Multiple sequence alignment - TraesCS7D01G348100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G348100 chr7D 100.000 5075 0 0 1 5075 447756248 447761322 0.000000e+00 9372
1 TraesCS7D01G348100 chr7D 83.417 796 103 19 244 1011 611665590 611664796 0.000000e+00 712
2 TraesCS7D01G348100 chr7D 81.304 920 113 33 1303 2198 480831250 480830366 0.000000e+00 691
3 TraesCS7D01G348100 chr7D 85.496 262 27 8 3408 3662 447759604 447759861 3.900000e-66 263
4 TraesCS7D01G348100 chr7D 85.496 262 27 8 3357 3614 447759655 447759909 3.900000e-66 263
5 TraesCS7D01G348100 chr7D 86.275 102 11 3 3515 3613 447759609 447759710 1.930000e-19 108
6 TraesCS7D01G348100 chr7D 86.275 102 11 3 3362 3463 447759762 447759860 1.930000e-19 108
7 TraesCS7D01G348100 chr7B 92.280 1684 80 13 2520 4184 465114938 465116590 0.000000e+00 2344
8 TraesCS7D01G348100 chr7B 92.847 1356 55 18 1007 2343 465113509 465114841 0.000000e+00 1929
9 TraesCS7D01G348100 chr7B 95.223 649 23 4 4260 4906 465116593 465117235 0.000000e+00 1020
10 TraesCS7D01G348100 chr7B 82.692 780 99 18 259 1007 418864704 418863930 0.000000e+00 660
11 TraesCS7D01G348100 chr7B 82.598 793 90 23 1303 2077 506548704 506547942 0.000000e+00 656
12 TraesCS7D01G348100 chr7B 83.633 611 90 10 403 1007 429270743 429271349 2.650000e-157 566
13 TraesCS7D01G348100 chr7B 95.882 170 3 2 4906 5075 465117267 465117432 6.470000e-69 272
14 TraesCS7D01G348100 chr7B 83.846 260 35 7 3357 3614 465115798 465116052 1.830000e-59 241
15 TraesCS7D01G348100 chr7B 83.784 259 33 8 3411 3663 465115750 465116005 2.360000e-58 237
16 TraesCS7D01G348100 chr7B 91.241 137 10 2 3357 3493 465115849 465115983 8.680000e-43 185
17 TraesCS7D01G348100 chr7B 90.625 128 12 0 3103 3230 465115568 465115695 2.430000e-38 171
18 TraesCS7D01G348100 chr7B 89.844 128 13 0 3462 3589 465115750 465115877 1.130000e-36 165
19 TraesCS7D01G348100 chr7B 89.474 114 9 3 3166 3276 465115502 465115615 1.900000e-29 141
20 TraesCS7D01G348100 chr7A 92.320 638 38 5 4259 4892 547956140 547955510 0.000000e+00 896
21 TraesCS7D01G348100 chr7A 80.894 1141 125 49 1060 2166 547959854 547958773 0.000000e+00 813
22 TraesCS7D01G348100 chr7A 82.161 796 111 19 240 1007 209167883 209168675 0.000000e+00 654
23 TraesCS7D01G348100 chr7A 81.696 743 108 12 175 908 559196525 559195802 1.220000e-165 593
24 TraesCS7D01G348100 chr7A 81.132 795 100 25 1303 2077 548036925 548036161 4.380000e-165 592
25 TraesCS7D01G348100 chr7A 77.358 689 82 45 3516 4187 547956770 547956139 1.750000e-89 340
26 TraesCS7D01G348100 chr7A 83.442 308 35 8 2418 2723 547957793 547957500 6.470000e-69 272
27 TraesCS7D01G348100 chr7A 81.073 354 47 11 3216 3565 548033929 548033592 1.080000e-66 265
28 TraesCS7D01G348100 chr7A 83.260 227 35 3 3229 3455 547956904 547956681 6.660000e-49 206
29 TraesCS7D01G348100 chr7A 87.059 170 8 9 4906 5075 547954092 547953937 4.040000e-41 180
30 TraesCS7D01G348100 chr7A 80.000 125 5 11 4185 4293 704610885 704611005 1.960000e-09 75
31 TraesCS7D01G348100 chr4D 82.256 851 123 12 169 995 48062206 48061360 0.000000e+00 710
32 TraesCS7D01G348100 chr6B 83.083 798 104 15 239 1007 599981898 599981103 0.000000e+00 697
33 TraesCS7D01G348100 chr6B 82.500 800 111 14 236 1007 703666357 703667155 0.000000e+00 675
34 TraesCS7D01G348100 chr6B 93.023 86 4 1 4174 4259 668427342 668427425 1.920000e-24 124
35 TraesCS7D01G348100 chr6B 97.183 71 2 0 4194 4264 262114384 262114454 2.480000e-23 121
36 TraesCS7D01G348100 chr6B 91.765 85 2 4 4178 4260 553057211 553057130 4.150000e-21 113
37 TraesCS7D01G348100 chr6D 81.975 871 104 24 169 1007 6776597 6777446 0.000000e+00 689
38 TraesCS7D01G348100 chr6D 96.104 77 1 1 4186 4262 469492339 469492413 1.920000e-24 124
39 TraesCS7D01G348100 chr6D 96.104 77 1 1 4186 4262 469511147 469511221 1.920000e-24 124
40 TraesCS7D01G348100 chr2D 81.860 871 105 24 169 1007 12737599 12736750 0.000000e+00 684
41 TraesCS7D01G348100 chr2D 94.872 78 1 2 4186 4263 376701261 376701187 8.930000e-23 119
42 TraesCS7D01G348100 chr2D 93.671 79 1 3 4182 4260 327614823 327614897 1.150000e-21 115
43 TraesCS7D01G348100 chr3D 82.576 792 109 12 244 1008 528948877 528948088 0.000000e+00 671
44 TraesCS7D01G348100 chr3D 90.805 87 4 3 4185 4271 555598244 555598326 4.150000e-21 113
45 TraesCS7D01G348100 chr1D 82.554 791 109 14 244 1007 329506516 329507304 0.000000e+00 669
46 TraesCS7D01G348100 chr5A 82.147 801 109 20 238 1007 565492669 565491872 0.000000e+00 656
47 TraesCS7D01G348100 chr5A 81.273 801 119 15 236 1008 357056337 357057134 2.010000e-173 619
48 TraesCS7D01G348100 chrUn 81.932 797 112 17 240 1007 292875031 292875824 0.000000e+00 645
49 TraesCS7D01G348100 chrUn 86.039 308 34 6 171 476 403266698 403266998 6.340000e-84 322
50 TraesCS7D01G348100 chrUn 85.714 308 36 5 171 476 15720509 15720208 8.200000e-83 318
51 TraesCS7D01G348100 chr2A 81.795 791 112 17 246 1007 677114207 677113420 7.170000e-178 634
52 TraesCS7D01G348100 chr2A 81.542 791 114 17 246 1007 677075357 677074570 1.550000e-174 623
53 TraesCS7D01G348100 chr6A 81.281 796 119 20 240 1007 590097494 590096701 7.220000e-173 617
54 TraesCS7D01G348100 chr5D 84.106 604 72 10 171 765 518924293 518924881 3.430000e-156 562
55 TraesCS7D01G348100 chr1B 81.138 668 120 5 244 908 415957658 415956994 9.670000e-147 531
56 TraesCS7D01G348100 chr4A 80.660 667 120 8 243 901 673441057 673441722 4.530000e-140 508
57 TraesCS7D01G348100 chr2B 91.111 90 1 5 4177 4261 762916459 762916546 1.150000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G348100 chr7D 447756248 447761322 5074 False 2022.800000 9372 88.7084 1 5075 5 chr7D.!!$F1 5074
1 TraesCS7D01G348100 chr7D 611664796 611665590 794 True 712.000000 712 83.4170 244 1011 1 chr7D.!!$R2 767
2 TraesCS7D01G348100 chr7D 480830366 480831250 884 True 691.000000 691 81.3040 1303 2198 1 chr7D.!!$R1 895
3 TraesCS7D01G348100 chr7B 465113509 465117432 3923 False 670.500000 2344 90.5046 1007 5075 10 chr7B.!!$F2 4068
4 TraesCS7D01G348100 chr7B 418863930 418864704 774 True 660.000000 660 82.6920 259 1007 1 chr7B.!!$R1 748
5 TraesCS7D01G348100 chr7B 506547942 506548704 762 True 656.000000 656 82.5980 1303 2077 1 chr7B.!!$R2 774
6 TraesCS7D01G348100 chr7B 429270743 429271349 606 False 566.000000 566 83.6330 403 1007 1 chr7B.!!$F1 604
