Multiple sequence alignment - TraesCS7D01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G346800 chr7D 100.000 3389 0 0 1 3389 446351783 446348395 0.000000e+00 6259
1 TraesCS7D01G346800 chr7D 82.764 1346 197 27 6 1338 446431141 446429818 0.000000e+00 1168
2 TraesCS7D01G346800 chr7D 97.113 381 11 0 1529 1909 11711150 11710770 0.000000e+00 643
3 TraesCS7D01G346800 chr7D 86.757 370 37 7 2077 2435 446429720 446429352 5.270000e-108 401
4 TraesCS7D01G346800 chr7D 83.981 206 33 0 2154 2359 446289597 446289392 7.420000e-47 198
5 TraesCS7D01G346800 chr7B 95.822 1532 50 7 1 1527 462864590 462863068 0.000000e+00 2462
6 TraesCS7D01G346800 chr7B 94.542 1484 70 6 1910 3389 462863076 462861600 0.000000e+00 2281
7 TraesCS7D01G346800 chr7B 82.818 1100 158 22 253 1338 463035546 463034464 0.000000e+00 955
8 TraesCS7D01G346800 chr7B 86.216 370 39 8 2077 2435 463034366 463033998 1.140000e-104 390
9 TraesCS7D01G346800 chr7B 83.333 180 26 4 1351 1527 687654081 687654259 2.710000e-36 163
10 TraesCS7D01G346800 chr7A 83.222 1347 186 30 6 1338 497278446 497277126 0.000000e+00 1199
11 TraesCS7D01G346800 chr7A 85.405 370 42 9 2077 2435 497277028 497276660 1.150000e-99 374
12 TraesCS7D01G346800 chr7A 94.203 69 4 0 1938 2006 734542295 734542227 4.620000e-19 106
13 TraesCS7D01G346800 chr6B 81.766 1223 178 22 43 1251 136451092 136449901 0.000000e+00 981
14 TraesCS7D01G346800 chr6B 84.865 370 46 5 2077 2436 136449729 136449360 6.910000e-97 364
15 TraesCS7D01G346800 chr6A 79.939 1301 206 31 54 1338 80515940 80514679 0.000000e+00 905
16 TraesCS7D01G346800 chr6A 84.140 372 45 10 2077 2436 80514581 80514212 6.960000e-92 348
17 TraesCS7D01G346800 chr4D 97.375 381 10 0 1528 1908 319893596 319893976 0.000000e+00 649
18 TraesCS7D01G346800 chr4D 96.899 387 11 1 1531 1916 505257573 505257187 0.000000e+00 647
19 TraesCS7D01G346800 chr4D 97.113 381 11 0 1529 1909 507154123 507153743 0.000000e+00 643
20 TraesCS7D01G346800 chr4D 97.015 67 2 0 1934 2000 4093715 4093781 2.760000e-21 113
21 TraesCS7D01G346800 chr4D 90.667 75 7 0 1934 2008 434731708 434731634 2.150000e-17 100
22 TraesCS7D01G346800 chr2D 97.375 381 10 0 1530 1910 369910063 369910443 0.000000e+00 649
23 TraesCS7D01G346800 chr2D 97.113 381 10 1 1529 1909 72794604 72794225 2.850000e-180 641
24 TraesCS7D01G346800 chr1D 96.891 386 12 0 1525 1910 456272235 456271850 0.000000e+00 647
25 TraesCS7D01G346800 chr3D 95.522 402 16 2 1518 1918 455004884 455004484 2.850000e-180 641
26 TraesCS7D01G346800 chr3D 96.154 390 15 0 1528 1917 605158911 605159300 3.690000e-179 638
27 TraesCS7D01G346800 chr3D 82.873 181 27 4 1350 1527 199216707 199216528 3.500000e-35 159
28 TraesCS7D01G346800 chr1B 84.831 178 23 4 1353 1527 463185645 463185469 3.480000e-40 176
29 TraesCS7D01G346800 chr1B 84.659 176 25 2 1353 1527 463887232 463887058 1.250000e-39 174
30 TraesCS7D01G346800 chr1B 84.270 178 24 4 1353 1527 417178464 417178640 1.620000e-38 171
31 TraesCS7D01G346800 chr1B 91.781 73 6 0 1934 2006 504507992 504507920 5.980000e-18 102
32 TraesCS7D01G346800 chr3B 84.270 178 24 4 1353 1527 583601953 583602129 1.620000e-38 171
33 TraesCS7D01G346800 chr3B 83.708 178 25 4 1353 1527 441121591 441121415 7.520000e-37 165
34 TraesCS7D01G346800 chr3B 93.333 75 5 0 1934 2008 560766078 560766152 9.940000e-21 111
35 TraesCS7D01G346800 chr3B 92.857 70 5 0 1940 2009 139404224 139404155 5.980000e-18 102
36 TraesCS7D01G346800 chr1A 84.000 175 27 1 1353 1527 1300026 1300199 2.090000e-37 167
37 TraesCS7D01G346800 chr1A 92.000 75 6 0 1934 2008 561041559 561041633 4.620000e-19 106
38 TraesCS7D01G346800 chr6D 94.366 71 4 0 1939 2009 104452865 104452795 3.580000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G346800 chr7D 446348395 446351783 3388 True 6259.0 6259 100.0000 1 3389 1 chr7D.!!$R3 3388
1 TraesCS7D01G346800 chr7D 446429352 446431141 1789 True 784.5 1168 84.7605 6 2435 2 chr7D.!!$R4 2429
2 TraesCS7D01G346800 chr7B 462861600 462864590 2990 True 2371.5 2462 95.1820 1 3389 2 chr7B.!!$R1 3388
3 TraesCS7D01G346800 chr7B 463033998 463035546 1548 True 672.5 955 84.5170 253 2435 2 chr7B.!!$R2 2182
4 TraesCS7D01G346800 chr7A 497276660 497278446 1786 True 786.5 1199 84.3135 6 2435 2 chr7A.!!$R2 2429
5 TraesCS7D01G346800 chr6B 136449360 136451092 1732 True 672.5 981 83.3155 43 2436 2 chr6B.!!$R1 2393
6 TraesCS7D01G346800 chr6A 80514212 80515940 1728 True 626.5 905 82.0395 54 2436 2 chr6A.!!$R1 2382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 2.673833 CTACTCACCGGTGTTGTCTTC 58.326 52.381 32.74 0.00 0.0 2.87 F
1528 1546 0.167908 TAAACGAAGGCTTGCATGCG 59.832 50.000 17.36 6.08 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1835 0.238817 TTCGGAACAAAAATCCCGCG 59.761 50.0 0.0 0.0 41.55 6.46 R
3032 3076 0.730265 GGCGTTGATATTTGTCGGCA 59.270 50.0 0.0 0.0 44.21 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.460263 AGTCTTGCACCATGTGAAAACTA 58.540 39.130 0.00 0.00 35.23 2.24
157 158 2.673833 CTACTCACCGGTGTTGTCTTC 58.326 52.381 32.74 0.00 0.00 2.87
395 403 5.816955 AGGAGAGACTAAAAGCTTCAGTT 57.183 39.130 13.29 1.64 0.00 3.16
679 687 5.134202 TCTCGTGCTCATTTAGTTCTTCA 57.866 39.130 0.00 0.00 0.00 3.02
725 733 8.934023 TTTCCCTCAAACTCAAACACTATAAT 57.066 30.769 0.00 0.00 0.00 1.28
834 847 3.126831 CTGTACCATCGAAATCTCTGGC 58.873 50.000 0.34 0.00 31.72 4.85
898 912 7.360575 ACTTACAGTCGCCTACTTTTATTTG 57.639 36.000 0.00 0.00 35.76 2.32
1021 1039 1.177401 GGGTGCAAAGAGGATTGGAC 58.823 55.000 3.46 3.46 46.96 4.02
