCTCCCTTTGCACATCTAATAAGAG 58.414 40.000 0.00 0.00 34.49 2.85
64 65 5.126067 TCCCTTTGCACATCTAATAAGAGC 58.874 41.667 0.00 0.00 34.49 4.09
65 66 5.104360 TCCCTTTGCACATCTAATAAGAGCT 60.104 40.000 0.00 0.00 34.49 4.09
66 67 5.591877 CCCTTTGCACATCTAATAAGAGCTT 59.408 40.000 0.00 0.00 34.49 3.74
67 68 6.459298 CCCTTTGCACATCTAATAAGAGCTTG 60.459 42.308 0.00 0.00 34.49 4.01
68 69 6.094603 CCTTTGCACATCTAATAAGAGCTTGT 59.905 38.462 0.00 0.00 34.49 3.16
69 70 6.426980 TTGCACATCTAATAAGAGCTTGTG 57.573 37.500 5.26 5.26 40.72 3.33
70 71 5.733676 TGCACATCTAATAAGAGCTTGTGA 58.266 37.500 12.36 0.00 40.42 3.58
71 72 6.172630 TGCACATCTAATAAGAGCTTGTGAA 58.827 36.000 12.36 0.29 40.42 3.18
72 73 6.092670 TGCACATCTAATAAGAGCTTGTGAAC 59.907 38.462 12.36 0.00 40.42 3.18
73 74 6.314896 GCACATCTAATAAGAGCTTGTGAACT 59.685 38.462 12.36 0.00 40.42 3.01
74 75 7.492669 GCACATCTAATAAGAGCTTGTGAACTA 59.507 37.037 12.36 0.00 40.42 2.24
75 76 9.029243 CACATCTAATAAGAGCTTGTGAACTAG 57.971 37.037 3.80 0.00 40.42 2.57
76 77 8.754080 ACATCTAATAAGAGCTTGTGAACTAGT 58.246 33.333 0.00 0.00 34.49 2.57
79 80 9.239551 TCTAATAAGAGCTTGTGAACTAGTACA 57.760 33.333 0.00 0.00 0.00 2.90
81 82 8.934507 AATAAGAGCTTGTGAACTAGTACATC 57.065 34.615 0.00 0.00 0.00 3.06
82 83 6.597832 AAGAGCTTGTGAACTAGTACATCT 57.402 37.500 0.00 0.00 0.00 2.90
83 84 6.202516 AGAGCTTGTGAACTAGTACATCTC 57.797 41.667 14.55 14.55 32.09 2.75
84 85 5.949354 AGAGCTTGTGAACTAGTACATCTCT 59.051 40.000 17.07 17.07 34.85 3.10
85 86 5.960113 AGCTTGTGAACTAGTACATCTCTG 58.040 41.667 0.00 0.00 0.00 3.35
86 87 5.712446 AGCTTGTGAACTAGTACATCTCTGA 59.288 40.000 0.00 0.00 0.00 3.27
87 88 6.033341 GCTTGTGAACTAGTACATCTCTGAG 58.967 44.000 0.00 0.00 0.00 3.35
88 89 6.127869 GCTTGTGAACTAGTACATCTCTGAGA 60.128 42.308 10.23 10.23 0.00 3.27
89 90 6.745159 TGTGAACTAGTACATCTCTGAGAC 57.255 41.667 10.00 0.00 0.00 3.36
90 91 6.238648 TGTGAACTAGTACATCTCTGAGACA 58.761 40.000 10.00 0.00 0.00 3.41
91 92 6.149640 TGTGAACTAGTACATCTCTGAGACAC 59.850 42.308 10.00 9.66 0.00 3.67
92 93 6.373216 GTGAACTAGTACATCTCTGAGACACT 59.627 42.308 10.00 14.80 0.00 3.55
93 94 6.943146 TGAACTAGTACATCTCTGAGACACTT 59.057 38.462 18.10 6.19 0.00 3.16
94 95 6.995511 ACTAGTACATCTCTGAGACACTTC 57.004 41.667 18.10 7.00 0.00 3.01
95 96 6.717289 ACTAGTACATCTCTGAGACACTTCT 58.283 40.000 18.10 12.21 33.37 2.85
96 97 7.172342 ACTAGTACATCTCTGAGACACTTCTT 58.828 38.462 18.10 0.00 29.47 2.52
97 98 6.266168 AGTACATCTCTGAGACACTTCTTG 57.734 41.667 10.00 5.13 29.47 3.02
98 99 3.924144 ACATCTCTGAGACACTTCTTGC 58.076 45.455 10.00 0.00 29.47 4.01
99 100 3.323115 ACATCTCTGAGACACTTCTTGCA 59.677 43.478 10.00 0.00 29.47 4.08
100 101 4.202295 ACATCTCTGAGACACTTCTTGCAA 60.202 41.667 10.00 0.00 29.47 4.08
101 102 4.406648 TCTCTGAGACACTTCTTGCAAA 57.593 40.909 2.58 0.00 29.47 3.68
102 103 4.122776 TCTCTGAGACACTTCTTGCAAAC 58.877 43.478 2.58 0.00 29.47 2.93
103 104 3.206150 TCTGAGACACTTCTTGCAAACC 58.794 45.455 0.00 0.00 29.47 3.27
104 105 2.945008 CTGAGACACTTCTTGCAAACCA 59.055 45.455 0.00 0.00 29.47 3.67
105 106 3.554934 TGAGACACTTCTTGCAAACCAT 58.445 40.909 0.00 0.00 29.47 3.55
106 107 3.565482 TGAGACACTTCTTGCAAACCATC 59.435 43.478 0.00 0.00 29.47 3.51
107 108 3.554934 AGACACTTCTTGCAAACCATCA 58.445 40.909 0.00 0.00 0.00 3.07
108 109 3.316308 AGACACTTCTTGCAAACCATCAC 59.684 43.478 0.00 0.00 0.00 3.06
109 110 2.362077 ACACTTCTTGCAAACCATCACC 59.638 45.455 0.00 0.00 0.00 4.02
110 111 2.361757 CACTTCTTGCAAACCATCACCA 59.638 45.455 0.00 0.00 0.00 4.17
111 112 3.030291 ACTTCTTGCAAACCATCACCAA 58.970 40.909 0.00 0.00 0.00 3.67
112 113 3.181476 ACTTCTTGCAAACCATCACCAAC 60.181 43.478 0.00 0.00 0.00 3.77
113 114 2.382882 TCTTGCAAACCATCACCAACA 58.617 42.857 0.00 0.00 0.00 3.33
114 115 2.100584 TCTTGCAAACCATCACCAACAC 59.899 45.455 0.00 0.00 0.00 3.32
115 116 0.749649 TGCAAACCATCACCAACACC 59.250 50.000 0.00 0.00 0.00 4.16
116 117 0.749649 GCAAACCATCACCAACACCA 59.250 50.000 0.00 0.00 0.00 4.17
117 118 1.269726 GCAAACCATCACCAACACCAG 60.270 52.381 0.00 0.00 0.00 4.00
118 119 2.305928 CAAACCATCACCAACACCAGA 58.694 47.619 0.00 0.00 0.00 3.86
119 120 1.981256 AACCATCACCAACACCAGAC 58.019 50.000 0.00 0.00 0.00 3.51
120 121 0.843309 ACCATCACCAACACCAGACA 59.157 50.000 0.00 0.00 0.00 3.41
121 122 1.425066 ACCATCACCAACACCAGACAT 59.575 47.619 0.00 0.00 0.00 3.06
122 123 1.814394 CCATCACCAACACCAGACATG 59.186 52.381 0.00 0.00 0.00 3.21
123 124 2.507484 CATCACCAACACCAGACATGT 58.493 47.619 0.00 0.00 0.00 3.21
124 125 3.558958 CCATCACCAACACCAGACATGTA 60.559 47.826 0.00 0.00 0.00 2.29
125 126 3.401033 TCACCAACACCAGACATGTAG 57.599 47.619 0.00 0.00 0.00 2.74
126 127 1.806542 CACCAACACCAGACATGTAGC 59.193 52.381 0.00 0.00 0.00 3.58
127 128 1.419762 ACCAACACCAGACATGTAGCA 59.580 47.619 0.00 0.00 0.00 3.49
128 129 2.040278 ACCAACACCAGACATGTAGCAT 59.960 45.455 0.00 0.00 0.00 3.79
129 130 2.421073 CCAACACCAGACATGTAGCATG 59.579 50.000 0.00 7.48 0.00 4.06
130 131 3.076621 CAACACCAGACATGTAGCATGT 58.923 45.455 13.74 13.74 34.52 3.21
131 132 2.703416 ACACCAGACATGTAGCATGTG 58.297 47.619 17.98 5.20 31.52 3.21
132 133 2.011947 CACCAGACATGTAGCATGTGG 58.988 52.381 17.98 15.55 31.52 4.17
133 134 1.908619 ACCAGACATGTAGCATGTGGA 59.091 47.619 17.98 0.00 31.52 4.02
134 135 2.283298 CCAGACATGTAGCATGTGGAC 58.717 52.381 17.98 5.60 31.52 4.02
135 136 2.355007 CCAGACATGTAGCATGTGGACA 60.355 50.000 17.98 0.00 31.52 4.02
136 137 2.934553 CAGACATGTAGCATGTGGACAG 59.065 50.000 17.98 0.00 31.52 3.51
137 138 1.667724 GACATGTAGCATGTGGACAGC 59.332 52.381 17.98 0.96 31.52 4.40
138 139 1.019673 CATGTAGCATGTGGACAGCC 58.980 55.000 0.00 0.00 0.00 4.85
139 140 0.620030 ATGTAGCATGTGGACAGCCA 59.380 50.000 0.00 0.00 43.47 4.75
154 155 3.290776 GCCAACCGCTACTAGATGG 57.709 57.895 0.00 0.00 0.00 3.51
155 156 0.750850 GCCAACCGCTACTAGATGGA 59.249 55.000 0.00 0.00 0.00 3.41
156 157 1.538419 GCCAACCGCTACTAGATGGAC 60.538 57.143 0.00 0.00 0.00 4.02
157 158 1.068741 CCAACCGCTACTAGATGGACC 59.931 57.143 0.00 0.00 0.00 4.46