7 TraesCS7D01G348100 chr7A 209167883 209168675 792 False 654.000000 654 82.1610 240 1007 1 chr7A.!!$F1 767
8 TraesCS7D01G348100 chr7A 559195802 559196525 723 True 593.000000 593 81.6960 175 908 1 chr7A.!!$R1 733
9 TraesCS7D01G348100 chr7A 547953937 547959854 5917 True 451.166667 896 84.0555 1060 5075 6 chr7A.!!$R2 4015
10 TraesCS7D01G348100 chr7A 548033592 548036925 3333 True 428.500000 592 81.1025 1303 3565 2 chr7A.!!$R3 2262
11 TraesCS7D01G348100 chr4D 48061360 48062206 846 True 710.000000 710 82.2560 169 995 1 chr4D.!!$R1 826
12 TraesCS7D01G348100 chr6B 599981103 599981898 795 True 697.000000 697 83.0830 239 1007 1 chr6B.!!$R2 768
13 TraesCS7D01G348100 chr6B 703666357 703667155 798 False 675.000000 675 82.5000 236 1007 1 chr6B.!!$F3 771
14 TraesCS7D01G348100 chr6D 6776597 6777446 849 False 689.000000 689 81.9750 169 1007 1 chr6D.!!$F1 838
15 TraesCS7D01G348100 chr2D 12736750 12737599 849 True 684.000000 684 81.8600 169 1007 1 chr2D.!!$R1 838
16 TraesCS7D01G348100 chr3D 528948088 528948877 789 True 671.000000 671 82.5760 244 1008 1 chr3D.!!$R1 764
17 TraesCS7D01G348100 chr1D 329506516 329507304 788 False 669.000000 669 82.5540 244 1007 1 chr1D.!!$F1 763
18 TraesCS7D01G348100 chr5A 565491872 565492669 797 True 656.000000 656 82.1470 238 1007 1 chr5A.!!$R1 769
19 TraesCS7D01G348100 chr5A 357056337 357057134 797 False 619.000000 619 81.2730 236 1008 1 chr5A.!!$F1 772
20 TraesCS7D01G348100 chrUn 292875031 292875824 793 False 645.000000 645 81.9320 240 1007 1 chrUn.!!$F1 767
21 TraesCS7D01G348100 chr2A 677113420 677114207 787 True 634.000000 634 81.7950 246 1007 1 chr2A.!!$R2 761
22 TraesCS7D01G348100 chr2A 677074570 677075357 787 True 623.000000 623 81.5420 246 1007 1 chr2A.!!$R1 761
23 TraesCS7D01G348100 chr6A 590096701 590097494 793 True 617.000000 617 81.2810 240 1007 1 chr6A.!!$R1 767
24 TraesCS7D01G348100 chr5D 518924293 518924881 588 False 562.000000 562 84.1060 171 765 1 chr5D.!!$F1 594
25 TraesCS7D01G348100 chr1B 415956994 415957658 664 True 531.000000 531 81.1380 244 908 1 chr1B.!!$R1 664
26 TraesCS7D01G348100 chr4A 673441057 673441722 665 False 508.000000 508 80.6600 243 901 1 chr4A.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.250727 CGAATGCCGATATGGGGGTT 60.251 55.000 5.85 0.00 41.76 4.11 F
662 685 0.251916 TGGTTGATGGATGACGGGTC 59.748 55.000 0.00 0.00 0.00 4.46 F
1113 1162 1.008309 GCGAGTCCACGAGGCTATC 60.008 63.158 0.00 0.00 35.09 2.08 F
2663 4484 0.689745 AGATGGCCTTGTACCGCCTA 60.690 55.000 3.32 4.54 45.90 3.93 F
3464 5804 0.030235 TGCCCGACGACATAGATTCG 59.970 55.000 0.00 0.00 42.36 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1878 0.027063 GCGGAATTGCATTGCATTGC 59.973 50.0 23.33 23.33 38.76 3.56 R
2113 2238 0.178975 ACAAAGGGGTTGGCGATGAA 60.179 50.0 0.00 0.00 41.97 2.57 R
2788 4654 0.250901 TGCCTGCAAGAAAGTCCCTC 60.251 55.0 0.00 0.00 34.07 4.30 R
3614 6005 0.379669 CGACATCTTCAAGCATGGGC 59.620 55.0 0.00 0.00 41.61 5.36 R
4966 8820 1.083489 TAAGCAGTATTGGCACGCAC 58.917 50.0 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.089105 CCGCTTTAACCTTGCCCA 57.911 55.556 0.00 0.00 0.00 5.36
18 19 2.346597 CCGCTTTAACCTTGCCCAA 58.653 52.632 0.00 0.00 0.00 4.12
19 20 0.676736 CCGCTTTAACCTTGCCCAAA 59.323 50.000 0.00 0.00 0.00 3.28
20 21 1.275010 CCGCTTTAACCTTGCCCAAAT 59.725 47.619 0.00 0.00 0.00 2.32
21 22 2.494073 CCGCTTTAACCTTGCCCAAATA 59.506 45.455 0.00 0.00 0.00 1.40
22 23 3.056465 CCGCTTTAACCTTGCCCAAATAA 60.056 43.478 0.00 0.00 0.00 1.40
23 24 4.561105 CGCTTTAACCTTGCCCAAATAAA 58.439 39.130 0.00 0.00 0.00 1.40
24 25 4.991687 CGCTTTAACCTTGCCCAAATAAAA 59.008 37.500 0.00 0.00 0.00 1.52
25 26 5.107259 CGCTTTAACCTTGCCCAAATAAAAC 60.107 40.000 0.00 0.00 0.00 2.43
26 27 5.995282 GCTTTAACCTTGCCCAAATAAAACT 59.005 36.000 0.00 0.00 0.00 2.66
27 28 7.156000 GCTTTAACCTTGCCCAAATAAAACTA 58.844 34.615 0.00 0.00 0.00 2.24
28 29 7.658167 GCTTTAACCTTGCCCAAATAAAACTAA 59.342 33.333 0.00 0.00 0.00 2.24
29 30 9.549078 CTTTAACCTTGCCCAAATAAAACTAAA 57.451 29.630 0.00 0.00 0.00 1.85
30 31 8.890124 TTAACCTTGCCCAAATAAAACTAAAC 57.110 30.769 0.00 0.00 0.00 2.01
31 32 6.487299 ACCTTGCCCAAATAAAACTAAACA 57.513 33.333 0.00 0.00 0.00 2.83
32 33 7.073457 ACCTTGCCCAAATAAAACTAAACAT 57.927 32.000 0.00 0.00 0.00 2.71
33 34 6.934083 ACCTTGCCCAAATAAAACTAAACATG 59.066 34.615 0.00 0.00 0.00 3.21
34 35 6.934083 CCTTGCCCAAATAAAACTAAACATGT 59.066 34.615 0.00 0.00 0.00 3.21
35 36 8.091449 CCTTGCCCAAATAAAACTAAACATGTA 58.909 33.333 0.00 0.00 0.00 2.29
36 37 9.482627 CTTGCCCAAATAAAACTAAACATGTAA 57.517 29.630 0.00 0.00 0.00 2.41
37 38 9.482627 TTGCCCAAATAAAACTAAACATGTAAG 57.517 29.630 0.00 2.37 0.00 2.34
38 39 8.091449 TGCCCAAATAAAACTAAACATGTAAGG 58.909 33.333 0.00 0.00 0.00 2.69
39 40 7.547722 GCCCAAATAAAACTAAACATGTAAGGG 59.452 37.037 0.00 0.00 0.00 3.95
40 41 8.590204 CCCAAATAAAACTAAACATGTAAGGGT 58.410 33.333 0.00 0.00 0.00 4.34
49 50 9.582648 AACTAAACATGTAAGGGTAATGAAAGT 57.417 29.630 0.00 0.00 0.00 2.66
50 51 9.582648 ACTAAACATGTAAGGGTAATGAAAGTT 57.417 29.630 0.00 0.00 0.00 2.66
53 54 7.833285 ACATGTAAGGGTAATGAAAGTTTGT 57.167 32.000 0.00 0.00 0.00 2.83
54 55 8.245195 ACATGTAAGGGTAATGAAAGTTTGTT 57.755 30.769 0.00 0.00 0.00 2.83
55 56 8.357402 ACATGTAAGGGTAATGAAAGTTTGTTC 58.643 33.333 0.00 0.00 0.00 3.18
56 57 6.961576 TGTAAGGGTAATGAAAGTTTGTTCG 58.038 36.000 0.00 0.00 0.00 3.95
57 58 6.766944 TGTAAGGGTAATGAAAGTTTGTTCGA 59.233 34.615 0.00 0.00 0.00 3.71
58 59 6.702716 AAGGGTAATGAAAGTTTGTTCGAA 57.297 33.333 0.00 0.00 0.00 3.71
59 60 6.894339 AGGGTAATGAAAGTTTGTTCGAAT 57.106 33.333 0.00 0.00 0.00 3.34
60 61 6.677913 AGGGTAATGAAAGTTTGTTCGAATG 58.322 36.000 0.00 0.00 0.00 2.67
61 62 5.344933 GGGTAATGAAAGTTTGTTCGAATGC 59.655 40.000 0.00 0.00 0.00 3.56
62 63 5.344933 GGTAATGAAAGTTTGTTCGAATGCC 59.655 40.000 0.00 0.00 0.00 4.40
63 64 2.993545 TGAAAGTTTGTTCGAATGCCG 58.006 42.857 0.00 0.00 40.25 5.69
64 65 2.614520 TGAAAGTTTGTTCGAATGCCGA 59.385 40.909 0.00 0.00 46.94 5.54
72 73 1.676968 TCGAATGCCGATATGGGGG 59.323 57.895 5.85 0.00 43.23 5.40
73 74 1.125093 TCGAATGCCGATATGGGGGT 61.125 55.000 5.85 0.00 43.23 4.95
74 75 0.250727 CGAATGCCGATATGGGGGTT 60.251 55.000 5.85 0.00 41.76 4.11