1062 1080 0.804989 GATGTTGTCCCTCGCAAAGG 59.195 55.000 0.00 0.00 45.77 3.11
1093 1111 1.404391 CAAGAGAATGTGAGCCCATGC 59.596 52.381 0.00 0.00 37.95 4.06
1370 1388 5.559148 ATTTAGGCTGGTCATAAGGAGAG 57.441 43.478 0.00 0.00 0.00 3.20
1397 1415 7.553881 ACATAGCAAGTAACATAACACATCC 57.446 36.000 0.00 0.00 0.00 3.51
1413 1431 4.101430 ACACATCCCAAGACAATTTTGCTT 59.899 37.500 0.00 0.00 0.00 3.91
1414 1432 5.304101 ACACATCCCAAGACAATTTTGCTTA 59.696 36.000 0.00 0.00 0.00 3.09
1415 1433 6.014327 ACACATCCCAAGACAATTTTGCTTAT 60.014 34.615 0.00 0.00 0.00 1.73
1416 1434 6.311935 CACATCCCAAGACAATTTTGCTTATG 59.688 38.462 0.00 0.00 0.00 1.90
1486 1504 1.741145 GTAACATACCGCACCCCAAAG 59.259 52.381 0.00 0.00 0.00 2.77
1527 1545 2.566952 ATAAACGAAGGCTTGCATGC 57.433 45.000 15.87 15.87 0.00 4.06
1528 1546 0.167908 TAAACGAAGGCTTGCATGCG 59.832 50.000 17.36 6.08 0.00 4.73
1529 1547 2.476534 AAACGAAGGCTTGCATGCGG 62.477 55.000 17.36 9.64 0.00 5.69
1530 1548 3.126879 CGAAGGCTTGCATGCGGA 61.127 61.111 17.36 3.08 0.00 5.54
1531 1549 2.475466 CGAAGGCTTGCATGCGGAT 61.475 57.895 17.36 6.77 0.00 4.18
1532 1550 1.159713 CGAAGGCTTGCATGCGGATA 61.160 55.000 17.36 0.00 0.00 2.59
1533 1551 1.242076 GAAGGCTTGCATGCGGATAT 58.758 50.000 17.36 0.00 0.00 1.63
1534 1552 1.610522 GAAGGCTTGCATGCGGATATT 59.389 47.619 17.36 5.07 0.00 1.28
1535 1553 1.242076 AGGCTTGCATGCGGATATTC 58.758 50.000 17.36 2.97 0.00 1.75
1536 1554 0.242017 GGCTTGCATGCGGATATTCC 59.758 55.000 17.36 3.35 0.00 3.01
1537 1555 0.242017 GCTTGCATGCGGATATTCCC 59.758 55.000 14.09 0.00 31.13 3.97
1538 1556 1.901591 CTTGCATGCGGATATTCCCT 58.098 50.000 14.09 0.00 31.13 4.20
1539 1557 2.233271 CTTGCATGCGGATATTCCCTT 58.767 47.619 14.09 0.00 31.13 3.95
1540 1558 2.363306 TGCATGCGGATATTCCCTTT 57.637 45.000 14.09 0.00 31.13 3.11
1541 1559 2.665165 TGCATGCGGATATTCCCTTTT 58.335 42.857 14.09 0.00 31.13 2.27
1542 1560 2.361757 TGCATGCGGATATTCCCTTTTG 59.638 45.455 14.09 0.00 31.13 2.44
1543 1561 2.863704 GCATGCGGATATTCCCTTTTGC 60.864 50.000 0.00 0.00 31.13 3.68
1544 1562 2.435372 TGCGGATATTCCCTTTTGCT 57.565 45.000 0.00 0.00 31.13 3.91
1545 1563 2.297701 TGCGGATATTCCCTTTTGCTC 58.702 47.619 0.00 0.00 31.13 4.26
1546 1564 1.609072 GCGGATATTCCCTTTTGCTCC 59.391 52.381 0.00 0.00 31.13 4.70
1547 1565 2.749800 GCGGATATTCCCTTTTGCTCCT 60.750 50.000 0.00 0.00 31.13 3.69
1548 1566 3.496160 GCGGATATTCCCTTTTGCTCCTA 60.496 47.826 0.00 0.00 31.13 2.94
1549 1567 4.065789 CGGATATTCCCTTTTGCTCCTAC 58.934 47.826 0.00 0.00 31.13 3.18
1550 1568 4.065789 GGATATTCCCTTTTGCTCCTACG 58.934 47.826 0.00 0.00 0.00 3.51
1551 1569 4.444449 GGATATTCCCTTTTGCTCCTACGT 60.444 45.833 0.00 0.00 0.00 3.57
1552 1570 2.178912 TTCCCTTTTGCTCCTACGTG 57.821 50.000 0.00 0.00 0.00 4.49
1553 1571 0.321298 TCCCTTTTGCTCCTACGTGC 60.321 55.000 0.00 0.00 0.00 5.34
1554 1572 0.605319 CCCTTTTGCTCCTACGTGCA 60.605 55.000 0.00 0.00 36.73 4.57
1555 1573 1.453155 CCTTTTGCTCCTACGTGCAT 58.547 50.000 0.00 0.00 38.24 3.96
1556 1574 2.627945 CCTTTTGCTCCTACGTGCATA 58.372 47.619 0.00 0.00 38.24 3.14
1557 1575 3.206150 CCTTTTGCTCCTACGTGCATAT 58.794 45.455 0.00 0.00 38.24 1.78
1558 1576 3.002656 CCTTTTGCTCCTACGTGCATATG 59.997 47.826 0.00 0.00 38.24 1.78
1559 1577 1.581934 TTGCTCCTACGTGCATATGC 58.418 50.000 21.09 21.09 38.24 3.14
1570 1588 3.851620 GCATATGCACCCATTGTCG 57.148 52.632 22.84 0.00 41.59 4.35
1571 1589 1.308047 GCATATGCACCCATTGTCGA 58.692 50.000 22.84 0.00 41.59 4.20
1572 1590 1.675483 GCATATGCACCCATTGTCGAA 59.325 47.619 22.84 0.00 41.59 3.71
1573 1591 2.098934 GCATATGCACCCATTGTCGAAA 59.901 45.455 22.84 0.00 41.59 3.46
1574 1592 3.243501 GCATATGCACCCATTGTCGAAAT 60.244 43.478 22.84 0.00 41.59 2.17
1575 1593 4.023279 GCATATGCACCCATTGTCGAAATA 60.023 41.667 22.84 0.00 41.59 1.40
1576 1594 5.451908 CATATGCACCCATTGTCGAAATAC 58.548 41.667 0.00 0.00 32.85 1.89
1577 1595 2.784347 TGCACCCATTGTCGAAATACA 58.216 42.857 0.00 0.00 0.00 2.29
1578 1596 2.486203 TGCACCCATTGTCGAAATACAC 59.514 45.455 0.00 0.00 0.00 2.90
1579 1597 2.486203 GCACCCATTGTCGAAATACACA 59.514 45.455 0.00 0.00 0.00 3.72
1580 1598 3.128589 GCACCCATTGTCGAAATACACAT 59.871 43.478 0.00 0.00 0.00 3.21
1581 1599 4.380444 GCACCCATTGTCGAAATACACATT 60.380 41.667 0.00 0.00 0.00 2.71
1582 1600 5.708948 CACCCATTGTCGAAATACACATTT 58.291 37.500 0.00 0.00 37.06 2.32
1583 1601 5.799936 CACCCATTGTCGAAATACACATTTC 59.200 40.000 0.00 0.92 44.44 2.17
1595 1613 8.555166 GAAATACACATTTCGAAAAGTTGACA 57.445 30.769 15.58 7.02 40.40 3.58
1596 1614 8.918961 AAATACACATTTCGAAAAGTTGACAA 57.081 26.923 15.58 1.57 27.60 3.18
1597 1615 8.918961 AATACACATTTCGAAAAGTTGACAAA 57.081 26.923 15.58 0.19 0.00 2.83
1598 1616 9.528018 AATACACATTTCGAAAAGTTGACAAAT 57.472 25.926 15.58 2.29 0.00 2.32
1599 1617 7.826260 ACACATTTCGAAAAGTTGACAAATT 57.174 28.000 15.58 0.00 0.00 1.82
1600 1618 7.894847 ACACATTTCGAAAAGTTGACAAATTC 58.105 30.769 15.58 1.16 0.00 2.17
1601 1619 7.050811 CACATTTCGAAAAGTTGACAAATTCG 58.949 34.615 15.58 18.57 42.97 3.34
1602 1620 6.198216 ACATTTCGAAAAGTTGACAAATTCGG 59.802 34.615 15.66 13.44 42.16 4.30
1603 1621 5.487153 TTCGAAAAGTTGACAAATTCGGA 57.513 34.783 21.75 15.61 42.16 4.55
1604 1622 5.487153 TCGAAAAGTTGACAAATTCGGAA 57.513 34.783 21.75 0.00 42.16 4.30
1605 1623 5.267776 TCGAAAAGTTGACAAATTCGGAAC 58.732 37.500 21.75 6.32 42.16 3.62
1606 1624 5.031578 CGAAAAGTTGACAAATTCGGAACA 58.968 37.500 17.58 0.00 39.21 3.18
1607 1625 5.513495 CGAAAAGTTGACAAATTCGGAACAA 59.487 36.000 17.58 0.00 39.21 2.83
1608 1626 6.034044 CGAAAAGTTGACAAATTCGGAACAAA 59.966 34.615 17.58 0.00 39.21 2.83