158 159 1.068741 CAACCGCTACTAGATGGACCC 59.931 57.143 0.00 0.00 0.00 4.46
159 160 0.556747 ACCGCTACTAGATGGACCCT 59.443 55.000 0.00 0.00 0.00 4.34
160 161 1.063114 ACCGCTACTAGATGGACCCTT 60.063 52.381 0.00 0.00 0.00 3.95
161 162 1.614413 CCGCTACTAGATGGACCCTTC 59.386 57.143 0.00 0.00 0.00 3.46
162 163 1.614413 CGCTACTAGATGGACCCTTCC 59.386 57.143 0.00 0.00 43.19 3.46
182 183 2.601562 CCTATAGGTTTCGCCACGC 58.398 57.895 10.96 0.00 40.61 5.34
183 184 0.104304 CCTATAGGTTTCGCCACGCT 59.896 55.000 10.96 0.00 40.61 5.07
184 185 1.209128 CTATAGGTTTCGCCACGCTG 58.791 55.000 0.00 0.00 40.61 5.18
185 186 0.818938 TATAGGTTTCGCCACGCTGA 59.181 50.000 0.00 0.00 40.61 4.26
186 187 0.178068 ATAGGTTTCGCCACGCTGAT 59.822 50.000 0.00 0.00 40.61 2.90
187 188 0.739462 TAGGTTTCGCCACGCTGATG 60.739 55.000 0.00 0.00 40.61 3.07
188 189 2.480555 GTTTCGCCACGCTGATGG 59.519 61.111 0.00 0.00 43.26 3.51
189 190 2.031919 TTTCGCCACGCTGATGGT 59.968 55.556 1.09 0.00 42.28 3.55
190 191 1.599518 TTTCGCCACGCTGATGGTT 60.600 52.632 1.09 0.00 42.28 3.67
191 192 1.851021 TTTCGCCACGCTGATGGTTG 61.851 55.000 1.09 0.00 42.28 3.77
192 193 2.723586 TTCGCCACGCTGATGGTTGA 62.724 55.000 1.09 0.00 42.28 3.18
193 194 2.108514 CGCCACGCTGATGGTTGAT 61.109 57.895 1.09 0.00 42.28 2.57
194 195 1.430632 GCCACGCTGATGGTTGATG 59.569 57.895 1.09 0.00 42.28 3.07
195 196 1.996786 GCCACGCTGATGGTTGATGG 61.997 60.000 1.09 0.00 42.28 3.51
196 197 1.378882 CCACGCTGATGGTTGATGGG 61.379 60.000 0.00 0.00 34.77 4.00
197 198 1.077501 ACGCTGATGGTTGATGGGG 60.078 57.895 0.00 0.00 0.00 4.96
198 199 2.484062 CGCTGATGGTTGATGGGGC 61.484 63.158 0.00 0.00 0.00 5.80
199 200 1.380246 GCTGATGGTTGATGGGGCA 60.380 57.895 0.00 0.00 0.00 5.36
200 201 1.389609 GCTGATGGTTGATGGGGCAG 61.390 60.000 0.00 0.00 0.00 4.85
201 202 0.033796 CTGATGGTTGATGGGGCAGT 60.034 55.000 0.00 0.00 0.00 4.40
202 203 0.323633 TGATGGTTGATGGGGCAGTG 60.324 55.000 0.00 0.00 0.00 3.66
203 204 0.323725 GATGGTTGATGGGGCAGTGT 60.324 55.000 0.00 0.00 0.00 3.55
204 205 0.323725 ATGGTTGATGGGGCAGTGTC 60.324 55.000 0.00 0.00 0.00 3.67
205 206 2.040544 GGTTGATGGGGCAGTGTCG 61.041 63.158 0.00 0.00 0.00 4.35
206 207 1.003839 GTTGATGGGGCAGTGTCGA 60.004 57.895 0.00 0.00 0.00 4.20
207 208 0.605319 GTTGATGGGGCAGTGTCGAA 60.605 55.000 0.00 0.00 0.00 3.71
208 209 0.321564 TTGATGGGGCAGTGTCGAAG 60.322 55.000 0.00 0.00 0.00 3.79
209 210 1.296715 GATGGGGCAGTGTCGAAGT 59.703 57.895 0.00 0.00 0.00 3.01
210 211 0.741221 GATGGGGCAGTGTCGAAGTC 60.741 60.000 0.00 0.00 0.00 3.01
211 212 1.194781 ATGGGGCAGTGTCGAAGTCT 61.195 55.000 0.00 0.00 0.00 3.24
212 213 1.079750 GGGGCAGTGTCGAAGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
213 214 1.444553 GGGCAGTGTCGAAGTCTCG 60.445 63.158 0.00 0.00 46.87 4.04
225 226 2.052157 GAAGTCTCGAGTGTTGGTTCG 58.948 52.381 13.13 0.00 38.13 3.95
226 227 0.314302 AGTCTCGAGTGTTGGTTCGG 59.686 55.000 13.13 0.00 37.42 4.30
227 228 0.031721 GTCTCGAGTGTTGGTTCGGT 59.968 55.000 13.13 0.00 37.42 4.69
228 229 1.267806 GTCTCGAGTGTTGGTTCGGTA 59.732 52.381 13.13 0.00 37.42 4.02
229 230 1.955778 TCTCGAGTGTTGGTTCGGTAA 59.044 47.619 13.13 0.00 37.42 2.85
230 231 2.030540 TCTCGAGTGTTGGTTCGGTAAG 60.031 50.000 13.13 0.00 37.42 2.34
231 232 1.955778 TCGAGTGTTGGTTCGGTAAGA 59.044 47.619 0.00 0.00 37.42 2.10
232 233 2.030540 TCGAGTGTTGGTTCGGTAAGAG 60.031 50.000 0.00 0.00 37.42 2.85
233 234 2.067013 GAGTGTTGGTTCGGTAAGAGC 58.933 52.381 0.00 0.00 0.00 4.09
234 235 1.414919 AGTGTTGGTTCGGTAAGAGCA 59.585 47.619 0.00 0.00 0.00 4.26
235 236 2.158871 AGTGTTGGTTCGGTAAGAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
236 237 2.812011 GTGTTGGTTCGGTAAGAGCAAT 59.188 45.455 0.00 0.00 35.93 3.56
237 238 3.998341 GTGTTGGTTCGGTAAGAGCAATA 59.002 43.478 0.00 0.00 35.93 1.90
238 239 4.634443 GTGTTGGTTCGGTAAGAGCAATAT 59.366 41.667 0.00 0.00 35.93 1.28
239 240 4.634004 TGTTGGTTCGGTAAGAGCAATATG 59.366 41.667 0.00 0.00 35.93 1.78
298 299 3.916359 TGGTCTTTGTTGGTGTCACTA 57.084 42.857 2.35 0.00 0.00 2.74
346 347 3.741476 GCAAGGCGTTGGCTCTGG 61.741 66.667 19.88 0.00 37.50 3.86
347 348 2.281761 CAAGGCGTTGGCTCTGGT 60.282 61.111 11.31 0.00 37.50 4.00
348 349 2.281761 AAGGCGTTGGCTCTGGTG 60.282 61.111 0.00 0.00 37.50 4.17
349 350 2.818169 AAGGCGTTGGCTCTGGTGA 61.818 57.895 0.00 0.00 37.50 4.02
350 351 2.045926 GGCGTTGGCTCTGGTGAT 60.046 61.111 0.00 0.00 39.81 3.06
351 352 2.401766 GGCGTTGGCTCTGGTGATG 61.402 63.158 0.00 0.00 39.81 3.07
352 353 2.401766 GCGTTGGCTCTGGTGATGG 61.402 63.158 0.00 0.00 35.83 3.51
353 354 1.296392 CGTTGGCTCTGGTGATGGA 59.704 57.895 0.00 0.00 0.00 3.41
354 355 0.321564 CGTTGGCTCTGGTGATGGAA 60.322 55.000 0.00 0.00 0.00 3.53
365 366 2.036992 TGGTGATGGAATTGTTGCCAAC 59.963 45.455 0.00 0.00 37.78 3.77
375 376 6.321181 TGGAATTGTTGCCAACTAGGATTATC 59.679 38.462 9.30 2.38 41.22 1.75
377 378 7.014615 GGAATTGTTGCCAACTAGGATTATCAT 59.985 37.037 9.30 0.00 41.22 2.45
378 379 7.902920 ATTGTTGCCAACTAGGATTATCATT 57.097 32.000 9.30 0.00 41.22 2.57
380 381 5.593909 TGTTGCCAACTAGGATTATCATTGG 59.406 40.000 9.30 10.47 41.22 3.16
384 385 5.874093 CCAACTAGGATTATCATTGGCTCT 58.126 41.667 0.00 0.00 41.22 4.09
385 386 5.704515 CCAACTAGGATTATCATTGGCTCTG 59.295 44.000 0.00 0.00 41.22 3.35
387 388 6.107901 ACTAGGATTATCATTGGCTCTGAC 57.892 41.667 0.00 0.00 0.00 3.51
388 389 5.843421 ACTAGGATTATCATTGGCTCTGACT 59.157 40.000 0.00 0.00 0.00 3.41
389 390 4.970711 AGGATTATCATTGGCTCTGACTG 58.029 43.478 0.00 0.00 0.00 3.51
391 392 3.632643 TTATCATTGGCTCTGACTGCA 57.367 42.857 0.00 0.00 0.00 4.41
392 393 2.502142 ATCATTGGCTCTGACTGCAA 57.498 45.000 0.00 0.00 0.00 4.08
393 394 1.817357 TCATTGGCTCTGACTGCAAG 58.183 50.000 0.00 0.00 42.29 4.01
394 395 0.809385 CATTGGCTCTGACTGCAAGG 59.191 55.000 0.00 0.00 39.30 3.61
395 396 0.694771 ATTGGCTCTGACTGCAAGGA 59.305 50.000 0.00 0.00 39.30 3.36
396 397 0.473755 TTGGCTCTGACTGCAAGGAA 59.526 50.000 0.00 0.00 39.30 3.36
398 399 0.036022 GGCTCTGACTGCAAGGAAGT 59.964 55.000 0.00 0.00 39.30 3.01