75 76 1.002659 CGAATGCCGATATGGGGGTTA 59.997 52.381 5.85 0.00 41.76 2.85
76 77 2.355716 CGAATGCCGATATGGGGGTTAT 60.356 50.000 5.85 0.00 41.76 1.89
77 78 3.697166 GAATGCCGATATGGGGGTTATT 58.303 45.455 5.85 0.00 38.63 1.40
78 79 4.624364 CGAATGCCGATATGGGGGTTATTA 60.624 45.833 5.85 0.00 41.76 0.98
79 80 5.445964 GAATGCCGATATGGGGGTTATTAT 58.554 41.667 5.85 0.00 38.63 1.28
80 81 6.584471 AATGCCGATATGGGGGTTATTATA 57.416 37.500 5.85 0.00 38.63 0.98
81 82 6.780198 ATGCCGATATGGGGGTTATTATAT 57.220 37.500 5.85 0.00 38.63 0.86
82 83 7.881912 ATGCCGATATGGGGGTTATTATATA 57.118 36.000 5.85 0.00 38.63 0.86
83 84 7.069877 TGCCGATATGGGGGTTATTATATAC 57.930 40.000 5.85 0.00 38.63 1.47
84 85 6.616137 TGCCGATATGGGGGTTATTATATACA 59.384 38.462 5.85 0.00 38.63 2.29
85 86 7.293771 TGCCGATATGGGGGTTATTATATACAT 59.706 37.037 5.85 0.00 38.63 2.29
86 87 8.818860 GCCGATATGGGGGTTATTATATACATA 58.181 37.037 5.85 0.00 38.63 2.29
112 113 9.956640 AAAAATACAGGGAATTATTTGCATTCA 57.043 25.926 0.00 0.00 32.98 2.57
113 114 8.947055 AAATACAGGGAATTATTTGCATTCAC 57.053 30.769 0.00 0.00 34.67 3.18
114 115 5.999205 ACAGGGAATTATTTGCATTCACA 57.001 34.783 2.31 0.00 36.62 3.58
115 116 5.723295 ACAGGGAATTATTTGCATTCACAC 58.277 37.500 2.31 0.00 36.62 3.82
116 117 5.245751 ACAGGGAATTATTTGCATTCACACA 59.754 36.000 2.31 0.00 36.62 3.72
117 118 6.070653 ACAGGGAATTATTTGCATTCACACAT 60.071 34.615 2.31 0.00 36.62 3.21
118 119 6.819649 CAGGGAATTATTTGCATTCACACATT 59.180 34.615 2.31 0.00 36.62 2.71
119 120 7.334921 CAGGGAATTATTTGCATTCACACATTT 59.665 33.333 2.31 0.00 36.62 2.32
120 121 7.334921 AGGGAATTATTTGCATTCACACATTTG 59.665 33.333 2.31 0.00 36.62 2.32
121 122 7.333921 GGGAATTATTTGCATTCACACATTTGA 59.666 33.333 0.00 0.00 34.61 2.69
122 123 8.719648 GGAATTATTTGCATTCACACATTTGAA 58.280 29.630 0.00 0.00 39.79 2.69
123 124 9.532697 GAATTATTTGCATTCACACATTTGAAC 57.467 29.630 0.00 0.00 38.31 3.18
124 125 8.604640 ATTATTTGCATTCACACATTTGAACA 57.395 26.923 0.00 0.00 38.31 3.18
125 126 6.922247 ATTTGCATTCACACATTTGAACAA 57.078 29.167 0.00 0.00 38.31 2.83
126 127 6.732531 TTTGCATTCACACATTTGAACAAA 57.267 29.167 2.48 2.48 38.31 2.83
127 128 5.715429 TGCATTCACACATTTGAACAAAC 57.285 34.783 2.03 0.00 38.31 2.93
128 129 5.173664 TGCATTCACACATTTGAACAAACA 58.826 33.333 2.03 0.00 38.31 2.83
129 130 5.816258 TGCATTCACACATTTGAACAAACAT 59.184 32.000 2.03 0.00 38.31 2.71
130 131 6.130723 GCATTCACACATTTGAACAAACATG 58.869 36.000 2.03 6.60 38.31 3.21
131 132 6.238157 GCATTCACACATTTGAACAAACATGT 60.238 34.615 0.00 0.00 38.31 3.21
132 133 7.042858 GCATTCACACATTTGAACAAACATGTA 60.043 33.333 0.00 5.12 38.31 2.29
133 134 8.815189 CATTCACACATTTGAACAAACATGTAA 58.185 29.630 0.00 10.70 38.31 2.41
134 135 8.939201 TTCACACATTTGAACAAACATGTAAT 57.061 26.923 0.00 0.00 32.91 1.89
135 136 8.815189 TTCACACATTTGAACAAACATGTAATG 58.185 29.630 11.81 11.81 39.40 1.90
158 159 8.988064 ATGTGCAGTATATATCTTTAGAACGG 57.012 34.615 0.00 0.00 0.00 4.44
159 160 7.375834 TGTGCAGTATATATCTTTAGAACGGG 58.624 38.462 0.00 0.00 0.00 5.28
160 161 7.231925 TGTGCAGTATATATCTTTAGAACGGGA 59.768 37.037 0.00 0.00 0.00 5.14
161 162 7.541437 GTGCAGTATATATCTTTAGAACGGGAC 59.459 40.741 0.00 0.00 0.00 4.46
162 163 7.231925 TGCAGTATATATCTTTAGAACGGGACA 59.768 37.037 0.00 0.00 0.00 4.02
163 164 7.755822 GCAGTATATATCTTTAGAACGGGACAG 59.244 40.741 0.00 0.00 0.00 3.51
164 165 8.794553 CAGTATATATCTTTAGAACGGGACAGT 58.205 37.037 0.00 0.00 0.00 3.55
167 168 8.937207 ATATATCTTTAGAACGGGACAGTAGT 57.063 34.615 0.00 0.00 0.00 2.73
282 284 4.467084 TCCGCCAATGACCTCGGC 62.467 66.667 0.00 0.00 41.49 5.54
365 372 5.572896 GCTTCATTTTTAGGTTGTTCATCGG 59.427 40.000 0.00 0.00 0.00 4.18
482 501 4.346709 TCTGTTCAAGTAAGGATGGTGTGA 59.653 41.667 0.00 0.00 0.00 3.58
559 578 1.466167 GTCTGCTCTAACGTCGGTGTA 59.534 52.381 0.00 0.00 0.00 2.90
574 593 2.185387 GGTGTAGAGCTTGGGAGGTAA 58.815 52.381 0.00 0.00 32.79 2.85
622 641 1.590238 GCATCGACGACATCTGAAAGG 59.410 52.381 0.00 0.00 0.00 3.11
662 685 0.251916 TGGTTGATGGATGACGGGTC 59.748 55.000 0.00 0.00 0.00 4.46
777 802 1.150827 GCAATGGCTTCACTTTTGGC 58.849 50.000 0.00 0.00 36.96 4.52
814 839 5.128171 AGGTCCGTAAAGTTACATATCAGCA 59.872 40.000 2.36 0.00 33.28 4.41
823 848 5.439721 AGTTACATATCAGCAATGAAGCCA 58.560 37.500 0.00 0.00 34.23 4.75
871 899 5.666462 TCCGTCATTATTTTCTTCGATGGA 58.334 37.500 0.00 0.00 36.46 3.41
888 916 3.899981 GATGCTGTGGTGGTGCCGA 62.900 63.158 0.00 0.00 41.21 5.54
952 994 3.819564 TTGTCATCTCGGTCCTTATGG 57.180 47.619 0.00 0.00 0.00 2.74
953 995 1.412710 TGTCATCTCGGTCCTTATGGC 59.587 52.381 0.00 0.00 0.00 4.40
955 1000 2.103263 GTCATCTCGGTCCTTATGGCTT 59.897 50.000 0.00 0.00 0.00 4.35
956 1001 2.103094 TCATCTCGGTCCTTATGGCTTG 59.897 50.000 0.00 0.00 0.00 4.01
961 1006 2.093658 TCGGTCCTTATGGCTTGACTTC 60.094 50.000 0.00 0.00 0.00 3.01
967 1012 4.054671 CCTTATGGCTTGACTTCGATCTC 58.945 47.826 0.00 0.00 0.00 2.75
996 1041 8.139350 TGATATAAATGGGATAGCGTATTACCG 58.861 37.037 0.00 0.00 0.00 4.02
1086 1131 2.355986 CCATCGTCCTCAACCCCGA 61.356 63.158 0.00 0.00 0.00 5.14
1113 1162 1.008309 GCGAGTCCACGAGGCTATC 60.008 63.158 0.00 0.00 35.09 2.08
1250 1310 1.482553 GGGGGACTCCTAATCCGATCA 60.483 57.143 0.00 0.00 37.08 2.92
1272 1332 1.651737 TCCCAACTCGGATTCCTCAA 58.348 50.000 0.30 0.00 36.56 3.02
1294 1354 1.821753 CAGCTCCTAATCCGGATCGAT 59.178 52.381 19.43 4.66 31.43 3.59
1305 1365 2.232696 TCCGGATCGATCAAGTCACAAA 59.767 45.455 25.93 0.00 0.00 2.83
1306 1366 2.604914 CCGGATCGATCAAGTCACAAAG 59.395 50.000 25.93 2.58 0.00 2.77
1307 1367 3.511699 CGGATCGATCAAGTCACAAAGA 58.488 45.455 25.93 0.00 0.00 2.52
1359 1423 1.608590 CCATAATAAAGCACGCCCCTG 59.391 52.381 0.00 0.00 0.00 4.45
1360 1424 2.297701 CATAATAAAGCACGCCCCTGT 58.702 47.619 0.00 0.00 0.00 4.00
1402 1470 2.027625 CGCAGGTCGTTGTTCTCCC 61.028 63.158 0.00 0.00 0.00 4.30
1419 1487 2.202676 CGCAACTCCTCCTCGAGC 60.203 66.667 6.99 0.00 32.79 5.03
1440 1519 1.299165 CATCCGACCACGACCGATC 60.299 63.158 0.00 0.00 42.66 3.69
1449 1528 3.009599 CGACCGATCGCACGTACG 61.010 66.667 15.01 15.01 42.43 3.67
1450 1529 3.310251 GACCGATCGCACGTACGC 61.310 66.667 16.72 0.00 0.00 4.42
1451 1530 4.105733 ACCGATCGCACGTACGCA 62.106 61.111 16.72 0.00 0.00 5.24
1452 1531 3.312504 CCGATCGCACGTACGCAG 61.313 66.667 16.72 9.69 0.00 5.18
