Multiple sequence alignment - TraesCS7D01G348700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G348700 chr7D 100.000 6189 0 0 1 6189 448341461 448335273 0.000000e+00 11430.0
1 TraesCS7D01G348700 chr7D 94.771 153 8 0 1 153 523397106 523397258 8.020000e-59 239.0
2 TraesCS7D01G348700 chr7D 95.238 147 7 0 1 147 605169729 605169875 3.730000e-57 233.0
3 TraesCS7D01G348700 chr7D 95.960 99 2 2 4405 4502 22964247 22964344 6.420000e-35 159.0
4 TraesCS7D01G348700 chr7D 97.674 86 1 1 4415 4499 141292087 141292172 5.000000e-31 147.0
5 TraesCS7D01G348700 chr7D 84.028 144 20 2 1469 1609 628765964 628765821 1.080000e-27 135.0
6 TraesCS7D01G348700 chr7B 95.364 3128 90 25 363 3454 465593679 465590571 0.000000e+00 4922.0
7 TraesCS7D01G348700 chr7B 93.922 2435 79 21 3405 5832 465590568 465588196 0.000000e+00 3613.0
8 TraesCS7D01G348700 chr7B 91.444 374 19 9 5829 6189 465588077 465587704 9.260000e-138 501.0
9 TraesCS7D01G348700 chr7B 86.222 225 31 0 152 376 465598673 465598449 1.720000e-60 244.0
10 TraesCS7D01G348700 chr7B 77.337 353 56 18 1272 1609 686538982 686539325 2.950000e-43 187.0
11 TraesCS7D01G348700 chr7B 77.273 352 58 14 1272 1609 731101471 731101814 2.950000e-43 187.0
12 TraesCS7D01G348700 chr7A 90.192 2447 132 47 375 2746 547568587 547571000 0.000000e+00 3090.0
13 TraesCS7D01G348700 chr7A 90.617 1247 72 19 4498 5713 547572869 547574101 0.000000e+00 1613.0
14 TraesCS7D01G348700 chr7A 84.241 1193 94 30 3236 4417 547571761 547572870 0.000000e+00 1075.0
15 TraesCS7D01G348700 chr7A 93.464 153 9 1 1 153 140745430 140745279 6.240000e-55 226.0
16 TraesCS7D01G348700 chr7A 91.463 164 12 2 1 163 141016551 141016389 2.250000e-54 224.0
17 TraesCS7D01G348700 chr7A 77.159 359 60 13 1272 1616 725162062 725162412 8.190000e-44 189.0
18 TraesCS7D01G348700 chr7A 95.238 84 3 1 3164 3247 252187683 252187601 1.400000e-26 132.0
19 TraesCS7D01G348700 chr7A 94.595 74 4 0 5927 6000 547574183 547574256 1.410000e-21 115.0
20 TraesCS7D01G348700 chr7A 100.000 30 0 0 2861 2890 680955099 680955070 8.670000e-04 56.5
21 TraesCS7D01G348700 chr2D 94.771 153 8 0 1 153 620551722 620551570 8.020000e-59 239.0
22 TraesCS7D01G348700 chr2D 95.238 147 6 1 1 147 391287560 391287705 1.340000e-56 231.0
23 TraesCS7D01G348700 chr2D 92.810 153 11 0 1 153 437953098 437952946 8.070000e-54 222.0
24 TraesCS7D01G348700 chr2D 96.875 96 2 1 4409 4503 270850348 270850253 6.420000e-35 159.0
25 TraesCS7D01G348700 chr2D 94.175 103 3 3 4400 4502 386706984 386707083 2.990000e-33 154.0
26 TraesCS7D01G348700 chr2D 90.435 115 10 1 5801 5915 512769231 512769344 3.860000e-32 150.0
27 TraesCS7D01G348700 chr2D 91.667 108 6 2 4415 4519 560513538 560513431 5.000000e-31 147.0
28 TraesCS7D01G348700 chr2D 88.136 118 13 1 5798 5915 617101097 617101213 8.370000e-29 139.0
29 TraesCS7D01G348700 chr2D 86.992 123 12 4 5793 5915 463878916 463879034 1.080000e-27 135.0
30 TraesCS7D01G348700 chr2D 91.111 90 6 2 3162 3251 23305960 23306047 3.030000e-23 121.0
31 TraesCS7D01G348700 chr2D 76.395 233 38 14 152 373 491956512 491956286 6.560000e-20 110.0
32 TraesCS7D01G348700 chr3A 77.346 437 72 23 1195 1615 552802992 552803417 3.730000e-57 233.0
33 TraesCS7D01G348700 chr3A 78.571 224 37 11 152 372 109117798 109118013 3.010000e-28 137.0
34 TraesCS7D01G348700 chr3A 83.230 161 14 12 152 304 404201141 404200986 1.080000e-27 135.0
35 TraesCS7D01G348700 chr3A 91.011 89 6 1 3159 3247 716368626 716368712 1.090000e-22 119.0
36 TraesCS7D01G348700 chr5D 93.464 153 10 0 1 153 324705662 324705510 1.740000e-55 228.0
37 TraesCS7D01G348700 chr5D 82.166 157 23 5 152 304 329644280 329644435 5.030000e-26 130.0
38 TraesCS7D01G348700 chr5A 92.810 153 11 0 1 153 478314899 478314747 8.070000e-54 222.0
39 TraesCS7D01G348700 chr5A 88.696 115 12 1 5801 5915 321920744 321920631 8.370000e-29 139.0
40 TraesCS7D01G348700 chr5A 91.667 48 4 0 2850 2897 458338812 458338765 4.000000e-07 67.6
41 TraesCS7D01G348700 chr3D 77.628 371 70 12 1246 1610 103233225 103232862 4.860000e-51 213.0
42 TraesCS7D01G348700 chr3D 83.444 151 19 5 158 304 320821543 320821691 1.080000e-27 135.0
43 TraesCS7D01G348700 chr3D 89.011 91 9 1 3158 3248 382751616 382751705 1.820000e-20 111.0
44 TraesCS7D01G348700 chr3D 89.231 65 7 0 2835 2899 138887415 138887351 1.430000e-11 82.4
45 TraesCS7D01G348700 chr3B 78.618 304 55 9 1312 1610 153809994 153809696 6.330000e-45 193.0
46 TraesCS7D01G348700 chr3B 94.118 102 3 3 4413 4511 70293928 70294029 1.070000e-32 152.0
47 TraesCS7D01G348700 chr3B 92.135 89 5 1 3159 3247 776359540 776359626 2.340000e-24 124.0
48 TraesCS7D01G348700 chr3B 90.110 91 6 2 3162 3252 776359626 776359539 1.410000e-21 115.0
49 TraesCS7D01G348700 chr2B 82.464 211 30 5 152 358 431775682 431775475 1.770000e-40 178.0
50 TraesCS7D01G348700 chr2B 90.000 60 4 2 2840 2899 493969065 493969008 6.650000e-10 76.8
51 TraesCS7D01G348700 chr6A 98.889 90 0 1 4415 4503 557970047 557970136 6.420000e-35 159.0
52 TraesCS7D01G348700 chr6A 85.938 128 14 3 5791 5915 99403056 99403182 3.890000e-27 134.0
53 TraesCS7D01G348700 chr6D 98.876 89 0 1 4416 4503 78083079 78083167 2.310000e-34 158.0
54 TraesCS7D01G348700 chr1D 94.059 101 5 1 4407 4506 421923226 421923326 1.070000e-32 152.0
55 TraesCS7D01G348700 chr1D 81.176 170 29 2 152 318 305219976 305220145 3.890000e-27 134.0
56 TraesCS7D01G348700 chr1D 85.981 107 12 3 3156 3261 307349149 307349253 1.820000e-20 111.0
57 TraesCS7D01G348700 chr6B 89.076 119 12 1 5797 5915 233039342 233039225 5.000000e-31 147.0
58 TraesCS7D01G348700 chr6B 79.058 191 36 3 152 339 583053038 583052849 1.810000e-25 128.0
59 TraesCS7D01G348700 chr2A 88.983 118 12 1 5798 5915 747272211 747272327 1.800000e-30 145.0
60 TraesCS7D01G348700 chr2A 91.111 90 6 2 3162 3251 25484392 25484305 3.030000e-23 121.0
61 TraesCS7D01G348700 chr4A 87.603 121 11 3 5797 5916 649809774 649809657 3.010000e-28 137.0
62 TraesCS7D01G348700 chr1B 86.508 126 14 3 5790 5915 250423814 250423692 1.080000e-27 135.0
63 TraesCS7D01G348700 chr4D 95.385 65 3 0 2835 2899 50156112 50156048 3.050000e-18 104.0
64 TraesCS7D01G348700 chrUn 90.741 54 5 0 2837 2890 112408712 112408765 8.610000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G348700 chr7D 448335273 448341461 6188 True 11430.00 11430 100.000000 1 6189 1 chr7D.!!$R1 6188
1 TraesCS7D01G348700 chr7B 465587704 465593679 5975 True 3012.00 4922 93.576667 363 6189 3 chr7B.!!$R2 5826
2 TraesCS7D01G348700 chr7A 547568587 547574256 5669 False 1473.25 3090 89.911250 375 6000 4 chr7A.!!$F2 5625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.036105 ATGCGAGCAGTGTTGGATGA 60.036 50.000 3.58 0.0 0.0 2.92 F
744 760 0.047176 AGAGAGAGAGAGGGAGGGGA 59.953 60.000 0.00 0.0 0.0 4.81 F
745 761 0.478507 GAGAGAGAGAGGGAGGGGAG 59.521 65.000 0.00 0.0 0.0 4.30 F
2462 2543 1.067212 GTGTGTAGGTATCAGAGGGCG 59.933 57.143 0.00 0.0 0.0 6.13 F
3353 3808 0.598065 GTTGAGGTGGCGCTGAATTT 59.402 50.000 7.64 0.0 0.0 1.82 F
4108 4631 1.280421 GAATGGCACTCCTCAGTCCTT 59.720 52.381 0.00 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1737 1.227089 CAGAGATCGCCCGTGGAAG 60.227 63.158 0.00 0.0 0.00 3.46 R
2462 2543 0.802607 GGTCGACGATCACAGGCTTC 60.803 60.000 9.92 0.0 0.00 3.86 R
2552 2633 6.430000 GGAAACATTTACCAGTGAAGAGCTTA 59.570 38.462 0.00 0.0 0.00 3.09 R
3776 4288 0.877071 CACGTGGCTTTCTTGAGCAT 59.123 50.000 7.95 0.0 44.49 3.79 R
4552 5076 2.489971 GCAACAACTAGTAGTGGTGCA 58.510 47.619 25.75 0.0 38.72 4.57 R
5200 5734 3.723154 ACCAAAGTAACCTACCCTGGAAA 59.277 43.478 0.00 0.0 35.53 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.659290 AATTTGAAAGAAACGACTAACAACG 57.341 32.000 0.00 0.00 0.00 4.10
