Multiple sequence alignment - TraesCS7D01G349100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G349100 chr7D 100.000 4394 0 0 1 4394 448854456 448858849 0.000000e+00 8115.0
1 TraesCS7D01G349100 chr7D 84.588 2563 339 29 949 3472 625355414 625352869 0.000000e+00 2494.0
2 TraesCS7D01G349100 chr7D 81.825 2663 408 47 853 3480 625250435 625253056 0.000000e+00 2167.0
3 TraesCS7D01G349100 chr7D 96.629 89 3 0 4214 4302 93543105 93543017 9.850000e-32 148.0
4 TraesCS7D01G349100 chr7D 96.591 88 3 0 4211 4298 624842031 624842118 3.540000e-31 147.0
5 TraesCS7D01G349100 chr7D 95.349 86 4 0 95 180 362365387 362365302 2.130000e-28 137.0
6 TraesCS7D01G349100 chr7A 94.463 3666 159 19 563 4214 547114518 547110883 0.000000e+00 5605.0
7 TraesCS7D01G349100 chr7A 81.882 2561 398 40 949 3476 720864357 720861830 0.000000e+00 2098.0
8 TraesCS7D01G349100 chr7A 82.786 2283 342 28 1144 3391 720885032 720887298 0.000000e+00 1991.0
9 TraesCS7D01G349100 chr7A 95.349 473 22 0 2491 2963 547102329 547101857 0.000000e+00 752.0
10 TraesCS7D01G349100 chr7A 84.064 251 19 8 188 430 547114791 547114554 5.720000e-54 222.0
11 TraesCS7D01G349100 chr7A 93.269 104 2 1 4296 4394 547110882 547110779 9.850000e-32 148.0
12 TraesCS7D01G349100 chr7A 91.579 95 8 0 87 181 7596891 7596985 9.920000e-27 132.0
13 TraesCS7D01G349100 chr7A 100.000 39 0 0 505 543 547114550 547114512 6.100000e-09 73.1
14 TraesCS7D01G349100 chr7B 89.690 3676 294 46 504 4122 466668439 466672086 0.000000e+00 4610.0
15 TraesCS7D01G349100 chr7B 85.018 2563 330 31 949 3472 724955948 724953401 0.000000e+00 2556.0
16 TraesCS7D01G349100 chr7B 81.386 2670 420 47 848 3480 723903056 723900427 0.000000e+00 2106.0
17 TraesCS7D01G349100 chr7B 82.246 2467 385 31 971 3406 723929186 723931630 0.000000e+00 2080.0
18 TraesCS7D01G349100 chr7B 80.458 1397 223 26 1628 3000 723837062 723835692 0.000000e+00 1022.0
19 TraesCS7D01G349100 chr7B 91.753 97 7 1 84 180 553217805 553217900 2.760000e-27 134.0
20 TraesCS7D01G349100 chr1B 84.794 2453 340 16 926 3357 623547490 623549930 0.000000e+00 2433.0
21 TraesCS7D01G349100 chr1B 83.158 760 109 11 2834 3587 622964403 622963657 0.000000e+00 676.0
22 TraesCS7D01G349100 chr1B 92.708 96 6 1 87 182 480369765 480369671 2.130000e-28 137.0
23 TraesCS7D01G349100 chr1D 84.553 2460 347 16 926 3364 453113307 453115754 0.000000e+00 2407.0
24 TraesCS7D01G349100 chr1D 94.565 92 5 0 89 180 90207939 90208030 4.580000e-30 143.0
25 TraesCS7D01G349100 chr6A 81.418 2567 414 42 949 3481 608493806 608491269 0.000000e+00 2039.0
26 TraesCS7D01G349100 chrUn 96.591 88 3 0 4211 4298 222975767 222975854 3.540000e-31 147.0
27 TraesCS7D01G349100 chrUn 96.591 88 3 0 4211 4298 303647901 303647988 3.540000e-31 147.0
28 TraesCS7D01G349100 chr3B 96.629 89 2 1 4214 4301 147657121 147657033 3.540000e-31 147.0
29 TraesCS7D01G349100 chr1A 95.604 91 4 0 4212 4302 122307317 122307227 3.540000e-31 147.0
30 TraesCS7D01G349100 chr1A 93.878 98 4 2 4203 4299 583302740 583302836 3.540000e-31 147.0
31 TraesCS7D01G349100 chr3D 93.814 97 4 1 4213 4307 569790791 569790695 1.270000e-30 145.0
32 TraesCS7D01G349100 chr3D 92.473 93 7 0 91 183 338881648 338881556 2.760000e-27 134.0
33 TraesCS7D01G349100 chr3A 91.509 106 7 2 4198 4302 750351098 750350994 1.270000e-30 145.0
34 TraesCS7D01G349100 chr2A 95.455 88 4 0 92 179 715702214 715702127 1.650000e-29 141.0
35 TraesCS7D01G349100 chr2D 91.579 95 8 0 89 183 627260875 627260969 9.920000e-27 132.0
36 TraesCS7D01G349100 chr5B 90.000 100 10 0 85 184 571189359 571189458 3.570000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G349100 chr7D 448854456 448858849 4393 False 8115.000 8115 100.000 1 4394 1 chr7D.!!$F1 4393
1 TraesCS7D01G349100 chr7D 625352869 625355414 2545 True 2494.000 2494 84.588 949 3472 1 chr7D.!!$R3 2523
2 TraesCS7D01G349100 chr7D 625250435 625253056 2621 False 2167.000 2167 81.825 853 3480 1 chr7D.!!$F3 2627
3 TraesCS7D01G349100 chr7A 720861830 720864357 2527 True 2098.000 2098 81.882 949 3476 1 chr7A.!!$R2 2527
4 TraesCS7D01G349100 chr7A 720885032 720887298 2266 False 1991.000 1991 82.786 1144 3391 1 chr7A.!!$F2 2247
5 TraesCS7D01G349100 chr7A 547110779 547114791 4012 True 1512.025 5605 92.949 188 4394 4 chr7A.!!$R3 4206
6 TraesCS7D01G349100 chr7B 466668439 466672086 3647 False 4610.000 4610 89.690 504 4122 1 chr7B.!!$F1 3618
7 TraesCS7D01G349100 chr7B 724953401 724955948 2547 True 2556.000 2556 85.018 949 3472 1 chr7B.!!$R3 2523
8 TraesCS7D01G349100 chr7B 723900427 723903056 2629 True 2106.000 2106 81.386 848 3480 1 chr7B.!!$R2 2632
9 TraesCS7D01G349100 chr7B 723929186 723931630 2444 False 2080.000 2080 82.246 971 3406 1 chr7B.!!$F3 2435
10 TraesCS7D01G349100 chr7B 723835692 723837062 1370 True 1022.000 1022 80.458 1628 3000 1 chr7B.!!$R1 1372
11 TraesCS7D01G349100 chr1B 623547490 623549930 2440 False 2433.000 2433 84.794 926 3357 1 chr1B.!!$F1 2431
12 TraesCS7D01G349100 chr1B 622963657 622964403 746 True 676.000 676 83.158 2834 3587 1 chr1B.!!$R2 753
13 TraesCS7D01G349100 chr1D 453113307 453115754 2447 False 2407.000 2407 84.553 926 3364 1 chr1D.!!$F2 2438
14 TraesCS7D01G349100 chr6A 608491269 608493806 2537 True 2039.000 2039 81.418 949 3481 1 chr6A.!!$R1 2532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.094730 GTGACGACGCTAACAATGGC 59.905 55.000 0.00 0.0 0.00 4.40 F
252 253 0.107410 CGCTAACAATGGCCTGGGTA 60.107 55.000 3.32 0.0 0.00 3.69 F
493 502 0.178984 TAGATCATGCGGACGGGGTA 60.179 55.000 0.00 0.0 0.00 3.69 F
647 656 0.584876 CCACCAAAGGAAACGACGAC 59.415 55.000 0.00 0.0 0.00 4.34 F
653 662 0.748450 AAGGAAACGACGACAGTCCA 59.252 50.000 0.00 0.0 44.28 4.02 F
969 999 1.035139 CTGCAACCAATATGGAGGCC 58.965 55.000 2.85 0.0 40.96 5.19 F
1803 1855 1.135859 GCATTTCAGACCTGCTTCGTG 60.136 52.381 0.00 0.0 33.15 4.35 F
2472 2545 1.933021 ACCACTTCCGGAGATACACA 58.067 50.000 3.34 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1525 0.034089 AATGGAAGCTGTAGTGCCCC 60.034 55.000 0.00 0.00 0.0 5.80 R