399 400 1.155042 GCTCTGACTGCAAGGAAGTG 58.845 55.000 0.00 0.00 39.30 3.16
400 401 1.805869 CTCTGACTGCAAGGAAGTGG 58.194 55.000 0.00 0.00 39.30 4.00
401 402 1.071385 CTCTGACTGCAAGGAAGTGGT 59.929 52.381 0.00 0.00 39.30 4.16
402 403 1.202687 TCTGACTGCAAGGAAGTGGTG 60.203 52.381 0.00 0.00 39.30 4.17
403 404 0.819259 TGACTGCAAGGAAGTGGTGC 60.819 55.000 0.00 0.00 39.30 5.01
404 405 1.518903 GACTGCAAGGAAGTGGTGCC 61.519 60.000 0.00 0.00 39.30 5.01
405 406 1.529010 CTGCAAGGAAGTGGTGCCA 60.529 57.895 0.00 0.00 37.48 4.92
406 407 1.076412 TGCAAGGAAGTGGTGCCAA 60.076 52.632 0.00 0.00 37.48 4.52
407 408 0.685785 TGCAAGGAAGTGGTGCCAAA 60.686 50.000 0.00 0.00 37.48 3.28
409 410 0.030638 CAAGGAAGTGGTGCCAAACG 59.969 55.000 0.00 0.00 0.00 3.60
411 412 0.818040 AGGAAGTGGTGCCAAACGTC 60.818 55.000 0.00 0.00 0.00 4.34
412 413 1.098712 GGAAGTGGTGCCAAACGTCA 61.099 55.000 0.00 0.00 0.00 4.35
414 415 1.133407 GAAGTGGTGCCAAACGTCAAA 59.867 47.619 0.00 0.00 0.00 2.69
415 416 0.738389 AGTGGTGCCAAACGTCAAAG 59.262 50.000 0.00 0.00 0.00 2.77
416 417 0.736053 GTGGTGCCAAACGTCAAAGA 59.264 50.000 0.00 0.00 0.00 2.52
417 418 1.133407 GTGGTGCCAAACGTCAAAGAA 59.867 47.619 0.00 0.00 0.00 2.52
420 421 0.383949 TGCCAAACGTCAAAGAAGGC 59.616 50.000 0.00 0.00 40.93 4.35
422 423 1.202359 GCCAAACGTCAAAGAAGGCAA 60.202 47.619 0.00 0.00 40.29 4.52
424 425 3.052036 CCAAACGTCAAAGAAGGCAATG 58.948 45.455 0.00 0.00 0.00 2.82
425 426 3.490761 CCAAACGTCAAAGAAGGCAATGT 60.491 43.478 0.00 0.00 0.00 2.71
427 428 4.749245 AACGTCAAAGAAGGCAATGTAG 57.251 40.909 0.00 0.00 0.00 2.74
428 429 3.074412 ACGTCAAAGAAGGCAATGTAGG 58.926 45.455 0.00 0.00 0.00 3.18
429 430 2.420022 CGTCAAAGAAGGCAATGTAGGG 59.580 50.000 0.00 0.00 0.00 3.53
432 472 4.096984 GTCAAAGAAGGCAATGTAGGGATG 59.903 45.833 0.00 0.00 0.00 3.51
436 476 4.467769 AGAAGGCAATGTAGGGATGAATG 58.532 43.478 0.00 0.00 0.00 2.67
437 477 3.234234 AGGCAATGTAGGGATGAATGG 57.766 47.619 0.00 0.00 0.00 3.16
438 478 1.615392 GGCAATGTAGGGATGAATGGC 59.385 52.381 0.00 0.00 0.00 4.40
439 479 2.590821 GCAATGTAGGGATGAATGGCT 58.409 47.619 0.00 0.00 0.00 4.75
441 481 4.338879 GCAATGTAGGGATGAATGGCTAT 58.661 43.478 0.00 0.00 0.00 2.97
448 488 8.622572 TGTAGGGATGAATGGCTATATAATGA 57.377 34.615 0.00 0.00 0.00 2.57
451 491 8.578593 AGGGATGAATGGCTATATAATGAGAT 57.421 34.615 0.00 0.00 0.00 2.75
454 494 9.842775 GGATGAATGGCTATATAATGAGATCAA 57.157 33.333 0.00 0.00 0.00 2.57
517 557 2.969628 AGGTAGAGCCTCGAATGTTG 57.030 50.000 0.00 0.00 46.96 3.33
518 558 2.457598 AGGTAGAGCCTCGAATGTTGA 58.542 47.619 0.00 0.00 46.96 3.18
519 559 2.428890 AGGTAGAGCCTCGAATGTTGAG 59.571 50.000 0.00 0.00 46.96 3.02
524 564 3.231734 CCTCGAATGTTGAGGCACA 57.768 52.632 0.00 0.00 45.99 4.57
525 565 1.742761 CCTCGAATGTTGAGGCACAT 58.257 50.000 0.00 0.00 45.99 3.21
527 567 3.270027 CCTCGAATGTTGAGGCACATTA 58.730 45.455 2.08 0.00 45.55 1.90
528 568 3.063997 CCTCGAATGTTGAGGCACATTAC 59.936 47.826 2.08 0.00 45.55 1.89
529 569 3.006940 TCGAATGTTGAGGCACATTACC 58.993 45.455 2.08 0.00 45.55 2.85
530 570 3.009723 CGAATGTTGAGGCACATTACCT 58.990 45.455 2.08 0.00 45.55 3.08
531 571 3.440173 CGAATGTTGAGGCACATTACCTT 59.560 43.478 2.08 0.00 45.55 3.50
532 572 4.082787 CGAATGTTGAGGCACATTACCTTT 60.083 41.667 2.08 0.00 45.55 3.11
533 573 5.391312 AATGTTGAGGCACATTACCTTTC 57.609 39.130 0.27 0.00 44.08 2.62
534 574 4.098914 TGTTGAGGCACATTACCTTTCT 57.901 40.909 0.00 0.00 37.77 2.52
535 575 5.235850 TGTTGAGGCACATTACCTTTCTA 57.764 39.130 0.00 0.00 37.77 2.10
536 576 5.626142 TGTTGAGGCACATTACCTTTCTAA 58.374 37.500 0.00 0.00 37.77 2.10
537 577 5.705441 TGTTGAGGCACATTACCTTTCTAAG 59.295 40.000 0.00 0.00 37.77 2.18
538 578 5.499004 TGAGGCACATTACCTTTCTAAGT 57.501 39.130 0.00 0.00 37.77 2.24
539 579 6.614694 TGAGGCACATTACCTTTCTAAGTA 57.385 37.500 0.00 0.00 37.77 2.24
541 581 7.047891 TGAGGCACATTACCTTTCTAAGTATG 58.952 38.462 0.00 0.00 37.77 2.39
542 582 5.823045 AGGCACATTACCTTTCTAAGTATGC 59.177 40.000 0.00 0.00 31.87 3.14
543 583 5.588648 GGCACATTACCTTTCTAAGTATGCA 59.411 40.000 0.00 0.00 0.00 3.96
544 584 6.458342 GGCACATTACCTTTCTAAGTATGCAC 60.458 42.308 0.00 0.00 0.00 4.57
547 587 9.378551 CACATTACCTTTCTAAGTATGCACTTA 57.621 33.333 0.00 0.00 43.33 2.24
548 588 9.379791 ACATTACCTTTCTAAGTATGCACTTAC 57.620 33.333 0.00 0.00 43.33 2.34
549 589 9.601217 CATTACCTTTCTAAGTATGCACTTACT 57.399 33.333 0.00 0.00 43.33 2.24
550 590 9.819267 ATTACCTTTCTAAGTATGCACTTACTC 57.181 33.333 0.54 0.00 43.33 2.59
558 598 6.471233 AAGTATGCACTTACTCTATCTGCA 57.529 37.500 0.54 0.00 43.33 4.41
559 599 6.083098 AGTATGCACTTACTCTATCTGCAG 57.917 41.667 7.63 7.63 40.99 4.41
561 601 3.365472 TGCACTTACTCTATCTGCAGGA 58.635 45.455 15.13 2.10 32.97 3.86
604 678 4.855340 ACCTCCGGACATTCAATGTATTT 58.145 39.130 2.04 0.00 45.03 1.40
682 760 1.846712 GCCTTGCACCTCTCCTCCTT 61.847 60.000 0.00 0.00 0.00 3.36
763 841 2.093394 GCCCTCTCCTTCTTCCACTTAC 60.093 54.545 0.00 0.00 0.00 2.34
799 877 6.503944 AGAAATCTCCTTCTCCCACTTACTA 58.496 40.000 0.00 0.00 29.31 1.82
800 878 6.609616 AGAAATCTCCTTCTCCCACTTACTAG 59.390 42.308 0.00 0.00 29.31 2.57
834 916 3.727258 AGCGCTACAATGGCCCCA 61.727 61.111 8.99 0.00 0.00 4.96
851 933 0.179067 CCAAGGGCCGAAACGCTATA 60.179 55.000 0.00 0.00 31.71 1.31
877 959 2.333926 CACGAAAGAATACGCTGGTCA 58.666 47.619 0.00 0.00 0.00 4.02
888 981 1.134877 ACGCTGGTCACTCATCATCAG 60.135 52.381 0.00 0.00 0.00 2.90
911 1004 1.272147 GGGCCTGTTTGGATTCAGACT 60.272 52.381 0.84 0.00 38.35 3.24
912 1005 2.087646 GGCCTGTTTGGATTCAGACTC 58.912 52.381 0.00 0.00 38.35 3.36
913 1006 2.553028 GGCCTGTTTGGATTCAGACTCA 60.553 50.000 0.00 0.00 38.35 3.41
914 1007 2.485814 GCCTGTTTGGATTCAGACTCAC 59.514 50.000 0.00 0.00 38.35 3.51
915 1008 3.077359 CCTGTTTGGATTCAGACTCACC 58.923 50.000 0.00 0.00 38.35 4.02
916 1009 3.244700 CCTGTTTGGATTCAGACTCACCT 60.245 47.826 0.00 0.00 38.35 4.00
917 1010 3.999663 CTGTTTGGATTCAGACTCACCTC 59.000 47.826 0.00 0.00 34.02 3.85
918 1011 3.390967 TGTTTGGATTCAGACTCACCTCA 59.609 43.478 0.00 0.00 0.00 3.86