1609 1627 7.410942 CGAAAAGTTGACAAATTCGGAACAAAA 60.411 33.333 17.58 0.00 39.21 2.44
1610 1628 7.659652 AAAGTTGACAAATTCGGAACAAAAA 57.340 28.000 0.71 0.00 0.00 1.94
1611 1629 6.641176 AGTTGACAAATTCGGAACAAAAAC 57.359 33.333 0.00 0.00 0.00 2.43
1612 1630 5.579119 AGTTGACAAATTCGGAACAAAAACC 59.421 36.000 0.00 0.00 0.00 3.27
1613 1631 4.434520 TGACAAATTCGGAACAAAAACCC 58.565 39.130 0.00 0.00 0.00 4.11
1614 1632 3.799366 ACAAATTCGGAACAAAAACCCC 58.201 40.909 0.00 0.00 0.00 4.95
1615 1633 2.797719 CAAATTCGGAACAAAAACCCCG 59.202 45.455 0.00 0.00 43.02 5.73
1616 1634 0.315886 ATTCGGAACAAAAACCCCGC 59.684 50.000 0.00 0.00 41.55 6.13
1617 1635 2.050805 CGGAACAAAAACCCCGCG 60.051 61.111 0.00 0.00 35.29 6.46
1618 1636 2.836793 CGGAACAAAAACCCCGCGT 61.837 57.895 4.92 0.00 35.29 6.01
1619 1637 1.299544 GGAACAAAAACCCCGCGTG 60.300 57.895 4.92 0.00 0.00 5.34
1620 1638 1.434287 GAACAAAAACCCCGCGTGT 59.566 52.632 4.92 0.00 0.00 4.49
1621 1639 0.662085 GAACAAAAACCCCGCGTGTA 59.338 50.000 4.92 0.00 0.00 2.90
1622 1640 1.267533 GAACAAAAACCCCGCGTGTAT 59.732 47.619 4.92 0.00 0.00 2.29
1623 1641 2.181954 ACAAAAACCCCGCGTGTATA 57.818 45.000 4.92 0.00 0.00 1.47
1624 1642 2.713877 ACAAAAACCCCGCGTGTATAT 58.286 42.857 4.92 0.00 0.00 0.86
1625 1643 2.679336 ACAAAAACCCCGCGTGTATATC 59.321 45.455 4.92 0.00 0.00 1.63
1626 1644 1.957668 AAAACCCCGCGTGTATATCC 58.042 50.000 4.92 0.00 0.00 2.59
1627 1645 0.249573 AAACCCCGCGTGTATATCCG 60.250 55.000 4.92 0.00 0.00 4.18
1628 1646 2.091102 AACCCCGCGTGTATATCCGG 62.091 60.000 4.92 0.00 40.39 5.14
1629 1647 2.270257 CCCCGCGTGTATATCCGGA 61.270 63.158 6.61 6.61 43.20 5.14
1630 1648 1.080974 CCCGCGTGTATATCCGGAC 60.081 63.158 6.12 0.00 43.20 4.79
1631 1649 1.655885 CCGCGTGTATATCCGGACA 59.344 57.895 6.12 0.00 43.20 4.02
1632 1650 0.242825 CCGCGTGTATATCCGGACAT 59.757 55.000 6.12 2.01 43.20 3.06
1633 1651 1.336517 CCGCGTGTATATCCGGACATT 60.337 52.381 6.12 0.00 43.20 2.71
1634 1652 2.400399 CGCGTGTATATCCGGACATTT 58.600 47.619 6.12 0.00 0.00 2.32
1635 1653 2.798283 CGCGTGTATATCCGGACATTTT 59.202 45.455 6.12 0.00 0.00 1.82
1636 1654 3.982701 CGCGTGTATATCCGGACATTTTA 59.017 43.478 6.12 0.00 0.00 1.52
1637 1655 4.624024 CGCGTGTATATCCGGACATTTTAT 59.376 41.667 6.12 2.53 0.00 1.40
1638 1656 5.444087 CGCGTGTATATCCGGACATTTTATG 60.444 44.000 6.12 0.00 0.00 1.90
1652 1670 6.959639 ACATTTTATGTCTGTTCACAAGGT 57.040 33.333 0.00 0.00 39.92 3.50
1653 1671 7.346751 ACATTTTATGTCTGTTCACAAGGTT 57.653 32.000 0.00 0.00 39.92 3.50
1654 1672 7.781056 ACATTTTATGTCTGTTCACAAGGTTT 58.219 30.769 0.00 0.00 39.92 3.27
1655 1673 7.920682 ACATTTTATGTCTGTTCACAAGGTTTC 59.079 33.333 0.00 0.00 39.92 2.78
1656 1674 5.666969 TTATGTCTGTTCACAAGGTTTCG 57.333 39.130 0.00 0.00 0.00 3.46
1657 1675 2.285083 TGTCTGTTCACAAGGTTTCGG 58.715 47.619 0.00 0.00 0.00 4.30
1658 1676 2.285977 GTCTGTTCACAAGGTTTCGGT 58.714 47.619 0.00 0.00 0.00 4.69
1659 1677 2.031683 GTCTGTTCACAAGGTTTCGGTG 59.968 50.000 0.00 0.00 0.00 4.94
1660 1678 2.093394 TCTGTTCACAAGGTTTCGGTGA 60.093 45.455 0.00 0.00 39.60 4.02
1661 1679 2.680841 CTGTTCACAAGGTTTCGGTGAA 59.319 45.455 0.00 0.00 46.09 3.18
1664 1682 4.785511 TTCACAAGGTTTCGGTGAAAAA 57.214 36.364 4.15 0.00 45.51 1.94
1665 1683 4.099380 TCACAAGGTTTCGGTGAAAAAC 57.901 40.909 0.00 0.00 38.50 2.43
1666 1684 2.849473 CACAAGGTTTCGGTGAAAAACG 59.151 45.455 0.00 0.00 37.46 3.60
1667 1685 2.748532 ACAAGGTTTCGGTGAAAAACGA 59.251 40.909 0.00 0.00 37.46 3.85
1668 1686 3.103007 CAAGGTTTCGGTGAAAAACGAC 58.897 45.455 0.00 0.00 39.04 4.34
1669 1687 1.328374 AGGTTTCGGTGAAAAACGACG 59.672 47.619 0.00 0.00 39.04 5.12
1670 1688 1.062440 GGTTTCGGTGAAAAACGACGT 59.938 47.619 0.00 0.00 39.04 4.34
1671 1689 2.476018 GGTTTCGGTGAAAAACGACGTT 60.476 45.455 7.57 7.57 39.04 3.99
1672 1690 3.162831 GTTTCGGTGAAAAACGACGTTT 58.837 40.909 19.83 19.83 39.04 3.60
1673 1691 3.468304 TTCGGTGAAAAACGACGTTTT 57.532 38.095 28.19 28.19 45.94 2.43
1713 1731 8.897872 AAAAAGACAATTTCTGATGCTTCATT 57.102 26.923 2.33 0.00 33.46 2.57
1714 1732 8.530269 AAAAGACAATTTCTGATGCTTCATTC 57.470 30.769 2.33 0.00 33.46 2.67
1715 1733 7.463961 AAGACAATTTCTGATGCTTCATTCT 57.536 32.000 2.33 0.00 33.46 2.40
1716 1734 8.571461 AAGACAATTTCTGATGCTTCATTCTA 57.429 30.769 2.33 0.00 33.46 2.10
1717 1735 8.571461 AGACAATTTCTGATGCTTCATTCTAA 57.429 30.769 2.33 0.00 31.12 2.10
1718 1736 8.457261 AGACAATTTCTGATGCTTCATTCTAAC 58.543 33.333 2.33 0.00 31.12 2.34
1719 1737 8.345724 ACAATTTCTGATGCTTCATTCTAACT 57.654 30.769 2.33 0.00 0.00 2.24
1720 1738 9.453572 ACAATTTCTGATGCTTCATTCTAACTA 57.546 29.630 2.33 0.00 0.00 2.24
1724 1742 9.671279 TTTCTGATGCTTCATTCTAACTATTCA 57.329 29.630 2.33 0.00 0.00 2.57
1725 1743 8.654230 TCTGATGCTTCATTCTAACTATTCAC 57.346 34.615 2.33 0.00 0.00 3.18
1726 1744 7.436376 TCTGATGCTTCATTCTAACTATTCACG 59.564 37.037 2.33 0.00 0.00 4.35
1727 1745 7.264947 TGATGCTTCATTCTAACTATTCACGA 58.735 34.615 0.00 0.00 0.00 4.35
1728 1746 7.928167 TGATGCTTCATTCTAACTATTCACGAT 59.072 33.333 0.00 0.00 0.00 3.73
1729 1747 7.468922 TGCTTCATTCTAACTATTCACGATG 57.531 36.000 0.00 0.00 0.00 3.84
1730 1748 6.018751 TGCTTCATTCTAACTATTCACGATGC 60.019 38.462 0.00 0.00 0.00 3.91
1731 1749 6.018751 GCTTCATTCTAACTATTCACGATGCA 60.019 38.462 0.00 0.00 0.00 3.96
1732 1750 7.307632 GCTTCATTCTAACTATTCACGATGCAT 60.308 37.037 0.00 0.00 0.00 3.96
1733 1751 8.437360 TTCATTCTAACTATTCACGATGCATT 57.563 30.769 0.00 0.00 0.00 3.56
1734 1752 8.437360 TCATTCTAACTATTCACGATGCATTT 57.563 30.769 0.00 0.00 0.00 2.32