1650 1745 1.874019 CAACGTCAGGATCCGCGAG 60.874 63.158 25.27 13.87 0.00 5.03
1680 1775 1.452651 CGAGCTCTACGGTACCCCA 60.453 63.158 12.85 0.00 0.00 4.96
1717 1825 9.625747 AACTTTCATTCTTCTTCTTCTTCTTCT 57.374 29.630 0.00 0.00 0.00 2.85
1718 1826 9.625747 ACTTTCATTCTTCTTCTTCTTCTTCTT 57.374 29.630 0.00 0.00 0.00 2.52
1720 1828 9.844257 TTTCATTCTTCTTCTTCTTCTTCTTCT 57.156 29.630 0.00 0.00 0.00 2.85
1721 1829 9.844257 TTCATTCTTCTTCTTCTTCTTCTTCTT 57.156 29.630 0.00 0.00 0.00 2.52
1722 1830 9.487790 TCATTCTTCTTCTTCTTCTTCTTCTTC 57.512 33.333 0.00 0.00 0.00 2.87
1723 1831 7.938563 TTCTTCTTCTTCTTCTTCTTCTTCG 57.061 36.000 0.00 0.00 0.00 3.79
1724 1832 7.278461 TCTTCTTCTTCTTCTTCTTCTTCGA 57.722 36.000 0.00 0.00 0.00 3.71
1725 1833 7.891561 TCTTCTTCTTCTTCTTCTTCTTCGAT 58.108 34.615 0.00 0.00 0.00 3.59
1726 1834 8.026607 TCTTCTTCTTCTTCTTCTTCTTCGATC 58.973 37.037 0.00 0.00 0.00 3.69
1727 1835 7.461182 TCTTCTTCTTCTTCTTCTTCGATCT 57.539 36.000 0.00 0.00 0.00 2.75
1737 1849 7.855545 TCTTCTTCTTCGATCTCTTTGTTTTG 58.144 34.615 0.00 0.00 0.00 2.44
1740 1852 7.630924 TCTTCTTCGATCTCTTTGTTTTGAAC 58.369 34.615 0.00 0.00 0.00 3.18
1762 1874 4.640201 ACTTTTAATCCGTGGTGATCCATG 59.360 41.667 0.00 0.01 46.20 3.66
1768 1880 2.853159 GTGGTGATCCATGAACGCA 58.147 52.632 0.00 0.00 46.20 5.24
1773 1885 1.132834 GTGATCCATGAACGCAATGCA 59.867 47.619 5.91 0.00 0.00 3.96
1790 1902 3.814268 AATGCAATTCCGCGCGCT 61.814 55.556 30.48 7.24 33.35 5.92
1791 1903 3.739782 AATGCAATTCCGCGCGCTC 62.740 57.895 30.48 9.15 33.35 5.03
2219 2373 6.358974 AATACTGTTTTGGGAGGGAAAATG 57.641 37.500 0.00 0.00 0.00 2.32
2234 2451 7.189079 AGGGAAAATGTGTTTGACCTTTTTA 57.811 32.000 0.00 0.00 33.87 1.52
2318 3036 4.555262 CACGGTTGCATATTTTTGGAAGT 58.445 39.130 0.00 0.00 0.00 3.01
2409 4228 6.129179 GGGATTTCCTATCATCTGAAAACCA 58.871 40.000 11.10 0.00 40.63 3.67
2415 4234 5.191522 TCCTATCATCTGAAAACCATGACCA 59.808 40.000 0.00 0.00 29.36 4.02
2426 4245 6.817641 TGAAAACCATGACCAAATTATGCATC 59.182 34.615 0.19 0.00 0.00 3.91
2438 4257 6.468956 CCAAATTATGCATCACGTTTACACTC 59.531 38.462 0.19 0.00 0.00 3.51
2445 4264 3.909776 TCACGTTTACACTCGACAGAT 57.090 42.857 0.00 0.00 0.00 2.90
2459 4278 8.041323 ACACTCGACAGATTTGGTAATTTAGAT 58.959 33.333 0.00 0.00 0.00 1.98
2460 4279 9.529325 CACTCGACAGATTTGGTAATTTAGATA 57.471 33.333 0.00 0.00 0.00 1.98
2461 4280 9.751542 ACTCGACAGATTTGGTAATTTAGATAG 57.248 33.333 0.00 0.00 0.00 2.08
2477 4296 9.632807 AATTTAGATAGTAGAAGTGATCGCATC 57.367 33.333 9.33 6.19 0.00 3.91
2602 4423 2.816087 GACATTGAGCCTGCTTTCTTCA 59.184 45.455 0.00 0.00 0.00 3.02
2663 4484 0.689745 AGATGGCCTTGTACCGCCTA 60.690 55.000 3.32 4.54 45.90 3.93
2666 4487 1.724545 TGGCCTTGTACCGCCTATAT 58.275 50.000 3.32 0.00 45.90 0.86
2781 4647 3.118454 CGTCACCACCACATCCGC 61.118 66.667 0.00 0.00 0.00 5.54
2783 4649 3.245346 TCACCACCACATCCGCCA 61.245 61.111 0.00 0.00 0.00 5.69
2784 4650 2.747460 CACCACCACATCCGCCAG 60.747 66.667 0.00 0.00 0.00 4.85
2785 4651 4.722700 ACCACCACATCCGCCAGC 62.723 66.667 0.00 0.00 0.00 4.85
2807 4673 0.250901 GAGGGACTTTCTTGCAGGCA 60.251 55.000 0.00 0.00 41.55 4.75
2844 4713 5.007430 CCACATGACTACCACTACTACTACG 59.993 48.000 0.00 0.00 0.00 3.51
2845 4714 4.574013 ACATGACTACCACTACTACTACGC 59.426 45.833 0.00 0.00 0.00 4.42
2851 4720 2.290514 ACCACTACTACTACGCCTGTGA 60.291 50.000 0.00 0.00 0.00 3.58
3036 5103 2.838693 TGGTGTCGTCGGGACCAA 60.839 61.111 12.29 0.00 45.46 3.67
3137 5207 1.675552 ACCAAGAAACCACAGAACCG 58.324 50.000 0.00 0.00 0.00 4.44
3138 5208 0.310854 CCAAGAAACCACAGAACCGC 59.689 55.000 0.00 0.00 0.00 5.68
3164 5234 3.485431 CAGCTCTTGCCAGCGTCG 61.485 66.667 0.00 0.00 44.82 5.12
3241 5314 2.558313 GTCTGCCGAGCACTTTGC 59.442 61.111 0.00 0.00 45.46 3.68
3271 5560 2.579201 CACAGACCCGCCGAAGAT 59.421 61.111 0.00 0.00 0.00 2.40
3276 5565 4.473520 ACCCGCCGAAGATGCAGG 62.474 66.667 0.00 0.00 32.38 4.85
3281 5570 4.113815 CCGAAGATGCAGGCCCCA 62.114 66.667 0.00 0.00 0.00 4.96
3282 5571 2.825836 CGAAGATGCAGGCCCCAC 60.826 66.667 0.00 0.00 0.00 4.61
3283 5572 2.440980 GAAGATGCAGGCCCCACC 60.441 66.667 0.00 0.00 39.61 4.61
3284 5573 4.431131 AAGATGCAGGCCCCACCG 62.431 66.667 0.00 0.00 46.52 4.94
3402 5742 4.856801 CTTCCCCCATGCCCGACG 62.857 72.222 0.00 0.00 0.00 5.12
3412 5752 2.061773 CATGCCCGACGACATAGATTC 58.938 52.381 0.00 0.00 0.00 2.52
3442 5782 1.609208 GCTGCAAGTTTCTCTTCCCA 58.391 50.000 0.00 0.00 35.30 4.37
3445 5785 3.152341 CTGCAAGTTTCTCTTCCCACAT 58.848 45.455 0.00 0.00 33.63 3.21
3464 5804 0.030235 TGCCCGACGACATAGATTCG 59.970 55.000 0.00 0.00 42.36 3.34
3469 5809 1.840181 GACGACATAGATTCGCAGCA 58.160 50.000 0.00 0.00 40.24 4.41
3473 5813 1.863454 GACATAGATTCGCAGCAGGTG 59.137 52.381 0.00 0.00 0.00 4.00
3493 5833 1.975327 CTGCGAGTTCCTCTTCCCA 59.025 57.895 0.00 0.00 0.00 4.37
3501 5841 1.139498 TTCCTCTTCCCACATGCCCA 61.139 55.000 0.00 0.00 0.00 5.36
3504 5844 1.303236 TCTTCCCACATGCCCAACG 60.303 57.895 0.00 0.00 0.00 4.10
3513 5853 2.545526 CACATGCCCAACGACATAGATC 59.454 50.000 0.00 0.00 0.00 2.75
3547 5887 1.627297 GCGAGTTCCTCTTCCCCCAT 61.627 60.000 0.00 0.00 0.00 4.00
3566 5906 0.387929 TGCCCGACGACATAGATTCC 59.612 55.000 0.00 0.00 0.00 3.01
3614 6005 5.278169 CCCCAAGCTCGAAGATATTGATTTG 60.278 44.000 0.00 0.00 34.92 2.32
3623 6014 5.508489 CGAAGATATTGATTTGCCCATGCTT 60.508 40.000 0.00 0.00 38.71 3.91
3664 6055 5.178252 CCATGCTCGAAGATATTGATTTCGT 59.822 40.000 5.86 0.00 42.96 3.85
3667 6058 5.810074 TGCTCGAAGATATTGATTTCGTTGA 59.190 36.000 5.86 0.00 42.96 3.18
3686 6077 3.562182 TGACTTGCTCGAGGATATACCA 58.438 45.455 15.58 2.98 42.04 3.25
3807 6225 1.002069 TGATGGCCAAGGATCAGGTT 58.998 50.000 10.96 0.00 0.00 3.50
3968 6391 4.218200 TGGTGTTTCCTCACATTTAGCATG 59.782 41.667 0.00 0.00 39.76 4.06
4196 6641 8.437274 TCTGGAATAAATTATACTCCCTCTCC 57.563 38.462 2.30 0.00 0.00 3.71
4197 6642 7.178628 TCTGGAATAAATTATACTCCCTCTCCG 59.821 40.741 2.30 0.00 0.00 4.63
4198 6643 6.785963 TGGAATAAATTATACTCCCTCTCCGT 59.214 38.462 2.30 0.00 0.00 4.69
4199 6644 7.951806 TGGAATAAATTATACTCCCTCTCCGTA 59.048 37.037 2.30 0.00 0.00 4.02
4200 6645 8.810041 GGAATAAATTATACTCCCTCTCCGTAA 58.190 37.037 0.00 0.00 0.00 3.18
4203 6648 7.909485 AAATTATACTCCCTCTCCGTAAAGA 57.091 36.000 0.00 0.00 0.00 2.52