919 1012 4.141505 TGTTTGGATTCAGACTCACCTCAA 60.142 41.667 0.00 0.00 0.00 3.02
920 1013 4.705110 TTGGATTCAGACTCACCTCAAA 57.295 40.909 0.00 0.00 0.00 2.69
921 1014 4.705110 TGGATTCAGACTCACCTCAAAA 57.295 40.909 0.00 0.00 0.00 2.44
922 1015 5.047566 TGGATTCAGACTCACCTCAAAAA 57.952 39.130 0.00 0.00 0.00 1.94
1056 1149 4.070552 GCCGCTCCAAGGTCTCGT 62.071 66.667 0.00 0.00 0.00 4.18
1261 1355 3.009143 CAGGCTTAGGTTGGGAGTAGTTT 59.991 47.826 0.00 0.00 0.00 2.66
1328 1424 9.466497 AATTGATGAGACCTTGTTTATGTATGT 57.534 29.630 0.00 0.00 0.00 2.29
1330 1426 9.952030 TTGATGAGACCTTGTTTATGTATGTAA 57.048 29.630 0.00 0.00 0.00 2.41
1331 1427 9.952030 TGATGAGACCTTGTTTATGTATGTAAA 57.048 29.630 0.00 0.00 0.00 2.01
1361 1457 3.074412 GAGGTGTGTGGATAACCTTGTG 58.926 50.000 0.00 0.00 44.42 3.33
1362 1458 2.159382 GGTGTGTGGATAACCTTGTGG 58.841 52.381 0.00 0.00 37.04 4.17
1363 1459 1.539827 GTGTGTGGATAACCTTGTGGC 59.460 52.381 0.00 0.00 36.63 5.01
1391 1518 2.631062 TGAACTGTATATACCCCCAGCG 59.369 50.000 10.38 0.00 0.00 5.18
1408 1535 3.441163 CAGCGTTGGATGATTTGAATGG 58.559 45.455 0.00 0.00 0.00 3.16
1433 1560 9.971744 GGAAATAATTTACATGACATTTGTTGC 57.028 29.630 0.00 0.00 0.00 4.17
1439 1566 2.694628 ACATGACATTTGTTGCACAGGT 59.305 40.909 0.00 0.00 0.00 4.00
1459 1586 2.041216 GTTGTGTGGGAAATAGAGGGGT 59.959 50.000 0.00 0.00 0.00 4.95
1460 1587 2.354328 TGTGTGGGAAATAGAGGGGTT 58.646 47.619 0.00 0.00 0.00 4.11
1462 1589 3.245122 TGTGTGGGAAATAGAGGGGTTTC 60.245 47.826 0.00 0.00 34.42 2.78
1569 1696 2.775960 AGCAGAGGATGACATTGATGGA 59.224 45.455 0.00 0.00 0.00 3.41
1648 1778 4.915704 AGAAGATCTGAAGAACGACGATC 58.084 43.478 0.00 0.00 0.00 3.69
1779 1912 1.000396 GGATTTGGTGCCAGGCTCT 60.000 57.895 14.15 0.00 0.00 4.09
1813 1946 5.221722 GGTAATGATGAGGTAGCAGATCCAA 60.222 44.000 0.00 0.00 0.00 3.53
1859 1992 1.382420 AGCTCCGGAGATTGGCTCT 60.382 57.895 35.69 17.26 43.43 4.09
1961 2095 4.000988 TCGGCACCATTTCTCTTACTTTC 58.999 43.478 0.00 0.00 0.00 2.62
2041 2175 6.403878 CCTTGAATTGATTTCCTTGCAGATT 58.596 36.000 0.00 0.00 33.04 2.40
2234 2368 2.154462 AGATTGAAGCCACTGAAACCG 58.846 47.619 0.00 0.00 0.00 4.44
2293 2427 1.806542 GAATGGTCTGCGCAGAAAAGA 59.193 47.619 39.63 23.54 39.48 2.52
2308 2442 2.781945 AAAGACTGAAAAAGGCGCAG 57.218 45.000 10.83 0.00 39.88 5.18
2498 2633 6.972901 TGATCAGTAGCATAGTTCAAGTTACG 59.027 38.462 0.00 0.00 0.00 3.18
2663 2798 8.475639 AGTGTTCTCTTTTAAGTCTGAACTACA 58.524 33.333 17.22 0.00 33.48 2.74
2719 2855 1.539827 GTTTCATAAGGCCAACACGCT 59.460 47.619 5.01 0.00 0.00 5.07
2939 5259 4.096984 CCTTGTAGATGAATTTCCTGGTGC 59.903 45.833 0.00 0.00 0.00 5.01
3162 5482 2.703409 CTAACGCCTGCGCATCAC 59.297 61.111 12.24 1.86 44.19 3.06
3305 5634 2.064014 GCATTTTGAGCTTTGGACTGC 58.936 47.619 0.00 0.00 0.00 4.40
3347 5676 0.393537 CTCTTCACTGGTCATGGGGC 60.394 60.000 0.00 0.00 0.00 5.80
3471 5917 5.506708 ACACCTTTAACAGAAAACTCCAGT 58.493 37.500 0.00 0.00 0.00 4.00
3510 5956 2.210116 CACACCCATAACTATCGGTGC 58.790 52.381 11.98 0.00 45.29 5.01
3601 6047 1.424403 TTGGTATCAACGAGCACACG 58.576 50.000 0.00 0.00 39.31 4.49
3607 6053 1.163420 TCAACGAGCACACGCCATTT 61.163 50.000 0.00 0.00 39.83 2.32
3608 6054 0.725784 CAACGAGCACACGCCATTTC 60.726 55.000 0.00 0.00 39.83 2.17
3609 6055 1.163420 AACGAGCACACGCCATTTCA 61.163 50.000 0.00 0.00 39.83 2.69
3610 6056 1.154413 CGAGCACACGCCATTTCAC 60.154 57.895 0.00 0.00 39.83 3.18
3611 6057 1.840630 CGAGCACACGCCATTTCACA 61.841 55.000 0.00 0.00 39.83 3.58
3612 6058 0.110056 GAGCACACGCCATTTCACAG 60.110 55.000 0.00 0.00 39.83 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.586564 CAGACTACGCGGTGCTAGC 60.587 63.158 12.47 8.10 0.00 3.42
1 2 0.248134 GTCAGACTACGCGGTGCTAG 60.248 60.000 12.47 5.39 0.00 3.42
3 4 2.567049 GTCAGACTACGCGGTGCT 59.433 61.111 12.47 0.00 0.00 4.40
5 6 0.179171 AATCGTCAGACTACGCGGTG 60.179 55.000 12.47 4.86 42.56 4.94
6 7 1.329906 CTAATCGTCAGACTACGCGGT 59.670 52.381 12.47 0.00 42.56 5.68
7 8 1.333881 CCTAATCGTCAGACTACGCGG 60.334 57.143 12.47 0.00 42.56 6.46
8 9 1.596260 TCCTAATCGTCAGACTACGCG 59.404 52.381 3.53 3.53 42.56 6.01
9 10 2.613133 ACTCCTAATCGTCAGACTACGC 59.387 50.000 0.00 0.00 42.56 4.42
10 11 4.879104 AACTCCTAATCGTCAGACTACG 57.121 45.455 0.00 0.00 44.19 3.51
11 12 5.125097 TGGAAACTCCTAATCGTCAGACTAC 59.875 44.000 0.00 0.00 37.46 2.73
12 13 5.258841 TGGAAACTCCTAATCGTCAGACTA 58.741 41.667 0.00 0.00 37.46 2.59
13 14 4.087182 TGGAAACTCCTAATCGTCAGACT 58.913 43.478 0.00 0.00 37.46 3.24
14 15 4.451629 TGGAAACTCCTAATCGTCAGAC 57.548 45.455 0.00 0.00 37.46 3.51
15 16 4.099573 GGATGGAAACTCCTAATCGTCAGA 59.900 45.833 0.00 0.00 37.46 3.27
16 17 4.100189 AGGATGGAAACTCCTAATCGTCAG 59.900 45.833 0.00 0.00 41.42 3.51
17 18 4.030913 AGGATGGAAACTCCTAATCGTCA 58.969 43.478 0.00 0.00 41.42 4.35
18 19 4.342665 AGAGGATGGAAACTCCTAATCGTC 59.657 45.833 7.26 7.26 43.29 4.20
19 20 4.290942 AGAGGATGGAAACTCCTAATCGT 58.709 43.478 0.00 0.00 43.29 3.73
20 21 4.262249 GGAGAGGATGGAAACTCCTAATCG 60.262 50.000 0.00 0.00 43.29 3.34
21 22 4.041075 GGGAGAGGATGGAAACTCCTAATC 59.959 50.000 0.00 0.00 43.29 1.75
22 23 3.977326 GGGAGAGGATGGAAACTCCTAAT 59.023 47.826 0.00 0.00 43.29 1.73
23 24 3.014110 AGGGAGAGGATGGAAACTCCTAA 59.986 47.826 0.00 0.00 43.29 2.69
24 25 2.592512 AGGGAGAGGATGGAAACTCCTA 59.407 50.000 0.00 0.00 43.29 2.94
25 26 1.367848 AGGGAGAGGATGGAAACTCCT 59.632 52.381 0.00 0.00 45.95 3.69
26 27 1.886422 AGGGAGAGGATGGAAACTCC 58.114 55.000 0.00 0.00 45.50 3.85
27 28 3.615155 CAAAGGGAGAGGATGGAAACTC 58.385 50.000 0.00 0.00 0.00 3.01
28 29 2.291217 GCAAAGGGAGAGGATGGAAACT 60.291 50.000 0.00 0.00 0.00 2.66
29 30 2.095461 GCAAAGGGAGAGGATGGAAAC 58.905 52.381 0.00 0.00 0.00 2.78
30 31 1.710244 TGCAAAGGGAGAGGATGGAAA 59.290 47.619 0.00 0.00 0.00 3.13
31 32 1.004745 GTGCAAAGGGAGAGGATGGAA 59.995 52.381 0.00 0.00 0.00 3.53
32 33 0.620556 GTGCAAAGGGAGAGGATGGA 59.379 55.000 0.00 0.00 0.00 3.41
33 34 0.329261 TGTGCAAAGGGAGAGGATGG 59.671 55.000 0.00 0.00 0.00 3.51