1803 1855 2.401583 TCATACCACACAGACCATGC 57.598 50.000 0.00 0.00 0.0 4.06 R
2446 2519 0.323629 CTCCGGAAGTGGTTGGCTAA 59.676 55.000 5.23 0.00 0.0 3.09 R
2449 2522 0.539986 TATCTCCGGAAGTGGTTGGC 59.460 55.000 5.23 0.00 0.0 4.52 R
2571 2644 1.269723 GCCAACCTTTTCACTGCTACC 59.730 52.381 0.00 0.00 0.0 3.18 R
2782 2855 9.595823 AGCAATCTTAAATCTTTCATTCCATTG 57.404 29.630 0.00 0.00 0.0 2.82 R
2979 3052 2.091278 ACCTCTAGTTCCATGGATCCGA 60.091 50.000 17.06 12.78 0.0 4.55 R
4281 4431 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.525912 GCAGAAAGTCCCACATTGAAAT 57.474 40.909 0.00 0.00 0.00 2.17
22 23 4.886579 GCAGAAAGTCCCACATTGAAATT 58.113 39.130 0.00 0.00 0.00 1.82
23 24 5.299949 GCAGAAAGTCCCACATTGAAATTT 58.700 37.500 0.00 0.00 0.00 1.82
24 25 5.178067 GCAGAAAGTCCCACATTGAAATTTG 59.822 40.000 0.00 0.00 0.00 2.32
25 26 6.514947 CAGAAAGTCCCACATTGAAATTTGA 58.485 36.000 0.00 0.00 0.00 2.69
26 27 6.421801 CAGAAAGTCCCACATTGAAATTTGAC 59.578 38.462 0.00 0.00 0.00 3.18
27 28 4.503741 AGTCCCACATTGAAATTTGACG 57.496 40.909 0.00 0.00 0.00 4.35
28 29 2.986479 GTCCCACATTGAAATTTGACGC 59.014 45.455 0.00 0.00 0.00 5.19
29 30 1.984990 CCCACATTGAAATTTGACGCG 59.015 47.619 3.53 3.53 0.00 6.01
30 31 1.984990 CCACATTGAAATTTGACGCGG 59.015 47.619 12.47 0.00 0.00 6.46
31 32 1.386412 CACATTGAAATTTGACGCGGC 59.614 47.619 12.47 8.67 0.00 6.53
32 33 0.634731 CATTGAAATTTGACGCGGCG 59.365 50.000 22.36 22.36 0.00 6.46
33 34 0.519519 ATTGAAATTTGACGCGGCGA 59.480 45.000 30.94 3.40 0.00 5.54
34 35 0.110419 TTGAAATTTGACGCGGCGAG 60.110 50.000 30.94 11.17 0.00 5.03
35 36 0.946700 TGAAATTTGACGCGGCGAGA 60.947 50.000 30.94 11.81 0.00 4.04
36 37 0.518559 GAAATTTGACGCGGCGAGAC 60.519 55.000 30.94 18.80 0.00 3.36
37 38 1.908066 AAATTTGACGCGGCGAGACC 61.908 55.000 30.94 14.60 0.00 3.85
45 46 4.065281 CGGCGAGACCCGTCCTTT 62.065 66.667 0.00 0.00 43.24 3.11
46 47 2.434359 GGCGAGACCCGTCCTTTG 60.434 66.667 0.00 0.00 41.15 2.77
47 48 2.342648 GCGAGACCCGTCCTTTGT 59.657 61.111 0.00 0.00 41.15 2.83
48 49 1.737008 GCGAGACCCGTCCTTTGTC 60.737 63.158 0.00 0.00 41.15 3.18
49 50 1.663739 CGAGACCCGTCCTTTGTCA 59.336 57.895 0.00 0.00 0.00 3.58
50 51 0.246635 CGAGACCCGTCCTTTGTCAT 59.753 55.000 0.00 0.00 0.00 3.06
51 52 1.736032 CGAGACCCGTCCTTTGTCATC 60.736 57.143 0.00 0.00 0.00 2.92
52 53 1.550976 GAGACCCGTCCTTTGTCATCT 59.449 52.381 0.00 0.00 0.00 2.90
53 54 2.758979 GAGACCCGTCCTTTGTCATCTA 59.241 50.000 0.00 0.00 0.00 1.98
54 55 2.496470 AGACCCGTCCTTTGTCATCTAC 59.504 50.000 0.00 0.00 0.00 2.59
55 56 1.203994 ACCCGTCCTTTGTCATCTACG 59.796 52.381 0.00 0.00 0.00 3.51
56 57 1.203994 CCCGTCCTTTGTCATCTACGT 59.796 52.381 0.00 0.00 0.00 3.57
57 58 2.424601 CCCGTCCTTTGTCATCTACGTA 59.575 50.000 0.00 0.00 0.00 3.57
58 59 3.432782 CCGTCCTTTGTCATCTACGTAC 58.567 50.000 0.00 0.00 0.00 3.67
59 60 3.432782 CGTCCTTTGTCATCTACGTACC 58.567 50.000 0.00 0.00 0.00 3.34
60 61 3.432782 GTCCTTTGTCATCTACGTACCG 58.567 50.000 0.00 0.00 0.00 4.02
61 62 2.424601 TCCTTTGTCATCTACGTACCGG 59.575 50.000 0.00 0.00 0.00 5.28
62 63 2.424601 CCTTTGTCATCTACGTACCGGA 59.575 50.000 9.46 0.00 0.00 5.14
63 64 3.488721 CCTTTGTCATCTACGTACCGGAG 60.489 52.174 9.46 0.76 39.48 4.63
76 77 3.786101 CGGAGGAACAGCATCGTG 58.214 61.111 0.00 0.00 0.00 4.35
77 78 1.215382 CGGAGGAACAGCATCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
78 79 1.078759 CGGAGGAACAGCATCGTGAC 61.079 60.000 0.00 0.00 0.00 3.67
79 80 0.247736 GGAGGAACAGCATCGTGACT 59.752 55.000 0.00 0.00 0.00 3.41
80 81 1.354040 GAGGAACAGCATCGTGACTG 58.646 55.000 0.00 0.00 39.86 3.51
81 82 0.969149 AGGAACAGCATCGTGACTGA 59.031 50.000 8.02 0.00 37.35 3.41
82 83 1.344438 AGGAACAGCATCGTGACTGAA 59.656 47.619 8.02 0.00 37.35 3.02
83 84 2.143122 GGAACAGCATCGTGACTGAAA 58.857 47.619 8.02 0.00 37.35 2.69
84 85 2.548057 GGAACAGCATCGTGACTGAAAA 59.452 45.455 8.02 0.00 37.35 2.29
85 86 3.364366 GGAACAGCATCGTGACTGAAAAG 60.364 47.826 8.02 0.00 37.35 2.27
86 87 1.532868 ACAGCATCGTGACTGAAAAGC 59.467 47.619 8.02 0.00 37.35 3.51
87 88 1.802960 CAGCATCGTGACTGAAAAGCT 59.197 47.619 0.00 0.00 35.90 3.74
88 89 2.225019 CAGCATCGTGACTGAAAAGCTT 59.775 45.455 0.00 0.00 35.90 3.74
89 90 2.225019 AGCATCGTGACTGAAAAGCTTG 59.775 45.455 0.00 0.00 0.00 4.01
90 91 2.031682 GCATCGTGACTGAAAAGCTTGT 60.032 45.455 0.00 0.00 0.00 3.16
91 92 3.803555 CATCGTGACTGAAAAGCTTGTC 58.196 45.455 9.90 9.90 0.00 3.18
92 93 2.899976 TCGTGACTGAAAAGCTTGTCA 58.100 42.857 18.37 18.37 37.14 3.58
93 94 3.466836 TCGTGACTGAAAAGCTTGTCAT 58.533 40.909 19.65 10.07 40.78 3.06
94 95 3.248363 TCGTGACTGAAAAGCTTGTCATG 59.752 43.478 19.65 21.10 43.69 3.07
95 96 3.002656 CGTGACTGAAAAGCTTGTCATGT 59.997 43.478 19.65 17.95 40.78 3.21
96 97 4.211164 CGTGACTGAAAAGCTTGTCATGTA 59.789 41.667 19.65 6.30 40.78 2.29
97 98 5.444122 GTGACTGAAAAGCTTGTCATGTAC 58.556 41.667 19.65 13.88 40.78 2.90
98 99 5.237344 GTGACTGAAAAGCTTGTCATGTACT 59.763 40.000 19.65 0.77 40.78 2.73
99 100 5.466728 TGACTGAAAAGCTTGTCATGTACTC 59.533 40.000 19.65 9.75 34.94 2.59
100 101 4.757149 ACTGAAAAGCTTGTCATGTACTCC 59.243 41.667 19.65 0.00 0.00 3.85
101 102 4.072131 TGAAAAGCTTGTCATGTACTCCC 58.928 43.478 15.62 0.00 0.00 4.30
102 103 4.202461 TGAAAAGCTTGTCATGTACTCCCT 60.202 41.667 15.62 0.00 0.00 4.20
103 104 3.618690 AAGCTTGTCATGTACTCCCTC 57.381 47.619 0.00 0.00 0.00 4.30
104 105 1.834263 AGCTTGTCATGTACTCCCTCC 59.166 52.381 0.00 0.00 0.00 4.30
105 106 1.834263 GCTTGTCATGTACTCCCTCCT 59.166 52.381 0.00 0.00 0.00 3.69
106 107 2.237392 GCTTGTCATGTACTCCCTCCTT 59.763 50.000 0.00 0.00 0.00 3.36
107 108 3.680196 GCTTGTCATGTACTCCCTCCTTC 60.680 52.174 0.00 0.00 0.00 3.46
108 109 2.467880 TGTCATGTACTCCCTCCTTCC 58.532 52.381 0.00 0.00 0.00 3.46
109 110 1.763545 GTCATGTACTCCCTCCTTCCC 59.236 57.143 0.00 0.00 0.00 3.97
110 111 1.364678 TCATGTACTCCCTCCTTCCCA 59.635 52.381 0.00 0.00 0.00 4.37
111 112 2.022035 TCATGTACTCCCTCCTTCCCAT 60.022 50.000 0.00 0.00 0.00 4.00
112 113 3.208922 TCATGTACTCCCTCCTTCCCATA 59.791 47.826 0.00 0.00 0.00 2.74