1735 1753 8.551205 TCATTCTAACTATTCACGATGCATTTC 58.449 33.333 0.00 0.00 0.00 2.17
1736 1754 8.554528 CATTCTAACTATTCACGATGCATTTCT 58.445 33.333 0.00 0.00 0.00 2.52
1737 1755 8.492673 TTCTAACTATTCACGATGCATTTCTT 57.507 30.769 0.00 0.00 0.00 2.52
1738 1756 8.492673 TCTAACTATTCACGATGCATTTCTTT 57.507 30.769 0.00 0.00 0.00 2.52
1739 1757 9.594478 TCTAACTATTCACGATGCATTTCTTTA 57.406 29.630 0.00 0.00 0.00 1.85
1742 1760 8.668510 ACTATTCACGATGCATTTCTTTATCT 57.331 30.769 0.00 0.00 0.00 1.98
1743 1761 9.113838 ACTATTCACGATGCATTTCTTTATCTT 57.886 29.630 0.00 0.00 0.00 2.40
1744 1762 9.941664 CTATTCACGATGCATTTCTTTATCTTT 57.058 29.630 0.00 0.00 0.00 2.52
1746 1764 9.643693 ATTCACGATGCATTTCTTTATCTTTTT 57.356 25.926 0.00 0.00 0.00 1.94
1781 1799 3.468304 AAAACGTCGTTTTTCACCGAA 57.532 38.095 26.23 0.00 42.11 4.30
1782 1800 3.468304 AAACGTCGTTTTTCACCGAAA 57.532 38.095 17.41 0.00 31.10 3.46
1783 1801 2.440560 ACGTCGTTTTTCACCGAAAC 57.559 45.000 0.00 0.00 34.47 2.78
1784 1802 1.731160 ACGTCGTTTTTCACCGAAACA 59.269 42.857 0.00 0.00 36.94 2.83
1785 1803 2.352342 ACGTCGTTTTTCACCGAAACAT 59.648 40.909 0.00 0.00 36.94 2.71
1786 1804 3.181508 ACGTCGTTTTTCACCGAAACATT 60.182 39.130 0.00 0.00 36.94 2.71
1787 1805 4.033817 ACGTCGTTTTTCACCGAAACATTA 59.966 37.500 0.00 0.00 36.94 1.90
1788 1806 5.141568 CGTCGTTTTTCACCGAAACATTAT 58.858 37.500 0.00 0.00 36.94 1.28
1789 1807 5.057526 CGTCGTTTTTCACCGAAACATTATG 59.942 40.000 0.00 0.00 36.94 1.90
1790 1808 6.137415 GTCGTTTTTCACCGAAACATTATGA 58.863 36.000 0.00 0.00 36.94 2.15
1791 1809 6.633634 GTCGTTTTTCACCGAAACATTATGAA 59.366 34.615 0.00 0.00 36.94 2.57
1792 1810 6.633634 TCGTTTTTCACCGAAACATTATGAAC 59.366 34.615 0.00 0.00 36.94 3.18
1793 1811 6.397069 CGTTTTTCACCGAAACATTATGAACG 60.397 38.462 0.00 1.74 36.94 3.95
1794 1812 4.671880 TTCACCGAAACATTATGAACGG 57.328 40.909 19.70 19.70 44.77 4.44
1795 1813 3.927854 TCACCGAAACATTATGAACGGA 58.072 40.909 24.58 9.83 42.40 4.69
1796 1814 3.680937 TCACCGAAACATTATGAACGGAC 59.319 43.478 24.58 3.06 42.40 4.79
1797 1815 3.433957 CACCGAAACATTATGAACGGACA 59.566 43.478 24.58 0.00 42.40 4.02
1798 1816 4.094294 CACCGAAACATTATGAACGGACAT 59.906 41.667 24.58 9.34 42.40 3.06
1799 1817 5.292345 CACCGAAACATTATGAACGGACATA 59.708 40.000 24.58 0.00 42.40 2.29
1800 1818 5.875910 ACCGAAACATTATGAACGGACATAA 59.124 36.000 24.58 15.17 43.64 1.90
1801 1819 6.372103 ACCGAAACATTATGAACGGACATAAA 59.628 34.615 24.58 5.24 43.05 1.40
1802 1820 7.094720 ACCGAAACATTATGAACGGACATAAAA 60.095 33.333 24.58 2.58 43.05 1.52
1803 1821 7.913297 CCGAAACATTATGAACGGACATAAAAT 59.087 33.333 17.83 8.19 43.05 1.82
1804 1822 9.923786 CGAAACATTATGAACGGACATAAAATA 57.076 29.630 16.23 0.33 43.05 1.40
1818 1836 8.348983 GGACATAAAATATCCGGATATACACG 57.651 38.462 32.23 22.10 33.86 4.49
1819 1837 7.042925 GGACATAAAATATCCGGATATACACGC 60.043 40.741 32.23 19.16 33.86 5.34
1820 1838 6.474427 ACATAAAATATCCGGATATACACGCG 59.526 38.462 32.23 21.68 33.86 6.01
1821 1839 3.431922 AATATCCGGATATACACGCGG 57.568 47.619 32.23 1.27 33.86 6.46
1822 1840 1.097232 TATCCGGATATACACGCGGG 58.903 55.000 20.49 6.92 0.00 6.13
1823 1841 0.609957 ATCCGGATATACACGCGGGA 60.610 55.000 19.19 6.35 35.83 5.14
1824 1842 0.609957 TCCGGATATACACGCGGGAT 60.610 55.000 19.19 6.43 0.00 3.85
1825 1843 0.245539 CCGGATATACACGCGGGATT 59.754 55.000 19.19 3.73 0.00 3.01
1826 1844 1.337447 CCGGATATACACGCGGGATTT 60.337 52.381 19.19 0.61 0.00 2.17
1827 1845 2.409975 CGGATATACACGCGGGATTTT 58.590 47.619 19.19 0.00 0.00 1.82
1828 1846 2.803956 CGGATATACACGCGGGATTTTT 59.196 45.455 19.19 0.00 0.00 1.94
1829 1847 3.363575 CGGATATACACGCGGGATTTTTG 60.364 47.826 19.19 1.15 0.00 2.44
1830 1848 3.562557 GGATATACACGCGGGATTTTTGT 59.437 43.478 19.19 8.67 0.00 2.83
1831 1849 4.035909 GGATATACACGCGGGATTTTTGTT 59.964 41.667 19.19 0.00 0.00 2.83
1832 1850 2.973419 TACACGCGGGATTTTTGTTC 57.027 45.000 19.19 0.00 0.00 3.18
1833 1851 0.312729 ACACGCGGGATTTTTGTTCC 59.687 50.000 19.19 0.00 0.00 3.62
1834 1852 0.727793 CACGCGGGATTTTTGTTCCG 60.728 55.000 12.47 0.00 44.70 4.30
1835 1853 0.885596 ACGCGGGATTTTTGTTCCGA 60.886 50.000 12.47 0.00 44.69 4.55
1836 1854 0.238817 CGCGGGATTTTTGTTCCGAA 59.761 50.000 0.00 0.00 44.69 4.30
1837 1855 1.135517 CGCGGGATTTTTGTTCCGAAT 60.136 47.619 0.00 0.00 44.69 3.34
1838 1856 2.669950 CGCGGGATTTTTGTTCCGAATT 60.670 45.455 0.00 0.00 44.69 2.17
1839 1857 3.322369 GCGGGATTTTTGTTCCGAATTT 58.678 40.909 4.71 0.00 44.69 1.82
1840 1858 3.743911 GCGGGATTTTTGTTCCGAATTTT 59.256 39.130 4.71 0.00 44.69 1.82
1841 1859 4.212425 GCGGGATTTTTGTTCCGAATTTTT 59.788 37.500 4.71 0.00 44.69 1.94
1842 1860 5.613795 GCGGGATTTTTGTTCCGAATTTTTC 60.614 40.000 4.71 0.00 44.69 2.29
1843 1861 5.463724 CGGGATTTTTGTTCCGAATTTTTCA 59.536 36.000 0.00 0.00 44.69 2.69
1844 1862 6.018669 CGGGATTTTTGTTCCGAATTTTTCAA 60.019 34.615 0.00 0.00 44.69 2.69
1845 1863 7.129622 GGGATTTTTGTTCCGAATTTTTCAAC 58.870 34.615 0.00 0.00 33.82 3.18
1846 1864 7.011950 GGGATTTTTGTTCCGAATTTTTCAACT 59.988 33.333 0.00 0.00 33.82 3.16
1847 1865 8.394877 GGATTTTTGTTCCGAATTTTTCAACTT 58.605 29.630 0.00 0.00 0.00 2.66
1848 1866 9.767684 GATTTTTGTTCCGAATTTTTCAACTTT 57.232 25.926 0.00 0.00 0.00 2.66
1850 1868 9.600646 TTTTTGTTCCGAATTTTTCAACTTTTC 57.399 25.926 0.00 0.00 0.00 2.29
1851 1869 7.891183 TTGTTCCGAATTTTTCAACTTTTCA 57.109 28.000 0.00 0.00 0.00 2.69
1852 1870 7.891183 TGTTCCGAATTTTTCAACTTTTCAA 57.109 28.000 0.00 0.00 0.00 2.69
1853 1871 8.311650 TGTTCCGAATTTTTCAACTTTTCAAA 57.688 26.923 0.00 0.00 0.00 2.69