34 35 2.092538 AGATGTGCAAAGGGAGAGGATG 60.093 50.000 0.00 0.00 0.00 3.51
35 36 2.203584 AGATGTGCAAAGGGAGAGGAT 58.796 47.619 0.00 0.00 0.00 3.24
36 37 1.661463 AGATGTGCAAAGGGAGAGGA 58.339 50.000 0.00 0.00 0.00 3.71
37 38 3.634397 TTAGATGTGCAAAGGGAGAGG 57.366 47.619 0.00 0.00 0.00 3.69
38 39 6.586344 TCTTATTAGATGTGCAAAGGGAGAG 58.414 40.000 0.00 0.00 0.00 3.20
39 40 6.560003 TCTTATTAGATGTGCAAAGGGAGA 57.440 37.500 0.00 0.00 0.00 3.71
40 41 5.238214 GCTCTTATTAGATGTGCAAAGGGAG 59.762 44.000 0.00 0.00 0.00 4.30
41 42 5.104360 AGCTCTTATTAGATGTGCAAAGGGA 60.104 40.000 0.00 0.00 0.00 4.20
42 43 5.128919 AGCTCTTATTAGATGTGCAAAGGG 58.871 41.667 0.00 0.00 0.00 3.95
43 44 6.094603 ACAAGCTCTTATTAGATGTGCAAAGG 59.905 38.462 0.00 0.00 0.00 3.11
44 45 6.965500 CACAAGCTCTTATTAGATGTGCAAAG 59.035 38.462 0.00 0.00 32.65 2.77
45 46 6.654582 TCACAAGCTCTTATTAGATGTGCAAA 59.345 34.615 8.43 0.00 36.54 3.68
46 47 6.172630 TCACAAGCTCTTATTAGATGTGCAA 58.827 36.000 8.43 0.00 36.54 4.08
47 48 5.733676 TCACAAGCTCTTATTAGATGTGCA 58.266 37.500 8.43 0.00 36.54 4.57
48 49 6.314896 AGTTCACAAGCTCTTATTAGATGTGC 59.685 38.462 8.43 0.00 36.54 4.57
49 50 7.840342 AGTTCACAAGCTCTTATTAGATGTG 57.160 36.000 7.36 7.36 37.27 3.21
50 51 8.754080 ACTAGTTCACAAGCTCTTATTAGATGT 58.246 33.333 0.00 0.00 0.00 3.06
53 54 9.239551 TGTACTAGTTCACAAGCTCTTATTAGA 57.760 33.333 0.00 0.00 0.00 2.10
56 57 8.754080 AGATGTACTAGTTCACAAGCTCTTATT 58.246 33.333 0.00 0.00 0.00 1.40
57 58 8.299990 AGATGTACTAGTTCACAAGCTCTTAT 57.700 34.615 0.00 0.00 0.00 1.73
58 59 7.612244 AGAGATGTACTAGTTCACAAGCTCTTA 59.388 37.037 19.07 0.00 37.27 2.10
59 60 6.435904 AGAGATGTACTAGTTCACAAGCTCTT 59.564 38.462 19.07 10.34 37.27 2.85
60 61 5.949354 AGAGATGTACTAGTTCACAAGCTCT 59.051 40.000 19.07 19.07 36.49 4.09
61 62 6.033341 CAGAGATGTACTAGTTCACAAGCTC 58.967 44.000 16.59 16.59 33.68 4.09
62 63 5.712446 TCAGAGATGTACTAGTTCACAAGCT 59.288 40.000 0.00 2.63 0.00 3.74
63 64 5.955488 TCAGAGATGTACTAGTTCACAAGC 58.045 41.667 0.00 0.00 0.00 4.01
64 65 7.094592 TGTCTCAGAGATGTACTAGTTCACAAG 60.095 40.741 2.64 0.00 0.00 3.16
65 66 6.715264 TGTCTCAGAGATGTACTAGTTCACAA 59.285 38.462 2.64 0.00 0.00 3.33
66 67 6.149640 GTGTCTCAGAGATGTACTAGTTCACA 59.850 42.308 2.64 0.00 0.00 3.58
67 68 6.373216 AGTGTCTCAGAGATGTACTAGTTCAC 59.627 42.308 2.64 3.13 0.00 3.18
68 69 6.477253 AGTGTCTCAGAGATGTACTAGTTCA 58.523 40.000 2.64 1.74 0.00 3.18
69 70 6.995511 AGTGTCTCAGAGATGTACTAGTTC 57.004 41.667 2.64 0.00 0.00 3.01
70 71 7.172342 AGAAGTGTCTCAGAGATGTACTAGTT 58.828 38.462 2.64 0.00 0.00 2.24
71 72 6.717289 AGAAGTGTCTCAGAGATGTACTAGT 58.283 40.000 2.64 0.00 0.00 2.57
72 73 7.471721 CAAGAAGTGTCTCAGAGATGTACTAG 58.528 42.308 2.64 0.00 30.70 2.57
73 74 6.127869 GCAAGAAGTGTCTCAGAGATGTACTA 60.128 42.308 2.64 0.00 30.70 1.82
74 75 5.336372 GCAAGAAGTGTCTCAGAGATGTACT 60.336 44.000 2.64 6.30 30.70 2.73
75 76 4.862018 GCAAGAAGTGTCTCAGAGATGTAC 59.138 45.833 2.64 4.08 30.70 2.90
76 77 4.524328 TGCAAGAAGTGTCTCAGAGATGTA 59.476 41.667 2.64 0.00 30.70 2.29
77 78 3.323115 TGCAAGAAGTGTCTCAGAGATGT 59.677 43.478 2.64 0.00 30.70 3.06
78 79 3.922910 TGCAAGAAGTGTCTCAGAGATG 58.077 45.455 2.64 0.00 30.70 2.90
79 80 4.613925 TTGCAAGAAGTGTCTCAGAGAT 57.386 40.909 2.64 0.00 30.70 2.75
80 81 4.122776 GTTTGCAAGAAGTGTCTCAGAGA 58.877 43.478 0.00 0.00 30.70 3.10
81 82 3.249559 GGTTTGCAAGAAGTGTCTCAGAG 59.750 47.826 0.00 0.00 30.70 3.35
82 83 3.206150 GGTTTGCAAGAAGTGTCTCAGA 58.794 45.455 0.00 0.00 30.70 3.27
83 84 2.945008 TGGTTTGCAAGAAGTGTCTCAG 59.055 45.455 0.00 0.00 30.70 3.35
84 85 2.997980 TGGTTTGCAAGAAGTGTCTCA 58.002 42.857 0.00 0.00 30.70 3.27
85 86 3.565482 TGATGGTTTGCAAGAAGTGTCTC 59.435 43.478 0.00 0.00 30.70 3.36
86 87 3.316308 GTGATGGTTTGCAAGAAGTGTCT 59.684 43.478 0.00 0.00 34.72 3.41
87 88 3.550842 GGTGATGGTTTGCAAGAAGTGTC 60.551 47.826 0.00 0.00 0.00 3.67
88 89 2.362077 GGTGATGGTTTGCAAGAAGTGT 59.638 45.455 0.00 0.00 0.00 3.55
89 90 2.361757 TGGTGATGGTTTGCAAGAAGTG 59.638 45.455 0.00 0.00 0.00 3.16
90 91 2.665165 TGGTGATGGTTTGCAAGAAGT 58.335 42.857 0.00 0.00 0.00 3.01
91 92 3.181477 TGTTGGTGATGGTTTGCAAGAAG 60.181 43.478 0.00 0.00 0.00 2.85
92 93 2.762887 TGTTGGTGATGGTTTGCAAGAA 59.237 40.909 0.00 0.00 0.00 2.52
93 94 2.100584 GTGTTGGTGATGGTTTGCAAGA 59.899 45.455 0.00 0.00 0.00 3.02
94 95 2.472816 GTGTTGGTGATGGTTTGCAAG 58.527 47.619 0.00 0.00 0.00 4.01
95 96 1.137872 GGTGTTGGTGATGGTTTGCAA 59.862 47.619 0.00 0.00 0.00 4.08
96 97 0.749649 GGTGTTGGTGATGGTTTGCA 59.250 50.000 0.00 0.00 0.00 4.08
97 98 0.749649 TGGTGTTGGTGATGGTTTGC 59.250 50.000 0.00 0.00 0.00 3.68
98 99 2.034558 GTCTGGTGTTGGTGATGGTTTG 59.965 50.000 0.00 0.00 0.00 2.93
99 100 2.306847 GTCTGGTGTTGGTGATGGTTT 58.693 47.619 0.00 0.00 0.00 3.27
100 101 1.214175 TGTCTGGTGTTGGTGATGGTT 59.786 47.619 0.00 0.00 0.00 3.67
101 102 0.843309 TGTCTGGTGTTGGTGATGGT 59.157 50.000 0.00 0.00 0.00 3.55
102 103 1.814394 CATGTCTGGTGTTGGTGATGG 59.186 52.381 0.00 0.00 0.00 3.51
103 104 2.507484 ACATGTCTGGTGTTGGTGATG 58.493 47.619 0.00 0.00 0.00 3.07
104 105 2.957402 ACATGTCTGGTGTTGGTGAT 57.043 45.000 0.00 0.00 0.00 3.06
105 106 2.549992 GCTACATGTCTGGTGTTGGTGA 60.550 50.000 0.00 0.00 0.00 4.02
106 107 1.806542 GCTACATGTCTGGTGTTGGTG 59.193 52.381 0.00 0.00 0.00 4.17
107 108 1.419762 TGCTACATGTCTGGTGTTGGT 59.580 47.619 0.00 0.00 0.00 3.67
108 109 2.183478 TGCTACATGTCTGGTGTTGG 57.817 50.000 0.00 0.00 0.00 3.77
109 110 3.076621 ACATGCTACATGTCTGGTGTTG 58.923 45.455 0.00 0.00 0.00 3.33
110 111 3.076621 CACATGCTACATGTCTGGTGTT 58.923 45.455 10.16 0.00 0.00 3.32
111 112 2.616256 CCACATGCTACATGTCTGGTGT 60.616 50.000 10.16 1.08 0.00 4.16
112 113 2.011947 CCACATGCTACATGTCTGGTG 58.988 52.381 10.16 5.40 0.00 4.17
113 114 1.908619 TCCACATGCTACATGTCTGGT 59.091 47.619 10.16 0.00 0.00 4.00
114 115 2.283298 GTCCACATGCTACATGTCTGG 58.717 52.381 10.16 9.91 0.00 3.86
115 116 2.934553 CTGTCCACATGCTACATGTCTG 59.065 50.000 10.16 5.53 0.00 3.51
116 117 2.679059 GCTGTCCACATGCTACATGTCT 60.679 50.000 10.16 0.00 0.00 3.41
