Multiple sequence alignment - TraesCS7D01G347700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G347700 | chr7D | 100.000 | 7172 | 0 | 0 | 1 | 7172 | 447061673 | 447054502 | 0.000000e+00 | 13245.0 |
1 | TraesCS7D01G347700 | chr7D | 96.281 | 242 | 6 | 1 | 3444 | 3682 | 31061841 | 31062082 | 1.880000e-105 | 394.0 |
2 | TraesCS7D01G347700 | chr7D | 81.437 | 167 | 24 | 4 | 341 | 507 | 509615423 | 509615264 | 5.840000e-26 | 130.0 |
3 | TraesCS7D01G347700 | chr7B | 95.983 | 2290 | 67 | 12 | 1127 | 3409 | 464546940 | 464544669 | 0.000000e+00 | 3696.0 |
4 | TraesCS7D01G347700 | chr7B | 94.734 | 1576 | 49 | 10 | 4776 | 6347 | 464543475 | 464541930 | 0.000000e+00 | 2420.0 |
5 | TraesCS7D01G347700 | chr7B | 95.081 | 1118 | 39 | 12 | 3681 | 4788 | 464544604 | 464543493 | 0.000000e+00 | 1746.0 |
6 | TraesCS7D01G347700 | chr7B | 96.369 | 661 | 19 | 2 | 476 | 1132 | 464547757 | 464547098 | 0.000000e+00 | 1083.0 |
7 | TraesCS7D01G347700 | chr7B | 93.983 | 698 | 33 | 6 | 6478 | 7172 | 464541494 | 464540803 | 0.000000e+00 | 1048.0 |
8 | TraesCS7D01G347700 | chr7B | 93.004 | 486 | 27 | 4 | 1 | 485 | 464548339 | 464547860 | 0.000000e+00 | 702.0 |
9 | TraesCS7D01G347700 | chr7B | 93.933 | 445 | 23 | 3 | 6386 | 6830 | 464541930 | 464541490 | 0.000000e+00 | 669.0 |
10 | TraesCS7D01G347700 | chr7A | 95.130 | 2033 | 68 | 6 | 590 | 2607 | 498593374 | 498591358 | 0.000000e+00 | 3177.0 |
11 | TraesCS7D01G347700 | chr7A | 90.373 | 1475 | 129 | 11 | 5705 | 7172 | 498586974 | 498585506 | 0.000000e+00 | 1925.0 |
12 | TraesCS7D01G347700 | chr7A | 88.986 | 1480 | 115 | 18 | 3718 | 5164 | 498590158 | 498588694 | 0.000000e+00 | 1786.0 |
13 | TraesCS7D01G347700 | chr7A | 84.882 | 807 | 63 | 24 | 2608 | 3377 | 498591193 | 498590409 | 0.000000e+00 | 760.0 |
14 | TraesCS7D01G347700 | chr7A | 91.636 | 550 | 24 | 9 | 5164 | 5706 | 498588605 | 498588071 | 0.000000e+00 | 741.0 |
15 | TraesCS7D01G347700 | chr7A | 88.117 | 446 | 29 | 13 | 17 | 441 | 498593979 | 498593537 | 6.420000e-140 | 508.0 |
16 | TraesCS7D01G347700 | chr7A | 95.885 | 243 | 7 | 1 | 3444 | 3683 | 631367660 | 631367418 | 2.430000e-104 | 390.0 |
17 | TraesCS7D01G347700 | chr7A | 90.789 | 152 | 8 | 3 | 484 | 631 | 498593528 | 498593379 | 1.580000e-46 | 198.0 |
18 | TraesCS7D01G347700 | chr6B | 97.107 | 242 | 4 | 1 | 3444 | 3682 | 523343878 | 523343637 | 8.660000e-109 | 405.0 |
19 | TraesCS7D01G347700 | chr6B | 96.281 | 242 | 6 | 1 | 3444 | 3682 | 98854292 | 98854533 | 1.880000e-105 | 394.0 |
20 | TraesCS7D01G347700 | chr2A | 96.708 | 243 | 4 | 2 | 3444 | 3682 | 362445894 | 362446136 | 1.120000e-107 | 401.0 |
21 | TraesCS7D01G347700 | chr3B | 96.639 | 238 | 8 | 0 | 3445 | 3682 | 423813276 | 423813513 | 5.210000e-106 | 396.0 |
22 | TraesCS7D01G347700 | chr3B | 81.013 | 158 | 22 | 2 | 341 | 498 | 679632670 | 679632819 | 1.260000e-22 | 119.0 |
23 | TraesCS7D01G347700 | chr1D | 95.455 | 242 | 8 | 1 | 3444 | 3682 | 27881890 | 27881649 | 4.060000e-102 | 383.0 |
24 | TraesCS7D01G347700 | chr1D | 76.687 | 163 | 29 | 5 | 341 | 503 | 97556315 | 97556468 | 1.660000e-11 | 82.4 |
25 | TraesCS7D01G347700 | chr1B | 95.455 | 242 | 8 | 1 | 3444 | 3682 | 166580536 | 166580295 | 4.060000e-102 | 383.0 |
26 | TraesCS7D01G347700 | chr1B | 80.226 | 177 | 18 | 11 | 336 | 504 | 169532986 | 169533153 | 4.550000e-22 | 117.0 |
27 | TraesCS7D01G347700 | chr5D | 94.422 | 251 | 9 | 4 | 3444 | 3690 | 33663584 | 33663335 | 1.460000e-101 | 381.0 |
28 | TraesCS7D01G347700 | chr6D | 82.955 | 176 | 17 | 6 | 338 | 511 | 388119359 | 388119195 | 5.800000e-31 | 147.0 |
29 | TraesCS7D01G347700 | chr6D | 96.970 | 33 | 0 | 1 | 5170 | 5202 | 400715623 | 400715592 | 4.000000e-03 | 54.7 |
30 | TraesCS7D01G347700 | chr6A | 85.106 | 141 | 14 | 1 | 360 | 500 | 517525539 | 517525406 | 3.490000e-28 | 137.0 |
31 | TraesCS7D01G347700 | chr2D | 82.609 | 161 | 20 | 4 | 341 | 501 | 443243841 | 443243993 | 1.250000e-27 | 135.0 |
32 | TraesCS7D01G347700 | chr4A | 84.000 | 125 | 20 | 0 | 341 | 465 | 715319457 | 715319333 | 3.510000e-23 | 121.0 |
33 | TraesCS7D01G347700 | chr4A | 83.784 | 111 | 18 | 0 | 347 | 457 | 601184827 | 601184937 | 9.840000e-19 | 106.0 |
34 | TraesCS7D01G347700 | chr4B | 81.410 | 156 | 14 | 9 | 342 | 496 | 454037974 | 454038115 | 5.880000e-21 | 113.0 |
35 | TraesCS7D01G347700 | chr4B | 84.034 | 119 | 18 | 1 | 340 | 457 | 536122966 | 536122848 | 5.880000e-21 | 113.0 |
36 | TraesCS7D01G347700 | chr3A | 80.247 | 162 | 20 | 5 | 341 | 500 | 651517255 | 651517406 | 2.110000e-20 | 111.0 |
37 | TraesCS7D01G347700 | chr1A | 97.368 | 38 | 1 | 0 | 464 | 501 | 394589796 | 394589833 | 1.670000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G347700 | chr7D | 447054502 | 447061673 | 7171 | True | 13245.000000 | 13245 | 100.000000 | 1 | 7172 | 1 | chr7D.!!$R1 | 7171 |
1 | TraesCS7D01G347700 | chr7B | 464540803 | 464548339 | 7536 | True | 1623.428571 | 3696 | 94.726714 | 1 | 7172 | 7 | chr7B.!!$R1 | 7171 |
2 | TraesCS7D01G347700 | chr7A | 498585506 | 498593979 | 8473 | True | 1299.285714 | 3177 | 89.987571 | 17 | 7172 | 7 | chr7A.!!$R2 | 7155 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
156 | 177 | 0.238553 | GCTCCACCTTCGTTGCTTTC | 59.761 | 55.000 | 0.00 | 0.0 | 0.00 | 2.62 | F |
1029 | 1223 | 1.005630 | GGTCGCTGTTGCTCTCACT | 60.006 | 57.895 | 0.00 | 0.0 | 36.97 | 3.41 | F |
2668 | 3190 | 1.686355 | TTTCAACAACATGAGCCCGT | 58.314 | 45.000 | 0.00 | 0.0 | 0.00 | 5.28 | F |
3500 | 4216 | 0.310854 | CCCGTGCTTCAACTTTGACC | 59.689 | 55.000 | 0.00 | 0.0 | 36.83 | 4.02 | F |
3617 | 4333 | 0.038892 | GCAGTCGGTCTCGTTGGTTA | 60.039 | 55.000 | 0.00 | 0.0 | 37.69 | 2.85 | F |
3668 | 4384 | 0.040425 | GCGGGCGCACTATATTTTGG | 60.040 | 55.000 | 8.62 | 0.0 | 41.49 | 3.28 | F |
5156 | 5979 | 0.248215 | CACTGAAAATGGATCGCGGC | 60.248 | 55.000 | 6.13 | 0.0 | 0.00 | 6.53 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1075 | 1269 | 0.393537 | AAGGGCTGAAGGAAGATGCG | 60.394 | 55.000 | 0.00 | 0.0 | 0.00 | 4.73 | R |
3001 | 3551 | 1.131883 | CTGCTGCTATCACTTGCCAAC | 59.868 | 52.381 | 0.00 | 0.0 | 0.00 | 3.77 | R |
3598 | 4314 | 0.038892 | TAACCAACGAGACCGACTGC | 60.039 | 55.000 | 0.00 | 0.0 | 39.50 | 4.40 | R |
5139 | 5962 | 0.248215 | GTGCCGCGATCCATTTTCAG | 60.248 | 55.000 | 8.23 | 0.0 | 0.00 | 3.02 | R |
5545 | 6464 | 0.531532 | ACGGCAGCATCTCATACAGC | 60.532 | 55.000 | 0.00 | 0.0 | 0.00 | 4.40 | R |
5563 | 6482 | 4.588278 | GTCCAGCGTATTCAATTGCTAAC | 58.412 | 43.478 | 0.00 | 0.0 | 35.56 | 2.34 | R |
6982 | 9348 | 0.321564 | TTGCAACTGGAGGTCATCGG | 60.322 | 55.000 | 0.00 | 0.0 | 0.00 | 4.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
156 | 177 | 0.238553 | GCTCCACCTTCGTTGCTTTC | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
164 | 185 | 3.002791 | CCTTCGTTGCTTTCTATCTGCA | 58.997 | 45.455 | 0.00 | 0.00 | 34.69 | 4.41 |
165 | 186 | 3.436704 | CCTTCGTTGCTTTCTATCTGCAA | 59.563 | 43.478 | 0.00 | 0.00 | 43.25 | 4.08 |
166 | 187 | 4.436584 | CCTTCGTTGCTTTCTATCTGCAAG | 60.437 | 45.833 | 0.00 | 0.00 | 45.55 | 4.01 |