1854 1872 8.774586 TGTTCCGAATTTTTCAACTTTTCAAAA 58.225 25.926 0.00 0.00 0.00 2.44
1855 1873 9.767684 GTTCCGAATTTTTCAACTTTTCAAAAT 57.232 25.926 0.00 0.00 31.57 1.82
1866 1884 8.925788 TCAACTTTTCAAAATTTGTGTTTTCG 57.074 26.923 11.50 0.00 0.00 3.46
1867 1885 8.765219 TCAACTTTTCAAAATTTGTGTTTTCGA 58.235 25.926 11.50 0.00 0.00 3.71
1868 1886 8.826658 CAACTTTTCAAAATTTGTGTTTTCGAC 58.173 29.630 5.56 0.00 0.00 4.20
1869 1887 8.077836 ACTTTTCAAAATTTGTGTTTTCGACA 57.922 26.923 5.56 0.00 35.42 4.35
1870 1888 8.552034 ACTTTTCAAAATTTGTGTTTTCGACAA 58.448 25.926 5.56 0.00 40.65 3.18
1871 1889 9.540431 CTTTTCAAAATTTGTGTTTTCGACAAT 57.460 25.926 5.56 0.00 40.65 2.71
1872 1890 8.871742 TTTCAAAATTTGTGTTTTCGACAATG 57.128 26.923 5.56 0.00 40.65 2.82
1873 1891 6.998338 TCAAAATTTGTGTTTTCGACAATGG 58.002 32.000 5.56 0.00 40.65 3.16
1874 1892 5.982465 AAATTTGTGTTTTCGACAATGGG 57.018 34.783 0.00 0.00 40.65 4.00
1875 1893 4.664150 ATTTGTGTTTTCGACAATGGGT 57.336 36.364 0.00 0.00 40.65 4.51
1876 1894 3.428746 TTGTGTTTTCGACAATGGGTG 57.571 42.857 0.00 0.00 40.65 4.61
1877 1895 1.066303 TGTGTTTTCGACAATGGGTGC 59.934 47.619 0.00 0.00 40.65 5.01
1878 1896 1.066303 GTGTTTTCGACAATGGGTGCA 59.934 47.619 0.00 0.00 40.65 4.57
1879 1897 1.959985 TGTTTTCGACAATGGGTGCAT 59.040 42.857 0.00 0.00 34.69 3.96
1880 1898 3.057876 GTGTTTTCGACAATGGGTGCATA 60.058 43.478 0.00 0.00 40.65 3.14
1881 1899 3.761218 TGTTTTCGACAATGGGTGCATAT 59.239 39.130 0.00 0.00 34.69 1.78
1882 1900 4.104776 GTTTTCGACAATGGGTGCATATG 58.895 43.478 0.00 0.00 0.00 1.78
1883 1901 1.308047 TCGACAATGGGTGCATATGC 58.692 50.000 21.09 21.09 42.50 3.14
1895 1913 2.260844 GCATATGCACCTAGGAGCAA 57.739 50.000 33.23 22.94 44.05 3.91
1896 1914 2.575532 GCATATGCACCTAGGAGCAAA 58.424 47.619 33.23 15.09 44.05 3.68
1897 1915 2.951642 GCATATGCACCTAGGAGCAAAA 59.048 45.455 33.23 24.84 44.05 2.44
1898 1916 3.381272 GCATATGCACCTAGGAGCAAAAA 59.619 43.478 33.23 22.64 44.05 1.94
1912 1930 3.284449 AAAAAGCCGCGTCCGCTT 61.284 55.556 14.19 14.19 39.32 4.68
1913 1931 3.536498 AAAAAGCCGCGTCCGCTTG 62.536 57.895 19.41 2.12 39.32 4.01
1931 1949 4.551410 CGCTTGCATGTCACTACACATATG 60.551 45.833 0.00 0.00 38.78 1.78
2129 2164 7.986085 AGGAATATGTGACTTTATATGGTGC 57.014 36.000 0.00 0.00 0.00 5.01
2421 2465 2.359214 TCACTCTCTATGGTCGCATGAC 59.641 50.000 0.00 0.00 44.72 3.06
2440 2484 8.853345 CGCATGACCAAATATTATTAGATTTGC 58.147 33.333 6.34 0.00 40.14 3.68
2460 2504 7.650834 TTTGCACTATGAAATTTGTAAAGGC 57.349 32.000 0.00 0.00 0.00 4.35
2465 2509 7.601856 CACTATGAAATTTGTAAAGGCTGGAA 58.398 34.615 0.00 0.00 0.00 3.53
2512 2556 0.749649 AAAGTTTGCATGCCGTCCAA 59.250 45.000 16.68 0.00 0.00 3.53
2532 2576 2.828661 AATGGGAAAACCCTAGAGGC 57.171 50.000 6.85 0.00 40.58 4.70
2584 2628 3.063510 AGAACAGACATGATGTGGTGG 57.936 47.619 1.23 0.00 0.00 4.61
2617 2661 1.890041 TTTGTGCCAAGACGTCCGG 60.890 57.895 13.01 14.55 0.00 5.14
2720 2764 1.341209 GCAAGCTTTTAGCACTGGGTT 59.659 47.619 0.00 0.00 45.56 4.11
2773 2817 2.985957 AGCATGTGCACCAAAGTTTT 57.014 40.000 15.69 0.00 45.16 2.43
2774 2818 3.264998 AGCATGTGCACCAAAGTTTTT 57.735 38.095 15.69 0.00 45.16 1.94
2775 2819 2.937799 AGCATGTGCACCAAAGTTTTTG 59.062 40.909 15.69 0.00 45.16 2.44
2780 2824 3.129462 TGTGCACCAAAGTTTTTGATCGA 59.871 39.130 15.69 0.00 0.00 3.59
2796 2840 6.450845 TTGATCGATTGCAAATTTGTTGTC 57.549 33.333 19.03 12.67 0.00 3.18
2799 2843 4.047822 TCGATTGCAAATTTGTTGTCCAC 58.952 39.130 19.03 1.78 0.00 4.02
2823 2867 4.065789 GGAAGTGGTTGAGAACTTACTGG 58.934 47.826 0.00 0.00 36.77 4.00
2832 2876 6.238402 GGTTGAGAACTTACTGGTTTGAGAAC 60.238 42.308 0.00 0.00 34.96 3.01
2845 2889 4.214332 GGTTTGAGAACTGTCCTTTAGCAG 59.786 45.833 0.00 0.00 36.03 4.24
2851 2895 5.241662 AGAACTGTCCTTTAGCAGAATGAC 58.758 41.667 0.00 0.00 39.69 3.06
2863 2907 3.681897 AGCAGAATGACGTGTTGATCTTC 59.318 43.478 0.00 0.00 39.69 2.87
2881 2925 8.251750 TGATCTTCAAAGAATTAACGTACCAG 57.748 34.615 0.00 0.00 38.77 4.00
2882 2926 7.876068 TGATCTTCAAAGAATTAACGTACCAGT 59.124 33.333 0.00 0.00 38.77 4.00
2897 2941 1.352352 ACCAGTTAGCTTGGCATGACT 59.648 47.619 0.00 3.91 0.00 3.41
2955 2999 7.459795 TGCAAATTAGGTGTCATGTATTGAA 57.540 32.000 0.00 0.00 35.70 2.69
2970 3014 8.400186 TCATGTATTGAACTATGACATGCAAAG 58.600 33.333 8.14 0.00 44.50 2.77
2984 3028 0.598065 GCAAAGTCGCCCTGATTTGT 59.402 50.000 0.00 0.00 35.55 2.83
3012 3056 3.376218 TGTTTGCAATGGCCAACAC 57.624 47.368 10.96 1.66 46.86 3.32
3013 3057 0.538584 TGTTTGCAATGGCCAACACA 59.461 45.000 10.96 4.95 46.86 3.72
3014 3058 0.936600 GTTTGCAATGGCCAACACAC 59.063 50.000 10.96 8.45 43.22 3.82
3031 3075 2.682352 CACACACACACACAAAGGATCA 59.318 45.455 0.00 0.00 0.00 2.92
3032 3076 3.316029 CACACACACACACAAAGGATCAT 59.684 43.478 0.00 0.00 0.00 2.45
3055 3099 3.606153 GCCGACAAATATCAACGCCATAC 60.606 47.826 0.00 0.00 0.00 2.39
3098 3144 1.337118 GGGGGACAAAGCAATGAACA 58.663 50.000 0.00 0.00 0.00 3.18
3104 3150 4.180057 GGACAAAGCAATGAACACAACAA 58.820 39.130 0.00 0.00 0.00 2.83
3109 3155 4.771590 AGCAATGAACACAACAATCGAT 57.228 36.364 0.00 0.00 0.00 3.59
3117 3163 7.195839 TGAACACAACAATCGATGAAATACA 57.804 32.000 0.00 0.00 0.00 2.29
3124 3170 8.729756 ACAACAATCGATGAAATACAAGAATGA 58.270 29.630 0.00 0.00 30.50 2.57
3129 3175 7.482654 TCGATGAAATACAAGAATGACCATC 57.517 36.000 0.00 0.00 0.00 3.51
3154 3201 4.446994 TGCAACACAAACACATGAGAAA 57.553 36.364 0.00 0.00 0.00 2.52
3206 3253 0.668096 ACGAGATGCAAACGCCGTTA 60.668 50.000 1.51 0.00 0.00 3.18
3244 3291 4.827481 CCAGACCGTGGGTTATCG 57.173 61.111 0.00 0.00 43.63 2.92