26 27 4.782252 TGAAAGAAACGACTAACAACGG 57.218 40.909 0.00 0.00 0.00 4.44
27 28 4.431809 TGAAAGAAACGACTAACAACGGA 58.568 39.130 0.00 0.00 0.00 4.69
28 29 4.505191 TGAAAGAAACGACTAACAACGGAG 59.495 41.667 0.00 0.00 0.00 4.63
29 30 2.401351 AGAAACGACTAACAACGGAGC 58.599 47.619 0.00 0.00 0.00 4.70
30 31 1.458445 GAAACGACTAACAACGGAGCC 59.542 52.381 0.00 0.00 0.00 4.70
31 32 0.320160 AACGACTAACAACGGAGCCC 60.320 55.000 0.00 0.00 0.00 5.19
32 33 1.183676 ACGACTAACAACGGAGCCCT 61.184 55.000 0.00 0.00 0.00 5.19
33 34 0.458025 CGACTAACAACGGAGCCCTC 60.458 60.000 0.00 0.00 0.00 4.30
34 35 0.896226 GACTAACAACGGAGCCCTCT 59.104 55.000 0.00 0.00 0.00 3.69
35 36 1.275573 GACTAACAACGGAGCCCTCTT 59.724 52.381 0.00 0.00 0.00 2.85
36 37 1.002087 ACTAACAACGGAGCCCTCTTG 59.998 52.381 0.00 0.00 0.00 3.02
37 38 0.321298 TAACAACGGAGCCCTCTTGC 60.321 55.000 0.00 0.00 0.00 4.01
38 39 2.747855 CAACGGAGCCCTCTTGCC 60.748 66.667 0.00 0.00 0.00 4.52
57 58 2.440980 GCCCTTGCCAGGATCCAC 60.441 66.667 15.82 3.31 44.19 4.02
58 59 2.276740 CCCTTGCCAGGATCCACC 59.723 66.667 15.82 1.73 44.19 4.61
67 68 2.764128 GGATCCACCTCGCCTCCA 60.764 66.667 6.95 0.00 35.41 3.86
68 69 2.143419 GGATCCACCTCGCCTCCAT 61.143 63.158 6.95 0.00 35.41 3.41
69 70 0.832135 GGATCCACCTCGCCTCCATA 60.832 60.000 6.95 0.00 35.41 2.74
70 71 0.605589 GATCCACCTCGCCTCCATAG 59.394 60.000 0.00 0.00 0.00 2.23
71 72 1.476007 ATCCACCTCGCCTCCATAGC 61.476 60.000 0.00 0.00 0.00 2.97
72 73 2.423446 CACCTCGCCTCCATAGCC 59.577 66.667 0.00 0.00 0.00 3.93
73 74 2.844839 ACCTCGCCTCCATAGCCC 60.845 66.667 0.00 0.00 0.00 5.19
74 75 2.525381 CCTCGCCTCCATAGCCCT 60.525 66.667 0.00 0.00 0.00 5.19
75 76 1.228894 CCTCGCCTCCATAGCCCTA 60.229 63.158 0.00 0.00 0.00 3.53
76 77 1.254284 CCTCGCCTCCATAGCCCTAG 61.254 65.000 0.00 0.00 0.00 3.02
77 78 1.228894 TCGCCTCCATAGCCCTAGG 60.229 63.158 0.06 0.06 0.00 3.02
78 79 2.286523 CGCCTCCATAGCCCTAGGG 61.287 68.421 24.89 24.89 38.28 3.53
88 89 4.475444 CCCTAGGGCCACCGGAGA 62.475 72.222 16.90 0.00 43.47 3.71
89 90 3.155167 CCTAGGGCCACCGGAGAC 61.155 72.222 9.46 0.00 43.47 3.36
111 112 4.899239 CAGACCTGCGGCGGATCC 62.899 72.222 11.13 0.00 0.00 3.36
130 131 2.032681 GCGAGAGGCACAAACCCT 59.967 61.111 0.00 0.00 42.87 4.34
131 132 1.295423 GCGAGAGGCACAAACCCTA 59.705 57.895 0.00 0.00 42.87 3.53
132 133 0.741221 GCGAGAGGCACAAACCCTAG 60.741 60.000 0.00 0.00 42.87 3.02
133 134 0.741221 CGAGAGGCACAAACCCTAGC 60.741 60.000 0.00 0.00 31.41 3.42
134 135 0.615850 GAGAGGCACAAACCCTAGCT 59.384 55.000 0.00 0.00 31.41 3.32
135 136 1.003696 GAGAGGCACAAACCCTAGCTT 59.996 52.381 0.00 0.00 31.41 3.74
136 137 1.425448 AGAGGCACAAACCCTAGCTTT 59.575 47.619 0.00 0.00 31.41 3.51
137 138 2.158460 AGAGGCACAAACCCTAGCTTTT 60.158 45.455 0.00 0.00 31.41 2.27
138 139 2.628178 GAGGCACAAACCCTAGCTTTTT 59.372 45.455 0.00 0.00 31.41 1.94
160 161 8.533569 TTTTTGGTGGAGAAAGAGACTTATTT 57.466 30.769 0.00 0.00 0.00 1.40
161 162 7.510549 TTTGGTGGAGAAAGAGACTTATTTG 57.489 36.000 0.00 0.00 0.00 2.32
162 163 5.003804 TGGTGGAGAAAGAGACTTATTTGC 58.996 41.667 0.00 0.00 0.00 3.68
163 164 5.003804 GGTGGAGAAAGAGACTTATTTGCA 58.996 41.667 0.00 0.00 0.00 4.08
164 165 5.649831 GGTGGAGAAAGAGACTTATTTGCAT 59.350 40.000 0.00 0.00 0.00 3.96
165 166 6.404074 GGTGGAGAAAGAGACTTATTTGCATG 60.404 42.308 0.00 0.00 0.00 4.06
166 167 5.124457 TGGAGAAAGAGACTTATTTGCATGC 59.876 40.000 11.82 11.82 0.00 4.06
167 168 5.356470 GGAGAAAGAGACTTATTTGCATGCT 59.644 40.000 20.33 0.40 0.00 3.79
168 169 6.540189 GGAGAAAGAGACTTATTTGCATGCTA 59.460 38.462 20.33 8.83 0.00 3.49
169 170 7.228308 GGAGAAAGAGACTTATTTGCATGCTAT 59.772 37.037 20.33 14.38 0.00 2.97
170 171 7.928103 AGAAAGAGACTTATTTGCATGCTATG 58.072 34.615 20.33 7.90 0.00 2.23
171 172 7.555554 AGAAAGAGACTTATTTGCATGCTATGT 59.444 33.333 20.33 11.03 0.00 2.29
172 173 8.737168 AAAGAGACTTATTTGCATGCTATGTA 57.263 30.769 20.33 5.05 0.00 2.29
173 174 8.915057 AAGAGACTTATTTGCATGCTATGTAT 57.085 30.769 20.33 8.57 0.00 2.29
174 175 8.320396 AGAGACTTATTTGCATGCTATGTATG 57.680 34.615 20.33 11.49 0.00 2.39
175 176 7.389884 AGAGACTTATTTGCATGCTATGTATGG 59.610 37.037 20.33 5.07 0.00 2.74
176 177 7.226441 AGACTTATTTGCATGCTATGTATGGA 58.774 34.615 20.33 0.00 0.00 3.41
177 178 7.886970 AGACTTATTTGCATGCTATGTATGGAT 59.113 33.333 20.33 2.42 0.00 3.41
178 179 7.823665 ACTTATTTGCATGCTATGTATGGATG 58.176 34.615 20.33 1.03 36.53 3.51
179 180 5.654603 ATTTGCATGCTATGTATGGATGG 57.345 39.130 20.33 0.00 34.51 3.51
180 181 3.793819 TGCATGCTATGTATGGATGGT 57.206 42.857 20.33 0.00 34.51 3.55
181 182 4.103013 TGCATGCTATGTATGGATGGTT 57.897 40.909 20.33 0.00 34.51 3.67
182 183 4.472496 TGCATGCTATGTATGGATGGTTT 58.528 39.130 20.33 0.00 34.51 3.27
183 184 4.278919 TGCATGCTATGTATGGATGGTTTG 59.721 41.667 20.33 0.00 34.51 2.93
184 185 4.279169 GCATGCTATGTATGGATGGTTTGT 59.721 41.667 11.37 0.00 34.51 2.83
185 186 5.765176 CATGCTATGTATGGATGGTTTGTG 58.235 41.667 0.00 0.00 31.08 3.33
186 187 3.631686 TGCTATGTATGGATGGTTTGTGC 59.368 43.478 0.00 0.00 0.00 4.57
187 188 3.885297 GCTATGTATGGATGGTTTGTGCT 59.115 43.478 0.00 0.00 0.00 4.40
188 189 5.063204 GCTATGTATGGATGGTTTGTGCTA 58.937 41.667 0.00 0.00 0.00 3.49
189 190 5.707298 GCTATGTATGGATGGTTTGTGCTAT 59.293 40.000 0.00 0.00 0.00 2.97
190 191 6.207417 GCTATGTATGGATGGTTTGTGCTATT 59.793 38.462 0.00 0.00 0.00 1.73
191 192 6.639632 ATGTATGGATGGTTTGTGCTATTC 57.360 37.500 0.00 0.00 0.00 1.75
192 193 5.754782 TGTATGGATGGTTTGTGCTATTCT 58.245 37.500 0.00 0.00 0.00 2.40
193 194 5.822519 TGTATGGATGGTTTGTGCTATTCTC 59.177 40.000 0.00 0.00 0.00 2.87
194 195 4.574674 TGGATGGTTTGTGCTATTCTCT 57.425 40.909 0.00 0.00 0.00 3.10
195 196 5.692115 TGGATGGTTTGTGCTATTCTCTA 57.308 39.130 0.00 0.00 0.00 2.43
196 197 6.252599 TGGATGGTTTGTGCTATTCTCTAT 57.747 37.500 0.00 0.00 0.00 1.98
197 198 6.291377 TGGATGGTTTGTGCTATTCTCTATC 58.709 40.000 0.00 0.00 0.00 2.08
198 199 5.703130 GGATGGTTTGTGCTATTCTCTATCC 59.297 44.000 0.00 0.00 0.00 2.59
199 200 4.693283 TGGTTTGTGCTATTCTCTATCCG 58.307 43.478 0.00 0.00 0.00 4.18
200 201 4.404394 TGGTTTGTGCTATTCTCTATCCGA 59.596 41.667 0.00 0.00 0.00 4.55
201 202 5.105106 TGGTTTGTGCTATTCTCTATCCGAA 60.105 40.000 0.00 0.00 0.00 4.30
202 203 5.234543 GGTTTGTGCTATTCTCTATCCGAAC 59.765 44.000 0.00 0.00 0.00 3.95
203 204 5.854010 TTGTGCTATTCTCTATCCGAACT 57.146 39.130 0.00 0.00 0.00 3.01
204 205 5.854010 TGTGCTATTCTCTATCCGAACTT 57.146 39.130 0.00 0.00 0.00 2.66
205 206 6.222038 TGTGCTATTCTCTATCCGAACTTT 57.778 37.500 0.00 0.00 0.00 2.66
206 207 6.042777 TGTGCTATTCTCTATCCGAACTTTG 58.957 40.000 0.00 0.00 0.00 2.77
207 208 6.127451 TGTGCTATTCTCTATCCGAACTTTGA 60.127 38.462 0.00 0.00 0.00 2.69
208 209 6.926272 GTGCTATTCTCTATCCGAACTTTGAT 59.074 38.462 0.00 0.00 0.00 2.57
209 210 6.925718 TGCTATTCTCTATCCGAACTTTGATG 59.074 38.462 0.00 0.00 0.00 3.07
210 211 7.148641 GCTATTCTCTATCCGAACTTTGATGA 58.851 38.462 0.00 0.00 0.00 2.92
211 212 7.653713 GCTATTCTCTATCCGAACTTTGATGAA 59.346 37.037 0.00 0.00 0.00 2.57
212 213 7.778470 ATTCTCTATCCGAACTTTGATGAAC 57.222 36.000 0.00 0.00 0.00 3.18
213 214 6.531503 TCTCTATCCGAACTTTGATGAACT 57.468 37.500 0.00 0.00 0.00 3.01
214 215 6.936279 TCTCTATCCGAACTTTGATGAACTT 58.064 36.000 0.00 0.00 0.00 2.66
215 216 7.036220 TCTCTATCCGAACTTTGATGAACTTC 58.964 38.462 0.00 0.00 0.00 3.01
216 217 6.106673 TCTATCCGAACTTTGATGAACTTCC 58.893 40.000 0.00 0.00 0.00 3.46
217 218 3.408634 TCCGAACTTTGATGAACTTCCC 58.591 45.455 0.00 0.00 0.00 3.97
218 219 2.159627 CCGAACTTTGATGAACTTCCCG 59.840 50.000 0.00 0.00 0.00 5.14
219 220 2.806244 CGAACTTTGATGAACTTCCCGT 59.194 45.455 0.00 0.00 0.00 5.28