293 | 317 | 6.324522 | GCAGCGAGCTAATAACTATATGTG | 57.675 | 41.667 | 0.00 | 0.00 | 41.15 | 3.21 |
415 | 439 | 2.508526 | ACAGGCTGAAATGAGTGAACC | 58.491 | 47.619 | 23.66 | 0.00 | 0.00 | 3.62 |
435 | 459 | 3.372822 | ACCAACACACTAAAACGTGTCAG | 59.627 | 43.478 | 0.00 | 0.00 | 45.74 | 3.51 |
445 | 469 | 4.668576 | AAAACGTGTCAGTATGCATCTG | 57.331 | 40.909 | 0.19 | 10.96 | 34.76 | 2.90 |
451 | 475 | 4.208666 | CGTGTCAGTATGCATCTGATTCAG | 59.791 | 45.833 | 22.97 | 7.38 | 42.63 | 3.02 |
457 | 481 | 8.404000 | GTCAGTATGCATCTGATTCAGAAAAAT | 58.596 | 33.333 | 19.73 | 14.53 | 42.63 | 1.82 |
458 | 482 | 8.403236 | TCAGTATGCATCTGATTCAGAAAAATG | 58.597 | 33.333 | 19.73 | 14.09 | 39.18 | 2.32 |
459 | 483 | 7.648112 | CAGTATGCATCTGATTCAGAAAAATGG | 59.352 | 37.037 | 19.73 | 7.28 | 44.04 | 3.16 |
587 | 727 | 9.770097 | TTCCATACAAAAACAAAATAAGATGCA | 57.230 | 25.926 | 0.00 | 0.00 | 0.00 | 3.96 |
671 | 860 | 4.808414 | TCTTCCCATCTACACACAAGAG | 57.192 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
705 | 894 | 2.744202 | GTTACCTCACAGCATGACCTTG | 59.256 | 50.000 | 0.00 | 0.00 | 39.69 | 3.61 |
985 | 1179 | 5.426509 | AGGTCACATACATCTCCATCAGAAA | 59.573 | 40.000 | 0.00 | 0.00 | 33.62 | 2.52 |
989 | 1183 | 4.164796 | ACATACATCTCCATCAGAAAGCCA | 59.835 | 41.667 | 0.00 | 0.00 | 33.62 | 4.75 |
1029 | 1223 | 1.005630 | GGTCGCTGTTGCTCTCACT | 60.006 | 57.895 | 0.00 | 0.00 | 36.97 | 3.41 |
1177 | 1534 | 4.609995 | GCATGCATTGCCTTTGCT | 57.390 | 50.000 | 14.21 | 0.00 | 46.15 | 3.91 |
1529 | 1887 | 1.768870 | ACCTGTTAGTTCAGCACACCT | 59.231 | 47.619 | 0.00 | 0.00 | 34.47 | 4.00 |
1636 | 1994 | 3.512680 | CTCGACACCAACTAGCCTTTAG | 58.487 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1642 | 2000 | 5.099042 | CACCAACTAGCCTTTAGGTGTAT | 57.901 | 43.478 | 0.00 | 0.00 | 41.11 | 2.29 |
1728 | 2086 | 7.288672 | CCTTTAAGTGTTAAGTTCGTAAGCAG | 58.711 | 38.462 | 0.00 | 0.00 | 37.18 | 4.24 |
1764 | 2122 | 4.939052 | ACCAGGATCTAACGTGAATAGG | 57.061 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2300 | 2658 | 5.914898 | AGCATTTGTACCATTTCTTACCC | 57.085 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
2353 | 2711 | 6.179756 | TGGAGCACTTCTATTTTCAGCAATA | 58.820 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2389 | 2747 | 2.357836 | CCAGAATGCAGCCCACCT | 59.642 | 61.111 | 0.00 | 0.00 | 31.97 | 4.00 |
2457 | 2815 | 5.581874 | CAGCCTTTTTCAATCGGCATTTATT | 59.418 | 36.000 | 0.00 | 0.00 | 44.85 | 1.40 |
2631 | 3153 | 7.966111 | TGCAAAACTTGTAACATATAGTACCG | 58.034 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
2668 | 3190 | 1.686355 | TTTCAACAACATGAGCCCGT | 58.314 | 45.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2949 | 3498 | 4.569564 | GGGCAGTAAAAGTAGTTATGACCG | 59.430 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
3038 | 3588 | 5.182001 | AGCAGCAGTAGTTTTCCATAAAGTG | 59.818 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3293 | 3853 | 9.110502 | GAAAATACAGTATATTATAGGCAGGCC | 57.889 | 37.037 | 0.97 | 0.97 | 0.00 | 5.19 |
3454 | 4170 | 7.899648 | ATTTATATACCTGATACTCCCTCCG | 57.100 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3455 | 4171 | 4.949966 | ATATACCTGATACTCCCTCCGT | 57.050 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3456 | 4172 | 3.614568 | ATACCTGATACTCCCTCCGTT | 57.385 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
3457 | 4173 | 1.777941 | ACCTGATACTCCCTCCGTTC | 58.222 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3458 | 4174 | 1.041437 | CCTGATACTCCCTCCGTTCC | 58.959 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3459 | 4175 | 1.688311 | CCTGATACTCCCTCCGTTCCA | 60.688 | 57.143 | 0.00 | 0.00 | 0.00 | 3.53 |
3460 | 4176 | 2.108168 | CTGATACTCCCTCCGTTCCAA | 58.892 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
3461 | 4177 | 2.500098 | CTGATACTCCCTCCGTTCCAAA | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
3462 | 4178 | 2.907696 | TGATACTCCCTCCGTTCCAAAA | 59.092 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
3463 | 4179 | 3.521937 | TGATACTCCCTCCGTTCCAAAAT | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3464 | 4180 | 4.717778 | TGATACTCCCTCCGTTCCAAAATA | 59.282 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
3465 | 4181 | 5.368523 | TGATACTCCCTCCGTTCCAAAATAT | 59.631 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3466 | 4182 | 6.555738 | TGATACTCCCTCCGTTCCAAAATATA | 59.444 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
3467 | 4183 | 5.291905 | ACTCCCTCCGTTCCAAAATATAG | 57.708 | 43.478 | 0.00 | 0.00 | 0.00 | 1.31 |
3468 | 4184 | 4.065789 | CTCCCTCCGTTCCAAAATATAGC | 58.934 | 47.826 | 0.00 | 0.00 | 0.00 | 2.97 |
3469 | 4185 | 2.806244 | CCCTCCGTTCCAAAATATAGCG | 59.194 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3470 | 4186 | 2.223377 | CCTCCGTTCCAAAATATAGCGC | 59.777 | 50.000 | 0.00 | 0.00 | 0.00 | 5.92 |
3471 | 4187 | 3.131396 | CTCCGTTCCAAAATATAGCGCT | 58.869 | 45.455 | 17.26 | 17.26 | 0.00 | 5.92 |
3472 | 4188 | 3.537580 | TCCGTTCCAAAATATAGCGCTT | 58.462 | 40.909 | 18.68 | 6.25 | 0.00 | 4.68 |
3473 | 4189 | 3.558418 | TCCGTTCCAAAATATAGCGCTTC | 59.442 | 43.478 | 18.68 | 0.00 | 0.00 | 3.86 |
3474 | 4190 | 3.303791 | CCGTTCCAAAATATAGCGCTTCC | 60.304 | 47.826 | 18.68 | 0.00 | 0.00 | 3.46 |
3475 | 4191 | 3.560068 | CGTTCCAAAATATAGCGCTTCCT | 59.440 | 43.478 | 18.68 | 3.25 | 0.00 | 3.36 |
3476 | 4192 | 4.318831 | CGTTCCAAAATATAGCGCTTCCTC | 60.319 | 45.833 | 18.68 | 0.00 | 0.00 | 3.71 |
3477 | 4193 | 4.689612 | TCCAAAATATAGCGCTTCCTCT | 57.310 | 40.909 | 18.68 | 0.00 | 0.00 | 3.69 |
3478 | 4194 | 5.801531 | TCCAAAATATAGCGCTTCCTCTA | 57.198 | 39.130 | 18.68 | 0.00 | 0.00 | 2.43 |
3479 | 4195 | 6.360370 | TCCAAAATATAGCGCTTCCTCTAT | 57.640 | 37.500 | 18.68 | 3.84 | 0.00 | 1.98 |
3480 | 4196 | 6.769512 | TCCAAAATATAGCGCTTCCTCTATT | 58.230 | 36.000 | 18.68 | 8.92 | 0.00 | 1.73 |
3481 | 4197 | 6.874134 | TCCAAAATATAGCGCTTCCTCTATTC | 59.126 | 38.462 | 18.68 | 0.00 | 0.00 | 1.75 |
3482 | 4198 | 6.092807 | CCAAAATATAGCGCTTCCTCTATTCC | 59.907 | 42.308 | 18.68 | 0.00 | 0.00 | 3.01 |
3483 | 4199 | 5.346181 | AATATAGCGCTTCCTCTATTCCC | 57.654 | 43.478 | 18.68 | 0.00 | 0.00 | 3.97 |
3484 | 4200 | 0.959553 | TAGCGCTTCCTCTATTCCCG | 59.040 | 55.000 | 18.68 | 0.00 | 0.00 | 5.14 |
3485 | 4201 | 1.043673 | AGCGCTTCCTCTATTCCCGT | 61.044 | 55.000 | 2.64 | 0.00 | 0.00 | 5.28 |
3486 | 4202 | 0.876342 | GCGCTTCCTCTATTCCCGTG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3487 | 4203 | 0.876342 | CGCTTCCTCTATTCCCGTGC | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3488 | 4204 | 0.466124 | GCTTCCTCTATTCCCGTGCT | 59.534 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3489 | 4205 | 1.134371 | GCTTCCTCTATTCCCGTGCTT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
3490 | 4206 | 2.827652 | CTTCCTCTATTCCCGTGCTTC | 58.172 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3491 | 4207 | 1.860641 | TCCTCTATTCCCGTGCTTCA | 58.139 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3492 | 4208 | 2.184533 | TCCTCTATTCCCGTGCTTCAA | 58.815 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