3253 3300 2.613474 CCGTGGGTTATCGTTCCAAAGA 60.613 50.000 0.00 0.00 31.73 2.52
3260 3307 6.596497 TGGGTTATCGTTCCAAAGATTAAGTC 59.404 38.462 0.00 0.00 0.00 3.01
3274 3321 6.210287 AGATTAAGTCCGAGTAAACTCCAG 57.790 41.667 4.58 0.00 39.79 3.86
3276 3323 0.896226 AGTCCGAGTAAACTCCAGGC 59.104 55.000 4.58 0.00 39.79 4.85
3282 3329 1.813178 GAGTAAACTCCAGGCAAAGCC 59.187 52.381 0.00 0.00 42.12 4.35
3302 3349 3.623510 GCCTTCTATAAGCAGGTGACAAC 59.376 47.826 0.00 0.00 30.87 3.32
3304 3351 4.495422 CTTCTATAAGCAGGTGACAACGT 58.505 43.478 0.00 0.00 0.00 3.99
3342 3389 5.321102 AGCCAAGTATAAAACATGGTGACA 58.679 37.500 0.00 0.00 46.61 3.58
3369 3416 4.811557 CCTAGGATTTTCACCTAAAGCTCG 59.188 45.833 1.05 0.00 39.17 5.03
3373 3420 4.568760 GGATTTTCACCTAAAGCTCGAGAG 59.431 45.833 18.75 4.02 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.992754 AACATCAGCAGATCTTCTAGTTTTT 57.007 32.000 0.00 0.00 30.20 1.94
209 210 6.347696 TGTGTGAGATGCATGTGATATGTTA 58.652 36.000 2.46 0.00 0.00 2.41
395 403 3.092301 ACGTGTCATCTCATCTTCTCCA 58.908 45.455 0.00 0.00 0.00 3.86
679 687 9.325198 GGGAAATACACAAAACTTCAAAATTCT 57.675 29.630 0.00 0.00 0.00 2.40
696 704 6.126409 AGTGTTTGAGTTTGAGGGAAATACA 58.874 36.000 0.00 0.00 0.00 2.29
725 733 2.459060 TGCCTTACGAAACGAATGGA 57.541 45.000 0.00 0.00 0.00 3.41
1062 1080 6.622462 GCTCACATTCTCTTGATCCAAGTTTC 60.622 42.308 6.59 0.00 41.66 2.78
1093 1111 1.369625 AGTTCCGCCGCTTGATTTAG 58.630 50.000 0.00 0.00 0.00 1.85
1094 1112 2.676632 TAGTTCCGCCGCTTGATTTA 57.323 45.000 0.00 0.00 0.00 1.40
1339 1357 4.258543 TGACCAGCCTAAATAGGTTTTCG 58.741 43.478 8.24 0.00 45.42 3.46
1364 1382 6.852420 TGTTACTTGCTATGTTACTCTCCT 57.148 37.500 0.00 0.00 0.00 3.69
1370 1388 9.916397 GATGTGTTATGTTACTTGCTATGTTAC 57.084 33.333 0.00 0.00 0.00 2.50
1397 1415 4.389687 GCCACATAAGCAAAATTGTCTTGG 59.610 41.667 10.85 7.09 0.00 3.61
1413 1431 6.888105 TCTCTCATTCACTATTTGCCACATA 58.112 36.000 0.00 0.00 0.00 2.29
1414 1432 5.748402 TCTCTCATTCACTATTTGCCACAT 58.252 37.500 0.00 0.00 0.00 3.21
1415 1433 5.164620 TCTCTCATTCACTATTTGCCACA 57.835 39.130 0.00 0.00 0.00 4.17
1416 1434 5.587844 ACATCTCTCATTCACTATTTGCCAC 59.412 40.000 0.00 0.00 0.00 5.01
1428 1446 6.073058 TGTTAGCACAAACACATCTCTCATTC 60.073 38.462 0.00 0.00 34.50 2.67
1513 1531 1.159713 TATCCGCATGCAAGCCTTCG 61.160 55.000 19.57 0.00 0.00 3.79
1527 1545 3.214696 AGGAGCAAAAGGGAATATCCG 57.785 47.619 0.00 0.00 37.43 4.18
1528 1546 4.065789 CGTAGGAGCAAAAGGGAATATCC 58.934 47.826 0.00 0.00 35.23 2.59
1529 1547 4.511826 CACGTAGGAGCAAAAGGGAATATC 59.488 45.833 0.00 0.00 0.00 1.63
1530 1548 4.451900 CACGTAGGAGCAAAAGGGAATAT 58.548 43.478 0.00 0.00 0.00 1.28
1531 1549 3.869065 CACGTAGGAGCAAAAGGGAATA 58.131 45.455 0.00 0.00 0.00 1.75
1532 1550 2.711542 CACGTAGGAGCAAAAGGGAAT 58.288 47.619 0.00 0.00 0.00 3.01
1533 1551 1.880646 GCACGTAGGAGCAAAAGGGAA 60.881 52.381 0.00 0.00 32.99 3.97
1534 1552 0.321298 GCACGTAGGAGCAAAAGGGA 60.321 55.000 0.00 0.00 32.99 4.20
1535 1553 0.605319 TGCACGTAGGAGCAAAAGGG 60.605 55.000 5.02 0.00 39.51 3.95
1536 1554 1.453155 ATGCACGTAGGAGCAAAAGG 58.547 50.000 11.45 0.00 44.85 3.11
1537 1555 3.546815 GCATATGCACGTAGGAGCAAAAG 60.547 47.826 22.84 5.72 44.85 2.27
1538 1556 2.354510 GCATATGCACGTAGGAGCAAAA 59.645 45.455 22.84 4.03 44.85 2.44
1539 1557 1.939934 GCATATGCACGTAGGAGCAAA 59.060 47.619 22.84 0.00 44.85 3.68
1540 1558 1.581934 GCATATGCACGTAGGAGCAA 58.418 50.000 22.84 2.63 44.85 3.91
1541 1559 3.289128 GCATATGCACGTAGGAGCA 57.711 52.632 22.84 9.91 45.65 4.26
1552 1570 1.308047 TCGACAATGGGTGCATATGC 58.692 50.000 21.09 21.09 42.50 3.14
1553 1571 4.572985 ATTTCGACAATGGGTGCATATG 57.427 40.909 0.00 0.00 0.00 1.78
1554 1572 5.008613 GTGTATTTCGACAATGGGTGCATAT 59.991 40.000 0.00 0.00 0.00 1.78
1555 1573 4.334203 GTGTATTTCGACAATGGGTGCATA 59.666 41.667 0.00 0.00 0.00 3.14
1556 1574 3.128589 GTGTATTTCGACAATGGGTGCAT 59.871 43.478 0.00 0.00 0.00 3.96
1557 1575 2.486203 GTGTATTTCGACAATGGGTGCA 59.514 45.455 0.00 0.00 0.00 4.57
1558 1576 2.486203 TGTGTATTTCGACAATGGGTGC 59.514 45.455 0.00 0.00 0.00 5.01
1559 1577 4.963276 ATGTGTATTTCGACAATGGGTG 57.037 40.909 0.00 0.00 0.00 4.61
1560 1578 5.949735 GAAATGTGTATTTCGACAATGGGT 58.050 37.500 0.00 0.00 41.81 4.51
1570 1588 8.555166 TGTCAACTTTTCGAAATGTGTATTTC 57.445 30.769 24.84 14.60 45.57 2.17
1571 1589 8.918961 TTGTCAACTTTTCGAAATGTGTATTT 57.081 26.923 24.84 10.27 39.16 1.40
1572 1590 8.918961 TTTGTCAACTTTTCGAAATGTGTATT 57.081 26.923 24.84 10.58 0.00 1.89
1573 1591 9.528018 AATTTGTCAACTTTTCGAAATGTGTAT 57.472 25.926 24.84 10.89 0.00 2.29
1574 1592 8.918961 AATTTGTCAACTTTTCGAAATGTGTA 57.081 26.923 24.84 15.47 0.00 2.90
1575 1593 7.253618 CGAATTTGTCAACTTTTCGAAATGTGT 60.254 33.333 24.84 15.31 41.09 3.72
1576 1594 7.050811 CGAATTTGTCAACTTTTCGAAATGTG 58.949 34.615 24.84 18.95 41.09 3.21
1577 1595 6.198216 CCGAATTTGTCAACTTTTCGAAATGT 59.802 34.615 20.26 20.26 41.09 2.71
1578 1596 6.416455 TCCGAATTTGTCAACTTTTCGAAATG 59.584 34.615 19.08 19.08 41.09 2.32
1579 1597 6.500041 TCCGAATTTGTCAACTTTTCGAAAT 58.500 32.000 12.12 0.00 41.09 2.17
1580 1598 5.881447 TCCGAATTTGTCAACTTTTCGAAA 58.119 33.333 18.79 6.47 41.09 3.46
1581 1599 5.487153 TCCGAATTTGTCAACTTTTCGAA 57.513 34.783 18.79 0.00 41.09 3.71
1582 1600 5.163744 TGTTCCGAATTTGTCAACTTTTCGA 60.164 36.000 18.79 8.24 41.09 3.71
1583 1601 5.031578 TGTTCCGAATTTGTCAACTTTTCG 58.968 37.500 13.58 13.58 39.00 3.46
1584 1602 6.879188 TTGTTCCGAATTTGTCAACTTTTC 57.121 33.333 6.40 0.00 0.00 2.29
1585 1603 7.659652 TTTTGTTCCGAATTTGTCAACTTTT 57.340 28.000 6.40 0.00 0.00 2.27