220 221 3.363970 CGAACTTTGATGAACTTCCCGTG 60.364 47.826 0.00 0.00 0.00 4.94
221 222 3.208747 ACTTTGATGAACTTCCCGTGT 57.791 42.857 0.00 0.00 0.00 4.49
222 223 3.551846 ACTTTGATGAACTTCCCGTGTT 58.448 40.909 0.00 0.00 0.00 3.32
223 224 3.951680 ACTTTGATGAACTTCCCGTGTTT 59.048 39.130 0.00 0.00 0.00 2.83
224 225 3.980646 TTGATGAACTTCCCGTGTTTG 57.019 42.857 0.00 0.00 0.00 2.93
225 226 1.606668 TGATGAACTTCCCGTGTTTGC 59.393 47.619 0.00 0.00 0.00 3.68
226 227 1.606668 GATGAACTTCCCGTGTTTGCA 59.393 47.619 0.00 0.00 0.00 4.08
227 228 1.686355 TGAACTTCCCGTGTTTGCAT 58.314 45.000 0.00 0.00 0.00 3.96
228 229 1.336440 TGAACTTCCCGTGTTTGCATG 59.664 47.619 0.00 0.00 0.00 4.06
229 230 1.606668 GAACTTCCCGTGTTTGCATGA 59.393 47.619 0.00 0.00 33.58 3.07
230 231 1.686355 ACTTCCCGTGTTTGCATGAA 58.314 45.000 0.00 0.00 33.58 2.57
231 232 2.238521 ACTTCCCGTGTTTGCATGAAT 58.761 42.857 0.00 0.00 33.58 2.57
232 233 2.627699 ACTTCCCGTGTTTGCATGAATT 59.372 40.909 0.00 0.00 33.58 2.17
233 234 3.823873 ACTTCCCGTGTTTGCATGAATTA 59.176 39.130 0.00 0.00 33.58 1.40
234 235 3.840890 TCCCGTGTTTGCATGAATTAC 57.159 42.857 0.00 0.00 33.58 1.89
235 236 2.160615 TCCCGTGTTTGCATGAATTACG 59.839 45.455 0.00 0.00 33.58 3.18
236 237 2.095466 CCCGTGTTTGCATGAATTACGT 60.095 45.455 0.00 0.00 33.58 3.57
237 238 3.160545 CCGTGTTTGCATGAATTACGTC 58.839 45.455 0.00 0.00 33.58 4.34
238 239 3.120338 CCGTGTTTGCATGAATTACGTCT 60.120 43.478 0.00 0.00 33.58 4.18
239 240 3.840209 CGTGTTTGCATGAATTACGTCTG 59.160 43.478 0.00 0.00 33.58 3.51
240 241 4.158384 GTGTTTGCATGAATTACGTCTGG 58.842 43.478 0.00 0.00 0.00 3.86
241 242 3.818210 TGTTTGCATGAATTACGTCTGGT 59.182 39.130 0.00 0.00 0.00 4.00
242 243 4.277174 TGTTTGCATGAATTACGTCTGGTT 59.723 37.500 0.00 0.00 0.00 3.67
243 244 5.470437 TGTTTGCATGAATTACGTCTGGTTA 59.530 36.000 0.00 0.00 0.00 2.85
244 245 5.794687 TTGCATGAATTACGTCTGGTTAG 57.205 39.130 0.00 0.00 0.00 2.34
245 246 4.827692 TGCATGAATTACGTCTGGTTAGT 58.172 39.130 0.00 0.00 0.00 2.24
246 247 5.242434 TGCATGAATTACGTCTGGTTAGTT 58.758 37.500 0.00 0.00 0.00 2.24
247 248 5.350365 TGCATGAATTACGTCTGGTTAGTTC 59.650 40.000 0.00 0.00 0.00 3.01
248 249 5.350365 GCATGAATTACGTCTGGTTAGTTCA 59.650 40.000 0.00 0.00 31.34 3.18
249 250 6.672357 GCATGAATTACGTCTGGTTAGTTCAC 60.672 42.308 0.00 0.00 30.32 3.18
250 251 5.845103 TGAATTACGTCTGGTTAGTTCACA 58.155 37.500 0.00 0.00 0.00 3.58
251 252 5.693104 TGAATTACGTCTGGTTAGTTCACAC 59.307 40.000 0.00 0.00 0.00 3.82
252 253 4.652421 TTACGTCTGGTTAGTTCACACA 57.348 40.909 0.00 0.00 0.00 3.72
253 254 3.530265 ACGTCTGGTTAGTTCACACAA 57.470 42.857 0.00 0.00 0.00 3.33
254 255 3.192466 ACGTCTGGTTAGTTCACACAAC 58.808 45.455 0.00 0.00 0.00 3.32
255 256 2.217847 CGTCTGGTTAGTTCACACAACG 59.782 50.000 0.00 0.00 0.00 4.10
256 257 2.542595 GTCTGGTTAGTTCACACAACGG 59.457 50.000 0.00 0.00 0.00 4.44
257 258 2.168936 TCTGGTTAGTTCACACAACGGT 59.831 45.455 0.00 0.00 0.00 4.83
258 259 2.940410 CTGGTTAGTTCACACAACGGTT 59.060 45.455 0.00 0.00 0.00 4.44
259 260 4.121317 CTGGTTAGTTCACACAACGGTTA 58.879 43.478 0.00 0.00 0.00 2.85
260 261 4.511527 TGGTTAGTTCACACAACGGTTAA 58.488 39.130 0.00 0.00 0.00 2.01
261 262 4.940046 TGGTTAGTTCACACAACGGTTAAA 59.060 37.500 0.00 0.00 0.00 1.52
262 263 5.413833 TGGTTAGTTCACACAACGGTTAAAA 59.586 36.000 0.00 0.00 0.00 1.52
263 264 6.095160 TGGTTAGTTCACACAACGGTTAAAAT 59.905 34.615 0.00 0.00 0.00 1.82
264 265 6.415573 GGTTAGTTCACACAACGGTTAAAATG 59.584 38.462 0.00 0.00 0.00 2.32
265 266 5.570234 AGTTCACACAACGGTTAAAATGT 57.430 34.783 0.00 0.00 0.00 2.71
266 267 6.680874 AGTTCACACAACGGTTAAAATGTA 57.319 33.333 0.00 0.00 0.00 2.29
267 268 7.266922 AGTTCACACAACGGTTAAAATGTAT 57.733 32.000 0.00 0.00 0.00 2.29
268 269 7.136119 AGTTCACACAACGGTTAAAATGTATG 58.864 34.615 0.00 0.00 0.00 2.39
269 270 5.453648 TCACACAACGGTTAAAATGTATGC 58.546 37.500 0.00 0.00 0.00 3.14
270 271 4.319639 CACACAACGGTTAAAATGTATGCG 59.680 41.667 0.00 0.00 0.00 4.73
271 272 4.213694 ACACAACGGTTAAAATGTATGCGA 59.786 37.500 0.00 0.00 0.00 5.10
272 273 4.786068 CACAACGGTTAAAATGTATGCGAG 59.214 41.667 0.00 0.00 0.00 5.03
273 274 3.668596 ACGGTTAAAATGTATGCGAGC 57.331 42.857 0.00 0.00 0.00 5.03
274 275 3.004171 ACGGTTAAAATGTATGCGAGCA 58.996 40.909 0.00 0.00 0.00 4.26
275 276 3.063452 ACGGTTAAAATGTATGCGAGCAG 59.937 43.478 3.58 0.00 0.00 4.24
276 277 3.063452 CGGTTAAAATGTATGCGAGCAGT 59.937 43.478 3.58 0.00 0.00 4.40
277 278 4.342772 GGTTAAAATGTATGCGAGCAGTG 58.657 43.478 3.58 0.00 0.00 3.66
278 279 4.142687 GGTTAAAATGTATGCGAGCAGTGT 60.143 41.667 3.58 0.00 0.00 3.55
279 280 5.390613 GTTAAAATGTATGCGAGCAGTGTT 58.609 37.500 3.58 0.00 0.00 3.32
280 281 3.476295 AAATGTATGCGAGCAGTGTTG 57.524 42.857 3.58 0.00 0.00 3.33
281 282 1.372582 ATGTATGCGAGCAGTGTTGG 58.627 50.000 3.58 0.00 0.00 3.77
282 283 0.320050 TGTATGCGAGCAGTGTTGGA 59.680 50.000 3.58 0.00 0.00 3.53
283 284 1.066215 TGTATGCGAGCAGTGTTGGAT 60.066 47.619 3.58 0.00 0.00 3.41
284 285 1.328680 GTATGCGAGCAGTGTTGGATG 59.671 52.381 3.58 0.00 0.00 3.51
285 286 0.036105 ATGCGAGCAGTGTTGGATGA 60.036 50.000 3.58 0.00 0.00 2.92
286 287 0.950555 TGCGAGCAGTGTTGGATGAC 60.951 55.000 0.00 0.00 0.00 3.06
287 288 1.959899 GCGAGCAGTGTTGGATGACG 61.960 60.000 0.00 0.00 0.00 4.35
288 289 0.388520 CGAGCAGTGTTGGATGACGA 60.389 55.000 0.00 0.00 0.00 4.20
289 290 1.071605 GAGCAGTGTTGGATGACGAC 58.928 55.000 0.00 0.00 0.00 4.34
290 291 0.681733 AGCAGTGTTGGATGACGACT 59.318 50.000 0.00 0.00 34.36 4.18
291 292 1.071605 GCAGTGTTGGATGACGACTC 58.928 55.000 0.00 0.00 34.36 3.36
292 293 1.714794 CAGTGTTGGATGACGACTCC 58.285 55.000 0.00 0.00 34.36 3.85
293 294 0.608640 AGTGTTGGATGACGACTCCC 59.391 55.000 0.00 0.00 34.36 4.30
294 295 0.736325 GTGTTGGATGACGACTCCCG 60.736 60.000 0.00 0.00 45.44 5.14
295 296 1.810030 GTTGGATGACGACTCCCGC 60.810 63.158 0.00 0.00 43.32 6.13
296 297 2.279810 TTGGATGACGACTCCCGCA 61.280 57.895 0.00 0.00 43.32 5.69
297 298 1.613317 TTGGATGACGACTCCCGCAT 61.613 55.000 0.00 0.00 43.32 4.73
298 299 1.300233 GGATGACGACTCCCGCATC 60.300 63.158 0.00 0.00 43.91 3.91
299 300 1.300233 GATGACGACTCCCGCATCC 60.300 63.158 0.00 0.00 41.47 3.51
300 301 2.016393 GATGACGACTCCCGCATCCA 62.016 60.000 0.00 0.00 41.47 3.41
301 302 1.402896 ATGACGACTCCCGCATCCAT 61.403 55.000 0.00 0.00 43.32 3.41
302 303 1.592669 GACGACTCCCGCATCCATG 60.593 63.158 0.00 0.00 43.32 3.66
303 304 2.298158 GACGACTCCCGCATCCATGT 62.298 60.000 0.00 0.00 43.32 3.21
304 305 1.153369 CGACTCCCGCATCCATGTT 60.153 57.895 0.00 0.00 0.00 2.71
305 306 0.744414 CGACTCCCGCATCCATGTTT 60.744 55.000 0.00 0.00 0.00 2.83
306 307 1.463674 GACTCCCGCATCCATGTTTT 58.536 50.000 0.00 0.00 0.00 2.43
307 308 1.401905 GACTCCCGCATCCATGTTTTC 59.598 52.381 0.00 0.00 0.00 2.29
308 309 1.271871 ACTCCCGCATCCATGTTTTCA 60.272 47.619 0.00 0.00 0.00 2.69
309 310 1.133025 CTCCCGCATCCATGTTTTCAC 59.867 52.381 0.00 0.00 0.00 3.18
310 311 0.887247 CCCGCATCCATGTTTTCACA 59.113 50.000 0.00 0.00 37.31 3.58
311 312 1.402720 CCCGCATCCATGTTTTCACAC 60.403 52.381 0.00 0.00 35.03 3.82
312 313 1.541147 CCGCATCCATGTTTTCACACT 59.459 47.619 0.00 0.00 35.03 3.55
313 314 2.587956 CGCATCCATGTTTTCACACTG 58.412 47.619 0.00 0.00 35.03 3.66
314 315 2.669113 CGCATCCATGTTTTCACACTGG 60.669 50.000 0.00 0.00 35.03 4.00
315 316 2.297033 GCATCCATGTTTTCACACTGGT 59.703 45.455 0.00 0.00 35.03 4.00
316 317 3.612479 GCATCCATGTTTTCACACTGGTC 60.612 47.826 0.00 0.00 35.03 4.02
317 318 2.582052 TCCATGTTTTCACACTGGTCC 58.418 47.619 0.00 0.00 35.03 4.46
318 319 2.174639 TCCATGTTTTCACACTGGTCCT 59.825 45.455 0.00 0.00 35.03 3.85
319 320 2.958355 CCATGTTTTCACACTGGTCCTT 59.042 45.455 0.00 0.00 35.03 3.36