4204 6649 7.909485 AATTATACTCCCTCTCCGTAAAGAA 57.091 36.000 0.00 0.00 0.00 2.52
4205 6650 7.909485 ATTATACTCCCTCTCCGTAAAGAAA 57.091 36.000 0.00 0.00 0.00 2.52
4206 6651 7.909485 TTATACTCCCTCTCCGTAAAGAAAT 57.091 36.000 0.00 0.00 0.00 2.17
4207 6652 9.597681 ATTATACTCCCTCTCCGTAAAGAAATA 57.402 33.333 0.00 0.00 0.00 1.40
4208 6653 9.597681 TTATACTCCCTCTCCGTAAAGAAATAT 57.402 33.333 0.00 0.00 0.00 1.28
4210 6655 7.909485 ACTCCCTCTCCGTAAAGAAATATAA 57.091 36.000 0.00 0.00 0.00 0.98
4211 6656 7.953752 ACTCCCTCTCCGTAAAGAAATATAAG 58.046 38.462 0.00 0.00 0.00 1.73
4212 6657 7.783596 ACTCCCTCTCCGTAAAGAAATATAAGA 59.216 37.037 0.00 0.00 0.00 2.10
4213 6658 8.179509 TCCCTCTCCGTAAAGAAATATAAGAG 57.820 38.462 0.00 0.00 0.00 2.85
4214 6659 6.869388 CCCTCTCCGTAAAGAAATATAAGAGC 59.131 42.308 0.00 0.00 0.00 4.09
4215 6660 6.583050 CCTCTCCGTAAAGAAATATAAGAGCG 59.417 42.308 0.00 0.00 0.00 5.03
4216 6661 7.035840 TCTCCGTAAAGAAATATAAGAGCGT 57.964 36.000 0.00 0.00 0.00 5.07
4217 6662 7.486647 TCTCCGTAAAGAAATATAAGAGCGTT 58.513 34.615 0.00 0.00 0.00 4.84
4218 6663 7.977853 TCTCCGTAAAGAAATATAAGAGCGTTT 59.022 33.333 0.00 0.00 0.00 3.60
4219 6664 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
4220 6665 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
4221 6666 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
4232 6677 6.390987 AAGAGCGTTTAGATCACTAAAACG 57.609 37.500 21.13 21.13 45.97 3.60
4237 6682 6.390987 CGTTTAGATCACTAAAACGCTCTT 57.609 37.500 16.74 0.00 45.97 2.85
4238 6683 7.502177 CGTTTAGATCACTAAAACGCTCTTA 57.498 36.000 16.74 0.00 45.97 2.10
4239 6684 8.116624 CGTTTAGATCACTAAAACGCTCTTAT 57.883 34.615 16.74 0.00 45.97 1.73
4240 6685 9.229784 CGTTTAGATCACTAAAACGCTCTTATA 57.770 33.333 16.74 0.00 45.97 0.98
4251 6696 9.845305 CTAAAACGCTCTTATATTTCTTTACGG 57.155 33.333 0.00 0.00 0.00 4.02
4252 6697 8.483307 AAAACGCTCTTATATTTCTTTACGGA 57.517 30.769 0.00 0.00 0.00 4.69
4253 6698 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4254 6699 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
4255 6700 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
4256 6701 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
4257 6702 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
4402 6847 5.163519 CCTTTGCAAAGTTATCACCATAGGG 60.164 44.000 31.67 12.96 35.72 3.53
4472 6917 9.051027 CAAAATTGACGTAATTGTATCAGACAC 57.949 33.333 0.00 0.00 38.93 3.67
4538 6985 5.634020 GTCCTCAGTGATACACAACAGTAAC 59.366 44.000 0.00 0.00 36.74 2.50
4555 7002 8.773645 CAACAGTAACAGTACATGAGAATTTCA 58.226 33.333 0.00 0.00 40.85 2.69
4770 7219 6.827727 ACCAACCCTGATACATAATAGTCAC 58.172 40.000 0.00 0.00 0.00 3.67
4966 8820 3.303526 GCTGCTTGCTTTCAAATTGTTGG 60.304 43.478 0.00 0.00 38.95 3.77
4967 8821 3.871485 TGCTTGCTTTCAAATTGTTGGT 58.129 36.364 0.00 0.00 35.29 3.67
4968 8822 3.622163 TGCTTGCTTTCAAATTGTTGGTG 59.378 39.130 0.00 0.00 35.29 4.17
4969 8823 3.546616 GCTTGCTTTCAAATTGTTGGTGC 60.547 43.478 0.00 0.00 35.29 5.01
4970 8824 2.200067 TGCTTTCAAATTGTTGGTGCG 58.800 42.857 0.00 0.00 35.29 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.483758 TGTTTAGTTTTATTTGGGCAAGGTTAA 58.516 29.630 0.00 0.00 0.00 2.01
6 7 8.019656 TGTTTAGTTTTATTTGGGCAAGGTTA 57.980 30.769 0.00 0.00 0.00 2.85
7 8 6.890293 TGTTTAGTTTTATTTGGGCAAGGTT 58.110 32.000 0.00 0.00 0.00 3.50
8 9 6.487299 TGTTTAGTTTTATTTGGGCAAGGT 57.513 33.333 0.00 0.00 0.00 3.50
9 10 6.934083 ACATGTTTAGTTTTATTTGGGCAAGG 59.066 34.615 0.00 0.00 0.00 3.61
10 11 7.961325 ACATGTTTAGTTTTATTTGGGCAAG 57.039 32.000 0.00 0.00 0.00 4.01
11 12 9.482627 CTTACATGTTTAGTTTTATTTGGGCAA 57.517 29.630 2.30 0.00 0.00 4.52
12 13 8.091449 CCTTACATGTTTAGTTTTATTTGGGCA 58.909 33.333 2.30 0.00 0.00 5.36
13 14 7.547722 CCCTTACATGTTTAGTTTTATTTGGGC 59.452 37.037 2.30 0.00 0.00 5.36
14 15 8.590204 ACCCTTACATGTTTAGTTTTATTTGGG 58.410 33.333 2.30 0.00 0.00 4.12
23 24 9.582648 ACTTTCATTACCCTTACATGTTTAGTT 57.417 29.630 2.30 0.00 0.00 2.24
24 25 9.582648 AACTTTCATTACCCTTACATGTTTAGT 57.417 29.630 2.30 0.00 0.00 2.24
27 28 8.700973 ACAAACTTTCATTACCCTTACATGTTT 58.299 29.630 2.30 0.00 0.00 2.83
28 29 8.245195 ACAAACTTTCATTACCCTTACATGTT 57.755 30.769 2.30 0.00 0.00 2.71
29 30 7.833285 ACAAACTTTCATTACCCTTACATGT 57.167 32.000 2.69 2.69 0.00 3.21
30 31 7.537306 CGAACAAACTTTCATTACCCTTACATG 59.463 37.037 0.00 0.00 0.00 3.21
31 32 7.446013 TCGAACAAACTTTCATTACCCTTACAT 59.554 33.333 0.00 0.00 0.00 2.29
32 33 6.766944 TCGAACAAACTTTCATTACCCTTACA 59.233 34.615 0.00 0.00 0.00 2.41
33 34 7.193377 TCGAACAAACTTTCATTACCCTTAC 57.807 36.000 0.00 0.00 0.00 2.34
34 35 7.804843 TTCGAACAAACTTTCATTACCCTTA 57.195 32.000 0.00 0.00 0.00 2.69
35 36 6.702716 TTCGAACAAACTTTCATTACCCTT 57.297 33.333 0.00 0.00 0.00 3.95
36 37 6.677913 CATTCGAACAAACTTTCATTACCCT 58.322 36.000 0.00 0.00 0.00 4.34
37 38 5.344933 GCATTCGAACAAACTTTCATTACCC 59.655 40.000 0.00 0.00 0.00 3.69
38 39 5.344933 GGCATTCGAACAAACTTTCATTACC 59.655 40.000 0.00 0.00 0.00 2.85
39 40 5.059221 CGGCATTCGAACAAACTTTCATTAC 59.941 40.000 0.00 0.00 42.43 1.89
40 41 5.049336 TCGGCATTCGAACAAACTTTCATTA 60.049 36.000 0.00 0.00 45.86 1.90
41 42 3.980775 CGGCATTCGAACAAACTTTCATT 59.019 39.130 0.00 0.00 42.43 2.57
42 43 3.252215 TCGGCATTCGAACAAACTTTCAT 59.748 39.130 0.00 0.00 45.86 2.57
43 44 2.614520 TCGGCATTCGAACAAACTTTCA 59.385 40.909 0.00 0.00 45.86 2.69
44 45 3.262135 TCGGCATTCGAACAAACTTTC 57.738 42.857 0.00 0.00 45.86 2.62
55 56 0.250727 AACCCCCATATCGGCATTCG 60.251 55.000 0.00 0.00 40.90 3.34
56 57 2.871096 TAACCCCCATATCGGCATTC 57.129 50.000 0.00 0.00 0.00 2.67
57 58 3.825908 AATAACCCCCATATCGGCATT 57.174 42.857 0.00 0.00 0.00 3.56
58 59 6.780198 ATATAATAACCCCCATATCGGCAT 57.220 37.500 0.00 0.00 0.00 4.40
59 60 6.616137 TGTATATAATAACCCCCATATCGGCA 59.384 38.462 0.00 0.00 0.00 5.69
60 61 7.069877 TGTATATAATAACCCCCATATCGGC 57.930 40.000 0.00 0.00 0.00 5.54
86 87 9.956640 TGAATGCAAATAATTCCCTGTATTTTT 57.043 25.926 0.00 0.00 33.85 1.94
87 88 9.382275 GTGAATGCAAATAATTCCCTGTATTTT 57.618 29.630 0.00 0.00 33.85 1.82
88 89 8.538701 TGTGAATGCAAATAATTCCCTGTATTT 58.461 29.630 0.00 0.00 33.85 1.40
89 90 7.981225 GTGTGAATGCAAATAATTCCCTGTATT 59.019 33.333 0.00 0.00 33.85 1.89
90 91 7.123997 TGTGTGAATGCAAATAATTCCCTGTAT 59.876 33.333 0.00 0.00 33.85 2.29