113 114 3.788116 TGTACTCCCTCCTTCCCATAA 57.212 47.619 0.00 0.00 0.00 1.90
114 115 4.295905 TGTACTCCCTCCTTCCCATAAT 57.704 45.455 0.00 0.00 0.00 1.28
115 116 5.427857 TGTACTCCCTCCTTCCCATAATA 57.572 43.478 0.00 0.00 0.00 0.98
116 117 5.989717 TGTACTCCCTCCTTCCCATAATAT 58.010 41.667 0.00 0.00 0.00 1.28
117 118 7.123560 TGTACTCCCTCCTTCCCATAATATA 57.876 40.000 0.00 0.00 0.00 0.86
118 119 7.550042 TGTACTCCCTCCTTCCCATAATATAA 58.450 38.462 0.00 0.00 0.00 0.98
119 120 7.678598 TGTACTCCCTCCTTCCCATAATATAAG 59.321 40.741 0.00 0.00 0.00 1.73
120 121 6.886637 ACTCCCTCCTTCCCATAATATAAGA 58.113 40.000 0.00 0.00 0.00 2.10
121 122 6.962902 ACTCCCTCCTTCCCATAATATAAGAG 59.037 42.308 0.00 0.00 0.00 2.85
122 123 5.726793 TCCCTCCTTCCCATAATATAAGAGC 59.273 44.000 0.00 0.00 0.00 4.09
123 124 5.488919 CCCTCCTTCCCATAATATAAGAGCA 59.511 44.000 0.00 0.00 0.00 4.26
124 125 6.159398 CCCTCCTTCCCATAATATAAGAGCAT 59.841 42.308 0.00 0.00 0.00 3.79
125 126 7.312183 CCCTCCTTCCCATAATATAAGAGCATT 60.312 40.741 0.00 0.00 0.00 3.56
126 127 8.112183 CCTCCTTCCCATAATATAAGAGCATTT 58.888 37.037 0.00 0.00 0.00 2.32
127 128 9.525826 CTCCTTCCCATAATATAAGAGCATTTT 57.474 33.333 0.00 0.00 0.00 1.82
128 129 9.881773 TCCTTCCCATAATATAAGAGCATTTTT 57.118 29.630 0.00 0.00 0.00 1.94
129 130 9.918630 CCTTCCCATAATATAAGAGCATTTTTG 57.081 33.333 0.00 0.00 0.00 2.44
132 133 9.639563 TCCCATAATATAAGAGCATTTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
133 134 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
141 142 7.426929 AAGAGCATTTTTGACACTAGTGTAG 57.573 36.000 27.98 12.67 45.05 2.74
142 143 6.525629 AGAGCATTTTTGACACTAGTGTAGT 58.474 36.000 27.98 6.32 45.05 2.73
155 156 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
156 157 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
157 158 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
158 159 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
159 160 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
160 161 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
161 162 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
162 163 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
163 164 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
166 167 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
167 168 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
168 169 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
169 170 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
185 186 4.210724 TGGGACAAAGGTAGTAATTCCG 57.789 45.455 0.00 0.00 31.92 4.30
186 187 3.839490 TGGGACAAAGGTAGTAATTCCGA 59.161 43.478 0.00 0.00 31.92 4.55
190 191 5.138125 ACAAAGGTAGTAATTCCGAACGA 57.862 39.130 0.00 0.00 0.00 3.85
199 200 2.955477 ATTCCGAACGAAGGGAGTAC 57.045 50.000 0.00 0.00 32.78 2.73
202 203 1.086696 CCGAACGAAGGGAGTACGTA 58.913 55.000 0.00 0.00 39.31 3.57
203 204 1.202076 CCGAACGAAGGGAGTACGTAC 60.202 57.143 18.10 18.10 39.31 3.67
212 213 1.615384 GGGAGTACGTACCTGACCACT 60.615 57.143 21.80 2.23 0.00 4.00
217 218 0.825010 ACGTACCTGACCACTTCCGT 60.825 55.000 0.00 0.00 0.00 4.69
227 228 1.006102 CACTTCCGTTCTCCAGCGT 60.006 57.895 0.00 0.00 0.00 5.07
233 234 2.081212 CGTTCTCCAGCGTGACGAC 61.081 63.158 10.10 0.00 0.00 4.34
245 246 0.094730 GTGACGACGCTAACAATGGC 59.905 55.000 0.00 0.00 0.00 4.40
248 249 1.019278 ACGACGCTAACAATGGCCTG 61.019 55.000 3.32 0.00 0.00 4.85
249 250 1.705337 CGACGCTAACAATGGCCTGG 61.705 60.000 3.32 0.00 0.00 4.45
250 251 1.376609 GACGCTAACAATGGCCTGGG 61.377 60.000 3.32 0.00 0.00 4.45
251 252 1.378514 CGCTAACAATGGCCTGGGT 60.379 57.895 3.32 0.00 0.00 4.51
252 253 0.107410 CGCTAACAATGGCCTGGGTA 60.107 55.000 3.32 0.00 0.00 3.69
253 254 1.680338 GCTAACAATGGCCTGGGTAG 58.320 55.000 3.32 6.94 0.00 3.18
254 255 1.211949 GCTAACAATGGCCTGGGTAGA 59.788 52.381 15.31 0.00 0.00 2.59
255 256 2.919228 CTAACAATGGCCTGGGTAGAC 58.081 52.381 3.32 0.00 0.00 2.59
256 257 0.331616 AACAATGGCCTGGGTAGACC 59.668 55.000 3.32 0.00 40.81 3.85
271 272 2.391926 AGACCCCCGGTTTTGATTTT 57.608 45.000 0.00 0.00 35.25 1.82
307 308 3.751767 TGGGTAGACCACTACGTGT 57.248 52.632 0.00 0.00 46.80 4.49
319 320 1.951602 ACTACGTGTGCACACTGACTA 59.048 47.619 38.81 23.71 44.34 2.59
322 323 2.833794 ACGTGTGCACACTGACTAAAT 58.166 42.857 38.81 17.63 44.34 1.40
327 328 3.189080 TGTGCACACTGACTAAATCATGC 59.811 43.478 17.42 0.00 40.05 4.06
353 357 1.063972 CGCATGTGGCCATAAACCG 59.936 57.895 9.72 7.08 40.31 4.44
356 360 1.067213 GCATGTGGCCATAAACCGTTT 60.067 47.619 9.72 1.40 36.11 3.60
401 409 8.963130 CATTCAACGCTTACATTTTCTTGTAAA 58.037 29.630 0.00 0.00 40.53 2.01
430 439 7.552050 TTATTGGTCCCATGTCATTTTCTTT 57.448 32.000 0.00 0.00 0.00 2.52
431 440 4.870123 TGGTCCCATGTCATTTTCTTTG 57.130 40.909 0.00 0.00 0.00 2.77
433 442 4.898265 TGGTCCCATGTCATTTTCTTTGAA 59.102 37.500 0.00 0.00 0.00 2.69
434 443 5.365025 TGGTCCCATGTCATTTTCTTTGAAA 59.635 36.000 0.00 0.00 0.00 2.69
435 444 6.126940 TGGTCCCATGTCATTTTCTTTGAAAA 60.127 34.615 7.75 7.75 0.00 2.29
436 445 6.765512 GGTCCCATGTCATTTTCTTTGAAAAA 59.234 34.615 9.13 0.00 32.99 1.94
437 446 7.041848 GGTCCCATGTCATTTTCTTTGAAAAAG 60.042 37.037 9.13 5.80 32.04 2.27
438 447 6.991531 TCCCATGTCATTTTCTTTGAAAAAGG 59.008 34.615 9.13 5.79 32.04 3.11
439 448 6.205270 CCCATGTCATTTTCTTTGAAAAAGGG 59.795 38.462 9.13 9.51 32.36 3.95
440 449 6.767423 CCATGTCATTTTCTTTGAAAAAGGGT 59.233 34.615 9.13 0.00 32.36 4.34
441 450 7.254863 CCATGTCATTTTCTTTGAAAAAGGGTG 60.255 37.037 9.13 4.34 32.36 4.61
442 451 6.940739 TGTCATTTTCTTTGAAAAAGGGTGA 58.059 32.000 9.13 6.25 32.36 4.02
443 452 7.041107 TGTCATTTTCTTTGAAAAAGGGTGAG 58.959 34.615 9.13 0.00 32.36 3.51
444 453 6.479990 GTCATTTTCTTTGAAAAAGGGTGAGG 59.520 38.462 9.13 0.00 32.36 3.86
445 454 6.382570 TCATTTTCTTTGAAAAAGGGTGAGGA 59.617 34.615 9.13 0.00 32.36 3.71
446 455 5.592104 TTTCTTTGAAAAAGGGTGAGGAC 57.408 39.130 0.20 0.00 0.00 3.85
447 456 3.211045 TCTTTGAAAAAGGGTGAGGACG 58.789 45.455 0.20 0.00 0.00 4.79