3493 | 4209 | 2.093658 | TCCTCTATTCCCGTGCTTCAAC | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3494 | 4210 | 2.093447 | CCTCTATTCCCGTGCTTCAACT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3495 | 4211 | 3.600388 | CTCTATTCCCGTGCTTCAACTT | 58.400 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
3496 | 4212 | 4.003648 | CTCTATTCCCGTGCTTCAACTTT | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
3497 | 4213 | 3.751175 | TCTATTCCCGTGCTTCAACTTTG | 59.249 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
3498 | 4214 | 2.045561 | TTCCCGTGCTTCAACTTTGA | 57.954 | 45.000 | 0.00 | 0.00 | 34.92 | 2.69 |
3499 | 4215 | 1.305201 | TCCCGTGCTTCAACTTTGAC | 58.695 | 50.000 | 0.00 | 0.00 | 36.83 | 3.18 |
3500 | 4216 | 0.310854 | CCCGTGCTTCAACTTTGACC | 59.689 | 55.000 | 0.00 | 0.00 | 36.83 | 4.02 |
3501 | 4217 | 1.021202 | CCGTGCTTCAACTTTGACCA | 58.979 | 50.000 | 0.00 | 0.00 | 36.83 | 4.02 |
3502 | 4218 | 1.608590 | CCGTGCTTCAACTTTGACCAT | 59.391 | 47.619 | 0.00 | 0.00 | 36.83 | 3.55 |
3503 | 4219 | 2.811431 | CCGTGCTTCAACTTTGACCATA | 59.189 | 45.455 | 0.00 | 0.00 | 36.83 | 2.74 |
3504 | 4220 | 3.252215 | CCGTGCTTCAACTTTGACCATAA | 59.748 | 43.478 | 0.00 | 0.00 | 36.83 | 1.90 |
3505 | 4221 | 4.261405 | CCGTGCTTCAACTTTGACCATAAA | 60.261 | 41.667 | 0.00 | 0.00 | 36.83 | 1.40 |
3506 | 4222 | 5.460646 | CGTGCTTCAACTTTGACCATAAAT | 58.539 | 37.500 | 0.00 | 0.00 | 36.83 | 1.40 |
3507 | 4223 | 5.920273 | CGTGCTTCAACTTTGACCATAAATT | 59.080 | 36.000 | 0.00 | 0.00 | 36.83 | 1.82 |
3508 | 4224 | 6.420604 | CGTGCTTCAACTTTGACCATAAATTT | 59.579 | 34.615 | 0.00 | 0.00 | 36.83 | 1.82 |
3509 | 4225 | 7.593273 | CGTGCTTCAACTTTGACCATAAATTTA | 59.407 | 33.333 | 0.00 | 0.00 | 36.83 | 1.40 |
3510 | 4226 | 9.255304 | GTGCTTCAACTTTGACCATAAATTTAA | 57.745 | 29.630 | 1.21 | 0.00 | 36.83 | 1.52 |
3511 | 4227 | 9.255304 | TGCTTCAACTTTGACCATAAATTTAAC | 57.745 | 29.630 | 1.21 | 0.00 | 36.83 | 2.01 |
3512 | 4228 | 8.708742 | GCTTCAACTTTGACCATAAATTTAACC | 58.291 | 33.333 | 1.21 | 0.00 | 36.83 | 2.85 |
3513 | 4229 | 9.757227 | CTTCAACTTTGACCATAAATTTAACCA | 57.243 | 29.630 | 1.21 | 0.00 | 36.83 | 3.67 |
3515 | 4231 | 9.535878 | TCAACTTTGACCATAAATTTAACCAAC | 57.464 | 29.630 | 1.21 | 0.00 | 31.01 | 3.77 |
3516 | 4232 | 9.319143 | CAACTTTGACCATAAATTTAACCAACA | 57.681 | 29.630 | 1.21 | 0.00 | 0.00 | 3.33 |
3517 | 4233 | 9.892130 | AACTTTGACCATAAATTTAACCAACAA | 57.108 | 25.926 | 1.21 | 3.68 | 0.00 | 2.83 |
3518 | 4234 | 9.541143 | ACTTTGACCATAAATTTAACCAACAAG | 57.459 | 29.630 | 1.21 | 4.46 | 0.00 | 3.16 |
3519 | 4235 | 9.757227 | CTTTGACCATAAATTTAACCAACAAGA | 57.243 | 29.630 | 1.21 | 0.00 | 0.00 | 3.02 |
3520 | 4236 | 9.535878 | TTTGACCATAAATTTAACCAACAAGAC | 57.464 | 29.630 | 1.21 | 0.00 | 0.00 | 3.01 |
3521 | 4237 | 7.662897 | TGACCATAAATTTAACCAACAAGACC | 58.337 | 34.615 | 1.21 | 0.00 | 0.00 | 3.85 |
3522 | 4238 | 6.683715 | ACCATAAATTTAACCAACAAGACCG | 58.316 | 36.000 | 1.21 | 0.00 | 0.00 | 4.79 |
3523 | 4239 | 6.490721 | ACCATAAATTTAACCAACAAGACCGA | 59.509 | 34.615 | 1.21 | 0.00 | 0.00 | 4.69 |
3524 | 4240 | 6.804783 | CCATAAATTTAACCAACAAGACCGAC | 59.195 | 38.462 | 1.21 | 0.00 | 0.00 | 4.79 |
3525 | 4241 | 7.308951 | CCATAAATTTAACCAACAAGACCGACT | 60.309 | 37.037 | 1.21 | 0.00 | 0.00 | 4.18 |
3526 | 4242 | 5.432885 | AATTTAACCAACAAGACCGACTG | 57.567 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
3527 | 4243 | 1.873698 | TAACCAACAAGACCGACTGC | 58.126 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3528 | 4244 | 1.157870 | AACCAACAAGACCGACTGCG | 61.158 | 55.000 | 0.00 | 0.00 | 37.24 | 5.18 |
3551 | 4267 | 3.606687 | CGGGAGCAAAAGTTATACCAGT | 58.393 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3552 | 4268 | 3.374058 | CGGGAGCAAAAGTTATACCAGTG | 59.626 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
3553 | 4269 | 4.585879 | GGGAGCAAAAGTTATACCAGTGA | 58.414 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
3554 | 4270 | 5.007682 | GGGAGCAAAAGTTATACCAGTGAA | 58.992 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3555 | 4271 | 5.652452 | GGGAGCAAAAGTTATACCAGTGAAT | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3556 | 4272 | 6.152831 | GGGAGCAAAAGTTATACCAGTGAATT | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
3557 | 4273 | 7.251281 | GGAGCAAAAGTTATACCAGTGAATTC | 58.749 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
3558 | 4274 | 6.842163 | AGCAAAAGTTATACCAGTGAATTCG | 58.158 | 36.000 | 0.04 | 0.00 | 0.00 | 3.34 |
3559 | 4275 | 6.430000 | AGCAAAAGTTATACCAGTGAATTCGT | 59.570 | 34.615 | 0.04 | 0.00 | 0.00 | 3.85 |
3560 | 4276 | 7.604927 | AGCAAAAGTTATACCAGTGAATTCGTA | 59.395 | 33.333 | 0.04 | 0.00 | 0.00 | 3.43 |
3561 | 4277 | 8.395633 | GCAAAAGTTATACCAGTGAATTCGTAT | 58.604 | 33.333 | 0.04 | 5.16 | 0.00 | 3.06 |
3564 | 4280 | 9.661563 | AAAGTTATACCAGTGAATTCGTATTCA | 57.338 | 29.630 | 12.80 | 12.80 | 45.99 | 2.57 |
3613 | 4329 | 2.050351 | ACGCAGTCGGTCTCGTTG | 60.050 | 61.111 | 0.00 | 0.00 | 29.74 | 4.10 |
3614 | 4330 | 2.805353 | CGCAGTCGGTCTCGTTGG | 60.805 | 66.667 | 0.00 | 0.00 | 37.69 | 3.77 |
3615 | 4331 | 2.338984 | GCAGTCGGTCTCGTTGGT | 59.661 | 61.111 | 0.00 | 0.00 | 37.69 | 3.67 |
3616 | 4332 | 1.300697 | GCAGTCGGTCTCGTTGGTT | 60.301 | 57.895 | 0.00 | 0.00 | 37.69 | 3.67 |
3617 | 4333 | 0.038892 | GCAGTCGGTCTCGTTGGTTA | 60.039 | 55.000 | 0.00 | 0.00 | 37.69 | 2.85 |
3618 | 4334 | 1.603678 | GCAGTCGGTCTCGTTGGTTAA | 60.604 | 52.381 | 0.00 | 0.00 | 37.69 | 2.01 |
3619 | 4335 | 2.746269 | CAGTCGGTCTCGTTGGTTAAA | 58.254 | 47.619 | 0.00 | 0.00 | 37.69 | 1.52 |
3620 | 4336 | 3.323243 | CAGTCGGTCTCGTTGGTTAAAT | 58.677 | 45.455 | 0.00 | 0.00 | 37.69 | 1.40 |
3621 | 4337 | 3.744426 | CAGTCGGTCTCGTTGGTTAAATT | 59.256 | 43.478 | 0.00 | 0.00 | 37.69 | 1.82 |
3622 | 4338 | 4.212636 | CAGTCGGTCTCGTTGGTTAAATTT | 59.787 | 41.667 | 0.00 | 0.00 | 37.69 | 1.82 |
3623 | 4339 | 5.406175 | CAGTCGGTCTCGTTGGTTAAATTTA | 59.594 | 40.000 | 0.00 | 0.00 | 37.69 | 1.40 |
3624 | 4340 | 6.091713 | CAGTCGGTCTCGTTGGTTAAATTTAT | 59.908 | 38.462 | 0.00 | 0.00 | 37.69 | 1.40 |
3625 | 4341 | 6.091713 | AGTCGGTCTCGTTGGTTAAATTTATG | 59.908 | 38.462 | 0.00 | 0.00 | 37.69 | 1.90 |
3626 | 4342 | 5.352016 | TCGGTCTCGTTGGTTAAATTTATGG | 59.648 | 40.000 | 0.00 | 0.00 | 37.69 | 2.74 |
3627 | 4343 | 5.122711 | CGGTCTCGTTGGTTAAATTTATGGT | 59.877 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3628 | 4344 | 6.549061 | GGTCTCGTTGGTTAAATTTATGGTC | 58.451 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3629 | 4345 | 6.149807 | GGTCTCGTTGGTTAAATTTATGGTCA | 59.850 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
3630 | 4346 | 7.308710 | GGTCTCGTTGGTTAAATTTATGGTCAA | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3631 | 4347 | 8.077386 | GTCTCGTTGGTTAAATTTATGGTCAAA | 58.923 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3632 | 4348 | 8.630917 | TCTCGTTGGTTAAATTTATGGTCAAAA | 58.369 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