91 92 6.435591 TGTGTGAATGCAAATAATTCCCTGTA 59.564 34.615 0.00 0.00 33.85 2.74
92 93 5.245751 TGTGTGAATGCAAATAATTCCCTGT 59.754 36.000 0.00 0.00 33.85 4.00
93 94 5.722263 TGTGTGAATGCAAATAATTCCCTG 58.278 37.500 0.00 0.00 33.85 4.45
94 95 5.999205 TGTGTGAATGCAAATAATTCCCT 57.001 34.783 0.00 0.00 33.85 4.20
95 96 7.333921 TCAAATGTGTGAATGCAAATAATTCCC 59.666 33.333 0.00 0.00 33.85 3.97
96 97 8.254178 TCAAATGTGTGAATGCAAATAATTCC 57.746 30.769 0.00 0.00 33.85 3.01
97 98 9.532697 GTTCAAATGTGTGAATGCAAATAATTC 57.467 29.630 0.00 0.00 39.61 2.17
98 99 9.053840 TGTTCAAATGTGTGAATGCAAATAATT 57.946 25.926 0.00 0.00 39.61 1.40
99 100 8.604640 TGTTCAAATGTGTGAATGCAAATAAT 57.395 26.923 0.00 0.00 39.61 1.28
100 101 8.429493 TTGTTCAAATGTGTGAATGCAAATAA 57.571 26.923 0.00 0.00 39.61 1.40
101 102 8.333908 GTTTGTTCAAATGTGTGAATGCAAATA 58.666 29.630 0.00 0.00 39.61 1.40
102 103 6.922247 TTGTTCAAATGTGTGAATGCAAAT 57.078 29.167 0.00 0.00 39.61 2.32
103 104 6.148315 TGTTTGTTCAAATGTGTGAATGCAAA 59.852 30.769 0.00 0.00 39.61 3.68
104 105 5.640783 TGTTTGTTCAAATGTGTGAATGCAA 59.359 32.000 0.00 0.00 39.61 4.08
105 106 5.173664 TGTTTGTTCAAATGTGTGAATGCA 58.826 33.333 0.00 0.00 39.61 3.96
106 107 5.715429 TGTTTGTTCAAATGTGTGAATGC 57.285 34.783 1.33 0.00 39.61 3.56
107 108 7.236674 ACATGTTTGTTCAAATGTGTGAATG 57.763 32.000 13.45 0.00 39.61 2.67
108 109 8.939201 TTACATGTTTGTTCAAATGTGTGAAT 57.061 26.923 2.30 4.98 39.61 2.57
109 110 8.815189 CATTACATGTTTGTTCAAATGTGTGAA 58.185 29.630 2.30 13.19 37.28 3.18
110 111 7.978414 ACATTACATGTTTGTTCAAATGTGTGA 59.022 29.630 16.33 14.71 41.63 3.58
111 112 8.057156 CACATTACATGTTTGTTCAAATGTGTG 58.943 33.333 26.10 13.52 45.11 3.82
112 113 8.129161 CACATTACATGTTTGTTCAAATGTGT 57.871 30.769 26.10 16.33 45.11 3.72
114 115 6.760298 TGCACATTACATGTTTGTTCAAATGT 59.240 30.769 2.30 9.31 42.70 2.71
115 116 7.042590 ACTGCACATTACATGTTTGTTCAAATG 60.043 33.333 2.30 8.64 42.70 2.32
116 117 6.985645 ACTGCACATTACATGTTTGTTCAAAT 59.014 30.769 2.30 0.00 42.70 2.32
117 118 6.336566 ACTGCACATTACATGTTTGTTCAAA 58.663 32.000 2.30 0.00 42.70 2.69
118 119 5.900425 ACTGCACATTACATGTTTGTTCAA 58.100 33.333 2.30 0.00 42.70 2.69
119 120 5.512753 ACTGCACATTACATGTTTGTTCA 57.487 34.783 2.30 8.56 42.70 3.18
132 133 9.424319 CCGTTCTAAAGATATATACTGCACATT 57.576 33.333 0.00 0.00 0.00 2.71
133 134 8.035394 CCCGTTCTAAAGATATATACTGCACAT 58.965 37.037 0.00 0.00 0.00 3.21
134 135 7.231925 TCCCGTTCTAAAGATATATACTGCACA 59.768 37.037 0.00 0.00 0.00 4.57
135 136 7.541437 GTCCCGTTCTAAAGATATATACTGCAC 59.459 40.741 0.00 0.00 0.00 4.57
136 137 7.231925 TGTCCCGTTCTAAAGATATATACTGCA 59.768 37.037 0.00 0.00 0.00 4.41
137 138 7.600065 TGTCCCGTTCTAAAGATATATACTGC 58.400 38.462 0.00 0.00 0.00 4.40
138 139 8.794553 ACTGTCCCGTTCTAAAGATATATACTG 58.205 37.037 0.00 0.00 0.00 2.74
139 140 8.937207 ACTGTCCCGTTCTAAAGATATATACT 57.063 34.615 0.00 0.00 0.00 2.12
142 143 8.937207 ACTACTGTCCCGTTCTAAAGATATAT 57.063 34.615 0.00 0.00 0.00 0.86
144 145 8.937207 ATACTACTGTCCCGTTCTAAAGATAT 57.063 34.615 0.00 0.00 0.00 1.63
145 146 7.172190 CGATACTACTGTCCCGTTCTAAAGATA 59.828 40.741 0.00 0.00 0.00 1.98
146 147 6.017275 CGATACTACTGTCCCGTTCTAAAGAT 60.017 42.308 0.00 0.00 0.00 2.40
147 148 5.295292 CGATACTACTGTCCCGTTCTAAAGA 59.705 44.000 0.00 0.00 0.00 2.52
148 149 5.505324 CCGATACTACTGTCCCGTTCTAAAG 60.505 48.000 0.00 0.00 0.00 1.85
149 150 4.336433 CCGATACTACTGTCCCGTTCTAAA 59.664 45.833 0.00 0.00 0.00 1.85
150 151 3.879295 CCGATACTACTGTCCCGTTCTAA 59.121 47.826 0.00 0.00 0.00 2.10
151 152 3.470709 CCGATACTACTGTCCCGTTCTA 58.529 50.000 0.00 0.00 0.00 2.10
152 153 2.295885 CCGATACTACTGTCCCGTTCT 58.704 52.381 0.00 0.00 0.00 3.01
153 154 1.336125 CCCGATACTACTGTCCCGTTC 59.664 57.143 0.00 0.00 0.00 3.95
154 155 1.341383 ACCCGATACTACTGTCCCGTT 60.341 52.381 0.00 0.00 0.00 4.44
155 156 0.257039 ACCCGATACTACTGTCCCGT 59.743 55.000 0.00 0.00 0.00 5.28
156 157 0.950116 GACCCGATACTACTGTCCCG 59.050 60.000 0.00 0.00 0.00 5.14
157 158 0.950116 CGACCCGATACTACTGTCCC 59.050 60.000 0.00 0.00 0.00 4.46
158 159 1.673168 ACGACCCGATACTACTGTCC 58.327 55.000 0.00 0.00 0.00 4.02
159 160 2.941720 AGAACGACCCGATACTACTGTC 59.058 50.000 0.00 0.00 0.00 3.51
160 161 2.996631 AGAACGACCCGATACTACTGT 58.003 47.619 0.00 0.00 0.00 3.55
161 162 4.096081 AGAAAGAACGACCCGATACTACTG 59.904 45.833 0.00 0.00 0.00 2.74
162 163 4.268359 AGAAAGAACGACCCGATACTACT 58.732 43.478 0.00 0.00 0.00 2.57
163 164 4.629251 AGAAAGAACGACCCGATACTAC 57.371 45.455 0.00 0.00 0.00 2.73
164 165 4.096984 GGAAGAAAGAACGACCCGATACTA 59.903 45.833 0.00 0.00 0.00 1.82
165 166 3.119209 GGAAGAAAGAACGACCCGATACT 60.119 47.826 0.00 0.00 0.00 2.12
166 167 3.119209 AGGAAGAAAGAACGACCCGATAC 60.119 47.826 0.00 0.00 0.00 2.24
167 168 3.094572 AGGAAGAAAGAACGACCCGATA 58.905 45.455 0.00 0.00 0.00 2.92
257 259 3.801997 CATTGGCGGAGGGGAGCT 61.802 66.667 0.00 0.00 0.00 4.09
282 284 2.737180 CCCCCTCATCATCGACGG 59.263 66.667 0.00 0.00 0.00 4.79
365 372 3.793144 CCGCTGCCGAAGTCAAGC 61.793 66.667 0.00 0.00 36.29 4.01
445 464 5.245075 ACTTGAACAGACTGGTTTCCAAAAA 59.755 36.000 7.51 0.00 30.80 1.94
547 566 1.200716 CCAAGCTCTACACCGACGTTA 59.799 52.381 0.00 0.00 0.00 3.18
559 578 2.122768 CTGGATTACCTCCCAAGCTCT 58.877 52.381 0.00 0.00 44.23 4.09
622 641 1.398451 CGAACTCAACACATGTTCCGC 60.398 52.381 0.00 0.00 37.40 5.54
734 758 1.202256 TGAACGAATCAGATCGGGACG 60.202 52.381 1.59 0.00 46.82 4.79
736 760 2.734175 CGTTGAACGAATCAGATCGGGA 60.734 50.000 13.13 0.00 46.05 5.14
802 827 4.273235 CGTGGCTTCATTGCTGATATGTAA 59.727 41.667 0.00 0.00 0.00 2.41
814 839 0.320771 AAGCTCGACGTGGCTTCATT 60.321 50.000 19.12 4.21 44.18 2.57
823 848 0.965866 TCCTCATCCAAGCTCGACGT 60.966 55.000 0.00 0.00 0.00 4.34
857 882 3.379372 CCACAGCATCCATCGAAGAAAAT 59.621 43.478 0.00 0.00 43.58 1.82
871 899 3.490031 TTCGGCACCACCACAGCAT 62.490 57.895 0.00 0.00 39.03 3.79
888 916 0.606401 CAACATCCGTCACCTGCCTT 60.606 55.000 0.00 0.00 0.00 4.35
939 981 1.482593 AGTCAAGCCATAAGGACCGAG 59.517 52.381 0.00 0.00 36.89 4.63
952 994 9.847706 TTTATATCATAGAGATCGAAGTCAAGC 57.152 33.333 0.00 0.00 38.19 4.01
956 1001 9.743057 CCCATTTATATCATAGAGATCGAAGTC 57.257 37.037 0.00 0.00 38.19 3.01