320 321 3.004734 CCATGTTTTCACACTGGTCCTTC 59.995 47.826 0.00 0.00 35.03 3.46
321 322 2.285083 TGTTTTCACACTGGTCCTTCG 58.715 47.619 0.00 0.00 0.00 3.79
322 323 2.285977 GTTTTCACACTGGTCCTTCGT 58.714 47.619 0.00 0.00 0.00 3.85
323 324 1.948104 TTTCACACTGGTCCTTCGTG 58.052 50.000 5.38 5.38 34.92 4.35
324 325 0.828022 TTCACACTGGTCCTTCGTGT 59.172 50.000 6.41 6.41 42.14 4.49
326 327 2.208527 ACACTGGTCCTTCGTGTGT 58.791 52.632 10.17 0.00 40.11 3.72
327 328 1.405872 ACACTGGTCCTTCGTGTGTA 58.594 50.000 10.17 0.00 40.11 2.90
328 329 1.068127 ACACTGGTCCTTCGTGTGTAC 59.932 52.381 10.17 0.00 40.11 2.90
338 339 2.297625 CGTGTGTACGGATGGATGC 58.702 57.895 0.00 0.00 46.23 3.91
339 340 1.151777 CGTGTGTACGGATGGATGCC 61.152 60.000 0.00 0.00 46.23 4.40
340 341 0.814010 GTGTGTACGGATGGATGCCC 60.814 60.000 0.00 0.00 0.00 5.36
353 354 4.909696 TGGATGCCCATGTAAATTTACG 57.090 40.909 20.51 9.41 37.58 3.18
354 355 3.634448 TGGATGCCCATGTAAATTTACGG 59.366 43.478 20.51 16.77 37.58 4.02
355 356 3.005367 GGATGCCCATGTAAATTTACGGG 59.995 47.826 25.72 25.72 37.37 5.28
356 357 3.088789 TGCCCATGTAAATTTACGGGT 57.911 42.857 28.14 15.02 36.94 5.28
357 358 3.018149 TGCCCATGTAAATTTACGGGTC 58.982 45.455 28.14 22.90 36.94 4.46
358 359 3.018149 GCCCATGTAAATTTACGGGTCA 58.982 45.455 28.14 13.04 36.94 4.02
359 360 3.181494 GCCCATGTAAATTTACGGGTCAC 60.181 47.826 28.14 16.31 36.94 3.67
373 374 1.374758 GTCACGGAGACTGCCCTTG 60.375 63.158 3.35 0.00 44.09 3.61
425 426 6.769512 AGAAAAAGTAACTGGCATCTGTCTA 58.230 36.000 0.00 0.00 0.00 2.59
482 491 3.600388 ACATCGAAAGTTCATCCCAGAC 58.400 45.455 0.00 0.00 0.00 3.51
739 755 2.278657 TCTGGAGAGAGAGAGAGGGA 57.721 55.000 0.00 0.00 0.00 4.20
740 756 2.126882 TCTGGAGAGAGAGAGAGGGAG 58.873 57.143 0.00 0.00 0.00 4.30
741 757 1.143684 CTGGAGAGAGAGAGAGGGAGG 59.856 61.905 0.00 0.00 0.00 4.30
742 758 0.478507 GGAGAGAGAGAGAGGGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
743 759 0.478507 GAGAGAGAGAGAGGGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
744 760 0.047176 AGAGAGAGAGAGGGAGGGGA 59.953 60.000 0.00 0.00 0.00 4.81
745 761 0.478507 GAGAGAGAGAGGGAGGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
988 1026 4.144727 GAGAGAGAGGGGGCGGGA 62.145 72.222 0.00 0.00 0.00 5.14
1695 1737 2.245532 CCGATCCGAATTTCGCGC 59.754 61.111 13.26 0.00 38.82 6.86
1863 1913 4.632538 ACGCTTATTAATTGAAGTGCCC 57.367 40.909 10.21 0.00 36.79 5.36
1904 1954 2.023673 CAGTTGCTTCCACTGGTTTGA 58.976 47.619 0.00 0.00 0.00 2.69
1929 1979 9.314321 GAGGATTTCGTTAGATTTGATCACTTA 57.686 33.333 0.00 0.00 0.00 2.24
1958 2008 4.097418 CTCTAGGTGGTATATGGGGGAAG 58.903 52.174 0.00 0.00 0.00 3.46
2006 2056 8.432013 TCTTTCTTTATATGGATGCTTCTGCTA 58.568 33.333 0.00 0.00 40.48 3.49
2022 2072 3.204158 TCTGCTAGTCTCTCCTCCTGAAT 59.796 47.826 0.00 0.00 0.00 2.57
2044 2094 1.821136 CAATCCTGCTTCACCTTTCCC 59.179 52.381 0.00 0.00 0.00 3.97
2225 2304 9.586435 GGATTTGTCTTTTAGGAATTGTTATGG 57.414 33.333 0.00 0.00 0.00 2.74
2228 2307 8.934023 TTGTCTTTTAGGAATTGTTATGGACT 57.066 30.769 0.00 0.00 0.00 3.85
2229 2308 8.934023 TGTCTTTTAGGAATTGTTATGGACTT 57.066 30.769 0.00 0.00 0.00 3.01
2301 2382 8.891720 ACTTCTCTTGAATTATTTGCAGATCTC 58.108 33.333 0.00 0.00 0.00 2.75
2380 2461 1.480954 TCGGATGGAAGGAGTAAGCAC 59.519 52.381 0.00 0.00 0.00 4.40
2442 2523 1.376609 GGGCGGTGGCTAAATGTCTG 61.377 60.000 0.00 0.00 39.81 3.51
2462 2543 1.067212 GTGTGTAGGTATCAGAGGGCG 59.933 57.143 0.00 0.00 0.00 6.13
2483 2564 2.102357 CCTGTGATCGTCGACCCG 59.898 66.667 10.58 0.00 0.00 5.28
2648 2729 3.289834 CTGCACTTGCGCCACCTT 61.290 61.111 4.18 0.00 45.83 3.50
2795 2919 6.798482 TGTTGCTTATTGAATATGCTTGAGG 58.202 36.000 19.52 0.00 36.98 3.86
2827 2951 7.556635 GCATAAGGAACACTTCTATTTTACCCT 59.443 37.037 0.00 0.00 40.64 4.34
2831 2955 6.731448 AGGAACACTTCTATTTTACCCTCTCT 59.269 38.462 0.00 0.00 0.00 3.10
2833 2957 5.735766 ACACTTCTATTTTACCCTCTCTGC 58.264 41.667 0.00 0.00 0.00 4.26
2867 2991 6.833342 AAGAAGTTTTTGCAAGCTAACATG 57.167 33.333 17.73 0.00 0.00 3.21
2892 3016 7.024768 GGCTTGCAAAAACGTCTTATATTGTA 58.975 34.615 0.00 0.00 0.00 2.41
3130 3264 4.514441 ACAGTACGAGTATATTCCTGTCCG 59.486 45.833 0.00 0.00 0.00 4.79
3134 3268 3.949754 ACGAGTATATTCCTGTCCGTGAA 59.050 43.478 0.00 0.00 0.00 3.18
3208 3651 8.622948 AAGACCTTTTAGATCACTACTTTTGG 57.377 34.615 0.00 0.00 0.00 3.28
3262 3717 3.307762 GGGAGTAGTTTGGAAGCAGATGT 60.308 47.826 0.00 0.00 0.00 3.06
3294 3749 3.615496 GTGTGTGCACTTTATACCCTACG 59.385 47.826 19.41 0.00 42.13 3.51
3352 3807 1.244019 GGTTGAGGTGGCGCTGAATT 61.244 55.000 7.64 0.00 0.00 2.17
3353 3808 0.598065 GTTGAGGTGGCGCTGAATTT 59.402 50.000 7.64 0.00 0.00 1.82
3365 3820 5.105797 TGGCGCTGAATTTCTTTCATTGTAT 60.106 36.000 7.64 0.00 43.30 2.29
3380 3836 7.517614 TTCATTGTATTTCTTAAGTGTGCCA 57.482 32.000 1.63 0.00 0.00 4.92
3401 3857 5.564651 GCCACACAATGCTGTTATGTAGTTT 60.565 40.000 0.00 0.00 31.64 2.66
3482 3990 1.680735 TGTTTTTGCTCCGCTGATGTT 59.319 42.857 0.00 0.00 0.00 2.71
3483 3991 2.053627 GTTTTTGCTCCGCTGATGTTG 58.946 47.619 0.00 0.00 0.00 3.33
3598 4107 3.243301 GCAGCATCATGAACCAATCGATT 60.243 43.478 4.39 4.39 0.00 3.34
3695 4207 8.836268 AAACATTTGTATCATGCATCAAAACT 57.164 26.923 13.37 2.04 34.32 2.66
3735 4247 5.010922 GGGGTTGATTGATAGCAATGCAATA 59.989 40.000 11.64 0.00 44.47 1.90
3768 4280 4.038042 TGTGAACCTAGAGTCACAACAGAG 59.962 45.833 19.99 0.00 39.72 3.35
3776 4288 6.430308 CCTAGAGTCACAACAGAGTAACTACA 59.570 42.308 0.00 0.00 0.00 2.74
3919 4439 1.549950 CCTTGGGGCTTAGGCTTTTCA 60.550 52.381 5.62 0.00 38.73 2.69
3967 4487 2.715763 AGGTTCCTACTTCCCTGACA 57.284 50.000 0.00 0.00 0.00 3.58
4038 4558 2.379972 GACTCCTTGCTGCTAGTCCTA 58.620 52.381 10.07 0.00 33.74 2.94
4077 4597 2.677875 CCTTTCACCCCCTGCTGC 60.678 66.667 0.00 0.00 0.00 5.25
4099 4619 2.014068 GCTGTGGTAGAATGGCACTCC 61.014 57.143 0.00 0.00 0.00 3.85
4108 4631 1.280421 GAATGGCACTCCTCAGTCCTT 59.720 52.381 0.00 0.00 0.00 3.36
4168 4691 2.475864 CGTGTTGCATTGGTGAAATTGG 59.524 45.455 0.00 0.00 0.00 3.16
4170 4693 2.158856 TGTTGCATTGGTGAAATTGGCA 60.159 40.909 0.00 0.00 0.00 4.92
4176 4699 4.823157 CATTGGTGAAATTGGCATTCTCA 58.177 39.130 2.81 0.00 0.00 3.27
4204 4727 8.980481 TCTCTTCATCTAAAAACATATTCCCC 57.020 34.615 0.00 0.00 0.00 4.81
4213 4736 5.760484 AAAACATATTCCCCTTGCACAAT 57.240 34.783 0.00 0.00 0.00 2.71
4421 4945 8.496707 TTTAATCGTCCTTGTATTTTACTCCC 57.503 34.615 0.00 0.00 0.00 4.30
4422 4946 5.952347 ATCGTCCTTGTATTTTACTCCCT 57.048 39.130 0.00 0.00 0.00 4.20
4423 4947 5.334724 TCGTCCTTGTATTTTACTCCCTC 57.665 43.478 0.00 0.00 0.00 4.30
4424 4948 4.161001 TCGTCCTTGTATTTTACTCCCTCC 59.839 45.833 0.00 0.00 0.00 4.30
4432 4956 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
4443 4967 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4550 5074 3.066342 CAGCTAATTGAAGCATCCCTGTG 59.934 47.826 3.15 0.00 45.30 3.66
4552 5076 3.445096 GCTAATTGAAGCATCCCTGTGTT 59.555 43.478 0.00 0.00 42.30 3.32
4568 5096 3.462982 TGTGTTGCACCACTACTAGTTG 58.537 45.455 15.86 0.59 36.30 3.16
4581 5109 5.347635 CACTACTAGTTGTTGCGCAATTCTA 59.652 40.000 27.79 23.61 39.55 2.10
4596 5124 6.019075 GCGCAATTCTATTGTACTACATGTGA 60.019 38.462 9.11 0.00 0.00 3.58
4639 5167 8.958119 TTTCTCTTCACTTTGTACTTGTGTAT 57.042 30.769 11.19 0.00 33.82 2.29
5072 5606 6.633500 TGAATACAACAGTGAAAGGGAAAG 57.367 37.500 0.00 0.00 0.00 2.62
5200 5734 7.090173 AGCATTGCGTATAAAAAGTTTGATGT 58.910 30.769 2.38 0.00 0.00 3.06
5235 5769 5.535030 GGTTACTTTGGTCAAAATCTGAGGT 59.465 40.000 0.00 0.00 33.60 3.85
5330 5864 7.202047 GGAGTGATCTGATAGGTGTTCCTTATT 60.202 40.741 0.00 0.00 42.12 1.40
5331 5865 8.783660 AGTGATCTGATAGGTGTTCCTTATTA 57.216 34.615 0.00 0.00 42.12 0.98