448 457 3.118186 TCTTTGAAAAAGGGTGAGGACGA 60.118 43.478 0.00 0.00 0.00 4.20
449 458 3.502123 TTGAAAAAGGGTGAGGACGAT 57.498 42.857 0.00 0.00 0.00 3.73
450 459 3.053831 TGAAAAAGGGTGAGGACGATC 57.946 47.619 0.00 0.00 0.00 3.69
451 460 2.637872 TGAAAAAGGGTGAGGACGATCT 59.362 45.455 0.00 0.00 0.00 2.75
452 461 2.770164 AAAAGGGTGAGGACGATCTG 57.230 50.000 0.00 0.00 0.00 2.90
453 462 1.645710 AAAGGGTGAGGACGATCTGT 58.354 50.000 0.00 0.00 0.00 3.41
469 478 7.867305 ACGATCTGTCTTTCTATTGAGTAGA 57.133 36.000 0.00 0.00 37.65 2.59
470 479 8.458573 ACGATCTGTCTTTCTATTGAGTAGAT 57.541 34.615 0.00 0.00 39.14 1.98
471 480 9.562408 ACGATCTGTCTTTCTATTGAGTAGATA 57.438 33.333 0.00 0.00 39.14 1.98
484 493 9.715123 CTATTGAGTAGATAAGTAGATCATGCG 57.285 37.037 0.00 0.00 31.71 4.73
485 494 6.502136 TGAGTAGATAAGTAGATCATGCGG 57.498 41.667 0.00 0.00 0.00 5.69
486 495 6.238648 TGAGTAGATAAGTAGATCATGCGGA 58.761 40.000 0.00 0.00 0.00 5.54
487 496 6.149640 TGAGTAGATAAGTAGATCATGCGGAC 59.850 42.308 0.00 0.00 0.00 4.79
488 497 4.427096 AGATAAGTAGATCATGCGGACG 57.573 45.455 0.00 0.00 0.00 4.79
489 498 3.191581 AGATAAGTAGATCATGCGGACGG 59.808 47.826 0.00 0.00 0.00 4.79
490 499 0.389391 AAGTAGATCATGCGGACGGG 59.611 55.000 0.00 0.00 0.00 5.28
491 500 1.006102 GTAGATCATGCGGACGGGG 60.006 63.158 0.00 0.00 0.00 5.73
492 501 1.456892 TAGATCATGCGGACGGGGT 60.457 57.895 0.00 0.00 0.00 4.95
493 502 0.178984 TAGATCATGCGGACGGGGTA 60.179 55.000 0.00 0.00 0.00 3.69
494 503 1.300697 GATCATGCGGACGGGGTAC 60.301 63.158 0.00 0.00 0.00 3.34
557 566 4.583073 GCCTGAAACAAGGGAAAACTCTAA 59.417 41.667 0.00 0.00 37.84 2.10
560 569 6.717084 CCTGAAACAAGGGAAAACTCTAAGAT 59.283 38.462 0.00 0.00 33.28 2.40
569 578 4.396478 GGAAAACTCTAAGATGCTGGAACC 59.604 45.833 0.00 0.00 0.00 3.62
572 581 2.093235 ACTCTAAGATGCTGGAACCTGC 60.093 50.000 14.26 14.26 40.57 4.85
627 636 5.422666 TGCTGACTGAATACAACAAGTTG 57.577 39.130 11.16 11.16 45.58 3.16
641 650 2.093711 ACAAGTTGCCACCAAAGGAAAC 60.094 45.455 1.81 0.00 46.00 2.78
647 656 0.584876 CCACCAAAGGAAACGACGAC 59.415 55.000 0.00 0.00 0.00 4.34
650 659 1.134610 ACCAAAGGAAACGACGACAGT 60.135 47.619 0.00 0.00 0.00 3.55
652 661 1.525619 CAAAGGAAACGACGACAGTCC 59.474 52.381 0.00 2.31 44.28 3.85
653 662 0.748450 AAGGAAACGACGACAGTCCA 59.252 50.000 0.00 0.00 44.28 4.02
745 762 4.759205 ATTTGGACCCGGCAGCCC 62.759 66.667 5.63 0.00 0.00 5.19
786 807 4.005650 CAGCACAGCTTGAGGATAAAGAA 58.994 43.478 0.00 0.00 36.40 2.52
823 846 2.038952 TCATGGAACTGACCAGAACCTG 59.961 50.000 3.76 7.01 43.49 4.00
920 950 3.692593 CAGCATTCACCTGTGATCATTCA 59.307 43.478 0.00 0.00 39.64 2.57
966 996 1.952296 GAGCCTGCAACCAATATGGAG 59.048 52.381 2.85 0.00 40.96 3.86
969 999 1.035139 CTGCAACCAATATGGAGGCC 58.965 55.000 2.85 0.00 40.96 5.19
998 1031 2.569404 CCTCCCTGCTTCTACTGACTTT 59.431 50.000 0.00 0.00 0.00 2.66
1024 1057 3.188786 ATCTGCTTTCGCGCGTCC 61.189 61.111 30.98 16.20 39.65 4.79
1258 1294 4.002506 TGCACACCGACGGCAGAT 62.003 61.111 15.39 0.00 32.95 2.90
1318 1354 5.624344 AAACAATGTCAGCTCTTCATCAG 57.376 39.130 0.00 0.00 0.00 2.90
1439 1482 1.309950 CTGCCCAATCAGAGCATCAG 58.690 55.000 0.00 0.00 37.82 2.90
1482 1525 4.081862 TCCACTCATAGGTTACTTGTTCCG 60.082 45.833 0.00 0.00 0.00 4.30
1543 1586 4.278419 TCTCACTGTTTGACGATGAGAAGA 59.722 41.667 10.07 0.00 38.18 2.87
1803 1855 1.135859 GCATTTCAGACCTGCTTCGTG 60.136 52.381 0.00 0.00 33.15 4.35
2274 2338 7.669427 ACAAATATTTCACTGCAGATTTTCCA 58.331 30.769 23.35 0.00 0.00 3.53
2361 2434 7.186804 CGATATTTTGTGTGGAGGTAATGTTC 58.813 38.462 0.00 0.00 0.00 3.18
2446 2519 2.158842 GCTGAGGTTGGCTATGAGATGT 60.159 50.000 0.00 0.00 0.00 3.06
2449 2522 5.282055 TGAGGTTGGCTATGAGATGTTAG 57.718 43.478 0.00 0.00 0.00 2.34
2472 2545 1.933021 ACCACTTCCGGAGATACACA 58.067 50.000 3.34 0.00 0.00 3.72
2773 2846 4.254492 GTTTAGTAGAAAGGGCTCACAGG 58.746 47.826 0.00 0.00 0.00 4.00
2782 2855 4.489306 AAGGGCTCACAGGTATTACTTC 57.511 45.455 0.00 0.00 0.00 3.01
2979 3052 5.422012 GGGTGGATCCAACAAAAATGTATCT 59.578 40.000 30.61 0.00 38.11 1.98
3288 3373 3.890756 TGATCAAGTTGGCTGTTTCATGT 59.109 39.130 2.34 0.00 0.00 3.21
3365 3455 1.527034 TCAGTTGATGAAGCCAGTGC 58.473 50.000 0.00 0.00 34.02 4.40
3534 3649 4.552166 ATTTTCAGTTTCGACCACACTG 57.448 40.909 6.83 6.83 39.51 3.66
3587 3702 4.875544 TTTGTGGAATCGTTATGCTAGC 57.124 40.909 8.10 8.10 0.00 3.42
3661 3777 4.375908 GCACAATATTTTCACGTTTGTGGC 60.376 41.667 21.85 13.66 46.42 5.01
3664 3780 6.584184 CACAATATTTTCACGTTTGTGGCATA 59.416 34.615 15.81 0.00 46.42 3.14
3750 3896 7.589958 TTCAGATCTAGTGAATCTTAGGACC 57.410 40.000 0.00 0.00 0.00 4.46
3775 3921 4.046938 TGTTTGCAAGCAAATTCCGTTA 57.953 36.364 21.43 0.00 45.90 3.18
3814 3960 1.004745 TCCAGGAGGCAAGGTCAATTC 59.995 52.381 0.00 0.00 33.74 2.17
3823 3969 3.365364 GGCAAGGTCAATTCTTCAAGACG 60.365 47.826 0.00 0.00 31.93 4.18
3869 4015 7.596749 AACAATACATAGTTCAGTCCTTTCG 57.403 36.000 0.00 0.00 0.00 3.46
4166 4316 1.885560 TGGCGATTTTGAGAAACGGA 58.114 45.000 0.00 0.00 0.00 4.69
4171 4321 4.039032 GCGATTTTGAGAAACGGACAAAA 58.961 39.130 0.00 0.00 43.91 2.44
4223 4373 9.877178 ATTATTTCTTGCTATATACTCCTTCCG 57.123 33.333 0.00 0.00 0.00 4.30
4224 4374 6.726490 TTTCTTGCTATATACTCCTTCCGT 57.274 37.500 0.00 0.00 0.00 4.69
4225 4375 5.961396 TCTTGCTATATACTCCTTCCGTC 57.039 43.478 0.00 0.00 0.00 4.79
4226 4376 4.765856 TCTTGCTATATACTCCTTCCGTCC 59.234 45.833 0.00 0.00 0.00 4.79
4227 4377 3.428532 TGCTATATACTCCTTCCGTCCC 58.571 50.000 0.00 0.00 0.00 4.46
4228 4378 3.181426 TGCTATATACTCCTTCCGTCCCA 60.181 47.826 0.00 0.00 0.00 4.37
4229 4379 4.024670 GCTATATACTCCTTCCGTCCCAT 58.975 47.826 0.00 0.00 0.00 4.00
4230 4380 5.198965 GCTATATACTCCTTCCGTCCCATA 58.801 45.833 0.00 0.00 0.00 2.74
4231 4381 5.655532 GCTATATACTCCTTCCGTCCCATAA 59.344 44.000 0.00 0.00 0.00 1.90
4232 4382 6.324254 GCTATATACTCCTTCCGTCCCATAAT 59.676 42.308 0.00 0.00 0.00 1.28
4233 4383 7.504911 GCTATATACTCCTTCCGTCCCATAATA 59.495 40.741 0.00 0.00 0.00 0.98
4234 4384 9.589461 CTATATACTCCTTCCGTCCCATAATAT 57.411 37.037 0.00 0.00 0.00 1.28