3633 | 4349 | 9.418045 | CTCGTTGGTTAAATTTATGGTCAAAAT | 57.582 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3634 | 4350 | 9.765795 | TCGTTGGTTAAATTTATGGTCAAAATT | 57.234 | 25.926 | 0.00 | 0.00 | 37.98 | 1.82 |
3635 | 4351 | 9.804547 | CGTTGGTTAAATTTATGGTCAAAATTG | 57.195 | 29.630 | 0.00 | 0.00 | 36.81 | 2.32 |
3638 | 4354 | 9.495572 | TGGTTAAATTTATGGTCAAAATTGGAC | 57.504 | 29.630 | 0.00 | 0.00 | 36.81 | 4.02 |
3645 | 4361 | 2.194201 | GTCAAAATTGGACCTCGGGA | 57.806 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3646 | 4362 | 2.510613 | GTCAAAATTGGACCTCGGGAA | 58.489 | 47.619 | 0.00 | 0.00 | 0.00 | 3.97 |
3647 | 4363 | 2.488153 | GTCAAAATTGGACCTCGGGAAG | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3648 | 4364 | 1.202348 | CAAAATTGGACCTCGGGAAGC | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3649 | 4365 | 0.676782 | AAATTGGACCTCGGGAAGCG | 60.677 | 55.000 | 0.00 | 0.00 | 0.00 | 4.68 |
3650 | 4366 | 3.682292 | ATTGGACCTCGGGAAGCGC | 62.682 | 63.158 | 0.00 | 0.00 | 0.00 | 5.92 |
3665 | 4381 | 3.637714 | CGCGGGCGCACTATATTT | 58.362 | 55.556 | 8.62 | 0.00 | 42.06 | 1.40 |
3666 | 4382 | 1.938861 | CGCGGGCGCACTATATTTT | 59.061 | 52.632 | 8.62 | 0.00 | 42.06 | 1.82 |
3667 | 4383 | 0.384230 | CGCGGGCGCACTATATTTTG | 60.384 | 55.000 | 8.62 | 0.00 | 42.06 | 2.44 |
3668 | 4384 | 0.040425 | GCGGGCGCACTATATTTTGG | 60.040 | 55.000 | 8.62 | 0.00 | 41.49 | 3.28 |
3669 | 4385 | 1.588674 | CGGGCGCACTATATTTTGGA | 58.411 | 50.000 | 8.62 | 0.00 | 0.00 | 3.53 |
3670 | 4386 | 1.944024 | CGGGCGCACTATATTTTGGAA | 59.056 | 47.619 | 8.62 | 0.00 | 0.00 | 3.53 |
3671 | 4387 | 2.552315 | CGGGCGCACTATATTTTGGAAT | 59.448 | 45.455 | 8.62 | 0.00 | 0.00 | 3.01 |
3672 | 4388 | 3.609175 | CGGGCGCACTATATTTTGGAATG | 60.609 | 47.826 | 8.62 | 0.00 | 0.00 | 2.67 |
3673 | 4389 | 3.305335 | GGGCGCACTATATTTTGGAATGG | 60.305 | 47.826 | 10.83 | 0.00 | 0.00 | 3.16 |
3674 | 4390 | 3.568007 | GGCGCACTATATTTTGGAATGGA | 59.432 | 43.478 | 10.83 | 0.00 | 0.00 | 3.41 |
3675 | 4391 | 4.320494 | GGCGCACTATATTTTGGAATGGAG | 60.320 | 45.833 | 10.83 | 0.00 | 0.00 | 3.86 |
3676 | 4392 | 4.320494 | GCGCACTATATTTTGGAATGGAGG | 60.320 | 45.833 | 0.30 | 0.00 | 0.00 | 4.30 |
3677 | 4393 | 4.216257 | CGCACTATATTTTGGAATGGAGGG | 59.784 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3678 | 4394 | 5.385198 | GCACTATATTTTGGAATGGAGGGA | 58.615 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
3679 | 4395 | 5.474876 | GCACTATATTTTGGAATGGAGGGAG | 59.525 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3680 | 4396 | 6.605119 | CACTATATTTTGGAATGGAGGGAGT | 58.395 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3690 | 4406 | 8.518720 | TTGGAATGGAGGGAGTAAATCATATA | 57.481 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
3757 | 4517 | 8.136165 | GTGTCTACAGATATTACATCTCCGTTT | 58.864 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
3781 | 4541 | 8.956533 | TTGTGCATGTTATAGTAGAATAGCAA | 57.043 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
4017 | 4784 | 5.047731 | GCTTTTAGATGGAATAGGGAATGGC | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4071 | 4847 | 8.921205 | TCTACAATGACTAAACTATACCCCTTC | 58.079 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
4160 | 4937 | 5.098663 | ACTAGATACTCCCCACCTTTTCAA | 58.901 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
4455 | 5238 | 3.178046 | TCACTATTAACTGTCCCTGGCA | 58.822 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
4488 | 5271 | 9.745880 | GTCTCAACTTCGAAATAACTATCCATA | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
4543 | 5327 | 4.929146 | ACCCCTACTTTAATGTGCTCTT | 57.071 | 40.909 | 4.33 | 0.00 | 0.00 | 2.85 |
4604 | 5389 | 3.369242 | TGCATGGTCATTCCTCATCAA | 57.631 | 42.857 | 0.00 | 0.00 | 37.07 | 2.57 |
4671 | 5456 | 3.815401 | GAGGAGACTTGCAGCTAAACAAA | 59.185 | 43.478 | 0.00 | 0.00 | 44.43 | 2.83 |
4722 | 5507 | 8.892723 | TGCTGAATTACATGTAGGAGTATTTTG | 58.107 | 33.333 | 5.56 | 2.09 | 0.00 | 2.44 |
4919 | 5742 | 9.836864 | ACTGATTTGGAAAGAAAATAAGCTTTT | 57.163 | 25.926 | 3.20 | 0.00 | 34.69 | 2.27 |
5037 | 5860 | 6.982141 | TGTAATTATCGTGGGTATGTTGACTC | 59.018 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
5050 | 5873 | 7.309621 | GGGTATGTTGACTCCGCTTATTCTATA | 60.310 | 40.741 | 0.00 | 0.00 | 0.00 | 1.31 |
5118 | 5941 | 8.418662 | TCATGATGTACTAACCCATGTTACTAC | 58.581 | 37.037 | 0.00 | 0.00 | 37.16 | 2.73 |
5139 | 5962 | 2.805099 | CCTGTTTGAGAAGCTCAGTCAC | 59.195 | 50.000 | 0.00 | 0.00 | 41.75 | 3.67 |
5153 | 5976 | 3.002791 | TCAGTCACTGAAAATGGATCGC | 58.997 | 45.455 | 4.55 | 0.00 | 37.57 | 4.58 |
5156 | 5979 | 0.248215 | CACTGAAAATGGATCGCGGC | 60.248 | 55.000 | 6.13 | 0.00 | 0.00 | 6.53 |
5295 | 6214 | 5.607171 | CCCCTTAATGAGTAACATCCTAGGT | 59.393 | 44.000 | 9.08 | 0.00 | 38.38 | 3.08 |
5296 | 6215 | 6.101296 | CCCCTTAATGAGTAACATCCTAGGTT | 59.899 | 42.308 | 9.08 | 0.00 | 38.38 | 3.50 |
5297 | 6216 | 6.992715 | CCCTTAATGAGTAACATCCTAGGTTG | 59.007 | 42.308 | 16.86 | 16.86 | 38.38 | 3.77 |
5298 | 6217 | 7.147549 | CCCTTAATGAGTAACATCCTAGGTTGA | 60.148 | 40.741 | 23.87 | 2.28 | 38.38 | 3.18 |
5299 | 6218 | 7.928706 | CCTTAATGAGTAACATCCTAGGTTGAG | 59.071 | 40.741 | 23.87 | 8.39 | 38.38 | 3.02 |
5300 | 6219 | 6.875972 | AATGAGTAACATCCTAGGTTGAGT | 57.124 | 37.500 | 23.87 | 14.15 | 38.38 | 3.41 |
5301 | 6220 | 6.875972 | ATGAGTAACATCCTAGGTTGAGTT | 57.124 | 37.500 | 23.87 | 17.58 | 33.46 | 3.01 |
5302 | 6221 | 6.681729 | TGAGTAACATCCTAGGTTGAGTTT | 57.318 | 37.500 | 23.87 | 11.82 | 0.00 | 2.66 |
5303 | 6222 | 6.698380 | TGAGTAACATCCTAGGTTGAGTTTC | 58.302 | 40.000 | 23.87 | 15.59 | 0.00 | 2.78 |
5304 | 6223 | 5.721232 | AGTAACATCCTAGGTTGAGTTTCG | 58.279 | 41.667 | 23.87 | 0.00 | 0.00 | 3.46 |
5321 | 6240 | 4.393680 | AGTTTCGTTGAGTTTGTGCACTTA | 59.606 | 37.500 | 19.41 | 3.02 | 0.00 | 2.24 |
5357 | 6276 | 8.099364 | TCCTCTTTTGTATCTCAAACAATGAC | 57.901 | 34.615 | 0.00 | 0.00 | 44.39 | 3.06 |
5449 | 6368 | 9.268282 | TCTACTTGGATTAGGTAATGAGAAACT | 57.732 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
5545 | 6464 | 3.535561 | AGGAGTAATGGCATTTCTGACG | 58.464 | 45.455 | 21.90 | 0.00 | 30.50 | 4.35 |
5563 | 6482 | 1.554891 | CGCTGTATGAGATGCTGCCG | 61.555 | 60.000 | 0.00 | 0.00 | 36.71 | 5.69 |
5845 | 7864 | 5.411361 | CGGAATACCTTTTGTTCATGACTCA | 59.589 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5885 | 7904 | 3.571401 | CCCAAGAGAAACAACTGCTTCAT | 59.429 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
5898 | 7917 | 6.868339 | ACAACTGCTTCATACAAATTTAAGGC | 59.132 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
6036 | 8055 | 6.597562 | ACCGATACATAAATTGGTGTACCAT | 58.402 | 36.000 | 4.31 | 0.00 | 46.97 | 3.55 |
6165 | 8184 | 4.020662 | GTCAGTCTTCCAAAGGAGATGAGT | 60.021 | 45.833 | 0.00 | 0.00 | 31.21 | 3.41 |
6348 | 8370 | 5.242838 | AGAAATGAATAGTTGAACCCGCAAA | 59.757 | 36.000 | 0.00 | 0.00 | 0.00 | 3.68 |
6349 | 8371 | 3.907894 | TGAATAGTTGAACCCGCAAAC | 57.092 | 42.857 | 0.00 | 0.00 | 0.00 | 2.93 |
6354 | 8376 | 0.309612 | GTTGAACCCGCAAACGACAT | 59.690 | 50.000 | 0.00 | 0.00 | 43.93 | 3.06 |
6413 | 8435 | 6.482308 | GTCATAAACCGTCAATAATAGTGCCT | 59.518 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