5332 5866 9.386122 AGTGATCTGATAGGTGTTCCTTATTAT 57.614 33.333 0.00 0.00 42.12 1.28
5669 6222 4.342772 CACGGCTGAGTATACAAAATTGC 58.657 43.478 5.50 0.84 0.00 3.56
5712 6269 8.494433 TCTCTTCCTTTGGTAAATATGCATACT 58.506 33.333 8.99 0.00 0.00 2.12
5713 6270 9.778741 CTCTTCCTTTGGTAAATATGCATACTA 57.221 33.333 8.99 0.80 0.00 1.82
5742 6299 6.969993 TTTTGTTGGAGCTTAAATGGTACT 57.030 33.333 0.00 0.00 0.00 2.73
5744 6301 5.499004 TGTTGGAGCTTAAATGGTACTCT 57.501 39.130 0.00 0.00 0.00 3.24
5788 6345 3.186345 TACTCCCACGGCTGAGTAG 57.814 57.895 0.00 0.00 41.80 2.57
5850 6529 9.081997 TGTTTTAGTGTGTTTGTTCAATCATTC 57.918 29.630 0.69 0.00 0.00 2.67
5856 6535 5.593909 TGTGTTTGTTCAATCATTCCAGTCT 59.406 36.000 0.69 0.00 0.00 3.24
5860 6539 7.448161 TGTTTGTTCAATCATTCCAGTCTGTAT 59.552 33.333 0.00 0.00 0.00 2.29
5875 6554 7.563556 TCCAGTCTGTATGTAGTCCATATTGAA 59.436 37.037 0.00 0.00 38.29 2.69
5877 6556 9.770097 CAGTCTGTATGTAGTCCATATTGAAAT 57.230 33.333 0.00 0.00 38.29 2.17
5964 6654 3.291809 TCTGATGTTTGCATTGCTGTG 57.708 42.857 10.49 0.00 35.07 3.66
6041 6772 3.990469 GCGCTGCTAGATTAGATTTGCTA 59.010 43.478 0.00 0.00 0.00 3.49
6085 6816 4.098807 GTGGTTTGATAAACAACACCTGGT 59.901 41.667 7.00 0.00 43.38 4.00
6093 6824 7.455058 TGATAAACAACACCTGGTAGTTACAT 58.545 34.615 0.00 2.99 0.00 2.29
6126 6857 4.081531 TCAAATTTCAATCAGGGGTCATGC 60.082 41.667 0.00 0.00 0.00 4.06
6143 6874 6.860080 GGTCATGCCCATTATCAATTATGAG 58.140 40.000 0.00 0.00 39.39 2.90
6147 6878 9.585369 TCATGCCCATTATCAATTATGAGTAAA 57.415 29.630 0.00 0.00 39.39 2.01
6181 6912 3.701040 ACAGAACAACCTGCATTTCAGTT 59.299 39.130 0.00 0.00 41.25 3.16
6183 6914 4.741676 CAGAACAACCTGCATTTCAGTTTC 59.258 41.667 0.00 0.00 41.25 2.78
6184 6915 3.733443 ACAACCTGCATTTCAGTTTCC 57.267 42.857 0.00 0.00 41.25 3.13
6185 6916 3.030291 ACAACCTGCATTTCAGTTTCCA 58.970 40.909 0.00 0.00 41.25 3.53
6186 6917 3.181476 ACAACCTGCATTTCAGTTTCCAC 60.181 43.478 0.00 0.00 41.25 4.02
6187 6918 2.949447 ACCTGCATTTCAGTTTCCACT 58.051 42.857 0.00 0.00 41.25 4.00
6188 6919 2.887152 ACCTGCATTTCAGTTTCCACTC 59.113 45.455 0.00 0.00 41.25 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.219344 CCGTTGTTAGTCGTTTCTTTCAAATTT 59.781 33.333 0.00 0.00 0.00 1.82
1 2 6.689669 CCGTTGTTAGTCGTTTCTTTCAAATT 59.310 34.615 0.00 0.00 0.00 1.82
2 3 6.037391 TCCGTTGTTAGTCGTTTCTTTCAAAT 59.963 34.615 0.00 0.00 0.00 2.32
3 4 5.350914 TCCGTTGTTAGTCGTTTCTTTCAAA 59.649 36.000 0.00 0.00 0.00 2.69
4 5 4.869297 TCCGTTGTTAGTCGTTTCTTTCAA 59.131 37.500 0.00 0.00 0.00 2.69
5 6 4.431809 TCCGTTGTTAGTCGTTTCTTTCA 58.568 39.130 0.00 0.00 0.00 2.69
6 7 4.607778 GCTCCGTTGTTAGTCGTTTCTTTC 60.608 45.833 0.00 0.00 0.00 2.62
7 8 3.246936 GCTCCGTTGTTAGTCGTTTCTTT 59.753 43.478 0.00 0.00 0.00 2.52
8 9 2.798847 GCTCCGTTGTTAGTCGTTTCTT 59.201 45.455 0.00 0.00 0.00 2.52
9 10 2.401351 GCTCCGTTGTTAGTCGTTTCT 58.599 47.619 0.00 0.00 0.00 2.52
10 11 1.458445 GGCTCCGTTGTTAGTCGTTTC 59.542 52.381 0.00 0.00 0.00 2.78
11 12 1.505425 GGCTCCGTTGTTAGTCGTTT 58.495 50.000 0.00 0.00 0.00 3.60
12 13 0.320160 GGGCTCCGTTGTTAGTCGTT 60.320 55.000 0.00 0.00 0.00 3.85
13 14 1.183676 AGGGCTCCGTTGTTAGTCGT 61.184 55.000 0.00 0.00 0.00 4.34
14 15 0.458025 GAGGGCTCCGTTGTTAGTCG 60.458 60.000 0.00 0.00 0.00 4.18
15 16 0.896226 AGAGGGCTCCGTTGTTAGTC 59.104 55.000 0.00 0.00 0.00 2.59
16 17 1.002087 CAAGAGGGCTCCGTTGTTAGT 59.998 52.381 0.00 0.00 0.00 2.24
17 18 1.726853 CAAGAGGGCTCCGTTGTTAG 58.273 55.000 0.00 0.00 0.00 2.34
18 19 0.321298 GCAAGAGGGCTCCGTTGTTA 60.321 55.000 0.00 0.00 0.00 2.41
19 20 1.600916 GCAAGAGGGCTCCGTTGTT 60.601 57.895 0.00 0.00 0.00 2.83
20 21 2.032681 GCAAGAGGGCTCCGTTGT 59.967 61.111 0.00 0.00 0.00 3.32
21 22 2.747855 GGCAAGAGGGCTCCGTTG 60.748 66.667 0.00 0.00 39.42 4.10
22 23 4.394712 CGGCAAGAGGGCTCCGTT 62.395 66.667 0.00 0.00 40.61 4.44
40 41 2.440980 GTGGATCCTGGCAAGGGC 60.441 66.667 14.23 0.00 44.62 5.19
41 42 2.276740 GGTGGATCCTGGCAAGGG 59.723 66.667 14.23 0.00 44.62 3.95
42 43 3.419858 AGGTGGATCCTGGCAAGG 58.580 61.111 14.23 0.00 46.19 3.61
50 51 0.832135 TATGGAGGCGAGGTGGATCC 60.832 60.000 4.20 4.20 0.00 3.36
51 52 0.605589 CTATGGAGGCGAGGTGGATC 59.394 60.000 0.00 0.00 0.00 3.36
52 53 1.476007 GCTATGGAGGCGAGGTGGAT 61.476 60.000 0.00 0.00 0.00 3.41
53 54 2.134287 GCTATGGAGGCGAGGTGGA 61.134 63.158 0.00 0.00 0.00 4.02
54 55 2.423446 GCTATGGAGGCGAGGTGG 59.577 66.667 0.00 0.00 0.00 4.61
55 56 2.423446 GGCTATGGAGGCGAGGTG 59.577 66.667 0.00 0.00 38.67 4.00
71 72 4.475444 TCTCCGGTGGCCCTAGGG 62.475 72.222 24.89 24.89 38.57 3.53
72 73 3.155167 GTCTCCGGTGGCCCTAGG 61.155 72.222 0.06 0.06 0.00 3.02
73 74 3.528370 CGTCTCCGGTGGCCCTAG 61.528 72.222 0.00 0.00 0.00 3.02
74 75 4.051167 TCGTCTCCGGTGGCCCTA 62.051 66.667 0.00 0.00 33.95 3.53
79 80 4.135153 CTGCCTCGTCTCCGGTGG 62.135 72.222 0.00 0.00 33.95 4.61
80 81 3.062466 TCTGCCTCGTCTCCGGTG 61.062 66.667 0.00 0.00 33.95 4.94
81 82 3.063084 GTCTGCCTCGTCTCCGGT 61.063 66.667 0.00 0.00 33.95 5.28
82 83 3.827898 GGTCTGCCTCGTCTCCGG 61.828 72.222 0.00 0.00 33.95 5.14
83 84 2.752238 AGGTCTGCCTCGTCTCCG 60.752 66.667 0.00 0.00 42.67 4.63
84 85 2.888863 CAGGTCTGCCTCGTCTCC 59.111 66.667 0.00 0.00 44.97 3.71
106 107 4.593864 GTGCCTCTCGCCGGATCC 62.594 72.222 5.05 0.00 36.24 3.36
107 108 2.852495 TTTGTGCCTCTCGCCGGATC 62.852 60.000 5.05 0.00 36.24 3.36
108 109 2.954684 TTTGTGCCTCTCGCCGGAT 61.955 57.895 5.05 0.00 36.24 4.18
109 110 3.621805 TTTGTGCCTCTCGCCGGA 61.622 61.111 5.05 0.00 36.24 5.14
110 111 3.423154 GTTTGTGCCTCTCGCCGG 61.423 66.667 0.00 0.00 36.24 6.13
111 112 3.423154 GGTTTGTGCCTCTCGCCG 61.423 66.667 0.00 0.00 36.24 6.46
112 113 2.180159 TAGGGTTTGTGCCTCTCGCC 62.180 60.000 0.00 0.00 36.24 5.54
113 114 0.741221 CTAGGGTTTGTGCCTCTCGC 60.741 60.000 0.00 0.00 38.31 5.03
114 115 0.741221 GCTAGGGTTTGTGCCTCTCG 60.741 60.000 0.00 0.00 0.00 4.04
115 116 0.615850 AGCTAGGGTTTGTGCCTCTC 59.384 55.000 0.00 0.00 0.00 3.20
116 117 1.068121 AAGCTAGGGTTTGTGCCTCT 58.932 50.000 0.00 0.00 0.00 3.69
117 118 1.911057 AAAGCTAGGGTTTGTGCCTC 58.089 50.000 0.00 0.00 31.83 4.70
118 119 2.381752 AAAAGCTAGGGTTTGTGCCT 57.618 45.000 0.00 0.00 33.41 4.75
135 136 8.413229 CAAATAAGTCTCTTTCTCCACCAAAAA 58.587 33.333 0.00 0.00 0.00 1.94
136 137 7.470009 GCAAATAAGTCTCTTTCTCCACCAAAA 60.470 37.037 0.00 0.00 0.00 2.44
137 138 6.016276 GCAAATAAGTCTCTTTCTCCACCAAA 60.016 38.462 0.00 0.00 0.00 3.28
138 139 5.473504 GCAAATAAGTCTCTTTCTCCACCAA 59.526 40.000 0.00 0.00 0.00 3.67
139 140 5.003804 GCAAATAAGTCTCTTTCTCCACCA 58.996 41.667 0.00 0.00 0.00 4.17
140 141 5.003804 TGCAAATAAGTCTCTTTCTCCACC 58.996 41.667 0.00 0.00 0.00 4.61
141 142 6.549952 CATGCAAATAAGTCTCTTTCTCCAC 58.450 40.000 0.00 0.00 0.00 4.02
142 143 5.124457 GCATGCAAATAAGTCTCTTTCTCCA 59.876 40.000 14.21 0.00 0.00 3.86
143 144 5.356470 AGCATGCAAATAAGTCTCTTTCTCC 59.644 40.000 21.98 0.00 0.00 3.71
144 145 6.434018 AGCATGCAAATAAGTCTCTTTCTC 57.566 37.500 21.98 0.00 0.00 2.87
145 146 7.555554 ACATAGCATGCAAATAAGTCTCTTTCT 59.444 33.333 21.98 0.00 0.00 2.52
146 147 7.701445 ACATAGCATGCAAATAAGTCTCTTTC 58.299 34.615 21.98 0.00 0.00 2.62
147 148 7.636150 ACATAGCATGCAAATAAGTCTCTTT 57.364 32.000 21.98 0.00 0.00 2.52
148 149 8.781196 CATACATAGCATGCAAATAAGTCTCTT 58.219 33.333 21.98 0.00 0.00 2.85
149 150 7.389884 CCATACATAGCATGCAAATAAGTCTCT 59.610 37.037 21.98 0.00 0.00 3.10
150 151 7.388776 TCCATACATAGCATGCAAATAAGTCTC 59.611 37.037 21.98 0.00 0.00 3.36
151 152 7.226441 TCCATACATAGCATGCAAATAAGTCT 58.774 34.615 21.98 0.00 0.00 3.24
152 153 7.439157 TCCATACATAGCATGCAAATAAGTC 57.561 36.000 21.98 0.00 0.00 3.01
153 154 7.094075 CCATCCATACATAGCATGCAAATAAGT 60.094 37.037 21.98 9.33 0.00 2.24