4236 4386 9.947189 ATATACTCCTTCCGTCCCATAATATAA 57.053 33.333 0.00 0.00 0.00 0.98
4237 4387 6.607004 ACTCCTTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
4238 4388 6.320518 ACTCCTTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
4239 4389 6.785963 ACTCCTTCCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
4240 4390 7.001099 TCCTTCCGTCCCATAATATAAGAAC 57.999 40.000 0.00 0.00 0.00 3.01
4241 4391 5.867716 CCTTCCGTCCCATAATATAAGAACG 59.132 44.000 0.00 0.00 0.00 3.95
4242 4392 6.409524 TTCCGTCCCATAATATAAGAACGT 57.590 37.500 0.00 0.00 0.00 3.99
4243 4393 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4244 4394 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
4245 4395 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
4246 4396 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
4289 4439 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4290 4440 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4291 4441 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
4292 4442 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
4293 4443 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
4294 4444 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
4298 4448 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
4390 4545 7.914465 TGCGTCTCTTTAAATTTGCAATTTTT 58.086 26.923 20.75 15.83 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.525912 ATTTCAATGTGGGACTTTCTGC 57.474 40.909 0.00 0.00 0.00 4.26
1 2 6.421801 GTCAAATTTCAATGTGGGACTTTCTG 59.578 38.462 0.00 0.00 0.00 3.02
3 4 5.402270 CGTCAAATTTCAATGTGGGACTTTC 59.598 40.000 0.00 0.00 0.00 2.62
4 5 5.288804 CGTCAAATTTCAATGTGGGACTTT 58.711 37.500 0.00 0.00 0.00 2.66
5 6 4.795962 GCGTCAAATTTCAATGTGGGACTT 60.796 41.667 0.00 0.00 0.00 3.01
7 8 2.986479 GCGTCAAATTTCAATGTGGGAC 59.014 45.455 0.00 0.00 0.00 4.46
8 9 2.351253 CGCGTCAAATTTCAATGTGGGA 60.351 45.455 0.00 0.00 0.00 4.37
9 10 1.984990 CGCGTCAAATTTCAATGTGGG 59.015 47.619 0.00 0.00 0.00 4.61
10 11 1.984990 CCGCGTCAAATTTCAATGTGG 59.015 47.619 4.92 7.26 0.00 4.17
11 12 1.386412 GCCGCGTCAAATTTCAATGTG 59.614 47.619 4.92 0.00 0.00 3.21
12 13 1.696988 GCCGCGTCAAATTTCAATGT 58.303 45.000 4.92 0.00 0.00 2.71
13 14 0.634731 CGCCGCGTCAAATTTCAATG 59.365 50.000 4.92 0.00 0.00 2.82
14 15 0.519519 TCGCCGCGTCAAATTTCAAT 59.480 45.000 13.39 0.00 0.00 2.57
15 16 0.110419 CTCGCCGCGTCAAATTTCAA 60.110 50.000 13.39 0.00 0.00 2.69
16 17 0.946700 TCTCGCCGCGTCAAATTTCA 60.947 50.000 13.39 0.00 0.00 2.69
17 18 0.518559 GTCTCGCCGCGTCAAATTTC 60.519 55.000 13.39 0.00 0.00 2.17
18 19 1.495951 GTCTCGCCGCGTCAAATTT 59.504 52.632 13.39 0.00 0.00 1.82
19 20 2.388232 GGTCTCGCCGCGTCAAATT 61.388 57.895 13.39 0.00 0.00 1.82
20 21 2.813908 GGTCTCGCCGCGTCAAAT 60.814 61.111 13.39 0.00 0.00 2.32
28 29 4.065281 AAAGGACGGGTCTCGCCG 62.065 66.667 0.00 0.00 43.89 6.46
29 30 2.434359 CAAAGGACGGGTCTCGCC 60.434 66.667 0.00 0.00 43.89 5.54
30 31 1.737008 GACAAAGGACGGGTCTCGC 60.737 63.158 0.00 0.00 43.89 5.03
31 32 0.246635 ATGACAAAGGACGGGTCTCG 59.753 55.000 0.00 0.00 45.88 4.04
32 33 1.550976 AGATGACAAAGGACGGGTCTC 59.449 52.381 0.00 0.00 32.84 3.36
33 34 1.645710 AGATGACAAAGGACGGGTCT 58.354 50.000 0.00 0.00 32.84 3.85
34 35 2.734492 CGTAGATGACAAAGGACGGGTC 60.734 54.545 0.00 0.00 0.00 4.46
35 36 1.203994 CGTAGATGACAAAGGACGGGT 59.796 52.381 0.00 0.00 0.00 5.28
36 37 1.203994 ACGTAGATGACAAAGGACGGG 59.796 52.381 0.00 0.00 34.72 5.28
37 38 2.649331 ACGTAGATGACAAAGGACGG 57.351 50.000 0.00 0.00 34.72 4.79
38 39 3.432782 GGTACGTAGATGACAAAGGACG 58.567 50.000 0.00 0.00 36.42 4.79
55 56 0.527817 CGATGCTGTTCCTCCGGTAC 60.528 60.000 0.00 0.00 0.00 3.34
56 57 0.968901 ACGATGCTGTTCCTCCGGTA 60.969 55.000 0.00 0.00 0.00 4.02
57 58 2.283529 ACGATGCTGTTCCTCCGGT 61.284 57.895 0.00 0.00 0.00 5.28
58 59 1.811266 CACGATGCTGTTCCTCCGG 60.811 63.158 0.00 0.00 0.00 5.14
59 60 1.078759 GTCACGATGCTGTTCCTCCG 61.079 60.000 0.00 0.00 0.00 4.63
60 61 0.247736 AGTCACGATGCTGTTCCTCC 59.752 55.000 0.00 0.00 0.00 4.30
61 62 1.067565 TCAGTCACGATGCTGTTCCTC 60.068 52.381 0.00 0.00 34.57 3.71
62 63 0.969149 TCAGTCACGATGCTGTTCCT 59.031 50.000 0.00 0.00 34.57 3.36
63 64 1.795768 TTCAGTCACGATGCTGTTCC 58.204 50.000 0.00 0.00 34.57 3.62
64 65 3.803555 CTTTTCAGTCACGATGCTGTTC 58.196 45.455 0.00 0.00 34.57 3.18
65 66 2.031682 GCTTTTCAGTCACGATGCTGTT 60.032 45.455 0.00 0.00 34.57 3.16
66 67 1.532868 GCTTTTCAGTCACGATGCTGT 59.467 47.619 0.00 0.00 34.57 4.40
67 68 1.802960 AGCTTTTCAGTCACGATGCTG 59.197 47.619 0.00 0.00 0.00 4.41
68 69 2.175878 AGCTTTTCAGTCACGATGCT 57.824 45.000 0.00 0.00 0.00 3.79
69 70 2.031682 ACAAGCTTTTCAGTCACGATGC 60.032 45.455 0.00 0.00 0.00 3.91
70 71 3.248363 TGACAAGCTTTTCAGTCACGATG 59.752 43.478 11.24 0.00 36.20 3.84
71 72 3.466836 TGACAAGCTTTTCAGTCACGAT 58.533 40.909 11.24 0.00 36.20 3.73
72 73 2.899976 TGACAAGCTTTTCAGTCACGA 58.100 42.857 11.24 0.00 36.20 4.35
73 74 3.002656 ACATGACAAGCTTTTCAGTCACG 59.997 43.478 19.32 13.73 43.01 4.35
74 75 4.558538 ACATGACAAGCTTTTCAGTCAC 57.441 40.909 19.32 0.00 43.01 3.67
75 76 5.368145 AGTACATGACAAGCTTTTCAGTCA 58.632 37.500 19.32 18.03 44.16 3.41
76 77 5.106908 GGAGTACATGACAAGCTTTTCAGTC 60.107 44.000 19.32 13.34 0.00 3.51
77 78 4.757149 GGAGTACATGACAAGCTTTTCAGT 59.243 41.667 19.32 17.67 0.00 3.41
78 79 4.154918 GGGAGTACATGACAAGCTTTTCAG 59.845 45.833 19.32 13.67 0.00 3.02
79 80 4.072131 GGGAGTACATGACAAGCTTTTCA 58.928 43.478 17.16 17.16 0.00 2.69
80 81 4.327680 AGGGAGTACATGACAAGCTTTTC 58.672 43.478 5.63 5.63 0.00 2.29
81 82 4.327680 GAGGGAGTACATGACAAGCTTTT 58.672 43.478 0.00 0.00 0.00 2.27
82 83 3.307762 GGAGGGAGTACATGACAAGCTTT 60.308 47.826 0.00 0.00 0.00 3.51
83 84 2.237392 GGAGGGAGTACATGACAAGCTT 59.763 50.000 0.00 0.00 0.00 3.74
84 85 1.834263 GGAGGGAGTACATGACAAGCT 59.166 52.381 0.00 0.00 0.00 3.74
85 86 1.834263 AGGAGGGAGTACATGACAAGC 59.166 52.381 0.00 0.00 0.00 4.01
86 87 3.118592 GGAAGGAGGGAGTACATGACAAG 60.119 52.174 0.00 0.00 0.00 3.16