6416 | 8438 | 2.943033 | ACCGTCAATAATAGTGCCTTGC | 59.057 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
6419 | 8441 | 4.036734 | CCGTCAATAATAGTGCCTTGCATT | 59.963 | 41.667 | 0.00 | 0.00 | 41.91 | 3.56 |
6427 | 8449 | 6.683974 | AATAGTGCCTTGCATTTACTACAG | 57.316 | 37.500 | 0.00 | 0.00 | 41.91 | 2.74 |
6508 | 8530 | 7.622502 | TGAAAACCTAGTAACTAAGGAAGGT | 57.377 | 36.000 | 0.00 | 0.00 | 38.98 | 3.50 |
6530 | 8552 | 7.101054 | AGGTTGCACTTTAACTACGAATGATA | 58.899 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
6545 | 8567 | 0.824109 | TGATACTCAGCAACCCTCCG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
6546 | 8568 | 0.824759 | GATACTCAGCAACCCTCCGT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
6602 | 8624 | 7.272978 | TGAGTCCCTAACAGTAGCAATTAATC | 58.727 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
6603 | 8625 | 6.281405 | AGTCCCTAACAGTAGCAATTAATCG | 58.719 | 40.000 | 0.00 | 0.00 | 0.00 | 3.34 |
6690 | 8713 | 7.496346 | TGGACCTAAGTAATCACTGAGAAAT | 57.504 | 36.000 | 0.00 | 0.00 | 35.44 | 2.17 |
6895 | 9261 | 5.353123 | TCACATTTCCGTATTTTCTACAGGC | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
6968 | 9334 | 9.605275 | TCTCCAATCTATTACAATGACTTTCAG | 57.395 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
6981 | 9347 | 1.211456 | CTTTCAGATCTGGGCCCTCT | 58.789 | 55.000 | 25.70 | 15.39 | 0.00 | 3.69 |
6982 | 9348 | 1.140652 | CTTTCAGATCTGGGCCCTCTC | 59.859 | 57.143 | 25.70 | 16.50 | 0.00 | 3.20 |
7001 | 9368 | 0.321564 | CCGATGACCTCCAGTTGCAA | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
7030 | 9397 | 5.122396 | ACCGTAGCTGCAAGAAAATTAGAAG | 59.878 | 40.000 | 1.02 | 0.00 | 34.07 | 2.85 |
7087 | 9457 | 9.457436 | AAAACTGTACTTACTGGAAGAAGAAAA | 57.543 | 29.630 | 6.64 | 0.00 | 38.65 | 2.29 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
156 | 177 | 8.986847 | CCATAGTTAACTGATTCTTGCAGATAG | 58.013 | 37.037 | 18.56 | 0.00 | 36.86 | 2.08 |
181 | 204 | 5.404366 | GCAATTGCATCATCAACATGATACC | 59.596 | 40.000 | 25.36 | 0.00 | 46.44 | 2.73 |
253 | 277 | 2.012673 | CTGCTGGTAATCTGAGGTTGC | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
289 | 313 | 5.584253 | ATCGTCTAAAGTCTGTAGCACAT | 57.416 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
292 | 316 | 5.638596 | TGAATCGTCTAAAGTCTGTAGCA | 57.361 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
293 | 317 | 5.288952 | GGTTGAATCGTCTAAAGTCTGTAGC | 59.711 | 44.000 | 0.00 | 0.00 | 0.00 | 3.58 |
399 | 423 | 3.066621 | TGTGTTGGTTCACTCATTTCAGC | 59.933 | 43.478 | 0.00 | 0.00 | 38.90 | 4.26 |
435 | 459 | 7.486647 | ACCATTTTTCTGAATCAGATGCATAC | 58.513 | 34.615 | 14.31 | 0.00 | 40.39 | 2.39 |
472 | 496 | 8.160106 | ACTCCCTCCATTCACAAATATAAGATC | 58.840 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
585 | 725 | 0.393808 | TGCTAAAACCCGAGGGATGC | 60.394 | 55.000 | 16.26 | 11.01 | 38.96 | 3.91 |
587 | 727 | 1.064685 | CCTTGCTAAAACCCGAGGGAT | 60.065 | 52.381 | 16.26 | 0.00 | 38.96 | 3.85 |
985 | 1179 | 3.072184 | GGATCCATATGAACAGACTGGCT | 59.928 | 47.826 | 6.95 | 0.00 | 0.00 | 4.75 |
989 | 1183 | 4.103785 | CCTTGGGATCCATATGAACAGACT | 59.896 | 45.833 | 15.23 | 0.00 | 31.53 | 3.24 |
1029 | 1223 | 2.113433 | GCCGCCTACGAGAGACAGA | 61.113 | 63.158 | 0.00 | 0.00 | 43.93 | 3.41 |
1075 | 1269 | 0.393537 | AAGGGCTGAAGGAAGATGCG | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
1177 | 1534 | 7.286775 | AGTTACAGCTTTTGAAGGGAAACAATA | 59.713 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
1226 | 1583 | 6.921914 | AGAAAAGAATCTTGATTGGAGCAAG | 58.078 | 36.000 | 0.00 | 0.00 | 43.09 | 4.01 |
1374 | 1732 | 9.294030 | GATGCCAAGTATAAACTGAAAAGATTG | 57.706 | 33.333 | 0.00 | 0.00 | 35.62 | 2.67 |
1541 | 1899 | 1.576356 | GCGATGAGTGAGTGGATTCC | 58.424 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1636 | 1994 | 9.589111 | TTTTTCCAGAAAACTTAAACATACACC | 57.411 | 29.630 | 5.08 | 0.00 | 39.70 | 4.16 |
1642 | 2000 | 6.391537 | AGCGTTTTTCCAGAAAACTTAAACA | 58.608 | 32.000 | 5.08 | 0.00 | 39.70 | 2.83 |
1728 | 2086 | 6.904626 | AGATCCTGGTTATATCATATTGGGC | 58.095 | 40.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1764 | 2122 | 1.905354 | GCATCAGCTTATGGGCCCC | 60.905 | 63.158 | 22.27 | 2.29 | 37.91 | 5.80 |
2124 | 2482 | 9.482627 | AAGAGTTGTCAAAACAATTGTTAAACA | 57.517 | 25.926 | 23.53 | 21.75 | 46.58 | 2.83 |
2300 | 2658 | 3.986277 | ACTGCAAAGCAAGGATGAAAAG | 58.014 | 40.909 | 0.00 | 0.00 | 38.41 | 2.27 |
2353 | 2711 | 1.202818 | GGCTCAGGGAAAATATCGGCT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
2489 | 2847 | 6.790232 | ACAGTCTTCTTTCCCAAATGAAAA | 57.210 | 33.333 | 0.00 | 0.00 | 34.06 | 2.29 |
2631 | 3153 | 6.586868 | TTGAAAACACTGTGATGCATTTTC | 57.413 | 33.333 | 15.86 | 17.79 | 35.64 | 2.29 |
2770 | 3293 | 9.224267 | TCGAGCTCGGTACTAAAATAGTATAAT | 57.776 | 33.333 | 33.98 | 0.00 | 39.57 | 1.28 |
2771 | 3294 | 8.607441 | TCGAGCTCGGTACTAAAATAGTATAA | 57.393 | 34.615 | 33.98 | 6.82 | 39.57 | 0.98 |
2772 | 3295 | 7.148507 | GCTCGAGCTCGGTACTAAAATAGTATA | 60.149 | 40.741 | 33.98 | 9.02 | 39.57 | 1.47 |
2773 | 3296 | 6.348376 | GCTCGAGCTCGGTACTAAAATAGTAT | 60.348 | 42.308 | 33.98 | 0.00 | 39.57 | 2.12 |
2774 | 3297 | 5.049818 | GCTCGAGCTCGGTACTAAAATAGTA | 60.050 | 44.000 | 33.98 | 10.06 | 38.86 | 1.82 |
2775 | 3298 | 4.261114 | GCTCGAGCTCGGTACTAAAATAGT | 60.261 | 45.833 | 33.98 | 0.00 | 40.21 | 2.12 |
2776 | 3299 | 4.220572 | GCTCGAGCTCGGTACTAAAATAG | 58.779 | 47.826 | 33.98 | 20.59 | 40.29 | 1.73 |
2777 | 3300 | 3.628942 | TGCTCGAGCTCGGTACTAAAATA | 59.371 | 43.478 | 35.27 | 11.24 | 42.66 | 1.40 |
2778 | 3301 | 2.426024 | TGCTCGAGCTCGGTACTAAAAT | 59.574 | 45.455 | 35.27 | 0.00 | 42.66 | 1.82 |
2779 | 3302 | 1.814394 | TGCTCGAGCTCGGTACTAAAA | 59.186 | 47.619 | 35.27 | 12.73 | 42.66 | 1.52 |
2780 | 3303 | 1.456296 | TGCTCGAGCTCGGTACTAAA | 58.544 | 50.000 | 35.27 | 13.49 | 42.66 | 1.85 |
2781 | 3304 | 1.676746 | ATGCTCGAGCTCGGTACTAA | 58.323 | 50.000 | 35.27 | 14.55 | 42.66 | 2.24 |
2782 | 3305 | 2.538512 | TATGCTCGAGCTCGGTACTA | 57.461 | 50.000 | 35.27 | 18.26 | 42.66 | 1.82 |
2783 | 3306 | 1.898902 | ATATGCTCGAGCTCGGTACT | 58.101 | 50.000 | 35.27 | 19.22 | 42.66 | 2.73 |
2784 | 3307 | 2.031069 | TCAATATGCTCGAGCTCGGTAC | 60.031 | 50.000 | 35.27 | 23.19 | 42.66 | 3.34 |
2926 | 3450 | 4.569564 | CGGTCATAACTACTTTTACTGCCC | 59.430 | 45.833 | 0.00 | 0.00 | 0.00 | 5.36 |
3001 | 3551 | 1.131883 | CTGCTGCTATCACTTGCCAAC | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
3038 | 3588 | 5.275418 | CGTGATTTATTTTTCTGACATGCGC | 60.275 | 40.000 | 0.00 | 0.00 | 0.00 | 6.09 |
3116 | 3675 | 5.906495 | TGTAGGAAAGGGGCATATAGTTACA | 59.094 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3122 | 3681 | 5.987019 | AACTTGTAGGAAAGGGGCATATA | 57.013 | 39.130 | 0.00 | 0.00 | 0.00 | 0.86 |
3446 | 4162 | 4.065789 | GCTATATTTTGGAACGGAGGGAG | 58.934 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3447 | 4163 | 3.493699 | CGCTATATTTTGGAACGGAGGGA | 60.494 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