154 155 7.094075 ACCATCCATACATAGCATGCAAATAAG 60.094 37.037 21.98 3.24 0.00 1.73
155 156 6.720748 ACCATCCATACATAGCATGCAAATAA 59.279 34.615 21.98 2.20 0.00 1.40
156 157 6.247676 ACCATCCATACATAGCATGCAAATA 58.752 36.000 21.98 3.75 0.00 1.40
157 158 5.081728 ACCATCCATACATAGCATGCAAAT 58.918 37.500 21.98 10.20 0.00 2.32
158 159 4.472496 ACCATCCATACATAGCATGCAAA 58.528 39.130 21.98 7.96 0.00 3.68
159 160 4.103013 ACCATCCATACATAGCATGCAA 57.897 40.909 21.98 0.00 0.00 4.08
160 161 3.793819 ACCATCCATACATAGCATGCA 57.206 42.857 21.98 6.36 0.00 3.96
161 162 4.279169 ACAAACCATCCATACATAGCATGC 59.721 41.667 10.51 10.51 0.00 4.06
162 163 5.765176 CACAAACCATCCATACATAGCATG 58.235 41.667 0.00 0.00 0.00 4.06
163 164 4.279169 GCACAAACCATCCATACATAGCAT 59.721 41.667 0.00 0.00 0.00 3.79
164 165 3.631686 GCACAAACCATCCATACATAGCA 59.368 43.478 0.00 0.00 0.00 3.49
165 166 3.885297 AGCACAAACCATCCATACATAGC 59.115 43.478 0.00 0.00 0.00 2.97
166 167 7.663081 AGAATAGCACAAACCATCCATACATAG 59.337 37.037 0.00 0.00 0.00 2.23
167 168 7.517320 AGAATAGCACAAACCATCCATACATA 58.483 34.615 0.00 0.00 0.00 2.29
168 169 6.367983 AGAATAGCACAAACCATCCATACAT 58.632 36.000 0.00 0.00 0.00 2.29
169 170 5.754782 AGAATAGCACAAACCATCCATACA 58.245 37.500 0.00 0.00 0.00 2.29
170 171 6.058183 AGAGAATAGCACAAACCATCCATAC 58.942 40.000 0.00 0.00 0.00 2.39
171 172 6.252599 AGAGAATAGCACAAACCATCCATA 57.747 37.500 0.00 0.00 0.00 2.74
172 173 5.121380 AGAGAATAGCACAAACCATCCAT 57.879 39.130 0.00 0.00 0.00 3.41
173 174 4.574674 AGAGAATAGCACAAACCATCCA 57.425 40.909 0.00 0.00 0.00 3.41
174 175 5.703130 GGATAGAGAATAGCACAAACCATCC 59.297 44.000 0.00 0.00 0.00 3.51
175 176 5.406780 CGGATAGAGAATAGCACAAACCATC 59.593 44.000 0.00 0.00 0.00 3.51
176 177 5.070446 TCGGATAGAGAATAGCACAAACCAT 59.930 40.000 0.00 0.00 0.00 3.55
177 178 4.404394 TCGGATAGAGAATAGCACAAACCA 59.596 41.667 0.00 0.00 0.00 3.67
178 179 4.945246 TCGGATAGAGAATAGCACAAACC 58.055 43.478 0.00 0.00 0.00 3.27
179 180 6.043411 AGTTCGGATAGAGAATAGCACAAAC 58.957 40.000 0.00 0.00 0.00 2.93
180 181 6.222038 AGTTCGGATAGAGAATAGCACAAA 57.778 37.500 0.00 0.00 0.00 2.83
181 182 5.854010 AGTTCGGATAGAGAATAGCACAA 57.146 39.130 0.00 0.00 0.00 3.33
182 183 5.854010 AAGTTCGGATAGAGAATAGCACA 57.146 39.130 0.00 0.00 0.00 4.57
183 184 6.273825 TCAAAGTTCGGATAGAGAATAGCAC 58.726 40.000 0.00 0.00 0.00 4.40
184 185 6.465439 TCAAAGTTCGGATAGAGAATAGCA 57.535 37.500 0.00 0.00 0.00 3.49
185 186 7.148641 TCATCAAAGTTCGGATAGAGAATAGC 58.851 38.462 0.00 0.00 0.00 2.97
186 187 8.973378 GTTCATCAAAGTTCGGATAGAGAATAG 58.027 37.037 0.00 0.00 0.00 1.73
187 188 8.696374 AGTTCATCAAAGTTCGGATAGAGAATA 58.304 33.333 0.00 0.00 0.00 1.75
188 189 7.560368 AGTTCATCAAAGTTCGGATAGAGAAT 58.440 34.615 0.00 0.00 0.00 2.40
189 190 6.936279 AGTTCATCAAAGTTCGGATAGAGAA 58.064 36.000 0.00 0.00 0.00 2.87
190 191 6.531503 AGTTCATCAAAGTTCGGATAGAGA 57.468 37.500 0.00 0.00 0.00 3.10
191 192 6.256757 GGAAGTTCATCAAAGTTCGGATAGAG 59.743 42.308 5.01 0.00 44.87 2.43
192 193 6.106673 GGAAGTTCATCAAAGTTCGGATAGA 58.893 40.000 5.01 0.00 44.87 1.98
193 194 5.294552 GGGAAGTTCATCAAAGTTCGGATAG 59.705 44.000 5.01 0.00 44.87 2.08
194 195 5.183228 GGGAAGTTCATCAAAGTTCGGATA 58.817 41.667 5.01 0.00 44.87 2.59
195 196 4.010349 GGGAAGTTCATCAAAGTTCGGAT 58.990 43.478 5.01 0.00 44.87 4.18
196 197 3.408634 GGGAAGTTCATCAAAGTTCGGA 58.591 45.455 5.01 0.00 44.87 4.55
197 198 2.159627 CGGGAAGTTCATCAAAGTTCGG 59.840 50.000 5.01 0.00 44.87 4.30
198 199 2.806244 ACGGGAAGTTCATCAAAGTTCG 59.194 45.455 5.01 0.00 44.87 3.95
199 200 3.564225 ACACGGGAAGTTCATCAAAGTTC 59.436 43.478 5.01 0.00 43.72 3.01
200 201 3.551846 ACACGGGAAGTTCATCAAAGTT 58.448 40.909 5.01 0.00 33.06 2.66
201 202 3.208747 ACACGGGAAGTTCATCAAAGT 57.791 42.857 5.01 0.00 0.00 2.66
202 203 4.290155 CAAACACGGGAAGTTCATCAAAG 58.710 43.478 5.01 0.00 0.00 2.77
203 204 3.490078 GCAAACACGGGAAGTTCATCAAA 60.490 43.478 5.01 0.00 0.00 2.69
204 205 2.034053 GCAAACACGGGAAGTTCATCAA 59.966 45.455 5.01 0.00 0.00 2.57
205 206 1.606668 GCAAACACGGGAAGTTCATCA 59.393 47.619 5.01 0.00 0.00 3.07
206 207 1.606668 TGCAAACACGGGAAGTTCATC 59.393 47.619 5.01 0.00 0.00 2.92
207 208 1.686355 TGCAAACACGGGAAGTTCAT 58.314 45.000 5.01 0.00 0.00 2.57
208 209 1.336440 CATGCAAACACGGGAAGTTCA 59.664 47.619 5.01 0.00 0.00 3.18
209 210 1.606668 TCATGCAAACACGGGAAGTTC 59.393 47.619 0.00 0.00 0.00 3.01
210 211 1.686355 TCATGCAAACACGGGAAGTT 58.314 45.000 0.00 0.00 0.00 2.66
211 212 1.686355 TTCATGCAAACACGGGAAGT 58.314 45.000 0.00 0.00 0.00 3.01
212 213 3.302365 AATTCATGCAAACACGGGAAG 57.698 42.857 0.00 0.00 0.00 3.46
213 214 3.365465 CGTAATTCATGCAAACACGGGAA 60.365 43.478 0.00 0.00 0.00 3.97
214 215 2.160615 CGTAATTCATGCAAACACGGGA 59.839 45.455 0.00 0.00 0.00 5.14
215 216 2.095466 ACGTAATTCATGCAAACACGGG 60.095 45.455 0.00 0.00 32.29 5.28
216 217 3.120338 AGACGTAATTCATGCAAACACGG 60.120 43.478 0.00 0.00 32.29 4.94
217 218 3.840209 CAGACGTAATTCATGCAAACACG 59.160 43.478 0.00 0.00 33.55 4.49
218 219 4.158384 CCAGACGTAATTCATGCAAACAC 58.842 43.478 0.00 0.00 0.00 3.32
219 220 3.818210 ACCAGACGTAATTCATGCAAACA 59.182 39.130 0.00 0.00 0.00 2.83
220 221 4.419522 ACCAGACGTAATTCATGCAAAC 57.580 40.909 0.00 0.00 0.00 2.93
221 222 5.703592 ACTAACCAGACGTAATTCATGCAAA 59.296 36.000 0.00 0.00 0.00 3.68
222 223 5.242434 ACTAACCAGACGTAATTCATGCAA 58.758 37.500 0.00 0.00 0.00 4.08
223 224 4.827692 ACTAACCAGACGTAATTCATGCA 58.172 39.130 0.00 0.00 0.00 3.96
224 225 5.350365 TGAACTAACCAGACGTAATTCATGC 59.650 40.000 0.00 0.00 0.00 4.06
225 226 6.367695 TGTGAACTAACCAGACGTAATTCATG 59.632 38.462 0.00 0.00 0.00 3.07
226 227 6.367969 GTGTGAACTAACCAGACGTAATTCAT 59.632 38.462 0.00 0.00 0.00 2.57
227 228 5.693104 GTGTGAACTAACCAGACGTAATTCA 59.307 40.000 0.00 0.00 0.00 2.57
228 229 5.693104 TGTGTGAACTAACCAGACGTAATTC 59.307 40.000 0.00 0.00 31.32 2.17
229 230 5.603596 TGTGTGAACTAACCAGACGTAATT 58.396 37.500 0.00 0.00 31.32 1.40
230 231 5.204409 TGTGTGAACTAACCAGACGTAAT 57.796 39.130 0.00 0.00 31.32 1.89
231 232 4.652421 TGTGTGAACTAACCAGACGTAA 57.348 40.909 0.00 0.00 31.32 3.18
232 233 4.362279 GTTGTGTGAACTAACCAGACGTA 58.638 43.478 0.00 0.00 31.32 3.57
233 234 3.192466 GTTGTGTGAACTAACCAGACGT 58.808 45.455 0.00 0.00 31.32 4.34
234 235 2.217847 CGTTGTGTGAACTAACCAGACG 59.782 50.000 0.00 0.00 31.32 4.18
235 236 2.542595 CCGTTGTGTGAACTAACCAGAC 59.457 50.000 0.00 0.00 0.00 3.51
236 237 2.168936 ACCGTTGTGTGAACTAACCAGA 59.831 45.455 0.00 0.00 0.00 3.86
237 238 2.557317 ACCGTTGTGTGAACTAACCAG 58.443 47.619 0.00 0.00 0.00 4.00
238 239 2.695127 ACCGTTGTGTGAACTAACCA 57.305 45.000 0.00 0.00 0.00 3.67
239 240 5.482686 TTTAACCGTTGTGTGAACTAACC 57.517 39.130 0.00 0.00 0.00 2.85
240 241 6.968335 ACATTTTAACCGTTGTGTGAACTAAC 59.032 34.615 0.00 0.00 0.00 2.34
241 242 7.086230 ACATTTTAACCGTTGTGTGAACTAA 57.914 32.000 0.00 0.00 0.00 2.24
242 243 6.680874 ACATTTTAACCGTTGTGTGAACTA 57.319 33.333 0.00 0.00 0.00 2.24
243 244 5.570234 ACATTTTAACCGTTGTGTGAACT 57.430 34.783 0.00 0.00 0.00 3.01
244 245 6.129300 GCATACATTTTAACCGTTGTGTGAAC 60.129 38.462 3.32 0.00 34.35 3.18
245 246 5.915758 GCATACATTTTAACCGTTGTGTGAA 59.084 36.000 3.32 0.00 34.35 3.18
246 247 5.453648 GCATACATTTTAACCGTTGTGTGA 58.546 37.500 3.32 0.00 34.35 3.58
247 248 4.319639 CGCATACATTTTAACCGTTGTGTG 59.680 41.667 0.00 0.00 35.21 3.82
248 249 4.213694 TCGCATACATTTTAACCGTTGTGT 59.786 37.500 0.00 0.00 0.00 3.72
249 250 4.713806 TCGCATACATTTTAACCGTTGTG 58.286 39.130 0.00 0.00 0.00 3.33
250 251 4.670735 GCTCGCATACATTTTAACCGTTGT 60.671 41.667 0.00 0.00 0.00 3.32
251 252 3.783943 GCTCGCATACATTTTAACCGTTG 59.216 43.478 0.00 0.00 0.00 4.10