87 88 2.838202 GGAAGGAGGGAGTACATGACAA 59.162 50.000 0.00 0.00 0.00 3.18
88 89 2.467880 GGAAGGAGGGAGTACATGACA 58.532 52.381 0.00 0.00 0.00 3.58
89 90 1.763545 GGGAAGGAGGGAGTACATGAC 59.236 57.143 0.00 0.00 0.00 3.06
90 91 1.364678 TGGGAAGGAGGGAGTACATGA 59.635 52.381 0.00 0.00 0.00 3.07
91 92 1.879575 TGGGAAGGAGGGAGTACATG 58.120 55.000 0.00 0.00 0.00 3.21
92 93 2.897823 ATGGGAAGGAGGGAGTACAT 57.102 50.000 0.00 0.00 0.00 2.29
93 94 3.788116 TTATGGGAAGGAGGGAGTACA 57.212 47.619 0.00 0.00 0.00 2.90
94 95 7.899709 TCTTATATTATGGGAAGGAGGGAGTAC 59.100 40.741 0.00 0.00 0.00 2.73
95 96 8.019537 TCTTATATTATGGGAAGGAGGGAGTA 57.980 38.462 0.00 0.00 0.00 2.59
96 97 6.886637 TCTTATATTATGGGAAGGAGGGAGT 58.113 40.000 0.00 0.00 0.00 3.85
97 98 6.126911 GCTCTTATATTATGGGAAGGAGGGAG 60.127 46.154 0.00 0.00 0.00 4.30
98 99 5.726793 GCTCTTATATTATGGGAAGGAGGGA 59.273 44.000 0.00 0.00 0.00 4.20
99 100 5.488919 TGCTCTTATATTATGGGAAGGAGGG 59.511 44.000 0.00 0.00 0.00 4.30
100 101 6.627087 TGCTCTTATATTATGGGAAGGAGG 57.373 41.667 0.00 0.00 0.00 4.30
101 102 9.525826 AAAATGCTCTTATATTATGGGAAGGAG 57.474 33.333 0.00 0.00 0.00 3.69
102 103 9.881773 AAAAATGCTCTTATATTATGGGAAGGA 57.118 29.630 0.00 0.00 0.00 3.36
103 104 9.918630 CAAAAATGCTCTTATATTATGGGAAGG 57.081 33.333 0.00 0.00 0.00 3.46
106 107 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
107 108 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
113 114 9.672673 ACACTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 22.95 0.00 40.24 0.86
115 116 7.986085 ACACTAGTGTCAAAAATGCTCTTAT 57.014 32.000 22.95 0.00 40.24 1.73
116 117 8.148351 ACTACACTAGTGTCAAAAATGCTCTTA 58.852 33.333 31.11 8.36 43.74 2.10
117 118 6.992715 ACTACACTAGTGTCAAAAATGCTCTT 59.007 34.615 31.11 4.99 43.74 2.85
118 119 6.525629 ACTACACTAGTGTCAAAAATGCTCT 58.474 36.000 31.11 5.44 43.74 4.09
119 120 6.787085 ACTACACTAGTGTCAAAAATGCTC 57.213 37.500 31.11 0.00 43.74 4.26
132 133 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
133 134 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
134 135 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
135 136 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
136 137 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
137 138 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
140 141 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
141 142 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
142 143 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
143 144 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
144 145 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
145 146 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
146 147 8.514330 TTGTCCCATAATATAAGAGCGTTTTT 57.486 30.769 0.00 0.00 0.00 1.94
147 148 8.514330 TTTGTCCCATAATATAAGAGCGTTTT 57.486 30.769 0.00 0.00 0.00 2.43
148 149 7.228706 CCTTTGTCCCATAATATAAGAGCGTTT 59.771 37.037 0.00 0.00 0.00 3.60
149 150 6.710744 CCTTTGTCCCATAATATAAGAGCGTT 59.289 38.462 0.00 0.00 0.00 4.84
150 151 6.183361 ACCTTTGTCCCATAATATAAGAGCGT 60.183 38.462 0.00 0.00 0.00 5.07
151 152 6.231211 ACCTTTGTCCCATAATATAAGAGCG 58.769 40.000 0.00 0.00 0.00 5.03
152 153 8.376270 ACTACCTTTGTCCCATAATATAAGAGC 58.624 37.037 0.00 0.00 0.00 4.09
159 160 8.152246 CGGAATTACTACCTTTGTCCCATAATA 58.848 37.037 0.00 0.00 0.00 0.98
160 161 6.996282 CGGAATTACTACCTTTGTCCCATAAT 59.004 38.462 0.00 0.00 0.00 1.28
161 162 6.156602 TCGGAATTACTACCTTTGTCCCATAA 59.843 38.462 0.00 0.00 0.00 1.90
162 163 5.662208 TCGGAATTACTACCTTTGTCCCATA 59.338 40.000 0.00 0.00 0.00 2.74
163 164 4.472108 TCGGAATTACTACCTTTGTCCCAT 59.528 41.667 0.00 0.00 0.00 4.00
164 165 3.839490 TCGGAATTACTACCTTTGTCCCA 59.161 43.478 0.00 0.00 0.00 4.37
165 166 4.476628 TCGGAATTACTACCTTTGTCCC 57.523 45.455 0.00 0.00 0.00 4.46
166 167 4.328169 CGTTCGGAATTACTACCTTTGTCC 59.672 45.833 0.00 0.00 0.00 4.02
167 168 5.163513 TCGTTCGGAATTACTACCTTTGTC 58.836 41.667 0.00 0.00 0.00 3.18
168 169 5.138125 TCGTTCGGAATTACTACCTTTGT 57.862 39.130 0.00 0.00 0.00 2.83
169 170 5.063060 CCTTCGTTCGGAATTACTACCTTTG 59.937 44.000 0.00 0.00 33.26 2.77
170 171 5.173664 CCTTCGTTCGGAATTACTACCTTT 58.826 41.667 0.00 0.00 33.26 3.11
171 172 4.382362 CCCTTCGTTCGGAATTACTACCTT 60.382 45.833 0.00 0.00 33.26 3.50
172 173 3.131755 CCCTTCGTTCGGAATTACTACCT 59.868 47.826 0.00 0.00 33.26 3.08
173 174 3.131046 TCCCTTCGTTCGGAATTACTACC 59.869 47.826 0.00 0.00 33.26 3.18
174 175 4.142293 ACTCCCTTCGTTCGGAATTACTAC 60.142 45.833 0.00 0.00 33.26 2.73
175 176 4.019174 ACTCCCTTCGTTCGGAATTACTA 58.981 43.478 0.00 0.00 33.26 1.82
176 177 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
177 178 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
178 179 3.181497 CGTACTCCCTTCGTTCGGAATTA 60.181 47.826 0.00 0.00 33.26 1.40
179 180 2.416431 CGTACTCCCTTCGTTCGGAATT 60.416 50.000 0.00 0.00 33.26 2.17
180 181 1.133790 CGTACTCCCTTCGTTCGGAAT 59.866 52.381 0.00 0.00 33.26 3.01
181 182 0.523072 CGTACTCCCTTCGTTCGGAA 59.477 55.000 0.00 0.00 0.00 4.30
182 183 0.606401 ACGTACTCCCTTCGTTCGGA 60.606 55.000 0.00 0.00 34.07 4.55
183 184 1.086696 TACGTACTCCCTTCGTTCGG 58.913 55.000 0.00 0.00 38.69 4.30
184 185 1.202076 GGTACGTACTCCCTTCGTTCG 60.202 57.143 24.07 0.00 38.69 3.95
185 186 2.087646 AGGTACGTACTCCCTTCGTTC 58.912 52.381 24.07 4.60 38.69 3.95
186 187 1.815003 CAGGTACGTACTCCCTTCGTT 59.185 52.381 24.07 0.00 38.69 3.85
190 191 1.076024 TGGTCAGGTACGTACTCCCTT 59.924 52.381 24.07 3.93 0.00 3.95
199 200 1.962144 ACGGAAGTGGTCAGGTACG 59.038 57.895 0.00 0.00 46.97 3.67
212 213 1.006571 GTCACGCTGGAGAACGGAA 60.007 57.895 0.00 0.00 0.00 4.30
217 218 2.254350 CGTCGTCACGCTGGAGAA 59.746 61.111 0.00 0.00 39.69 2.87
227 228 1.017177 GGCCATTGTTAGCGTCGTCA 61.017 55.000 0.00 0.00 0.00 4.35
233 234 0.107410 TACCCAGGCCATTGTTAGCG 60.107 55.000 5.01 0.00 0.00 4.26
249 250 0.622136 ATCAAAACCGGGGGTCTACC 59.378 55.000 6.32 0.00 33.12 3.18
250 251 2.502142 AATCAAAACCGGGGGTCTAC 57.498 50.000 6.32 0.00 33.12 2.59