117 118 1.667724 GCTGTCCACATGCTACATGTC 59.332 52.381 10.16 1.24 0.00 3.06
118 119 1.679944 GGCTGTCCACATGCTACATGT 60.680 52.381 2.69 2.69 0.00 3.21
119 120 1.019673 GGCTGTCCACATGCTACATG 58.980 55.000 6.03 6.03 0.00 3.21
120 121 0.620030 TGGCTGTCCACATGCTACAT 59.380 50.000 0.00 0.00 37.47 2.29
121 122 0.399833 TTGGCTGTCCACATGCTACA 59.600 50.000 0.00 0.00 43.33 2.74
122 123 0.804989 GTTGGCTGTCCACATGCTAC 59.195 55.000 0.00 0.00 43.33 3.58
123 124 0.322456 GGTTGGCTGTCCACATGCTA 60.322 55.000 0.00 0.00 43.33 3.49
124 125 1.604593 GGTTGGCTGTCCACATGCT 60.605 57.895 0.00 0.00 43.33 3.79
125 126 2.964978 GGTTGGCTGTCCACATGC 59.035 61.111 0.00 0.00 43.33 4.06
126 127 2.981560 GCGGTTGGCTGTCCACATG 61.982 63.158 0.00 0.00 43.33 3.21
127 128 2.672996 GCGGTTGGCTGTCCACAT 60.673 61.111 0.00 0.00 43.33 3.21
136 137 0.750850 TCCATCTAGTAGCGGTTGGC 59.249 55.000 0.00 0.00 44.05 4.52
137 138 1.068741 GGTCCATCTAGTAGCGGTTGG 59.931 57.143 0.00 0.00 0.00 3.77
138 139 1.068741 GGGTCCATCTAGTAGCGGTTG 59.931 57.143 0.00 0.00 0.00 3.77
139 140 1.063114 AGGGTCCATCTAGTAGCGGTT 60.063 52.381 0.00 0.00 0.00 4.44
140 141 0.556747 AGGGTCCATCTAGTAGCGGT 59.443 55.000 0.00 0.00 0.00 5.68
141 142 1.614413 GAAGGGTCCATCTAGTAGCGG 59.386 57.143 0.00 0.00 0.00 5.52
142 143 1.614413 GGAAGGGTCCATCTAGTAGCG 59.386 57.143 0.00 0.00 44.26 4.26
164 165 0.104304 AGCGTGGCGAAACCTATAGG 59.896 55.000 17.73 17.73 40.22 2.57
165 166 1.202371 TCAGCGTGGCGAAACCTATAG 60.202 52.381 0.00 0.00 40.22 1.31
166 167 0.818938 TCAGCGTGGCGAAACCTATA 59.181 50.000 0.00 0.00 40.22 1.31
167 168 0.178068 ATCAGCGTGGCGAAACCTAT 59.822 50.000 0.00 0.00 40.22 2.57
168 169 0.739462 CATCAGCGTGGCGAAACCTA 60.739 55.000 0.00 0.00 40.22 3.08
169 170 2.034879 CATCAGCGTGGCGAAACCT 61.035 57.895 0.00 0.00 40.22 3.50
170 171 2.480555 CATCAGCGTGGCGAAACC 59.519 61.111 0.00 0.00 39.84 3.27
171 172 1.852067 AACCATCAGCGTGGCGAAAC 61.852 55.000 5.84 0.00 43.27 2.78
172 173 1.599518 AACCATCAGCGTGGCGAAA 60.600 52.632 5.84 0.00 43.27 3.46
173 174 2.031919 AACCATCAGCGTGGCGAA 59.968 55.556 5.84 0.00 43.27 4.70
174 175 2.520465 ATCAACCATCAGCGTGGCGA 62.520 55.000 5.84 4.05 43.27 5.54
175 176 2.108514 ATCAACCATCAGCGTGGCG 61.109 57.895 5.84 0.00 43.27 5.69
176 177 1.430632 CATCAACCATCAGCGTGGC 59.569 57.895 5.84 0.00 43.27 5.01
177 178 1.378882 CCCATCAACCATCAGCGTGG 61.379 60.000 4.55 4.55 45.04 4.94
178 179 1.378882 CCCCATCAACCATCAGCGTG 61.379 60.000 0.00 0.00 0.00 5.34
179 180 1.077501 CCCCATCAACCATCAGCGT 60.078 57.895 0.00 0.00 0.00 5.07
180 181 2.484062 GCCCCATCAACCATCAGCG 61.484 63.158 0.00 0.00 0.00 5.18
181 182 1.380246 TGCCCCATCAACCATCAGC 60.380 57.895 0.00 0.00 0.00 4.26
182 183 0.033796 ACTGCCCCATCAACCATCAG 60.034 55.000 0.00 0.00 0.00 2.90
183 184 0.323633 CACTGCCCCATCAACCATCA 60.324 55.000 0.00 0.00 0.00 3.07
184 185 0.323725 ACACTGCCCCATCAACCATC 60.324 55.000 0.00 0.00 0.00 3.51
185 186 0.323725 GACACTGCCCCATCAACCAT 60.324 55.000 0.00 0.00 0.00 3.55
186 187 1.074775 GACACTGCCCCATCAACCA 59.925 57.895 0.00 0.00 0.00 3.67
187 188 2.040544 CGACACTGCCCCATCAACC 61.041 63.158 0.00 0.00 0.00 3.77
188 189 0.605319 TTCGACACTGCCCCATCAAC 60.605 55.000 0.00 0.00 0.00 3.18
189 190 0.321564 CTTCGACACTGCCCCATCAA 60.322 55.000 0.00 0.00 0.00 2.57
190 191 1.296392 CTTCGACACTGCCCCATCA 59.704 57.895 0.00 0.00 0.00 3.07
191 192 0.741221 GACTTCGACACTGCCCCATC 60.741 60.000 0.00 0.00 0.00 3.51
192 193 1.194781 AGACTTCGACACTGCCCCAT 61.195 55.000 0.00 0.00 0.00 4.00
193 194 1.816863 GAGACTTCGACACTGCCCCA 61.817 60.000 0.00 0.00 0.00 4.96
194 195 1.079750 GAGACTTCGACACTGCCCC 60.080 63.158 0.00 0.00 0.00 5.80
195 196 4.580835 GAGACTTCGACACTGCCC 57.419 61.111 0.00 0.00 0.00 5.36
205 206 2.052157 CGAACCAACACTCGAGACTTC 58.948 52.381 21.68 8.56 37.23 3.01
206 207 1.269621 CCGAACCAACACTCGAGACTT 60.270 52.381 21.68 6.48 37.23 3.01
207 208 0.314302 CCGAACCAACACTCGAGACT 59.686 55.000 21.68 0.00 37.23 3.24
208 209 0.031721 ACCGAACCAACACTCGAGAC 59.968 55.000 21.68 0.00 37.23 3.36
209 210 1.608055 TACCGAACCAACACTCGAGA 58.392 50.000 21.68 0.00 37.23 4.04
210 211 2.030540 TCTTACCGAACCAACACTCGAG 60.031 50.000 11.84 11.84 37.23 4.04
211 212 1.955778 TCTTACCGAACCAACACTCGA 59.044 47.619 0.00 0.00 37.23 4.04
212 213 2.325761 CTCTTACCGAACCAACACTCG 58.674 52.381 0.00 0.00 34.83 4.18
213 214 2.067013 GCTCTTACCGAACCAACACTC 58.933 52.381 0.00 0.00 0.00 3.51
214 215 1.414919 TGCTCTTACCGAACCAACACT 59.585 47.619 0.00 0.00 0.00 3.55
215 216 1.873698 TGCTCTTACCGAACCAACAC 58.126 50.000 0.00 0.00 0.00 3.32
216 217 2.623878 TTGCTCTTACCGAACCAACA 57.376 45.000 0.00 0.00 0.00 3.33
217 218 4.495844 GCATATTGCTCTTACCGAACCAAC 60.496 45.833 0.00 0.00 40.96 3.77
218 219 3.625764 GCATATTGCTCTTACCGAACCAA 59.374 43.478 0.00 0.00 40.96 3.67
219 220 3.202906 GCATATTGCTCTTACCGAACCA 58.797 45.455 0.00 0.00 40.96 3.67
220 221 3.202906 TGCATATTGCTCTTACCGAACC 58.797 45.455 0.75 0.00 45.31 3.62
221 222 3.248602 CCTGCATATTGCTCTTACCGAAC 59.751 47.826 0.75 0.00 45.31 3.95
222 223 3.466836 CCTGCATATTGCTCTTACCGAA 58.533 45.455 0.75 0.00 45.31 4.30
223 224 2.224281 CCCTGCATATTGCTCTTACCGA 60.224 50.000 0.75 0.00 45.31 4.69
224 225 2.146342 CCCTGCATATTGCTCTTACCG 58.854 52.381 0.75 0.00 45.31 4.02
225 226 3.142174 GTCCCTGCATATTGCTCTTACC 58.858 50.000 0.75 0.00 45.31 2.85
226 227 3.808728 TGTCCCTGCATATTGCTCTTAC 58.191 45.455 0.75 0.00 45.31 2.34
227 228 3.455910 ACTGTCCCTGCATATTGCTCTTA 59.544 43.478 0.75 0.00 45.31 2.10
228 229 2.240667 ACTGTCCCTGCATATTGCTCTT 59.759 45.455 0.75 0.00 45.31 2.85
229 230 1.842562 ACTGTCCCTGCATATTGCTCT 59.157 47.619 0.75 0.00 45.31 4.09
230 231 1.945394 CACTGTCCCTGCATATTGCTC 59.055 52.381 0.75 0.00 45.31 4.26
231 232 1.561076 TCACTGTCCCTGCATATTGCT 59.439 47.619 0.75 0.00 45.31 3.91
232 233 2.042686 TCACTGTCCCTGCATATTGC 57.957 50.000 0.00 0.00 45.29 3.56
233 234 2.882761 CCATCACTGTCCCTGCATATTG 59.117 50.000 0.00 0.00 0.00 1.90
234 235 2.779430 TCCATCACTGTCCCTGCATATT 59.221 45.455 0.00 0.00 0.00 1.28