3448 | 4164 | 2.806244 | CGCTATATTTTGGAACGGAGGG | 59.194 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3449 | 4165 | 2.223377 | GCGCTATATTTTGGAACGGAGG | 59.777 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3450 | 4166 | 3.131396 | AGCGCTATATTTTGGAACGGAG | 58.869 | 45.455 | 8.99 | 0.00 | 0.00 | 4.63 |
3451 | 4167 | 3.188159 | AGCGCTATATTTTGGAACGGA | 57.812 | 42.857 | 8.99 | 0.00 | 0.00 | 4.69 |
3452 | 4168 | 3.303791 | GGAAGCGCTATATTTTGGAACGG | 60.304 | 47.826 | 12.05 | 0.00 | 0.00 | 4.44 |
3453 | 4169 | 3.560068 | AGGAAGCGCTATATTTTGGAACG | 59.440 | 43.478 | 12.05 | 0.00 | 0.00 | 3.95 |
3454 | 4170 | 4.816925 | AGAGGAAGCGCTATATTTTGGAAC | 59.183 | 41.667 | 12.05 | 0.00 | 0.00 | 3.62 |
3455 | 4171 | 5.036117 | AGAGGAAGCGCTATATTTTGGAA | 57.964 | 39.130 | 12.05 | 0.00 | 0.00 | 3.53 |
3456 | 4172 | 4.689612 | AGAGGAAGCGCTATATTTTGGA | 57.310 | 40.909 | 12.05 | 0.00 | 0.00 | 3.53 |
3457 | 4173 | 6.092807 | GGAATAGAGGAAGCGCTATATTTTGG | 59.907 | 42.308 | 12.05 | 0.00 | 0.00 | 3.28 |
3458 | 4174 | 6.092807 | GGGAATAGAGGAAGCGCTATATTTTG | 59.907 | 42.308 | 12.05 | 0.00 | 0.00 | 2.44 |
3459 | 4175 | 6.174049 | GGGAATAGAGGAAGCGCTATATTTT | 58.826 | 40.000 | 12.05 | 0.00 | 0.00 | 1.82 |
3460 | 4176 | 5.624738 | CGGGAATAGAGGAAGCGCTATATTT | 60.625 | 44.000 | 12.05 | 0.00 | 0.00 | 1.40 |
3461 | 4177 | 4.142138 | CGGGAATAGAGGAAGCGCTATATT | 60.142 | 45.833 | 12.05 | 10.59 | 0.00 | 1.28 |
3462 | 4178 | 3.381908 | CGGGAATAGAGGAAGCGCTATAT | 59.618 | 47.826 | 12.05 | 0.00 | 0.00 | 0.86 |
3463 | 4179 | 2.753452 | CGGGAATAGAGGAAGCGCTATA | 59.247 | 50.000 | 12.05 | 0.00 | 0.00 | 1.31 |
3464 | 4180 | 1.546476 | CGGGAATAGAGGAAGCGCTAT | 59.454 | 52.381 | 12.05 | 0.00 | 0.00 | 2.97 |
3465 | 4181 | 0.959553 | CGGGAATAGAGGAAGCGCTA | 59.040 | 55.000 | 12.05 | 0.00 | 0.00 | 4.26 |
3466 | 4182 | 1.043673 | ACGGGAATAGAGGAAGCGCT | 61.044 | 55.000 | 2.64 | 2.64 | 0.00 | 5.92 |
3467 | 4183 | 0.876342 | CACGGGAATAGAGGAAGCGC | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.92 |
3468 | 4184 | 0.876342 | GCACGGGAATAGAGGAAGCG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 4.68 |
3469 | 4185 | 0.466124 | AGCACGGGAATAGAGGAAGC | 59.534 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3470 | 4186 | 2.168521 | TGAAGCACGGGAATAGAGGAAG | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3471 | 4187 | 2.184533 | TGAAGCACGGGAATAGAGGAA | 58.815 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
3472 | 4188 | 1.860641 | TGAAGCACGGGAATAGAGGA | 58.139 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3473 | 4189 | 2.093447 | AGTTGAAGCACGGGAATAGAGG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3474 | 4190 | 3.252974 | AGTTGAAGCACGGGAATAGAG | 57.747 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
3475 | 4191 | 3.695830 | AAGTTGAAGCACGGGAATAGA | 57.304 | 42.857 | 0.00 | 0.00 | 0.00 | 1.98 |
3476 | 4192 | 3.751175 | TCAAAGTTGAAGCACGGGAATAG | 59.249 | 43.478 | 0.00 | 0.00 | 33.55 | 1.73 |
3477 | 4193 | 3.500680 | GTCAAAGTTGAAGCACGGGAATA | 59.499 | 43.478 | 0.00 | 0.00 | 39.21 | 1.75 |
3478 | 4194 | 2.293399 | GTCAAAGTTGAAGCACGGGAAT | 59.707 | 45.455 | 0.00 | 0.00 | 39.21 | 3.01 |
3479 | 4195 | 1.673920 | GTCAAAGTTGAAGCACGGGAA | 59.326 | 47.619 | 0.00 | 0.00 | 39.21 | 3.97 |
3480 | 4196 | 1.305201 | GTCAAAGTTGAAGCACGGGA | 58.695 | 50.000 | 0.00 | 0.00 | 39.21 | 5.14 |
3481 | 4197 | 0.310854 | GGTCAAAGTTGAAGCACGGG | 59.689 | 55.000 | 0.00 | 0.00 | 39.21 | 5.28 |
3482 | 4198 | 1.021202 | TGGTCAAAGTTGAAGCACGG | 58.979 | 50.000 | 0.00 | 0.00 | 39.21 | 4.94 |
3483 | 4199 | 4.481930 | TTATGGTCAAAGTTGAAGCACG | 57.518 | 40.909 | 0.00 | 0.00 | 39.21 | 5.34 |
3484 | 4200 | 7.713764 | AAATTTATGGTCAAAGTTGAAGCAC | 57.286 | 32.000 | 0.00 | 0.00 | 39.21 | 4.40 |
3485 | 4201 | 9.255304 | GTTAAATTTATGGTCAAAGTTGAAGCA | 57.745 | 29.630 | 0.00 | 0.00 | 39.21 | 3.91 |
3486 | 4202 | 8.708742 | GGTTAAATTTATGGTCAAAGTTGAAGC | 58.291 | 33.333 | 0.00 | 0.00 | 39.21 | 3.86 |
3487 | 4203 | 9.757227 | TGGTTAAATTTATGGTCAAAGTTGAAG | 57.243 | 29.630 | 0.00 | 0.00 | 39.21 | 3.02 |
3489 | 4205 | 9.535878 | GTTGGTTAAATTTATGGTCAAAGTTGA | 57.464 | 29.630 | 0.00 | 0.00 | 34.20 | 3.18 |
3490 | 4206 | 9.319143 | TGTTGGTTAAATTTATGGTCAAAGTTG | 57.681 | 29.630 | 0.00 | 0.00 | 29.44 | 3.16 |
3491 | 4207 | 9.892130 | TTGTTGGTTAAATTTATGGTCAAAGTT | 57.108 | 25.926 | 0.00 | 0.00 | 31.36 | 2.66 |
3492 | 4208 | 9.541143 | CTTGTTGGTTAAATTTATGGTCAAAGT | 57.459 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
3493 | 4209 | 9.757227 | TCTTGTTGGTTAAATTTATGGTCAAAG | 57.243 | 29.630 | 0.00 | 1.33 | 0.00 | 2.77 |
3494 | 4210 | 9.535878 | GTCTTGTTGGTTAAATTTATGGTCAAA | 57.464 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3495 | 4211 | 8.145122 | GGTCTTGTTGGTTAAATTTATGGTCAA | 58.855 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3496 | 4212 | 7.522399 | CGGTCTTGTTGGTTAAATTTATGGTCA | 60.522 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
3497 | 4213 | 6.804783 | CGGTCTTGTTGGTTAAATTTATGGTC | 59.195 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
3498 | 4214 | 6.490721 | TCGGTCTTGTTGGTTAAATTTATGGT | 59.509 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
3499 | 4215 | 6.804783 | GTCGGTCTTGTTGGTTAAATTTATGG | 59.195 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
3500 | 4216 | 7.537306 | CAGTCGGTCTTGTTGGTTAAATTTATG | 59.463 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
3501 | 4217 | 7.590279 | CAGTCGGTCTTGTTGGTTAAATTTAT | 58.410 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3502 | 4218 | 6.513720 | GCAGTCGGTCTTGTTGGTTAAATTTA | 60.514 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3503 | 4219 | 5.735070 | GCAGTCGGTCTTGTTGGTTAAATTT | 60.735 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3504 | 4220 | 4.261447 | GCAGTCGGTCTTGTTGGTTAAATT | 60.261 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
3505 | 4221 | 3.252458 | GCAGTCGGTCTTGTTGGTTAAAT | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3506 | 4222 | 2.614983 | GCAGTCGGTCTTGTTGGTTAAA | 59.385 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
3507 | 4223 | 2.215196 | GCAGTCGGTCTTGTTGGTTAA | 58.785 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
3508 | 4224 | 1.870580 | CGCAGTCGGTCTTGTTGGTTA | 60.871 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
3509 | 4225 | 1.157870 | CGCAGTCGGTCTTGTTGGTT | 61.158 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3510 | 4226 | 1.594293 | CGCAGTCGGTCTTGTTGGT | 60.594 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
3511 | 4227 | 3.244105 | CGCAGTCGGTCTTGTTGG | 58.756 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
3523 | 4239 | 4.947147 | TTTTGCTCCCGCCGCAGT | 62.947 | 61.111 | 0.00 | 0.00 | 38.80 | 4.40 |
3524 | 4240 | 4.107051 | CTTTTGCTCCCGCCGCAG | 62.107 | 66.667 | 0.00 | 0.00 | 38.80 | 5.18 |
3525 | 4241 | 4.887932 | TATAACTTTTGCTCCCGCCGCA | 62.888 | 50.000 | 0.00 | 0.00 | 35.22 | 5.69 |
3526 | 4242 | 1.654023 | ATAACTTTTGCTCCCGCCGC | 61.654 | 55.000 | 0.00 | 0.00 | 34.43 | 6.53 |