251 252 3.529216 AAAATCAAAACCGGGGGTCTA 57.471 42.857 6.32 0.00 33.12 2.59
252 253 2.367241 CAAAAATCAAAACCGGGGGTCT 59.633 45.455 6.32 0.00 33.12 3.85
253 254 2.365941 TCAAAAATCAAAACCGGGGGTC 59.634 45.455 6.32 0.00 33.12 4.46
254 255 2.399580 TCAAAAATCAAAACCGGGGGT 58.600 42.857 6.32 0.00 37.65 4.95
255 256 3.070302 TCTTCAAAAATCAAAACCGGGGG 59.930 43.478 6.32 0.00 0.00 5.40
256 257 4.329462 TCTTCAAAAATCAAAACCGGGG 57.671 40.909 6.32 0.00 0.00 5.73
257 258 6.670077 TTTTCTTCAAAAATCAAAACCGGG 57.330 33.333 6.32 0.00 0.00 5.73
258 259 7.969314 TCTTTTTCTTCAAAAATCAAAACCGG 58.031 30.769 0.00 0.00 40.07 5.28
259 260 9.818796 TTTCTTTTTCTTCAAAAATCAAAACCG 57.181 25.926 0.00 0.00 40.07 4.44
271 272 8.194769 GTCTACCCATTGTTTCTTTTTCTTCAA 58.805 33.333 0.00 0.00 0.00 2.69
307 308 2.416202 CGCATGATTTAGTCAGTGTGCA 59.584 45.455 0.00 0.00 39.30 4.57
319 320 4.463597 CGCTGCAACGCATGATTT 57.536 50.000 0.00 0.00 38.13 2.17
356 360 9.474920 GTTGAATGTTGATTCATACAGGAAAAA 57.525 29.630 0.00 0.00 45.91 1.94
362 366 5.872635 AGCGTTGAATGTTGATTCATACAG 58.127 37.500 0.00 0.00 45.91 2.74
409 418 4.898265 TCAAAGAAAATGACATGGGACCAA 59.102 37.500 0.00 0.00 0.00 3.67
430 439 2.637872 AGATCGTCCTCACCCTTTTTCA 59.362 45.455 0.00 0.00 0.00 2.69
431 440 3.003480 CAGATCGTCCTCACCCTTTTTC 58.997 50.000 0.00 0.00 0.00 2.29
433 442 1.978580 ACAGATCGTCCTCACCCTTTT 59.021 47.619 0.00 0.00 0.00 2.27
434 443 1.550976 GACAGATCGTCCTCACCCTTT 59.449 52.381 6.47 0.00 38.85 3.11
435 444 1.187087 GACAGATCGTCCTCACCCTT 58.813 55.000 6.47 0.00 38.85 3.95
436 445 0.333312 AGACAGATCGTCCTCACCCT 59.667 55.000 12.17 0.00 46.69 4.34
437 446 1.187087 AAGACAGATCGTCCTCACCC 58.813 55.000 12.17 0.00 46.69 4.61
438 447 2.494073 AGAAAGACAGATCGTCCTCACC 59.506 50.000 12.17 1.83 46.69 4.02
439 448 3.859411 AGAAAGACAGATCGTCCTCAC 57.141 47.619 12.17 4.79 46.69 3.51
440 449 5.652452 TCAATAGAAAGACAGATCGTCCTCA 59.348 40.000 12.17 4.40 46.69 3.86
441 450 6.137794 TCAATAGAAAGACAGATCGTCCTC 57.862 41.667 12.17 9.99 46.69 3.71
442 451 5.654650 ACTCAATAGAAAGACAGATCGTCCT 59.345 40.000 12.17 6.97 46.69 3.85
443 452 5.897050 ACTCAATAGAAAGACAGATCGTCC 58.103 41.667 12.17 1.15 46.69 4.79
444 453 7.921787 TCTACTCAATAGAAAGACAGATCGTC 58.078 38.462 8.94 8.94 39.84 4.20
445 454 7.867305 TCTACTCAATAGAAAGACAGATCGT 57.133 36.000 0.00 0.00 36.95 3.73
458 467 9.715123 CGCATGATCTACTTATCTACTCAATAG 57.285 37.037 0.00 0.00 0.00 1.73
459 468 8.678199 CCGCATGATCTACTTATCTACTCAATA 58.322 37.037 0.00 0.00 0.00 1.90
460 469 7.394641 TCCGCATGATCTACTTATCTACTCAAT 59.605 37.037 0.00 0.00 0.00 2.57
461 470 6.715264 TCCGCATGATCTACTTATCTACTCAA 59.285 38.462 0.00 0.00 0.00 3.02
462 471 6.149640 GTCCGCATGATCTACTTATCTACTCA 59.850 42.308 0.00 0.00 0.00 3.41
463 472 6.548171 GTCCGCATGATCTACTTATCTACTC 58.452 44.000 0.00 0.00 0.00 2.59
464 473 5.122554 CGTCCGCATGATCTACTTATCTACT 59.877 44.000 0.00 0.00 0.00 2.57
465 474 5.325494 CGTCCGCATGATCTACTTATCTAC 58.675 45.833 0.00 0.00 0.00 2.59
466 475 4.395231 CCGTCCGCATGATCTACTTATCTA 59.605 45.833 0.00 0.00 0.00 1.98
467 476 3.191581 CCGTCCGCATGATCTACTTATCT 59.808 47.826 0.00 0.00 0.00 1.98
468 477 3.502920 CCGTCCGCATGATCTACTTATC 58.497 50.000 0.00 0.00 0.00 1.75
469 478 2.231478 CCCGTCCGCATGATCTACTTAT 59.769 50.000 0.00 0.00 0.00 1.73
470 479 1.611977 CCCGTCCGCATGATCTACTTA 59.388 52.381 0.00 0.00 0.00 2.24
471 480 0.389391 CCCGTCCGCATGATCTACTT 59.611 55.000 0.00 0.00 0.00 2.24
472 481 1.464376 CCCCGTCCGCATGATCTACT 61.464 60.000 0.00 0.00 0.00 2.57
473 482 1.006102 CCCCGTCCGCATGATCTAC 60.006 63.158 0.00 0.00 0.00 2.59
474 483 0.178984 TACCCCGTCCGCATGATCTA 60.179 55.000 0.00 0.00 0.00 1.98
475 484 1.456892 TACCCCGTCCGCATGATCT 60.457 57.895 0.00 0.00 0.00 2.75
476 485 1.300697 GTACCCCGTCCGCATGATC 60.301 63.158 0.00 0.00 0.00 2.92
477 486 2.819550 GTACCCCGTCCGCATGAT 59.180 61.111 0.00 0.00 0.00 2.45
478 487 3.829044 CGTACCCCGTCCGCATGA 61.829 66.667 0.00 0.00 0.00 3.07
479 488 4.884257 CCGTACCCCGTCCGCATG 62.884 72.222 0.00 0.00 33.66 4.06
481 490 4.731729 TACCGTACCCCGTCCGCA 62.732 66.667 0.00 0.00 33.66 5.69
482 491 3.000693 TTTACCGTACCCCGTCCGC 62.001 63.158 0.00 0.00 33.66 5.54
483 492 1.153842 GTTTACCGTACCCCGTCCG 60.154 63.158 0.00 0.00 33.66 4.79
484 493 0.536724 ATGTTTACCGTACCCCGTCC 59.463 55.000 0.00 0.00 33.66 4.79
485 494 3.733443 ATATGTTTACCGTACCCCGTC 57.267 47.619 0.00 0.00 33.66 4.79
486 495 4.081198 TGAAATATGTTTACCGTACCCCGT 60.081 41.667 0.00 0.00 33.66 5.28
487 496 4.440880 TGAAATATGTTTACCGTACCCCG 58.559 43.478 0.00 0.00 0.00 5.73
488 497 4.818005 CCTGAAATATGTTTACCGTACCCC 59.182 45.833 0.00 0.00 0.00 4.95
489 498 5.525012 GTCCTGAAATATGTTTACCGTACCC 59.475 44.000 0.00 0.00 0.00 3.69
490 499 6.343703 AGTCCTGAAATATGTTTACCGTACC 58.656 40.000 0.00 0.00 0.00 3.34
493 502 8.698210 TGTATAGTCCTGAAATATGTTTACCGT 58.302 33.333 0.00 0.00 0.00 4.83
494 503 8.975439 GTGTATAGTCCTGAAATATGTTTACCG 58.025 37.037 0.00 0.00 0.00 4.02
495 504 9.269453 GGTGTATAGTCCTGAAATATGTTTACC 57.731 37.037 0.00 0.00 0.00 2.85
496 505 9.826574 TGGTGTATAGTCCTGAAATATGTTTAC 57.173 33.333 0.00 0.00 0.00 2.01
498 507 7.499232 GCTGGTGTATAGTCCTGAAATATGTTT 59.501 37.037 0.00 0.00 0.00 2.83
499 508 6.992715 GCTGGTGTATAGTCCTGAAATATGTT 59.007 38.462 4.83 0.00 0.00 2.71
500 509 6.464465 GGCTGGTGTATAGTCCTGAAATATGT 60.464 42.308 4.83 0.00 0.00 2.29
501 510 5.934625 GGCTGGTGTATAGTCCTGAAATATG 59.065 44.000 4.83 0.00 0.00 1.78
502 511 5.606749 TGGCTGGTGTATAGTCCTGAAATAT 59.393 40.000 4.83 0.00 0.00 1.28
503 512 4.966168 TGGCTGGTGTATAGTCCTGAAATA 59.034 41.667 4.83 0.00 0.00 1.40
557 566 0.111061 TGTTGCAGGTTCCAGCATCT 59.889 50.000 9.55 0.00 40.94 2.90
560 569 1.077140 TGTGTTGCAGGTTCCAGCA 60.077 52.632 4.85 4.85 39.32 4.41
569 578 0.940126 GTGTGGTCTCTGTGTTGCAG 59.060 55.000 0.00 0.00 46.34 4.41
572 581 1.138859 TCCTGTGTGGTCTCTGTGTTG 59.861 52.381 0.00 0.00 37.07 3.33
575 584 2.828520 ACTATCCTGTGTGGTCTCTGTG 59.171 50.000 0.00 0.00 37.07 3.66
627 636 1.161563 TCGTCGTTTCCTTTGGTGGC 61.162 55.000 0.00 0.00 0.00 5.01