1586 1604 7.360522 GGTTTTTGTTCCGAATTTGTCAACTTT 60.361 33.333 6.40 0.00 0.00 2.66
1587 1605 6.091577 GGTTTTTGTTCCGAATTTGTCAACTT 59.908 34.615 6.40 0.00 0.00 2.66
1588 1606 5.579119 GGTTTTTGTTCCGAATTTGTCAACT 59.421 36.000 6.40 0.00 0.00 3.16
1589 1607 5.220510 GGGTTTTTGTTCCGAATTTGTCAAC 60.221 40.000 0.00 0.00 0.00 3.18
1590 1608 4.870991 GGGTTTTTGTTCCGAATTTGTCAA 59.129 37.500 0.00 0.00 0.00 3.18
1591 1609 4.434520 GGGTTTTTGTTCCGAATTTGTCA 58.565 39.130 0.00 0.00 0.00 3.58
1592 1610 3.805422 GGGGTTTTTGTTCCGAATTTGTC 59.195 43.478 0.00 0.00 0.00 3.18
1593 1611 3.738590 CGGGGTTTTTGTTCCGAATTTGT 60.739 43.478 0.00 0.00 44.69 2.83
1594 1612 2.797719 CGGGGTTTTTGTTCCGAATTTG 59.202 45.455 0.00 0.00 44.69 2.32
1595 1613 2.803852 GCGGGGTTTTTGTTCCGAATTT 60.804 45.455 4.71 0.00 44.69 1.82
1596 1614 1.269883 GCGGGGTTTTTGTTCCGAATT 60.270 47.619 4.71 0.00 44.69 2.17
1597 1615 0.315886 GCGGGGTTTTTGTTCCGAAT 59.684 50.000 4.71 0.00 44.69 3.34
1598 1616 1.734748 GCGGGGTTTTTGTTCCGAA 59.265 52.632 4.71 0.00 44.69 4.30
1599 1617 2.544698 CGCGGGGTTTTTGTTCCGA 61.545 57.895 0.00 0.00 44.69 4.55
1600 1618 2.050805 CGCGGGGTTTTTGTTCCG 60.051 61.111 0.00 0.00 44.70 4.30
1601 1619 1.299544 CACGCGGGGTTTTTGTTCC 60.300 57.895 12.47 0.00 0.00 3.62
1602 1620 0.662085 TACACGCGGGGTTTTTGTTC 59.338 50.000 15.46 0.00 0.00 3.18
1603 1621 1.320507 ATACACGCGGGGTTTTTGTT 58.679 45.000 15.46 0.00 0.00 2.83
1604 1622 2.181954 TATACACGCGGGGTTTTTGT 57.818 45.000 15.46 7.48 0.00 2.83
1605 1623 2.032426 GGATATACACGCGGGGTTTTTG 59.968 50.000 15.46 0.12 0.00 2.44
1606 1624 2.291365 GGATATACACGCGGGGTTTTT 58.709 47.619 15.46 0.00 0.00 1.94
1607 1625 1.807377 CGGATATACACGCGGGGTTTT 60.807 52.381 15.46 3.58 0.00 2.43
1608 1626 0.249573 CGGATATACACGCGGGGTTT 60.250 55.000 15.46 7.35 0.00 3.27
1609 1627 1.364901 CGGATATACACGCGGGGTT 59.635 57.895 15.46 0.91 0.00 4.11
1610 1628 2.567497 CCGGATATACACGCGGGGT 61.567 63.158 15.46 12.52 0.00 4.95
1611 1629 2.260434 CCGGATATACACGCGGGG 59.740 66.667 15.46 5.78 0.00 5.73
1612 1630 1.080974 GTCCGGATATACACGCGGG 60.081 63.158 6.92 6.92 0.00 6.13
1613 1631 0.242825 ATGTCCGGATATACACGCGG 59.757 55.000 12.63 1.27 0.00 6.46
1614 1632 2.060326 AATGTCCGGATATACACGCG 57.940 50.000 14.71 3.53 0.00 6.01
1615 1633 5.407387 ACATAAAATGTCCGGATATACACGC 59.593 40.000 14.71 0.00 39.92 5.34
1630 1648 7.113404 CGAAACCTTGTGAACAGACATAAAATG 59.887 37.037 0.00 0.00 0.00 2.32
1631 1649 7.138736 CGAAACCTTGTGAACAGACATAAAAT 58.861 34.615 0.00 0.00 0.00 1.82
1632 1650 6.459024 CCGAAACCTTGTGAACAGACATAAAA 60.459 38.462 0.00 0.00 0.00 1.52
1633 1651 5.008217 CCGAAACCTTGTGAACAGACATAAA 59.992 40.000 0.00 0.00 0.00 1.40
1634 1652 4.513692 CCGAAACCTTGTGAACAGACATAA 59.486 41.667 0.00 0.00 0.00 1.90
1635 1653 4.062293 CCGAAACCTTGTGAACAGACATA 58.938 43.478 0.00 0.00 0.00 2.29
1636 1654 2.878406 CCGAAACCTTGTGAACAGACAT 59.122 45.455 0.00 0.00 0.00 3.06
1637 1655 2.285083 CCGAAACCTTGTGAACAGACA 58.715 47.619 0.00 0.00 0.00 3.41
1638 1656 2.031683 CACCGAAACCTTGTGAACAGAC 59.968 50.000 0.00 0.00 31.66 3.51
1639 1657 2.093394 TCACCGAAACCTTGTGAACAGA 60.093 45.455 0.00 0.00 36.16 3.41
1640 1658 2.285083 TCACCGAAACCTTGTGAACAG 58.715 47.619 0.00 0.00 36.16 3.16
1641 1659 2.404923 TCACCGAAACCTTGTGAACA 57.595 45.000 0.00 0.00 36.16 3.18
1642 1660 3.768468 TTTCACCGAAACCTTGTGAAC 57.232 42.857 3.97 0.00 45.68 3.18
1643 1661 4.487019 GTTTTTCACCGAAACCTTGTGAA 58.513 39.130 0.00 0.00 44.70 3.18
1644 1662 3.426426 CGTTTTTCACCGAAACCTTGTGA 60.426 43.478 0.00 0.00 37.24 3.58
1645 1663 2.849473 CGTTTTTCACCGAAACCTTGTG 59.151 45.455 0.00 0.00 34.35 3.33
1646 1664 2.748532 TCGTTTTTCACCGAAACCTTGT 59.251 40.909 0.00 0.00 34.35 3.16
1647 1665 3.103007 GTCGTTTTTCACCGAAACCTTG 58.897 45.455 0.00 0.00 34.35 3.61
1648 1666 2.223089 CGTCGTTTTTCACCGAAACCTT 60.223 45.455 0.00 0.00 34.35 3.50
1649 1667 1.328374 CGTCGTTTTTCACCGAAACCT 59.672 47.619 0.00 0.00 34.35 3.50
1650 1668 1.062440 ACGTCGTTTTTCACCGAAACC 59.938 47.619 0.00 0.00 34.35 3.27
1651 1669 2.440560 ACGTCGTTTTTCACCGAAAC 57.559 45.000 0.00 0.00 34.47 2.78
1652 1670 3.468304 AAACGTCGTTTTTCACCGAAA 57.532 38.095 17.41 0.00 31.10 3.46
1653 1671 3.468304 AAAACGTCGTTTTTCACCGAA 57.532 38.095 26.23 0.00 42.11 4.30
1688 1706 8.897872 AATGAAGCATCAGAAATTGTCTTTTT 57.102 26.923 0.00 0.00 39.39 1.94
1689 1707 8.365647 AGAATGAAGCATCAGAAATTGTCTTTT 58.634 29.630 0.00 0.00 39.39 2.27
1690 1708 7.893658 AGAATGAAGCATCAGAAATTGTCTTT 58.106 30.769 0.00 0.00 39.39 2.52
1691 1709 7.463961 AGAATGAAGCATCAGAAATTGTCTT 57.536 32.000 0.00 0.00 39.39 3.01
1692 1710 8.457261 GTTAGAATGAAGCATCAGAAATTGTCT 58.543 33.333 0.00 0.00 39.39 3.41
1693 1711 8.457261 AGTTAGAATGAAGCATCAGAAATTGTC 58.543 33.333 0.00 0.00 39.39 3.18
1694 1712 8.345724 AGTTAGAATGAAGCATCAGAAATTGT 57.654 30.769 0.00 0.00 39.39 2.71
1698 1716 9.671279 TGAATAGTTAGAATGAAGCATCAGAAA 57.329 29.630 0.00 0.00 39.39 2.52
1699 1717 9.102757 GTGAATAGTTAGAATGAAGCATCAGAA 57.897 33.333 0.00 0.00 39.39 3.02
1700 1718 7.436376 CGTGAATAGTTAGAATGAAGCATCAGA 59.564 37.037 0.00 0.00 39.39 3.27
1701 1719 7.436376 TCGTGAATAGTTAGAATGAAGCATCAG 59.564 37.037 0.00 0.00 39.39 2.90
1702 1720 7.264947 TCGTGAATAGTTAGAATGAAGCATCA 58.735 34.615 0.00 0.00 40.57 3.07
1703 1721 7.700322 TCGTGAATAGTTAGAATGAAGCATC 57.300 36.000 0.00 0.00 0.00 3.91
1704 1722 7.307632 GCATCGTGAATAGTTAGAATGAAGCAT 60.308 37.037 0.00 0.00 0.00 3.79
1705 1723 6.018751 GCATCGTGAATAGTTAGAATGAAGCA 60.019 38.462 0.00 0.00 0.00 3.91