961 1006 9.853555 GCTATCCCATTTATATCATAGAGATCG 57.146 37.037 0.00 0.00 38.19 3.69
1033 1078 4.590222 AGGCATTCATTCTTGTGTTCCTTT 59.410 37.500 0.00 0.00 0.00 3.11
1128 1177 1.515088 CACGAGCGCTACTCCACTG 60.515 63.158 11.50 0.00 43.01 3.66
1150 1199 1.225426 CTCCTGCTGCATTGGCCTA 59.775 57.895 3.32 0.00 40.13 3.93
1154 1203 1.807886 GCTTCTCCTGCTGCATTGG 59.192 57.895 1.31 1.52 0.00 3.16
1250 1310 2.576191 TGAGGAATCCGAGTTGGGAAAT 59.424 45.455 0.00 0.00 40.09 2.17
1272 1332 1.821753 CGATCCGGATTAGGAGCTGAT 59.178 52.381 20.22 0.00 44.03 2.90
1294 1354 3.981416 CGAGTCGAATCTTTGTGACTTGA 59.019 43.478 6.73 0.00 42.80 3.02
1305 1365 1.537638 CATCCGATCCGAGTCGAATCT 59.462 52.381 15.64 0.00 44.06 2.40
1306 1366 1.970447 CATCCGATCCGAGTCGAATC 58.030 55.000 15.64 8.12 44.06 2.52
1307 1367 0.039074 GCATCCGATCCGAGTCGAAT 60.039 55.000 15.64 0.00 44.06 3.34
1402 1470 2.202676 GCTCGAGGAGGAGTTGCG 60.203 66.667 15.58 0.00 36.41 4.85
1419 1487 2.494918 GGTCGTGGTCGGATGGAG 59.505 66.667 0.00 0.00 37.69 3.86
1717 1825 7.553881 AGTTCAAAACAAAGAGATCGAAGAA 57.446 32.000 0.00 0.00 43.58 2.52
1718 1826 7.553881 AAGTTCAAAACAAAGAGATCGAAGA 57.446 32.000 0.00 0.00 45.75 2.87
1719 1827 8.620533 AAAAGTTCAAAACAAAGAGATCGAAG 57.379 30.769 0.00 0.00 0.00 3.79
1724 1832 9.463443 CGGATTAAAAGTTCAAAACAAAGAGAT 57.537 29.630 0.00 0.00 0.00 2.75
1725 1833 8.463607 ACGGATTAAAAGTTCAAAACAAAGAGA 58.536 29.630 0.00 0.00 0.00 3.10
1726 1834 8.531530 CACGGATTAAAAGTTCAAAACAAAGAG 58.468 33.333 0.00 0.00 0.00 2.85
1727 1835 7.489757 CCACGGATTAAAAGTTCAAAACAAAGA 59.510 33.333 0.00 0.00 0.00 2.52
1737 1849 4.698304 TGGATCACCACGGATTAAAAGTTC 59.302 41.667 0.00 0.00 41.77 3.01
1762 1874 2.222863 GGAATTGCATTGCATTGCGTTC 60.223 45.455 26.62 26.62 45.77 3.95
1763 1875 1.733360 GGAATTGCATTGCATTGCGTT 59.267 42.857 24.10 20.89 45.77 4.84
1764 1876 1.361793 GGAATTGCATTGCATTGCGT 58.638 45.000 24.10 14.93 45.77 5.24
1765 1877 0.299300 CGGAATTGCATTGCATTGCG 59.701 50.000 24.10 22.26 45.77 4.85
1766 1878 0.027063 GCGGAATTGCATTGCATTGC 59.973 50.000 23.33 23.33 38.76 3.56
1767 1879 0.299300 CGCGGAATTGCATTGCATTG 59.701 50.000 12.95 4.20 38.76 2.82
1768 1880 1.422950 GCGCGGAATTGCATTGCATT 61.423 50.000 12.95 6.17 38.76 3.56
1773 1885 3.739782 GAGCGCGCGGAATTGCATT 62.740 57.895 33.06 3.04 34.15 3.56
1790 1902 2.360801 TCGTACCATGATTCATGAGCGA 59.639 45.455 24.93 23.82 43.81 4.93
1791 1903 2.742774 TCGTACCATGATTCATGAGCG 58.257 47.619 24.93 22.38 43.81 5.03
2113 2238 0.178975 ACAAAGGGGTTGGCGATGAA 60.179 50.000 0.00 0.00 41.97 2.57
2198 2352 4.586841 CACATTTTCCCTCCCAAAACAGTA 59.413 41.667 0.00 0.00 0.00 2.74
2200 2354 3.387699 ACACATTTTCCCTCCCAAAACAG 59.612 43.478 0.00 0.00 0.00 3.16
2267 2776 9.477484 AGATGTGTTAATTTAGCTAATACGGAG 57.523 33.333 7.08 0.00 0.00 4.63
2268 2777 9.256477 CAGATGTGTTAATTTAGCTAATACGGA 57.744 33.333 7.08 0.00 0.00 4.69
2269 2778 8.009974 GCAGATGTGTTAATTTAGCTAATACGG 58.990 37.037 7.08 0.00 0.00 4.02
2270 2779 8.009974 GGCAGATGTGTTAATTTAGCTAATACG 58.990 37.037 7.08 0.00 0.00 3.06
2318 3036 1.754803 CCTATACGCAGTCACCCTTCA 59.245 52.381 0.00 0.00 43.93 3.02
2361 3079 8.762645 CCCAACAGCAGATAGATATATCCTTTA 58.237 37.037 9.18 0.00 0.00 1.85
2362 3080 7.459125 TCCCAACAGCAGATAGATATATCCTTT 59.541 37.037 9.18 0.00 0.00 3.11
2363 3081 6.962311 TCCCAACAGCAGATAGATATATCCTT 59.038 38.462 9.18 0.00 0.00 3.36
2364 3082 6.506661 TCCCAACAGCAGATAGATATATCCT 58.493 40.000 9.18 0.00 0.00 3.24
2365 3083 6.798427 TCCCAACAGCAGATAGATATATCC 57.202 41.667 9.18 0.00 0.00 2.59
2368 4161 7.459125 AGGAAATCCCAACAGCAGATAGATATA 59.541 37.037 0.00 0.00 37.41 0.86
2409 4228 5.581126 AACGTGATGCATAATTTGGTCAT 57.419 34.783 0.00 0.00 0.00 3.06
2415 4234 6.091577 TCGAGTGTAAACGTGATGCATAATTT 59.908 34.615 0.00 0.72 0.00 1.82
2426 4245 4.376008 CCAAATCTGTCGAGTGTAAACGTG 60.376 45.833 0.00 0.00 0.00 4.49
2460 4279 9.250624 GTTAATTAAGATGCGATCACTTCTACT 57.749 33.333 0.00 0.00 0.00 2.57
2461 4280 9.031360 TGTTAATTAAGATGCGATCACTTCTAC 57.969 33.333 0.00 0.00 0.00 2.59
2512 4331 8.512138 GCCAAACTAAATGTGTACAAGAAGTAT 58.488 33.333 0.00 0.00 34.67 2.12
2517 4336 5.133941 TGGCCAAACTAAATGTGTACAAGA 58.866 37.500 0.61 0.00 0.00 3.02
2518 4337 5.446143 TGGCCAAACTAAATGTGTACAAG 57.554 39.130 0.61 0.00 0.00 3.16
2583 4404 2.818432 ACTGAAGAAAGCAGGCTCAATG 59.182 45.455 0.00 0.00 37.69 2.82
2602 4423 1.403780 GGGCGTGACGAGATAACAACT 60.404 52.381 10.10 0.00 0.00 3.16
2663 4484 4.787551 TGGCGGGTTTGTTCATCTTATAT 58.212 39.130 0.00 0.00 0.00 0.86
2666 4487 2.554893 GTTGGCGGGTTTGTTCATCTTA 59.445 45.455 0.00 0.00 0.00 2.10
2781 4647 1.842381 AAGAAAGTCCCTCCGGCTGG 61.842 60.000 4.71 4.71 0.00 4.85
2783 4649 1.679898 CAAGAAAGTCCCTCCGGCT 59.320 57.895 0.00 0.00 0.00 5.52
2784 4650 2.041115 GCAAGAAAGTCCCTCCGGC 61.041 63.158 0.00 0.00 0.00 6.13
2785 4651 0.674895 CTGCAAGAAAGTCCCTCCGG 60.675 60.000 0.00 0.00 34.07 5.14
2786 4652 0.674895 CCTGCAAGAAAGTCCCTCCG 60.675 60.000 0.00 0.00 34.07 4.63
2787 4653 0.962855 GCCTGCAAGAAAGTCCCTCC 60.963 60.000 0.00 0.00 34.07 4.30
2788 4654 0.250901 TGCCTGCAAGAAAGTCCCTC 60.251 55.000 0.00 0.00 34.07 4.30
2789 4655 0.538287 GTGCCTGCAAGAAAGTCCCT 60.538 55.000 0.00 0.00 34.07 4.20
2790 4656 0.823356 TGTGCCTGCAAGAAAGTCCC 60.823 55.000 0.00 0.00 34.07 4.46
2791 4657 0.595095 CTGTGCCTGCAAGAAAGTCC 59.405 55.000 0.00 0.00 34.07 3.85
2792 4658 0.595095 CCTGTGCCTGCAAGAAAGTC 59.405 55.000 0.00 0.00 34.07 3.01
2793 4659 1.458639 GCCTGTGCCTGCAAGAAAGT 61.459 55.000 0.00 0.00 34.07 2.66
2794 4660 1.288127 GCCTGTGCCTGCAAGAAAG 59.712 57.895 0.00 0.00 34.07 2.62
2795 4661 3.447040 GCCTGTGCCTGCAAGAAA 58.553 55.556 0.00 0.00 34.07 2.52
2844 4713 4.783621 TGGCTCGGCATCACAGGC 62.784 66.667 0.00 0.00 0.00 4.85
2845 4714 2.513204 CTGGCTCGGCATCACAGG 60.513 66.667 0.00 0.00 0.00 4.00
3010 5077 2.203451 ACGACACCAGAGACGGGT 60.203 61.111 0.00 0.00 39.88 5.28
3138 5208 1.786582 GCAAGAGCTGCGTCTTCAG 59.213 57.895 10.16 4.17 42.37 3.02
3164 5234 1.019805 GGTAGACAAAGTGCTCGGCC 61.020 60.000 0.00 0.00 0.00 6.13
3241 5314 1.003233 GGTCTGTGGTTTCCTGGTAGG 59.997 57.143 0.00 0.00 36.46 3.18
3402 5742 1.863454 CACCTGCTGCGAATCTATGTC 59.137 52.381 0.00 0.00 0.00 3.06
3428 5768 2.519013 GGCATGTGGGAAGAGAAACTT 58.481 47.619 0.00 0.00 42.03 2.66