3527 | 4243 | 1.329599 | GTATAACTTTTGCTCCCGCCG | 59.670 | 52.381 | 0.00 | 0.00 | 34.43 | 6.46 |
3528 | 4244 | 1.674441 | GGTATAACTTTTGCTCCCGCC | 59.326 | 52.381 | 0.00 | 0.00 | 34.43 | 6.13 |
3529 | 4245 | 2.354821 | CTGGTATAACTTTTGCTCCCGC | 59.645 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3530 | 4246 | 3.374058 | CACTGGTATAACTTTTGCTCCCG | 59.626 | 47.826 | 0.00 | 0.00 | 0.00 | 5.14 |
3531 | 4247 | 4.585879 | TCACTGGTATAACTTTTGCTCCC | 58.414 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3532 | 4248 | 6.759497 | ATTCACTGGTATAACTTTTGCTCC | 57.241 | 37.500 | 0.00 | 0.00 | 0.00 | 4.70 |
3533 | 4249 | 6.961554 | CGAATTCACTGGTATAACTTTTGCTC | 59.038 | 38.462 | 6.22 | 0.00 | 0.00 | 4.26 |
3534 | 4250 | 6.430000 | ACGAATTCACTGGTATAACTTTTGCT | 59.570 | 34.615 | 6.22 | 0.00 | 0.00 | 3.91 |
3535 | 4251 | 6.608610 | ACGAATTCACTGGTATAACTTTTGC | 58.391 | 36.000 | 6.22 | 0.00 | 0.00 | 3.68 |
3538 | 4254 | 9.661563 | TGAATACGAATTCACTGGTATAACTTT | 57.338 | 29.630 | 6.22 | 0.00 | 45.17 | 2.66 |
3585 | 4301 | 2.908817 | GACTGCGTCGGGAGAAAAA | 58.091 | 52.632 | 0.00 | 0.00 | 42.89 | 1.94 |
3586 | 4302 | 4.667420 | GACTGCGTCGGGAGAAAA | 57.333 | 55.556 | 0.00 | 0.00 | 42.89 | 2.29 |
3595 | 4311 | 2.081212 | CAACGAGACCGACTGCGTC | 61.081 | 63.158 | 0.00 | 0.00 | 39.50 | 5.19 |
3596 | 4312 | 2.050351 | CAACGAGACCGACTGCGT | 60.050 | 61.111 | 0.00 | 0.00 | 39.50 | 5.24 |
3597 | 4313 | 2.805353 | CCAACGAGACCGACTGCG | 60.805 | 66.667 | 0.00 | 0.00 | 39.50 | 5.18 |
3598 | 4314 | 0.038892 | TAACCAACGAGACCGACTGC | 60.039 | 55.000 | 0.00 | 0.00 | 39.50 | 4.40 |
3599 | 4315 | 2.427232 | TTAACCAACGAGACCGACTG | 57.573 | 50.000 | 0.00 | 0.00 | 39.50 | 3.51 |
3600 | 4316 | 3.672767 | ATTTAACCAACGAGACCGACT | 57.327 | 42.857 | 0.00 | 0.00 | 39.50 | 4.18 |
3601 | 4317 | 4.737353 | AAATTTAACCAACGAGACCGAC | 57.263 | 40.909 | 0.00 | 0.00 | 39.50 | 4.79 |
3602 | 4318 | 5.352016 | CCATAAATTTAACCAACGAGACCGA | 59.648 | 40.000 | 1.21 | 0.00 | 39.50 | 4.69 |
3603 | 4319 | 5.122711 | ACCATAAATTTAACCAACGAGACCG | 59.877 | 40.000 | 1.21 | 0.00 | 42.50 | 4.79 |
3604 | 4320 | 6.149807 | TGACCATAAATTTAACCAACGAGACC | 59.850 | 38.462 | 1.21 | 0.00 | 0.00 | 3.85 |
3605 | 4321 | 7.136289 | TGACCATAAATTTAACCAACGAGAC | 57.864 | 36.000 | 1.21 | 0.00 | 0.00 | 3.36 |
3606 | 4322 | 7.747155 | TTGACCATAAATTTAACCAACGAGA | 57.253 | 32.000 | 1.21 | 0.00 | 0.00 | 4.04 |
3607 | 4323 | 8.804688 | TTTTGACCATAAATTTAACCAACGAG | 57.195 | 30.769 | 1.21 | 0.00 | 0.00 | 4.18 |
3608 | 4324 | 9.765795 | AATTTTGACCATAAATTTAACCAACGA | 57.234 | 25.926 | 1.21 | 0.00 | 32.75 | 3.85 |
3609 | 4325 | 9.804547 | CAATTTTGACCATAAATTTAACCAACG | 57.195 | 29.630 | 1.21 | 0.00 | 34.01 | 4.10 |
3612 | 4328 | 9.495572 | GTCCAATTTTGACCATAAATTTAACCA | 57.504 | 29.630 | 1.21 | 0.00 | 34.01 | 3.67 |
3613 | 4329 | 8.941977 | GGTCCAATTTTGACCATAAATTTAACC | 58.058 | 33.333 | 15.86 | 0.00 | 38.76 | 2.85 |
3614 | 4330 | 9.719355 | AGGTCCAATTTTGACCATAAATTTAAC | 57.281 | 29.630 | 20.67 | 0.00 | 41.22 | 2.01 |
3615 | 4331 | 9.936759 | GAGGTCCAATTTTGACCATAAATTTAA | 57.063 | 29.630 | 20.67 | 0.00 | 41.22 | 1.52 |
3616 | 4332 | 8.247562 | CGAGGTCCAATTTTGACCATAAATTTA | 58.752 | 33.333 | 20.67 | 0.00 | 41.22 | 1.40 |
3617 | 4333 | 7.096551 | CGAGGTCCAATTTTGACCATAAATTT | 58.903 | 34.615 | 20.67 | 0.00 | 41.22 | 1.82 |
3618 | 4334 | 6.350949 | CCGAGGTCCAATTTTGACCATAAATT | 60.351 | 38.462 | 20.67 | 4.43 | 41.22 | 1.82 |
3619 | 4335 | 5.127031 | CCGAGGTCCAATTTTGACCATAAAT | 59.873 | 40.000 | 20.67 | 5.00 | 41.22 | 1.40 |
3620 | 4336 | 4.461081 | CCGAGGTCCAATTTTGACCATAAA | 59.539 | 41.667 | 20.67 | 0.00 | 41.22 | 1.40 |
3621 | 4337 | 4.013728 | CCGAGGTCCAATTTTGACCATAA | 58.986 | 43.478 | 20.67 | 0.00 | 41.22 | 1.90 |
3622 | 4338 | 3.616219 | CCGAGGTCCAATTTTGACCATA | 58.384 | 45.455 | 20.67 | 0.00 | 41.22 | 2.74 |
3623 | 4339 | 2.446435 | CCGAGGTCCAATTTTGACCAT | 58.554 | 47.619 | 20.67 | 9.75 | 41.22 | 3.55 |
3624 | 4340 | 1.546773 | CCCGAGGTCCAATTTTGACCA | 60.547 | 52.381 | 20.67 | 0.00 | 41.22 | 4.02 |
3625 | 4341 | 1.173913 | CCCGAGGTCCAATTTTGACC | 58.826 | 55.000 | 13.75 | 13.75 | 39.18 | 4.02 |
3626 | 4342 | 2.194201 | TCCCGAGGTCCAATTTTGAC | 57.806 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3627 | 4343 | 2.790433 | CTTCCCGAGGTCCAATTTTGA | 58.210 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
3628 | 4344 | 1.202348 | GCTTCCCGAGGTCCAATTTTG | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
3629 | 4345 | 1.545841 | GCTTCCCGAGGTCCAATTTT | 58.454 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3630 | 4346 | 0.676782 | CGCTTCCCGAGGTCCAATTT | 60.677 | 55.000 | 0.00 | 0.00 | 40.02 | 1.82 |
3631 | 4347 | 1.078426 | CGCTTCCCGAGGTCCAATT | 60.078 | 57.895 | 0.00 | 0.00 | 40.02 | 2.32 |
3632 | 4348 | 2.584608 | CGCTTCCCGAGGTCCAAT | 59.415 | 61.111 | 0.00 | 0.00 | 40.02 | 3.16 |
3633 | 4349 | 4.388499 | GCGCTTCCCGAGGTCCAA | 62.388 | 66.667 | 0.00 | 0.00 | 40.02 | 3.53 |
3648 | 4364 | 0.384230 | CAAAATATAGTGCGCCCGCG | 60.384 | 55.000 | 4.18 | 4.36 | 45.51 | 6.46 |
3649 | 4365 | 0.040425 | CCAAAATATAGTGCGCCCGC | 60.040 | 55.000 | 4.18 | 5.60 | 42.35 | 6.13 |
3650 | 4366 | 1.588674 | TCCAAAATATAGTGCGCCCG | 58.411 | 50.000 | 4.18 | 0.00 | 0.00 | 6.13 |
3651 | 4367 | 3.305335 | CCATTCCAAAATATAGTGCGCCC | 60.305 | 47.826 | 4.18 | 0.00 | 0.00 | 6.13 |
3652 | 4368 | 3.568007 | TCCATTCCAAAATATAGTGCGCC | 59.432 | 43.478 | 4.18 | 0.00 | 0.00 | 6.53 |
3653 | 4369 | 4.320494 | CCTCCATTCCAAAATATAGTGCGC | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 6.09 |
3654 | 4370 | 4.216257 | CCCTCCATTCCAAAATATAGTGCG | 59.784 | 45.833 | 0.00 | 0.00 | 0.00 | 5.34 |
3655 | 4371 | 5.385198 | TCCCTCCATTCCAAAATATAGTGC | 58.615 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
3656 | 4372 | 6.605119 | ACTCCCTCCATTCCAAAATATAGTG | 58.395 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3657 | 4373 | 6.848562 | ACTCCCTCCATTCCAAAATATAGT | 57.151 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
3658 | 4374 | 9.813826 | ATTTACTCCCTCCATTCCAAAATATAG | 57.186 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
3659 | 4375 | 9.807921 | GATTTACTCCCTCCATTCCAAAATATA | 57.192 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
3660 | 4376 | 8.288812 | TGATTTACTCCCTCCATTCCAAAATAT | 58.711 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3661 | 4377 | 7.647827 | TGATTTACTCCCTCCATTCCAAAATA | 58.352 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3662 | 4378 | 6.502138 | TGATTTACTCCCTCCATTCCAAAAT | 58.498 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3663 | 4379 | 5.898120 | TGATTTACTCCCTCCATTCCAAAA | 58.102 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
3664 | 4380 | 5.528600 | TGATTTACTCCCTCCATTCCAAA | 57.471 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
3665 | 4381 | 5.732331 | ATGATTTACTCCCTCCATTCCAA | 57.268 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
3666 | 4382 | 7.961431 | TCTATATGATTTACTCCCTCCATTCCA | 59.039 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