252 253 3.437395 TGCTCGCATACATTTTAACCGTT 59.563 39.130 0.00 0.00 0.00 4.44
253 254 3.004171 TGCTCGCATACATTTTAACCGT 58.996 40.909 0.00 0.00 0.00 4.83
254 255 3.063452 ACTGCTCGCATACATTTTAACCG 59.937 43.478 0.00 0.00 0.00 4.44
255 256 4.142687 ACACTGCTCGCATACATTTTAACC 60.143 41.667 0.00 0.00 0.00 2.85
256 257 4.969816 ACACTGCTCGCATACATTTTAAC 58.030 39.130 0.00 0.00 0.00 2.01
257 258 5.389778 CAACACTGCTCGCATACATTTTAA 58.610 37.500 0.00 0.00 0.00 1.52
258 259 4.142708 CCAACACTGCTCGCATACATTTTA 60.143 41.667 0.00 0.00 0.00 1.52
259 260 3.366273 CCAACACTGCTCGCATACATTTT 60.366 43.478 0.00 0.00 0.00 1.82
260 261 2.162208 CCAACACTGCTCGCATACATTT 59.838 45.455 0.00 0.00 0.00 2.32
261 262 1.739466 CCAACACTGCTCGCATACATT 59.261 47.619 0.00 0.00 0.00 2.71
262 263 1.066215 TCCAACACTGCTCGCATACAT 60.066 47.619 0.00 0.00 0.00 2.29
263 264 0.320050 TCCAACACTGCTCGCATACA 59.680 50.000 0.00 0.00 0.00 2.29
264 265 1.328680 CATCCAACACTGCTCGCATAC 59.671 52.381 0.00 0.00 0.00 2.39
265 266 1.206849 TCATCCAACACTGCTCGCATA 59.793 47.619 0.00 0.00 0.00 3.14
266 267 0.036105 TCATCCAACACTGCTCGCAT 60.036 50.000 0.00 0.00 0.00 4.73
267 268 0.950555 GTCATCCAACACTGCTCGCA 60.951 55.000 0.00 0.00 0.00 5.10
268 269 1.790387 GTCATCCAACACTGCTCGC 59.210 57.895 0.00 0.00 0.00 5.03
269 270 0.388520 TCGTCATCCAACACTGCTCG 60.389 55.000 0.00 0.00 0.00 5.03
270 271 1.071605 GTCGTCATCCAACACTGCTC 58.928 55.000 0.00 0.00 0.00 4.26
271 272 0.681733 AGTCGTCATCCAACACTGCT 59.318 50.000 0.00 0.00 0.00 4.24
272 273 1.071605 GAGTCGTCATCCAACACTGC 58.928 55.000 0.00 0.00 0.00 4.40
273 274 1.673033 GGGAGTCGTCATCCAACACTG 60.673 57.143 5.84 0.00 38.70 3.66
274 275 0.608640 GGGAGTCGTCATCCAACACT 59.391 55.000 5.84 0.00 38.70 3.55
275 276 0.736325 CGGGAGTCGTCATCCAACAC 60.736 60.000 5.84 0.00 38.70 3.32
276 277 1.589630 CGGGAGTCGTCATCCAACA 59.410 57.895 5.84 0.00 38.70 3.33
277 278 1.810030 GCGGGAGTCGTCATCCAAC 60.810 63.158 5.84 0.00 41.72 3.77
278 279 1.613317 ATGCGGGAGTCGTCATCCAA 61.613 55.000 5.84 0.00 41.72 3.53
279 280 2.016393 GATGCGGGAGTCGTCATCCA 62.016 60.000 5.84 0.00 41.71 3.41
280 281 1.300233 GATGCGGGAGTCGTCATCC 60.300 63.158 0.00 0.00 41.71 3.51
281 282 1.300233 GGATGCGGGAGTCGTCATC 60.300 63.158 8.52 8.52 44.11 2.92
282 283 1.402896 ATGGATGCGGGAGTCGTCAT 61.403 55.000 0.00 0.00 41.72 3.06
283 284 2.058001 ATGGATGCGGGAGTCGTCA 61.058 57.895 0.00 0.00 41.72 4.35
284 285 1.592669 CATGGATGCGGGAGTCGTC 60.593 63.158 0.00 0.00 41.72 4.20
285 286 1.899437 AACATGGATGCGGGAGTCGT 61.899 55.000 0.00 0.00 41.72 4.34
286 287 0.744414 AAACATGGATGCGGGAGTCG 60.744 55.000 0.00 0.00 42.76 4.18
287 288 1.401905 GAAAACATGGATGCGGGAGTC 59.598 52.381 0.00 0.00 0.00 3.36
288 289 1.271871 TGAAAACATGGATGCGGGAGT 60.272 47.619 0.00 0.00 0.00 3.85
289 290 1.133025 GTGAAAACATGGATGCGGGAG 59.867 52.381 0.00 0.00 0.00 4.30
290 291 1.173043 GTGAAAACATGGATGCGGGA 58.827 50.000 0.00 0.00 0.00 5.14
291 292 0.887247 TGTGAAAACATGGATGCGGG 59.113 50.000 0.00 0.00 0.00 6.13
292 293 1.541147 AGTGTGAAAACATGGATGCGG 59.459 47.619 0.00 0.00 0.00 5.69
293 294 2.587956 CAGTGTGAAAACATGGATGCG 58.412 47.619 0.00 0.00 0.00 4.73
294 295 2.297033 ACCAGTGTGAAAACATGGATGC 59.703 45.455 0.00 0.00 34.99 3.91
295 296 3.057315 GGACCAGTGTGAAAACATGGATG 60.057 47.826 0.00 0.00 34.99 3.51
296 297 3.157087 GGACCAGTGTGAAAACATGGAT 58.843 45.455 0.00 0.00 34.99 3.41
297 298 2.174639 AGGACCAGTGTGAAAACATGGA 59.825 45.455 0.00 0.00 34.99 3.41
298 299 2.586425 AGGACCAGTGTGAAAACATGG 58.414 47.619 0.00 0.00 37.07 3.66
299 300 3.303990 CGAAGGACCAGTGTGAAAACATG 60.304 47.826 0.00 0.00 0.00 3.21
300 301 2.878406 CGAAGGACCAGTGTGAAAACAT 59.122 45.455 0.00 0.00 0.00 2.71
301 302 2.285083 CGAAGGACCAGTGTGAAAACA 58.715 47.619 0.00 0.00 0.00 2.83
302 303 2.031683 CACGAAGGACCAGTGTGAAAAC 59.968 50.000 4.49 0.00 32.39 2.43
303 304 2.285083 CACGAAGGACCAGTGTGAAAA 58.715 47.619 4.49 0.00 32.39 2.29
304 305 1.208535 ACACGAAGGACCAGTGTGAAA 59.791 47.619 16.31 0.00 45.99 2.69
305 306 0.828022 ACACGAAGGACCAGTGTGAA 59.172 50.000 16.31 0.00 45.99 3.18
306 307 2.511818 ACACGAAGGACCAGTGTGA 58.488 52.632 16.31 0.00 45.99 3.58
309 310 1.779569 GTACACACGAAGGACCAGTG 58.220 55.000 11.63 11.63 41.28 3.66
321 322 0.814010 GGGCATCCATCCGTACACAC 60.814 60.000 0.00 0.00 0.00 3.82
322 323 1.268283 TGGGCATCCATCCGTACACA 61.268 55.000 0.00 0.00 38.32 3.72
323 324 1.524961 TGGGCATCCATCCGTACAC 59.475 57.895 0.00 0.00 38.32 2.90
324 325 4.058434 TGGGCATCCATCCGTACA 57.942 55.556 0.00 0.00 38.32 2.90
333 334 3.005367 CCCGTAAATTTACATGGGCATCC 59.995 47.826 24.27 0.00 30.84 3.51
334 335 3.634910 ACCCGTAAATTTACATGGGCATC 59.365 43.478 28.05 4.55 37.65 3.91
335 336 3.634910 GACCCGTAAATTTACATGGGCAT 59.365 43.478 28.05 17.10 37.65 4.40
336 337 3.018149 GACCCGTAAATTTACATGGGCA 58.982 45.455 28.05 0.00 37.65 5.36
337 338 3.018149 TGACCCGTAAATTTACATGGGC 58.982 45.455 28.05 25.93 37.65 5.36
338 339 3.064271 CGTGACCCGTAAATTTACATGGG 59.936 47.826 27.15 27.15 39.09 4.00
339 340 3.064271 CCGTGACCCGTAAATTTACATGG 59.936 47.826 24.27 23.55 33.28 3.66
340 341 3.933955 TCCGTGACCCGTAAATTTACATG 59.066 43.478 24.27 17.25 33.28 3.21
341 342 4.081531 TCTCCGTGACCCGTAAATTTACAT 60.082 41.667 24.27 11.63 33.28 2.29
342 343 3.257873 TCTCCGTGACCCGTAAATTTACA 59.742 43.478 24.27 5.43 33.28 2.41
343 344 3.614176 GTCTCCGTGACCCGTAAATTTAC 59.386 47.826 16.87 16.87 39.69 2.01
344 345 3.511146 AGTCTCCGTGACCCGTAAATTTA 59.489 43.478 0.00 0.00 46.46 1.40
345 346 2.301009 AGTCTCCGTGACCCGTAAATTT 59.699 45.455 0.00 0.00 46.46 1.82
346 347 1.897802 AGTCTCCGTGACCCGTAAATT 59.102 47.619 2.74 0.00 46.46 1.82
347 348 1.203994 CAGTCTCCGTGACCCGTAAAT 59.796 52.381 2.74 0.00 46.46 1.40
348 349 0.599558 CAGTCTCCGTGACCCGTAAA 59.400 55.000 2.74 0.00 46.46 2.01
349 350 1.870055 GCAGTCTCCGTGACCCGTAA 61.870 60.000 2.74 0.00 46.46 3.18
350 351 2.338015 GCAGTCTCCGTGACCCGTA 61.338 63.158 2.74 0.00 46.46 4.02
351 352 3.681835 GCAGTCTCCGTGACCCGT 61.682 66.667 2.74 0.00 46.46 5.28
352 353 4.436998 GGCAGTCTCCGTGACCCG 62.437 72.222 2.74 0.00 46.46 5.28
353 354 4.083862 GGGCAGTCTCCGTGACCC 62.084 72.222 2.74 0.00 46.46 4.46
354 355 2.584391 AAGGGCAGTCTCCGTGACC 61.584 63.158 2.74 0.00 46.46 4.02
355 356 1.374758 CAAGGGCAGTCTCCGTGAC 60.375 63.158 0.00 0.00 45.67 3.67
356 357 1.816863 GACAAGGGCAGTCTCCGTGA 61.817 60.000 3.30 0.00 37.25 4.35
357 358 1.374758 GACAAGGGCAGTCTCCGTG 60.375 63.158 0.00 0.00 39.20 4.94
358 359 2.584391 GGACAAGGGCAGTCTCCGT 61.584 63.158 4.40 0.00 36.29 4.69
359 360 2.232298 GAGGACAAGGGCAGTCTCCG 62.232 65.000 4.40 0.00 36.29 4.63
360 361 1.194781 TGAGGACAAGGGCAGTCTCC 61.195 60.000 4.40 0.00 36.29 3.71
361 362 0.036858 GTGAGGACAAGGGCAGTCTC 60.037 60.000 4.40 0.00 36.29 3.36
373 374 6.439675 ACTTCTAAAGATAGACGTGAGGAC 57.560 41.667 0.00 0.00 38.71 3.85
425 426 2.641815 CTCCATCCTAGGCCAGCTTAAT 59.358 50.000 5.01 0.00 0.00 1.40
482 491 1.225704 GGGGTGGAAGATGCTCTGG 59.774 63.158 0.00 0.00 0.00 3.86
493 502 4.041762 GGTGCCGAATGGGGTGGA 62.042 66.667 0.00 0.00 35.78 4.02
583 593 1.803519 CGGACGAGCTGAGTTGAGC 60.804 63.158 0.00 0.00 39.46 4.26
948 978 0.176680 CTGCGTGTCTGCCTATCCTT 59.823 55.000 0.00 0.00 0.00 3.36
949 979 0.684479 TCTGCGTGTCTGCCTATCCT 60.684 55.000 0.00 0.00 0.00 3.24
1695 1737 1.227089 CAGAGATCGCCCGTGGAAG 60.227 63.158 0.00 0.00 0.00 3.46
1863 1913 7.849804 ACTGTGCATAAATTAACCTAGACAG 57.150 36.000 0.00 0.00 34.58 3.51
1904 1954 9.838339 ATAAGTGATCAAATCTAACGAAATCCT 57.162 29.630 0.00 0.00 0.00 3.24
1929 1979 2.383442 ATACCACCTAGAGCGGACAT 57.617 50.000 0.00 0.00 0.00 3.06
1958 2008 3.010413 GCCCAAAGATGTGGCTGGC 62.010 63.158 0.00 0.00 38.86 4.85