3433 5773 1.612146 TCGGGCATGTGGGAAGAGA 60.612 57.895 0.00 0.00 0.00 3.10
3442 5782 1.040646 ATCTATGTCGTCGGGCATGT 58.959 50.000 11.59 0.00 0.00 3.21
3445 5785 0.030235 CGAATCTATGTCGTCGGGCA 59.970 55.000 0.00 0.00 33.80 5.36
3469 5809 2.925170 AGGAACTCGCAGCCACCT 60.925 61.111 0.00 0.00 0.00 4.00
3483 5823 1.139498 TTGGGCATGTGGGAAGAGGA 61.139 55.000 0.00 0.00 0.00 3.71
3493 5833 2.485479 GGATCTATGTCGTTGGGCATGT 60.485 50.000 0.00 0.00 0.00 3.21
3501 5841 0.459899 TGCTGCGGATCTATGTCGTT 59.540 50.000 0.00 0.00 0.00 3.85
3504 5844 0.390860 ACCTGCTGCGGATCTATGTC 59.609 55.000 10.70 0.00 0.00 3.06
3547 5887 0.387929 GGAATCTATGTCGTCGGGCA 59.612 55.000 0.00 0.00 0.00 5.36
3614 6005 0.379669 CGACATCTTCAAGCATGGGC 59.620 55.000 0.00 0.00 41.61 5.36
3664 6055 3.958147 TGGTATATCCTCGAGCAAGTCAA 59.042 43.478 6.99 0.00 37.07 3.18
3667 6058 3.243434 CGTTGGTATATCCTCGAGCAAGT 60.243 47.826 6.99 0.00 36.80 3.16
3807 6225 9.996554 TTTGTTTTGAGATATCTGTTACTCTGA 57.003 29.630 10.74 0.00 0.00 3.27
3883 6301 5.932883 GCTTCTTACTGGTTACTGCTAACTT 59.067 40.000 0.00 0.00 33.83 2.66
3893 6314 7.108841 ACTATCGATTGCTTCTTACTGGTTA 57.891 36.000 1.71 0.00 0.00 2.85
3900 6321 8.910944 AGTTAAGGTACTATCGATTGCTTCTTA 58.089 33.333 1.71 7.59 38.49 2.10
4015 6442 0.461548 TTCTCAGGCCGAGCAGTATG 59.538 55.000 16.74 0.00 41.98 2.39
4025 6452 3.500558 GAAGAAATTGCTTCTCAGGCC 57.499 47.619 17.71 0.00 44.00 5.19
4184 6629 9.597681 TTATATTTCTTTACGGAGAGGGAGTAT 57.402 33.333 0.00 0.00 0.00 2.12
4185 6630 9.075678 CTTATATTTCTTTACGGAGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
4186 6631 7.783596 TCTTATATTTCTTTACGGAGAGGGAGT 59.216 37.037 0.00 0.00 0.00 3.85
4187 6632 8.179509 TCTTATATTTCTTTACGGAGAGGGAG 57.820 38.462 0.00 0.00 0.00 4.30
4188 6633 7.255871 GCTCTTATATTTCTTTACGGAGAGGGA 60.256 40.741 0.00 0.00 31.25 4.20
4189 6634 6.869388 GCTCTTATATTTCTTTACGGAGAGGG 59.131 42.308 0.00 0.00 31.25 4.30
4190 6635 6.583050 CGCTCTTATATTTCTTTACGGAGAGG 59.417 42.308 0.00 0.00 31.25 3.69
4191 6636 7.140048 ACGCTCTTATATTTCTTTACGGAGAG 58.860 38.462 0.00 0.00 33.16 3.20
4192 6637 7.035840 ACGCTCTTATATTTCTTTACGGAGA 57.964 36.000 0.00 0.00 0.00 3.71
4193 6638 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4194 6639 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
4195 6640 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
4206 6651 9.229784 CGTTTTAGTGATCTAAACGCTCTTATA 57.770 33.333 16.48 0.00 43.20 0.98
4207 6652 7.254017 GCGTTTTAGTGATCTAAACGCTCTTAT 60.254 37.037 30.30 0.52 46.70 1.73
4208 6653 6.034256 GCGTTTTAGTGATCTAAACGCTCTTA 59.966 38.462 30.30 2.87 46.70 2.10
4209 6654 5.163982 GCGTTTTAGTGATCTAAACGCTCTT 60.164 40.000 30.30 1.57 46.70 2.85
4210 6655 4.326548 GCGTTTTAGTGATCTAAACGCTCT 59.673 41.667 30.30 9.60 46.70 4.09
4211 6656 4.566177 GCGTTTTAGTGATCTAAACGCTC 58.434 43.478 30.30 16.83 46.70 5.03
4212 6657 4.579270 GCGTTTTAGTGATCTAAACGCT 57.421 40.909 30.30 10.16 46.70 5.07
4214 6659 6.390987 AAGAGCGTTTTAGTGATCTAAACG 57.609 37.500 20.70 20.70 43.20 3.60
4225 6670 9.845305 CCGTAAAGAAATATAAGAGCGTTTTAG 57.155 33.333 0.00 0.00 0.00 1.85
4226 6671 9.585099 TCCGTAAAGAAATATAAGAGCGTTTTA 57.415 29.630 0.00 0.00 0.00 1.52
4227 6672 8.483307 TCCGTAAAGAAATATAAGAGCGTTTT 57.517 30.769 0.00 0.00 0.00 2.43
4228 6673 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
4229 6674 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4230 6675 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4231 6676 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4232 6677 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4233 6678 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4234 6679 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4238 6683 9.993454 GTAATTACTCCCTCCGTAAAGAAATAT 57.007 33.333 8.41 0.00 31.36 1.28
4239 6684 8.980596 TGTAATTACTCCCTCCGTAAAGAAATA 58.019 33.333 16.33 0.00 31.36 1.40
4240 6685 7.854337 TGTAATTACTCCCTCCGTAAAGAAAT 58.146 34.615 16.33 0.00 31.36 2.17
4241 6686 7.243604 TGTAATTACTCCCTCCGTAAAGAAA 57.756 36.000 16.33 0.00 31.36 2.52
4242 6687 6.855763 TGTAATTACTCCCTCCGTAAAGAA 57.144 37.500 16.33 0.00 31.36 2.52
4243 6688 8.537728 TTATGTAATTACTCCCTCCGTAAAGA 57.462 34.615 16.33 0.00 31.36 2.52
4244 6689 9.774413 AATTATGTAATTACTCCCTCCGTAAAG 57.226 33.333 16.33 0.00 34.36 1.85
4246 6691 9.768662 GAAATTATGTAATTACTCCCTCCGTAA 57.231 33.333 16.33 1.51 35.00 3.18
4247 6692 9.151177 AGAAATTATGTAATTACTCCCTCCGTA 57.849 33.333 16.33 0.00 35.00 4.02
4248 6693 8.030913 AGAAATTATGTAATTACTCCCTCCGT 57.969 34.615 16.33 0.00 35.00 4.69
4249 6694 9.640963 CTAGAAATTATGTAATTACTCCCTCCG 57.359 37.037 16.33 0.00 35.00 4.63
4283 6728 4.038763 AGCCCTTGTTTATCATGATGCATG 59.961 41.667 18.72 14.36 42.60 4.06
4284 6729 4.038763 CAGCCCTTGTTTATCATGATGCAT 59.961 41.667 18.72 0.00 0.00 3.96
4285 6730 3.382227 CAGCCCTTGTTTATCATGATGCA 59.618 43.478 18.72 11.21 0.00 3.96
4286 6731 3.633525 TCAGCCCTTGTTTATCATGATGC 59.366 43.478 18.72 10.08 0.00 3.91
4287 6732 6.401047 AATCAGCCCTTGTTTATCATGATG 57.599 37.500 18.72 0.00 0.00 3.07
4288 6733 7.270047 CAAAATCAGCCCTTGTTTATCATGAT 58.730 34.615 13.81 13.81 0.00 2.45
4289 6734 6.632909 CAAAATCAGCCCTTGTTTATCATGA 58.367 36.000 0.00 0.00 0.00 3.07
4298 6743 1.891150 CAGAGCAAAATCAGCCCTTGT 59.109 47.619 0.00 0.00 0.00 3.16
4299 6744 2.094854 GTCAGAGCAAAATCAGCCCTTG 60.095 50.000 0.00 0.00 0.00 3.61
4402 6847 1.327303 TCTGCCATTGTTGACAACCC 58.673 50.000 15.59 0.44 38.86 4.11
4472 6917 8.515473 TTCGATCCAATAGTATCGTAAATGTG 57.485 34.615 0.00 0.00 44.11 3.21
4538 6985 5.256474 ACCCCTTGAAATTCTCATGTACTG 58.744 41.667 0.00 0.00 32.78 2.74
4555 7002 3.028130 TCTTTGCTTTTCGAAACCCCTT 58.972 40.909 10.79 0.00 0.00 3.95
4770 7219 7.746034 CCATTTGCTTACATACGCATATACAAG 59.254 37.037 0.00 0.00 35.85 3.16
4966 8820 1.083489 TAAGCAGTATTGGCACGCAC 58.917 50.000 0.00 0.00 0.00 5.34
4967 8821 1.466950 GTTAAGCAGTATTGGCACGCA 59.533 47.619 0.00 0.00 0.00 5.24
4968 8822 1.202143 GGTTAAGCAGTATTGGCACGC 60.202 52.381 0.00 0.00 0.00 5.34
4969 8823 2.080693 TGGTTAAGCAGTATTGGCACG 58.919 47.619 2.54 0.00 0.00 5.34
4970 8824 4.513198 TTTGGTTAAGCAGTATTGGCAC 57.487 40.909 7.51 0.00 0.00 5.01
5001 8855 2.092212 CCTATGGCCCATCAGTTGTTCT 60.092 50.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.