641 650 2.176055 CTCGGTGGACTGTCGTCG 59.824 66.667 1.07 5.82 41.16 5.12
647 656 1.216710 GCCTTCTCTCGGTGGACTG 59.783 63.158 0.00 0.00 0.00 3.51
650 659 1.342076 ACATAGCCTTCTCTCGGTGGA 60.342 52.381 0.00 0.00 0.00 4.02
652 661 1.804372 GCACATAGCCTTCTCTCGGTG 60.804 57.143 0.00 0.00 37.23 4.94
653 662 0.461961 GCACATAGCCTTCTCTCGGT 59.538 55.000 0.00 0.00 37.23 4.69
678 692 1.180029 GCAGCATGGACTCCATTGTT 58.820 50.000 7.95 0.16 42.23 2.83
679 693 0.038599 TGCAGCATGGACTCCATTGT 59.961 50.000 7.95 0.00 42.23 2.71
680 694 1.179152 TTGCAGCATGGACTCCATTG 58.821 50.000 7.95 6.61 42.23 2.82
681 695 1.822990 CTTTGCAGCATGGACTCCATT 59.177 47.619 7.95 0.00 42.23 3.16
682 696 1.471119 CTTTGCAGCATGGACTCCAT 58.529 50.000 4.55 4.55 46.37 3.41
786 807 8.950210 CAGTTCCATGAATAGTTAGTTGTGAAT 58.050 33.333 0.00 0.00 0.00 2.57
920 950 3.823304 GCACTCAGGTTGATCTTTCCTTT 59.177 43.478 0.00 0.00 0.00 3.11
1248 1284 1.497278 CACAACCAATCTGCCGTCG 59.503 57.895 0.00 0.00 0.00 5.12
1258 1294 4.141287 CCATTGTAGTCTTCCACAACCAA 58.859 43.478 0.00 0.00 37.47 3.67
1453 1496 3.769844 AGTAACCTATGAGTGGACACCAG 59.230 47.826 0.00 0.00 32.34 4.00
1482 1525 0.034089 AATGGAAGCTGTAGTGCCCC 60.034 55.000 0.00 0.00 0.00 5.80
1543 1586 8.593945 TTTGGCCAATAGATAAAAGAGATGTT 57.406 30.769 21.26 0.00 0.00 2.71
1597 1640 3.437741 GTGGTGGTACTAAATGGGTTTCG 59.562 47.826 0.00 0.00 0.00 3.46
1803 1855 2.401583 TCATACCACACAGACCATGC 57.598 50.000 0.00 0.00 0.00 4.06
1936 1990 4.081309 CACAAATTTCATCTCCTGCCCATT 60.081 41.667 0.00 0.00 0.00 3.16
2274 2338 5.843421 ACTCTGATTGCTCTTGGGTATATCT 59.157 40.000 0.00 0.00 0.00 1.98
2446 2519 0.323629 CTCCGGAAGTGGTTGGCTAA 59.676 55.000 5.23 0.00 0.00 3.09
2449 2522 0.539986 TATCTCCGGAAGTGGTTGGC 59.460 55.000 5.23 0.00 0.00 4.52
2472 2545 3.258971 GCTCTCTGCAACTCCTTGTAT 57.741 47.619 0.00 0.00 42.31 2.29
2571 2644 1.269723 GCCAACCTTTTCACTGCTACC 59.730 52.381 0.00 0.00 0.00 3.18
2782 2855 9.595823 AGCAATCTTAAATCTTTCATTCCATTG 57.404 29.630 0.00 0.00 0.00 2.82
2979 3052 2.091278 ACCTCTAGTTCCATGGATCCGA 60.091 50.000 17.06 12.78 0.00 4.55
3365 3455 5.308014 TGGTAGAATACTGCTGCATTATGG 58.692 41.667 12.47 0.00 42.51 2.74
3427 3524 8.352201 GTTTTGGATCCAATGATAATCATCGAA 58.648 33.333 27.53 11.20 35.76 3.71
3587 3702 8.495949 ACGAAATCTTATCTGTTACAACACAAG 58.504 33.333 0.00 0.00 34.70 3.16
3632 3748 6.689178 AACGTGAAAATATTGTGCATTCAC 57.311 33.333 15.44 15.44 43.88 3.18
3664 3780 9.865321 CCATGAACATGTATTCTCAAAAAGAAT 57.135 29.630 12.74 5.67 44.12 2.40
3750 3896 2.545106 GGAATTTGCTTGCAAACAGGTG 59.455 45.455 20.87 0.00 0.00 4.00
3775 3921 5.714806 CCTGGATATAACCAAAACAGGTGTT 59.285 40.000 3.04 0.00 42.25 3.32
3814 3960 5.639506 ACAGGTGACATAATTCGTCTTGAAG 59.360 40.000 8.83 0.00 40.65 3.02
3823 3969 8.997621 TGTTAGTTAGACAGGTGACATAATTC 57.002 34.615 0.00 0.00 0.00 2.17
3869 4015 1.807142 CTCTGAACTTCCTTTTCCGGC 59.193 52.381 0.00 0.00 0.00 6.13
4148 4298 1.533731 TGTCCGTTTCTCAAAATCGCC 59.466 47.619 0.00 0.00 0.00 5.54
4210 4360 9.947189 TTATATTATGGGACGGAAGGAGTATAT 57.053 33.333 0.00 0.00 0.00 0.86
4211 4361 9.417561 CTTATATTATGGGACGGAAGGAGTATA 57.582 37.037 0.00 0.00 0.00 1.47
4212 4362 8.120538 TCTTATATTATGGGACGGAAGGAGTAT 58.879 37.037 0.00 0.00 0.00 2.12
4213 4363 7.472741 TCTTATATTATGGGACGGAAGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
4214 4364 6.320518 TCTTATATTATGGGACGGAAGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
4215 4365 6.852420 TCTTATATTATGGGACGGAAGGAG 57.148 41.667 0.00 0.00 0.00 3.69
4216 4366 6.294899 CGTTCTTATATTATGGGACGGAAGGA 60.295 42.308 0.00 0.00 0.00 3.36
4217 4367 5.867716 CGTTCTTATATTATGGGACGGAAGG 59.132 44.000 0.00 0.00 0.00 3.46
4218 4368 6.453092 ACGTTCTTATATTATGGGACGGAAG 58.547 40.000 13.18 0.00 0.00 3.46
4219 4369 6.409524 ACGTTCTTATATTATGGGACGGAA 57.590 37.500 13.18 0.00 0.00 4.30
4220 4370 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4221 4371 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4263 4413 9.211485 CCGTCCCATAATATAAGAACGTTTTAT 57.789 33.333 0.46 10.83 0.00 1.40
4264 4414 8.420222 TCCGTCCCATAATATAAGAACGTTTTA 58.580 33.333 0.46 3.93 0.00 1.52
4265 4415 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
4266 4416 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
4267 4417 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4268 4418 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
4269 4419 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
4270 4420 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
4271 4421 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
4272 4422 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4273 4423 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4274 4424 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4275 4425 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4276 4426 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4277 4427 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
4278 4428 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4279 4429 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4280 4430 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4281 4431 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4282 4432 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
4283 4433 2.237643 GATAAGTACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
4284 4434 2.941480 TGATAAGTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
4285 4435 3.952967 ACTTGATAAGTACTCCCTCCGTC 59.047 47.826 0.00 0.00 40.69 4.79
4286 4436 3.700038 CACTTGATAAGTACTCCCTCCGT 59.300 47.826 0.00 0.00 40.46 4.69
4287 4437 3.952323 TCACTTGATAAGTACTCCCTCCG 59.048 47.826 0.00 0.00 40.46 4.63
4288 4438 5.202004 TCTCACTTGATAAGTACTCCCTCC 58.798 45.833 0.00 0.00 40.46 4.30
4289 4439 6.969993 ATCTCACTTGATAAGTACTCCCTC 57.030 41.667 0.00 0.00 40.46 4.30
4290 4440 7.741554 AAATCTCACTTGATAAGTACTCCCT 57.258 36.000 0.00 0.00 40.46 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.