235 236 2.411583 TCCATCACTGTCCCTGCATAT 58.588 47.619 0.00 0.00 0.00 1.78
236 237 1.878211 TCCATCACTGTCCCTGCATA 58.122 50.000 0.00 0.00 0.00 3.14
237 238 1.219773 ATCCATCACTGTCCCTGCAT 58.780 50.000 0.00 0.00 0.00 3.96
238 239 0.994247 AATCCATCACTGTCCCTGCA 59.006 50.000 0.00 0.00 0.00 4.41
239 240 1.340405 ACAATCCATCACTGTCCCTGC 60.340 52.381 0.00 0.00 0.00 4.85
247 248 6.760440 AGATCCAAGATACAATCCATCACT 57.240 37.500 0.00 0.00 0.00 3.41
248 249 6.146837 CGAAGATCCAAGATACAATCCATCAC 59.853 42.308 0.00 0.00 0.00 3.06
298 299 0.319641 GCTTCGAGAGTTGTCGGGTT 60.320 55.000 0.00 0.00 40.49 4.11
343 344 2.660189 GGCAACAATTCCATCACCAG 57.340 50.000 0.00 0.00 0.00 4.00
365 366 6.164876 CAGTCAGAGCCAATGATAATCCTAG 58.835 44.000 0.00 0.00 0.00 3.02
375 376 0.809385 CCTTGCAGTCAGAGCCAATG 59.191 55.000 0.00 0.00 0.00 2.82
377 378 0.473755 TTCCTTGCAGTCAGAGCCAA 59.526 50.000 0.00 0.00 0.00 4.52
378 379 0.035881 CTTCCTTGCAGTCAGAGCCA 59.964 55.000 0.00 0.00 0.00 4.75
380 381 1.155042 CACTTCCTTGCAGTCAGAGC 58.845 55.000 0.00 0.00 0.00 4.09
381 382 1.071385 ACCACTTCCTTGCAGTCAGAG 59.929 52.381 0.00 0.00 0.00 3.35
382 383 1.131638 ACCACTTCCTTGCAGTCAGA 58.868 50.000 0.00 0.00 0.00 3.27
383 384 1.233019 CACCACTTCCTTGCAGTCAG 58.767 55.000 0.00 0.00 0.00 3.51
384 385 0.819259 GCACCACTTCCTTGCAGTCA 60.819 55.000 0.00 0.00 36.22 3.41
385 386 1.518903 GGCACCACTTCCTTGCAGTC 61.519 60.000 0.00 0.00 38.04 3.51
387 388 1.108727 TTGGCACCACTTCCTTGCAG 61.109 55.000 0.00 0.00 38.04 4.41
388 389 0.685785 TTTGGCACCACTTCCTTGCA 60.686 50.000 0.00 0.00 38.04 4.08
389 390 0.249447 GTTTGGCACCACTTCCTTGC 60.249 55.000 0.00 0.00 35.40 4.01
391 392 0.395173 ACGTTTGGCACCACTTCCTT 60.395 50.000 0.00 0.00 0.00 3.36
392 393 0.818040 GACGTTTGGCACCACTTCCT 60.818 55.000 0.00 0.00 0.00 3.36
393 394 1.098712 TGACGTTTGGCACCACTTCC 61.099 55.000 0.00 0.00 0.00 3.46
394 395 0.736053 TTGACGTTTGGCACCACTTC 59.264 50.000 0.00 0.00 0.00 3.01
395 396 1.134175 CTTTGACGTTTGGCACCACTT 59.866 47.619 0.00 0.00 0.00 3.16
396 397 0.738389 CTTTGACGTTTGGCACCACT 59.262 50.000 0.00 0.00 0.00 4.00
398 399 1.403679 CTTCTTTGACGTTTGGCACCA 59.596 47.619 0.00 0.00 0.00 4.17
399 400 1.269051 CCTTCTTTGACGTTTGGCACC 60.269 52.381 0.00 0.00 0.00 5.01
400 401 1.864029 GCCTTCTTTGACGTTTGGCAC 60.864 52.381 0.00 0.00 38.79 5.01
401 402 0.383949 GCCTTCTTTGACGTTTGGCA 59.616 50.000 0.00 0.00 38.79 4.92
402 403 0.383949 TGCCTTCTTTGACGTTTGGC 59.616 50.000 0.00 0.00 39.33 4.52
403 404 2.861462 TTGCCTTCTTTGACGTTTGG 57.139 45.000 0.00 0.00 0.00 3.28
404 405 3.705604 ACATTGCCTTCTTTGACGTTTG 58.294 40.909 0.00 0.00 0.00 2.93
405 406 4.023193 CCTACATTGCCTTCTTTGACGTTT 60.023 41.667 0.00 0.00 0.00 3.60
406 407 3.502211 CCTACATTGCCTTCTTTGACGTT 59.498 43.478 0.00 0.00 0.00 3.99
407 408 3.074412 CCTACATTGCCTTCTTTGACGT 58.926 45.455 0.00 0.00 0.00 4.34
409 410 3.686016 TCCCTACATTGCCTTCTTTGAC 58.314 45.455 0.00 0.00 0.00 3.18
411 412 4.272489 TCATCCCTACATTGCCTTCTTTG 58.728 43.478 0.00 0.00 0.00 2.77
412 413 4.591321 TCATCCCTACATTGCCTTCTTT 57.409 40.909 0.00 0.00 0.00 2.52
414 415 4.467769 CATTCATCCCTACATTGCCTTCT 58.532 43.478 0.00 0.00 0.00 2.85
415 416 3.571401 CCATTCATCCCTACATTGCCTTC 59.429 47.826 0.00 0.00 0.00 3.46
416 417 3.569491 CCATTCATCCCTACATTGCCTT 58.431 45.455 0.00 0.00 0.00 4.35
417 418 2.754186 GCCATTCATCCCTACATTGCCT 60.754 50.000 0.00 0.00 0.00 4.75
420 421 9.857656 ATTATATAGCCATTCATCCCTACATTG 57.142 33.333 0.00 0.00 0.00 2.82
422 423 9.229276 TCATTATATAGCCATTCATCCCTACAT 57.771 33.333 0.00 0.00 0.00 2.29
424 425 8.928448 TCTCATTATATAGCCATTCATCCCTAC 58.072 37.037 0.00 0.00 0.00 3.18
425 426 9.680409 ATCTCATTATATAGCCATTCATCCCTA 57.320 33.333 0.00 0.00 0.00 3.53
427 428 8.435187 TGATCTCATTATATAGCCATTCATCCC 58.565 37.037 0.00 0.00 0.00 3.85
428 429 9.842775 TTGATCTCATTATATAGCCATTCATCC 57.157 33.333 0.00 0.00 0.00 3.51
499 539 2.482142 CCTCAACATTCGAGGCTCTACC 60.482 54.545 13.50 0.00 43.50 3.18
500 540 2.815478 CCTCAACATTCGAGGCTCTAC 58.185 52.381 13.50 0.00 43.50 2.59
507 547 3.063997 GGTAATGTGCCTCAACATTCGAG 59.936 47.826 5.87 0.00 45.47 4.04
508 548 3.006940 GGTAATGTGCCTCAACATTCGA 58.993 45.455 5.87 0.00 45.47 3.71
510 550 5.183904 AGAAAGGTAATGTGCCTCAACATTC 59.816 40.000 5.87 0.07 45.47 2.67
512 552 4.666512 AGAAAGGTAATGTGCCTCAACAT 58.333 39.130 0.00 0.00 42.62 2.71
513 553 4.098914 AGAAAGGTAATGTGCCTCAACA 57.901 40.909 0.00 0.00 34.81 3.33
515 555 5.876357 ACTTAGAAAGGTAATGTGCCTCAA 58.124 37.500 0.00 0.00 34.81 3.02
517 557 6.017852 GCATACTTAGAAAGGTAATGTGCCTC 60.018 42.308 0.00 0.00 34.81 4.70
518 558 5.823045 GCATACTTAGAAAGGTAATGTGCCT 59.177 40.000 0.00 0.00 38.11 4.75
519 559 5.588648 TGCATACTTAGAAAGGTAATGTGCC 59.411 40.000 0.00 0.00 0.00 5.01
520 560 6.316390 AGTGCATACTTAGAAAGGTAATGTGC 59.684 38.462 0.00 0.00 31.66 4.57
521 561 7.849804 AGTGCATACTTAGAAAGGTAATGTG 57.150 36.000 0.00 0.00 31.66 3.21
522 562 9.379791 GTAAGTGCATACTTAGAAAGGTAATGT 57.620 33.333 0.00 0.00 46.91 2.71
523 563 9.601217 AGTAAGTGCATACTTAGAAAGGTAATG 57.399 33.333 0.00 0.00 46.91 1.90
524 564 9.819267 GAGTAAGTGCATACTTAGAAAGGTAAT 57.181 33.333 1.63 0.00 46.91 1.89
525 565 9.032624 AGAGTAAGTGCATACTTAGAAAGGTAA 57.967 33.333 1.63 0.00 46.91 2.85
526 566 8.591114 AGAGTAAGTGCATACTTAGAAAGGTA 57.409 34.615 1.63 0.00 46.91 3.08
527 567 7.483580 AGAGTAAGTGCATACTTAGAAAGGT 57.516 36.000 1.63 0.00 46.91 3.50
528 568 9.685828 GATAGAGTAAGTGCATACTTAGAAAGG 57.314 37.037 1.63 0.00 46.91 3.11
531 571 8.353684 GCAGATAGAGTAAGTGCATACTTAGAA 58.646 37.037 1.63 0.00 46.91 2.10
532 572 7.502561 TGCAGATAGAGTAAGTGCATACTTAGA 59.497 37.037 1.63 0.00 46.91 2.10
533 573 7.652727 TGCAGATAGAGTAAGTGCATACTTAG 58.347 38.462 1.63 0.00 46.91 2.18
534 574 7.255625 CCTGCAGATAGAGTAAGTGCATACTTA 60.256 40.741 17.39 0.00 45.07 2.24
536 576 5.010516 CCTGCAGATAGAGTAAGTGCATACT 59.989 44.000 17.39 0.00 42.92 2.12
537 577 5.010112 TCCTGCAGATAGAGTAAGTGCATAC 59.990 44.000 17.39 0.00 42.92 2.39
538 578 5.010112 GTCCTGCAGATAGAGTAAGTGCATA 59.990 44.000 17.39 0.00 42.92 3.14