3667 | 4383 | 8.380742 | TCTATATGATTTACTCCCTCCATTCC | 57.619 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3668 | 4384 | 9.883142 | CTTCTATATGATTTACTCCCTCCATTC | 57.117 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
3669 | 4385 | 9.398921 | ACTTCTATATGATTTACTCCCTCCATT | 57.601 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3670 | 4386 | 8.980832 | ACTTCTATATGATTTACTCCCTCCAT | 57.019 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
3690 | 4406 | 7.450074 | TGTTGTATGGAGTGTTCAATACTTCT | 58.550 | 34.615 | 0.00 | 0.00 | 39.84 | 2.85 |
3757 | 4517 | 9.559732 | AATTGCTATTCTACTATAACATGCACA | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 4.57 |
3781 | 4541 | 6.015180 | ACATGTGTCCAGAATAACAGCAAAAT | 60.015 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
4017 | 4784 | 9.388506 | ACTTAGATGACATTTTCTGTTCCATAG | 57.611 | 33.333 | 0.00 | 0.00 | 38.54 | 2.23 |
4071 | 4847 | 0.593128 | CCACTTTCAGTTTCCGCCAG | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4093 | 4869 | 7.064609 | GTGACTGATTGAGATTACGAATGGAAA | 59.935 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
4102 | 4878 | 6.992063 | ATGTTGGTGACTGATTGAGATTAC | 57.008 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
4103 | 4879 | 7.619965 | TGTATGTTGGTGACTGATTGAGATTA | 58.380 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
4220 | 4997 | 6.601613 | AGAATCAGTTGTGTAAAACTTCACCA | 59.398 | 34.615 | 0.00 | 0.00 | 38.34 | 4.17 |
4488 | 5271 | 4.601406 | TGCATTAACCTATTGACCCCTT | 57.399 | 40.909 | 0.00 | 0.00 | 0.00 | 3.95 |
4543 | 5327 | 3.808728 | ACTGCAAGCACTTAACTCTTCA | 58.191 | 40.909 | 0.00 | 0.00 | 37.60 | 3.02 |
4622 | 5407 | 7.056635 | ACCCAGAATTCACATATACCAAGAAG | 58.943 | 38.462 | 8.44 | 0.00 | 0.00 | 2.85 |
4631 | 5416 | 5.429762 | TCTCCTCAACCCAGAATTCACATAT | 59.570 | 40.000 | 8.44 | 0.00 | 0.00 | 1.78 |
4757 | 5543 | 6.208599 | CCTTCTGAATTAAACCAACTAAGCCA | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
4758 | 5544 | 6.621613 | CCTTCTGAATTAAACCAACTAAGCC | 58.378 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5007 | 5830 | 6.752168 | ACATACCCACGATAATTACACCTAC | 58.248 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5037 | 5860 | 7.621991 | CAAGTCACTTGTTATAGAATAAGCGG | 58.378 | 38.462 | 9.61 | 0.65 | 37.30 | 5.52 |
5104 | 5927 | 5.072600 | TCTCAAACAGGTAGTAACATGGGTT | 59.927 | 40.000 | 0.00 | 0.00 | 41.69 | 4.11 |
5118 | 5941 | 2.805099 | GTGACTGAGCTTCTCAAACAGG | 59.195 | 50.000 | 0.00 | 0.00 | 40.18 | 4.00 |
5139 | 5962 | 0.248215 | GTGCCGCGATCCATTTTCAG | 60.248 | 55.000 | 8.23 | 0.00 | 0.00 | 3.02 |
5153 | 5976 | 5.984233 | TTTTTATGCTCTAGTATGTGCCG | 57.016 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
5295 | 6214 | 3.189495 | TGCACAAACTCAACGAAACTCAA | 59.811 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
5296 | 6215 | 2.744741 | TGCACAAACTCAACGAAACTCA | 59.255 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
5297 | 6216 | 3.098636 | GTGCACAAACTCAACGAAACTC | 58.901 | 45.455 | 13.17 | 0.00 | 0.00 | 3.01 |
5298 | 6217 | 2.747446 | AGTGCACAAACTCAACGAAACT | 59.253 | 40.909 | 21.04 | 0.00 | 0.00 | 2.66 |
5299 | 6218 | 3.131240 | AGTGCACAAACTCAACGAAAC | 57.869 | 42.857 | 21.04 | 0.00 | 0.00 | 2.78 |
5300 | 6219 | 3.840890 | AAGTGCACAAACTCAACGAAA | 57.159 | 38.095 | 21.04 | 0.00 | 0.00 | 3.46 |
5301 | 6220 | 4.948608 | TTAAGTGCACAAACTCAACGAA | 57.051 | 36.364 | 21.04 | 0.00 | 0.00 | 3.85 |
5302 | 6221 | 5.493133 | AATTAAGTGCACAAACTCAACGA | 57.507 | 34.783 | 21.04 | 0.00 | 0.00 | 3.85 |
5303 | 6222 | 7.851822 | ATAAATTAAGTGCACAAACTCAACG | 57.148 | 32.000 | 21.04 | 0.00 | 0.00 | 4.10 |
5545 | 6464 | 0.531532 | ACGGCAGCATCTCATACAGC | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5563 | 6482 | 4.588278 | GTCCAGCGTATTCAATTGCTAAC | 58.412 | 43.478 | 0.00 | 0.00 | 35.56 | 2.34 |
5702 | 6623 | 2.548057 | AGTTTTGACATACTGGCACACG | 59.452 | 45.455 | 0.00 | 0.00 | 33.32 | 4.49 |
5845 | 7864 | 9.177927 | TCTCTTGGGGGTGTAAATATATGTAAT | 57.822 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
5859 | 7878 | 1.956477 | CAGTTGTTTCTCTTGGGGGTG | 59.044 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
5860 | 7879 | 1.754201 | GCAGTTGTTTCTCTTGGGGGT | 60.754 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
6036 | 8055 | 8.359642 | GGAAAATGCAGCTGATATAAATGGTAA | 58.640 | 33.333 | 20.43 | 0.00 | 0.00 | 2.85 |
6144 | 8163 | 4.252073 | CACTCATCTCCTTTGGAAGACTG | 58.748 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
6165 | 8184 | 7.589958 | TTGGGTTAGACTGAAATTTTAAGCA | 57.410 | 32.000 | 9.68 | 0.00 | 0.00 | 3.91 |
6271 | 8290 | 7.753580 | GGAATTGGGACAGTTAAATTTACTTCG | 59.246 | 37.037 | 0.00 | 0.00 | 38.74 | 3.79 |
6275 | 8294 | 9.850628 | GTAAGGAATTGGGACAGTTAAATTTAC | 57.149 | 33.333 | 0.00 | 0.00 | 38.74 | 2.01 |
6343 | 8365 | 2.927429 | TGGAATTTGATGTCGTTTGCG | 58.073 | 42.857 | 0.00 | 0.00 | 39.92 | 4.85 |
6384 | 8406 | 8.540492 | CACTATTATTGACGGTTTATGACACTC | 58.460 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
6427 | 8449 | 7.381678 | CAGCCGTAGTTACTTAGAATGGAATAC | 59.618 | 40.741 | 0.00 | 0.00 | 0.00 | 1.89 |
6467 | 8489 | 7.872138 | AGGTTTTCATGATACCTCAAGGATTA | 58.128 | 34.615 | 19.32 | 0.00 | 37.78 | 1.75 |
6501 | 8523 | 4.062991 | CGTAGTTAAAGTGCAACCTTCCT | 58.937 | 43.478 | 0.00 | 0.00 | 37.80 | 3.36 |
6508 | 8530 | 7.815549 | TGAGTATCATTCGTAGTTAAAGTGCAA | 59.184 | 33.333 | 0.00 | 0.00 | 42.56 | 4.08 |
6530 | 8552 | 1.371558 | GAACGGAGGGTTGCTGAGT | 59.628 | 57.895 | 0.00 | 0.00 | 39.50 | 3.41 |
6545 | 8567 | 4.319177 | AGTGCAGGACTGATTACTTGAAC | 58.681 | 43.478 | 3.00 | 0.00 | 31.75 | 3.18 |
6546 | 8568 | 4.623932 | AGTGCAGGACTGATTACTTGAA | 57.376 | 40.909 | 3.00 | 0.00 | 31.75 | 2.69 |
6602 | 8624 | 5.408204 | TGATACATGCAAATTCTAGTGCG | 57.592 | 39.130 | 0.00 | 0.00 | 43.93 | 5.34 |
6603 | 8625 | 6.789262 | AGTTGATACATGCAAATTCTAGTGC | 58.211 | 36.000 | 0.00 | 0.00 | 41.29 | 4.40 |
6724 | 8748 | 6.862608 | TCGTTCGCAAAAGTATAGTTCACTTA | 59.137 | 34.615 | 0.00 | 0.00 | 35.19 | 2.24 |
6744 | 8768 | 9.872757 | TTCTTCACAAAGTTATGTTTATCGTTC | 57.127 | 29.630 | 0.00 | 0.00 | 33.95 | 3.95 |
6777 | 9143 | 7.707624 | TCCTGTAACTAATTCTTCGGACTTA | 57.292 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6792 | 9158 | 4.339814 | TCGCCAAATTTGTTTCCTGTAACT | 59.660 | 37.500 | 16.73 | 0.00 | 0.00 | 2.24 |
6797 | 9163 | 4.178545 | AGATCGCCAAATTTGTTTCCTG | 57.821 | 40.909 | 16.73 | 1.81 | 0.00 | 3.86 |
6798 | 9164 | 4.871933 | AAGATCGCCAAATTTGTTTCCT | 57.128 | 36.364 | 16.73 | 4.82 | 0.00 | 3.36 |
6895 | 9261 | 1.742761 | ACACATCCTTCCAATCAGCG | 58.257 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
6968 | 9334 | 1.535202 | ATCGGAGAGGGCCCAGATC | 60.535 | 63.158 | 27.56 | 18.23 | 43.63 | 2.75 |
6981 | 9347 | 1.191489 | TGCAACTGGAGGTCATCGGA | 61.191 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
6982 | 9348 | 0.321564 | TTGCAACTGGAGGTCATCGG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
7030 | 9397 | 8.436200 | GTTATGTACATTGTCAGAGTTTGAGAC | 58.564 | 37.037 | 14.77 | 0.00 | 36.21 | 3.36 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.