2006 2056 3.481559 TTGGATTCAGGAGGAGAGACT 57.518 47.619 0.00 0.00 0.00 3.24
2022 2072 2.555227 GGAAAGGTGAAGCAGGATTGGA 60.555 50.000 0.00 0.00 0.00 3.53
2044 2094 4.528504 CAATACAGGAGTAGATCGACACG 58.471 47.826 8.75 0.00 32.86 4.49
2301 2382 2.676839 CAAGCCAGAGAGCACATACAAG 59.323 50.000 0.00 0.00 34.23 3.16
2442 2523 1.067212 CGCCCTCTGATACCTACACAC 59.933 57.143 0.00 0.00 0.00 3.82
2462 2543 0.802607 GGTCGACGATCACAGGCTTC 60.803 60.000 9.92 0.00 0.00 3.86
2552 2633 6.430000 GGAAACATTTACCAGTGAAGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2605 2686 8.608844 AAAAACAAAGGACACAAACAACATAA 57.391 26.923 0.00 0.00 0.00 1.90
2795 2919 1.839424 AGTGTTCCTTATGCAAGCCC 58.161 50.000 0.00 0.00 0.00 5.19
2827 2951 4.721776 ACTTCTTATATTGTGGGGCAGAGA 59.278 41.667 0.00 0.00 0.00 3.10
2831 2955 6.696411 CAAAAACTTCTTATATTGTGGGGCA 58.304 36.000 0.00 0.00 0.00 5.36
2833 2957 6.696411 TGCAAAAACTTCTTATATTGTGGGG 58.304 36.000 0.00 0.00 0.00 4.96
2867 2991 5.861787 ACAATATAAGACGTTTTTGCAAGCC 59.138 36.000 0.00 0.00 0.00 4.35
2892 3016 3.764237 AACACAAAGATGTACCGTCCT 57.236 42.857 0.00 0.00 37.82 3.85
2991 3121 9.941664 CAAGTAGGCAATAAATGTTCTAATCAG 57.058 33.333 0.00 0.00 0.00 2.90
3007 3137 8.700439 AGTAAAATTAGGTTTCAAGTAGGCAA 57.300 30.769 0.00 0.00 0.00 4.52
3130 3264 5.484173 TCATTTCTTGACACACTGTTCAC 57.516 39.130 0.00 0.00 0.00 3.18
3134 3268 8.902540 TTACTAATCATTTCTTGACACACTGT 57.097 30.769 0.00 0.00 37.11 3.55
3287 3742 1.076677 TCCTCTTTCTGGACGTAGGGT 59.923 52.381 0.00 0.00 0.00 4.34
3352 3807 9.677567 GCACACTTAAGAAATACAATGAAAGAA 57.322 29.630 10.09 0.00 0.00 2.52
3353 3808 8.296713 GGCACACTTAAGAAATACAATGAAAGA 58.703 33.333 10.09 0.00 0.00 2.52
3380 3836 5.183140 GGGAAACTACATAACAGCATTGTGT 59.817 40.000 7.95 7.95 37.67 3.72
3401 3857 2.041620 AGCAGACTTTTTATGCCTGGGA 59.958 45.455 0.00 0.00 40.89 4.37
3442 3898 5.806654 ACATAACACCAGCCTTGAAATTT 57.193 34.783 0.00 0.00 0.00 1.82
3454 3962 3.634568 CGGAGCAAAAACATAACACCA 57.365 42.857 0.00 0.00 0.00 4.17
3694 4206 5.070446 TCAACCCCAAGTGCAGTATATAGAG 59.930 44.000 0.00 0.00 0.00 2.43
3695 4207 4.966168 TCAACCCCAAGTGCAGTATATAGA 59.034 41.667 0.00 0.00 0.00 1.98
3735 4247 6.998074 TGACTCTAGGTTCACAACAATTGATT 59.002 34.615 13.59 0.00 0.00 2.57
3768 4280 4.695455 TGGCTTTCTTGAGCATGTAGTTAC 59.305 41.667 0.00 0.00 44.49 2.50
3776 4288 0.877071 CACGTGGCTTTCTTGAGCAT 59.123 50.000 7.95 0.00 44.49 3.79
3838 4358 6.219417 TGATTCAAGCAAAGAAGAACCAAA 57.781 33.333 0.00 0.00 0.00 3.28
3919 4439 7.068103 TCTGTCAGGAATTGTATTTTGTGTTGT 59.932 33.333 0.00 0.00 0.00 3.32
3967 4487 5.869579 ACGGAATAGTATTGGATCAGCATT 58.130 37.500 0.00 0.00 0.00 3.56
4038 4558 2.569404 GGGAAGAGTCTGACCATTGACT 59.431 50.000 15.53 0.00 45.06 3.41
4077 4597 1.078497 TGCCATTCTACCACAGCCG 60.078 57.895 0.00 0.00 0.00 5.52
4099 4619 1.473278 GGTACGGAGACAAGGACTGAG 59.527 57.143 0.00 0.00 0.00 3.35
4108 4631 1.228769 AGGCACAGGTACGGAGACA 60.229 57.895 0.00 0.00 0.00 3.41
4168 4691 7.840342 TTTAGATGAAGAGAAGTGAGAATGC 57.160 36.000 0.00 0.00 0.00 3.56
4170 4693 9.784531 TGTTTTTAGATGAAGAGAAGTGAGAAT 57.215 29.630 0.00 0.00 0.00 2.40
4204 4727 4.619760 CACTAGCAACATCAATTGTGCAAG 59.380 41.667 17.85 4.18 38.99 4.01
4421 4945 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4422 4946 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4423 4947 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4424 4948 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4454 4978 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
4456 4980 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4457 4981 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4460 4984 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4461 4985 8.609176 TCCATAATATAAGAGCGTTTTTGACAC 58.391 33.333 0.00 0.00 0.00 3.67
4462 4986 8.609176 GTCCATAATATAAGAGCGTTTTTGACA 58.391 33.333 0.00 0.00 0.00 3.58
4463 4987 7.792508 CGTCCATAATATAAGAGCGTTTTTGAC 59.207 37.037 0.00 0.00 0.00 3.18
4464 4988 7.042321 CCGTCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4465 4989 7.042321 TCCGTCCATAATATAAGAGCGTTTTTG 60.042 37.037 0.00 0.00 0.00 2.44
4466 4990 6.987992 TCCGTCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
4467 4991 6.518493 TCCGTCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
4468 4992 6.092955 TCCGTCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
4469 4993 5.336531 CCTCCGTCCATAATATAAGAGCGTT 60.337 44.000 0.00 0.00 0.00 4.84
4470 4994 4.158025 CCTCCGTCCATAATATAAGAGCGT 59.842 45.833 0.00 0.00 0.00 5.07
4471 4995 4.440250 CCCTCCGTCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4472 4996 4.710375 TCCCTCCGTCCATAATATAAGAGC 59.290 45.833 0.00 0.00 0.00 4.09
4550 5074 3.303791 GCAACAACTAGTAGTGGTGCAAC 60.304 47.826 25.75 0.00 38.72 4.17
4552 5076 2.489971 GCAACAACTAGTAGTGGTGCA 58.510 47.619 25.75 0.00 38.72 4.57
4568 5096 6.102006 TGTAGTACAATAGAATTGCGCAAC 57.898 37.500 27.64 14.25 0.00 4.17
4611 5139 8.739972 ACACAAGTACAAAGTGAAGAGAAAAAT 58.260 29.630 16.11 0.00 37.05 1.82
4612 5140 8.106247 ACACAAGTACAAAGTGAAGAGAAAAA 57.894 30.769 16.11 0.00 37.05 1.94
4620 5148 9.163899 TGTAACAATACACAAGTACAAAGTGAA 57.836 29.630 16.11 0.00 37.11 3.18
4623 5151 9.116067 ACATGTAACAATACACAAGTACAAAGT 57.884 29.630 0.00 0.00 44.47 2.66
4624 5152 9.944663 AACATGTAACAATACACAAGTACAAAG 57.055 29.630 0.00 0.00 44.47 2.77
4628 5156 8.687301 GCAAAACATGTAACAATACACAAGTAC 58.313 33.333 0.00 0.00 44.47 2.73
4629 5157 8.625651 AGCAAAACATGTAACAATACACAAGTA 58.374 29.630 0.00 0.00 44.47 2.24
4630 5158 7.488322 AGCAAAACATGTAACAATACACAAGT 58.512 30.769 0.00 0.00 44.47 3.16
4631 5159 7.114811 GGAGCAAAACATGTAACAATACACAAG 59.885 37.037 0.00 0.00 44.47 3.16
4639 5167 8.363390 TGATAAATGGAGCAAAACATGTAACAA 58.637 29.630 0.00 0.00 0.00 2.83
4699 5233 6.349280 CCCATATGCAGTATTCAATAAACCGG 60.349 42.308 0.00 0.00 0.00 5.28
5193 5727 4.463050 AACCTACCCTGGAAACATCAAA 57.537 40.909 0.00 0.00 41.51 2.69
5200 5734 3.723154 ACCAAAGTAACCTACCCTGGAAA 59.277 43.478 0.00 0.00 35.53 3.13
5235 5769 8.513199 CAGAATGACTAGCTAGTGGCTCAACA 62.513 46.154 30.70 19.45 44.47 3.33
5330 5864 7.062749 ACTCAACTCAAAGTGGTTGTCTATA 57.937 36.000 0.00 0.00 42.15 1.31
5331 5865 5.930135 ACTCAACTCAAAGTGGTTGTCTAT 58.070 37.500 0.00 0.00 42.15 1.98
5332 5866 5.353394 ACTCAACTCAAAGTGGTTGTCTA 57.647 39.130 0.00 0.00 42.15 2.59
5389 5924 6.984474 GCTATTAGTGGTGTATAAACTCTGCA 59.016 38.462 0.00 0.00 0.00 4.41
5669 6222 4.213564 AGAGAGGAAACAGTGCATAAGG 57.786 45.455 0.00 0.00 0.00 2.69
5712 6269 9.921637 CCATTTAAGCTCCAACAAAAACTTATA 57.078 29.630 0.00 0.00 0.00 0.98
5713 6270 8.428852 ACCATTTAAGCTCCAACAAAAACTTAT 58.571 29.630 0.00 0.00 0.00 1.73
5742 6299 9.725019 AACATCTTATAATTGTGAACAGACAGA 57.275 29.630 2.86 0.00 0.00 3.41
5744 6301 9.725019 AGAACATCTTATAATTGTGAACAGACA 57.275 29.630 2.86 0.00 0.00 3.41
5832 6389 5.593909 AGACTGGAATGATTGAACAAACACA 59.406 36.000 0.03 0.00 0.00 3.72
5833 6390 5.916883 CAGACTGGAATGATTGAACAAACAC 59.083 40.000 0.00 0.00 0.00 3.32
5850 6529 7.290110 TCAATATGGACTACATACAGACTGG 57.710 40.000 7.51 0.00 44.41 4.00
5887 6566 7.931948 ACTCCCTTCGTTCATAATTATAAGGTG 59.068 37.037 17.16 13.30 31.98 4.00
5889 6568 9.640963 CTACTCCCTTCGTTCATAATTATAAGG 57.359 37.037 13.70 13.70 33.37 2.69
5890 6569 9.640963 CCTACTCCCTTCGTTCATAATTATAAG 57.359 37.037 0.00 0.00 0.00 1.73
6143 6874 4.570772 TGTTCTGTTGAGCTGAGTGTTTAC 59.429 41.667 0.00 0.00 0.00 2.01
6147 6878 2.939103 GTTGTTCTGTTGAGCTGAGTGT 59.061 45.455 0.00 0.00 0.00 3.55
6156 6887 3.698539 TGAAATGCAGGTTGTTCTGTTGA 59.301 39.130 0.00 0.00 37.12 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.