539 579 3.963374 TCCTGCAGATAGAGTAAGTGCAT 59.037 43.478 17.39 0.00 42.92 3.96
541 581 3.131223 TGTCCTGCAGATAGAGTAAGTGC 59.869 47.826 17.39 0.00 34.62 4.40
542 582 4.440802 GGTGTCCTGCAGATAGAGTAAGTG 60.441 50.000 17.39 0.00 0.00 3.16
543 583 3.702045 GGTGTCCTGCAGATAGAGTAAGT 59.298 47.826 17.39 0.00 0.00 2.24
544 584 3.701542 TGGTGTCCTGCAGATAGAGTAAG 59.298 47.826 17.39 0.00 0.00 2.34
547 587 2.238084 TGGTGTCCTGCAGATAGAGT 57.762 50.000 17.39 0.00 0.00 3.24
548 588 2.964464 AGATGGTGTCCTGCAGATAGAG 59.036 50.000 17.39 0.00 0.00 2.43
549 589 3.037851 AGATGGTGTCCTGCAGATAGA 57.962 47.619 17.39 0.20 0.00 1.98
550 590 3.834489 AAGATGGTGTCCTGCAGATAG 57.166 47.619 17.39 0.00 0.00 2.08
555 595 3.344703 CCAAAGATGGTGTCCTGCA 57.655 52.632 0.00 0.00 42.18 4.41
630 704 5.761165 TTTTTAGGCTAACACGCTCTTTT 57.239 34.783 6.43 0.00 0.00 2.27
654 731 4.384208 GGAGAGGTGCAAGGCTTATTAGAA 60.384 45.833 0.00 0.00 0.00 2.10
669 747 1.040339 CCGGAGAAGGAGGAGAGGTG 61.040 65.000 0.00 0.00 0.00 4.00
699 777 3.363724 GCAATGTATTCGCGATATCGACA 59.636 43.478 28.63 21.59 43.02 4.35
774 852 6.503944 AGTAAGTGGGAGAAGGAGATTTCTA 58.496 40.000 0.00 0.00 37.53 2.10
777 855 6.265304 ACTAGTAAGTGGGAGAAGGAGATTT 58.735 40.000 0.00 0.00 33.57 2.17
799 877 3.626924 GTGTGGCTCCACCCGACT 61.627 66.667 15.76 0.00 45.63 4.18
800 878 3.883744 CTGTGTGGCTCCACCCGAC 62.884 68.421 15.76 8.50 45.63 4.79
834 916 1.542547 CCATATAGCGTTTCGGCCCTT 60.543 52.381 0.00 0.00 0.00 3.95
851 933 1.663695 CGTATTCTTTCGTGGGCCAT 58.336 50.000 10.70 0.00 0.00 4.40
877 959 0.987081 AGGCCCTGCTGATGATGAGT 60.987 55.000 0.00 0.00 0.00 3.41
888 981 0.899717 TGAATCCAAACAGGCCCTGC 60.900 55.000 11.63 0.00 37.29 4.85
924 1017 9.325198 GGTTTATTGTCTGAATCCAAACTTTTT 57.675 29.630 0.00 0.00 0.00 1.94
925 1018 7.931407 GGGTTTATTGTCTGAATCCAAACTTTT 59.069 33.333 0.00 0.00 0.00 2.27
926 1019 7.070571 TGGGTTTATTGTCTGAATCCAAACTTT 59.929 33.333 0.00 0.00 31.00 2.66
927 1020 6.553100 TGGGTTTATTGTCTGAATCCAAACTT 59.447 34.615 0.00 0.00 31.00 2.66
928 1021 6.015434 GTGGGTTTATTGTCTGAATCCAAACT 60.015 38.462 0.00 0.00 35.53 2.66
929 1022 6.156519 GTGGGTTTATTGTCTGAATCCAAAC 58.843 40.000 0.00 0.00 35.53 2.93
930 1023 5.048364 CGTGGGTTTATTGTCTGAATCCAAA 60.048 40.000 0.00 0.00 35.53 3.28
931 1024 4.457603 CGTGGGTTTATTGTCTGAATCCAA 59.542 41.667 0.00 0.00 35.53 3.53
932 1025 4.006989 CGTGGGTTTATTGTCTGAATCCA 58.993 43.478 0.00 0.00 31.45 3.41
933 1026 3.377172 CCGTGGGTTTATTGTCTGAATCC 59.623 47.826 0.00 0.00 0.00 3.01
934 1027 4.258543 TCCGTGGGTTTATTGTCTGAATC 58.741 43.478 0.00 0.00 0.00 2.52
935 1028 4.019681 TCTCCGTGGGTTTATTGTCTGAAT 60.020 41.667 0.00 0.00 0.00 2.57
1261 1355 5.245531 CACCTAAATTGCTCTCAAGTACCA 58.754 41.667 0.00 0.00 35.37 3.25
1331 1427 2.665165 TCCACACACCTCATGCTTTTT 58.335 42.857 0.00 0.00 0.00 1.94
1333 1429 2.592102 ATCCACACACCTCATGCTTT 57.408 45.000 0.00 0.00 0.00 3.51
1334 1430 3.347216 GTTATCCACACACCTCATGCTT 58.653 45.455 0.00 0.00 0.00 3.91
1335 1431 2.356125 GGTTATCCACACACCTCATGCT 60.356 50.000 0.00 0.00 0.00 3.79
1336 1432 2.017049 GGTTATCCACACACCTCATGC 58.983 52.381 0.00 0.00 0.00 4.06
1337 1433 3.634397 AGGTTATCCACACACCTCATG 57.366 47.619 0.00 0.00 35.99 3.07
1338 1434 3.330701 ACAAGGTTATCCACACACCTCAT 59.669 43.478 0.00 0.00 40.23 2.90
1339 1435 2.708861 ACAAGGTTATCCACACACCTCA 59.291 45.455 0.00 0.00 40.23 3.86
1340 1436 3.074412 CACAAGGTTATCCACACACCTC 58.926 50.000 0.00 0.00 40.23 3.85
1343 1439 1.539827 GCCACAAGGTTATCCACACAC 59.460 52.381 0.00 0.00 37.19 3.82
1361 1457 5.581085 GGGTATATACAGTTCATCAATCGCC 59.419 44.000 14.70 0.00 0.00 5.54
1362 1458 5.581085 GGGGTATATACAGTTCATCAATCGC 59.419 44.000 14.70 0.00 0.00 4.58
1363 1459 6.106673 GGGGGTATATACAGTTCATCAATCG 58.893 44.000 14.70 0.00 0.00 3.34
1439 1566 2.354328 ACCCCTCTATTTCCCACACAA 58.646 47.619 0.00 0.00 0.00 3.33
1450 1577 6.849697 TGGTCACATAATAGAAACCCCTCTAT 59.150 38.462 0.00 0.00 39.79 1.98
1453 1580 5.367945 TGGTCACATAATAGAAACCCCTC 57.632 43.478 0.00 0.00 0.00 4.30
1459 1586 9.952030 TCACAGTTTATGGTCACATAATAGAAA 57.048 29.630 1.49 0.00 46.01 2.52
1460 1587 9.378551 GTCACAGTTTATGGTCACATAATAGAA 57.621 33.333 1.49 0.00 46.01 2.10
1462 1589 8.820933 CAGTCACAGTTTATGGTCACATAATAG 58.179 37.037 1.49 0.00 46.01 1.73
1569 1696 0.741326 CATCGTCATCCTCGTCACCT 59.259 55.000 0.00 0.00 0.00 4.00
1648 1778 5.893897 TCATCATCATCCTCGACAGATAG 57.106 43.478 0.00 0.00 0.00 2.08
1779 1912 5.630121 ACCTCATCATTACCAACAACTTCA 58.370 37.500 0.00 0.00 0.00 3.02
1859 1992 0.950836 CCGACCAATGTTCAGTGCAA 59.049 50.000 0.00 0.00 0.00 4.08
1961 2095 6.322201 ACATATTTATGTCAAGGAGCCCTTTG 59.678 38.462 3.93 0.00 40.78 2.77
2041 2175 2.200081 AGCTCCCCTGCAAGATTCTTA 58.800 47.619 0.00 0.00 34.07 2.10
2234 2368 0.107459 GGAAGGTCCATCTGTGGCTC 60.107 60.000 0.00 0.00 45.63 4.70
2260 2394 1.662629 GACCATTCTGTGCTCATGACG 59.337 52.381 0.00 0.00 0.00 4.35
2293 2427 1.656441 CAGCTGCGCCTTTTTCAGT 59.344 52.632 4.18 0.00 0.00 3.41
2308 2442 7.704271 AGTAAACTTTTTCTAGTGTTTCCAGC 58.296 34.615 0.00 0.00 34.88 4.85
2498 2633 1.878953 TTGTCTTTCGTGGAAGGCTC 58.121 50.000 0.00 0.00 32.55 4.70
2667 2802 9.934190 GCATTTCACAGTTTGAATTTACATTTT 57.066 25.926 0.00 0.00 43.99 1.82
2719 2855 8.846943 TCAGAGCAAGAAACATAAAAGATACA 57.153 30.769 0.00 0.00 0.00 2.29
2939 5259 0.527113 TGTGAAATGCCATGCTTCCG 59.473 50.000 0.00 0.00 0.00 4.30
2974 5294 2.266689 CCTCCCACGTAAACCGGG 59.733 66.667 6.32 1.41 42.24 5.73
3064 5384 4.868314 AAACACTACACCAGAGTACCTC 57.132 45.455 0.00 0.00 0.00 3.85
3083 5403 9.126151 TCAATGTCAGACAACTTTATACCAAAA 57.874 29.630 7.50 0.00 0.00 2.44
3162 5482 7.147312 TGTGAAAATCAAATACTTCAAGCTGG 58.853 34.615 0.00 0.00 30.03 4.85
3265 5594 9.448438 AAAATGCATGTACTTGATTACAGTAGA 57.552 29.630 12.65 0.00 35.44 2.59
3471 5917 6.016610 GGGTGTGTGAAGCTAAATTTGAAGTA 60.017 38.462 0.00 0.00 0.00 2.24
3550 5996 4.458989 TGCTATGAATGGTGAAAACTCCAC 59.541 41.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.