1706 1724 6.018751 TGCATCGTGAATAGTTAGAATGAAGC 60.019 38.462 0.00 0.00 0.00 3.86
1707 1725 7.468922 TGCATCGTGAATAGTTAGAATGAAG 57.531 36.000 0.00 0.00 0.00 3.02
1708 1726 8.437360 AATGCATCGTGAATAGTTAGAATGAA 57.563 30.769 0.00 0.00 0.00 2.57
1709 1727 8.437360 AAATGCATCGTGAATAGTTAGAATGA 57.563 30.769 0.00 0.00 0.00 2.57
1710 1728 8.554528 AGAAATGCATCGTGAATAGTTAGAATG 58.445 33.333 0.00 0.00 0.00 2.67
1711 1729 8.668510 AGAAATGCATCGTGAATAGTTAGAAT 57.331 30.769 0.00 0.00 0.00 2.40
1712 1730 8.492673 AAGAAATGCATCGTGAATAGTTAGAA 57.507 30.769 0.00 0.00 0.00 2.10
1713 1731 8.492673 AAAGAAATGCATCGTGAATAGTTAGA 57.507 30.769 0.00 0.00 0.00 2.10
1716 1734 9.113838 AGATAAAGAAATGCATCGTGAATAGTT 57.886 29.630 0.00 0.00 0.00 2.24
1717 1735 8.668510 AGATAAAGAAATGCATCGTGAATAGT 57.331 30.769 0.00 0.00 0.00 2.12
1718 1736 9.941664 AAAGATAAAGAAATGCATCGTGAATAG 57.058 29.630 0.00 0.00 0.00 1.73
1720 1738 9.643693 AAAAAGATAAAGAAATGCATCGTGAAT 57.356 25.926 0.00 0.00 0.00 2.57
1761 1779 3.468304 TTCGGTGAAAAACGACGTTTT 57.532 38.095 28.19 28.19 45.94 2.43
1762 1780 3.162831 GTTTCGGTGAAAAACGACGTTT 58.837 40.909 19.83 19.83 39.04 3.60
1763 1781 2.159234 TGTTTCGGTGAAAAACGACGTT 59.841 40.909 7.57 7.57 39.04 3.99
1764 1782 1.731160 TGTTTCGGTGAAAAACGACGT 59.269 42.857 0.00 0.00 39.04 4.34
1765 1783 2.438933 TGTTTCGGTGAAAAACGACG 57.561 45.000 0.00 0.00 39.04 5.12
1766 1784 6.137415 TCATAATGTTTCGGTGAAAAACGAC 58.863 36.000 0.00 0.00 39.04 4.34
1767 1785 6.301687 TCATAATGTTTCGGTGAAAAACGA 57.698 33.333 0.00 0.00 39.04 3.85
1768 1786 6.397069 CGTTCATAATGTTTCGGTGAAAAACG 60.397 38.462 8.03 8.03 39.04 3.60
1769 1787 6.129300 CCGTTCATAATGTTTCGGTGAAAAAC 60.129 38.462 0.00 0.00 37.18 2.43
1770 1788 5.915758 CCGTTCATAATGTTTCGGTGAAAAA 59.084 36.000 0.00 0.00 33.14 1.94
1771 1789 5.238868 TCCGTTCATAATGTTTCGGTGAAAA 59.761 36.000 0.00 0.00 39.14 2.29
1772 1790 4.755629 TCCGTTCATAATGTTTCGGTGAAA 59.244 37.500 0.00 0.00 39.14 2.69
1773 1791 4.152759 GTCCGTTCATAATGTTTCGGTGAA 59.847 41.667 0.00 0.00 39.14 3.18
1774 1792 3.680937 GTCCGTTCATAATGTTTCGGTGA 59.319 43.478 0.00 0.00 39.14 4.02
1775 1793 3.433957 TGTCCGTTCATAATGTTTCGGTG 59.566 43.478 0.00 0.00 39.14 4.94
1776 1794 3.666274 TGTCCGTTCATAATGTTTCGGT 58.334 40.909 0.00 0.00 39.14 4.69
1777 1795 4.875544 ATGTCCGTTCATAATGTTTCGG 57.124 40.909 0.00 0.00 39.40 4.30
1778 1796 8.835467 ATTTTATGTCCGTTCATAATGTTTCG 57.165 30.769 9.29 0.00 39.17 3.46
1793 1811 7.042925 GCGTGTATATCCGGATATTTTATGTCC 60.043 40.741 35.62 16.44 37.22 4.02
1794 1812 7.305820 CGCGTGTATATCCGGATATTTTATGTC 60.306 40.741 35.62 21.04 35.71 3.06
1795 1813 6.474427 CGCGTGTATATCCGGATATTTTATGT 59.526 38.462 35.62 17.54 35.71 2.29
1796 1814 6.074516 CCGCGTGTATATCCGGATATTTTATG 60.075 42.308 35.62 26.23 43.20 1.90
1797 1815 5.981315 CCGCGTGTATATCCGGATATTTTAT 59.019 40.000 35.62 19.83 43.20 1.40
1798 1816 5.342433 CCGCGTGTATATCCGGATATTTTA 58.658 41.667 35.62 21.60 43.20 1.52
1799 1817 4.178540 CCGCGTGTATATCCGGATATTTT 58.821 43.478 35.62 19.57 43.20 1.82
1800 1818 3.429822 CCCGCGTGTATATCCGGATATTT 60.430 47.826 35.62 20.25 43.20 1.40
1801 1819 2.100252 CCCGCGTGTATATCCGGATATT 59.900 50.000 35.62 21.93 43.20 1.28
1802 1820 1.679680 CCCGCGTGTATATCCGGATAT 59.320 52.381 33.62 33.62 43.20 1.63
1803 1821 1.097232 CCCGCGTGTATATCCGGATA 58.903 55.000 25.97 25.97 43.20 2.59
1804 1822 0.609957 TCCCGCGTGTATATCCGGAT 60.610 55.000 22.95 22.95 43.20 4.18
1805 1823 0.609957 ATCCCGCGTGTATATCCGGA 60.610 55.000 6.61 6.61 43.20 5.14
1806 1824 0.245539 AATCCCGCGTGTATATCCGG 59.754 55.000 4.92 0.00 40.39 5.14
1807 1825 2.074547 AAATCCCGCGTGTATATCCG 57.925 50.000 4.92 0.00 0.00 4.18
1808 1826 3.562557 ACAAAAATCCCGCGTGTATATCC 59.437 43.478 4.92 0.00 0.00 2.59
1809 1827 4.806342 ACAAAAATCCCGCGTGTATATC 57.194 40.909 4.92 0.00 0.00 1.63
1810 1828 4.035909 GGAACAAAAATCCCGCGTGTATAT 59.964 41.667 4.92 0.00 0.00 0.86
1811 1829 3.374678 GGAACAAAAATCCCGCGTGTATA 59.625 43.478 4.92 0.00 0.00 1.47
1812 1830 2.162809 GGAACAAAAATCCCGCGTGTAT 59.837 45.455 4.92 0.00 0.00 2.29
1813 1831 1.536331 GGAACAAAAATCCCGCGTGTA 59.464 47.619 4.92 0.00 0.00 2.90
1814 1832 0.312729 GGAACAAAAATCCCGCGTGT 59.687 50.000 4.92 0.00 0.00 4.49
1815 1833 0.727793 CGGAACAAAAATCCCGCGTG 60.728 55.000 4.92 0.00 35.29 5.34
1816 1834 0.885596 TCGGAACAAAAATCCCGCGT 60.886 50.000 4.92 0.00 41.55 6.01
1817 1835 0.238817 TTCGGAACAAAAATCCCGCG 59.761 50.000 0.00 0.00 41.55 6.46
1818 1836 2.647529 ATTCGGAACAAAAATCCCGC 57.352 45.000 0.00 0.00 41.55 6.13
1819 1837 5.463724 TGAAAAATTCGGAACAAAAATCCCG 59.536 36.000 0.00 0.00 43.02 5.14
1820 1838 6.852858 TGAAAAATTCGGAACAAAAATCCC 57.147 33.333 0.00 0.00 33.13 3.85
1821 1839 7.915508 AGTTGAAAAATTCGGAACAAAAATCC 58.084 30.769 0.00 0.00 0.00 3.01
1822 1840 9.767684 AAAGTTGAAAAATTCGGAACAAAAATC 57.232 25.926 0.00 0.00 30.03 2.17
1824 1842 9.600646 GAAAAGTTGAAAAATTCGGAACAAAAA 57.399 25.926 0.00 0.00 30.03 1.94
1825 1843 8.774586 TGAAAAGTTGAAAAATTCGGAACAAAA 58.225 25.926 0.00 0.00 30.03 2.44
1826 1844 8.311650 TGAAAAGTTGAAAAATTCGGAACAAA 57.688 26.923 0.00 0.00 30.03 2.83
1827 1845 7.891183 TGAAAAGTTGAAAAATTCGGAACAA 57.109 28.000 0.00 0.00 30.03 2.83
1828 1846 7.891183 TTGAAAAGTTGAAAAATTCGGAACA 57.109 28.000 0.00 0.00 30.03 3.18
1829 1847 9.767684 ATTTTGAAAAGTTGAAAAATTCGGAAC 57.232 25.926 0.00 0.00 30.03 3.62
1840 1858 9.374960 CGAAAACACAAATTTTGAAAAGTTGAA 57.625 25.926 29.83 0.00 31.90 2.69
1841 1859 8.765219 TCGAAAACACAAATTTTGAAAAGTTGA 58.235 25.926 29.83 8.65 31.90 3.18
1842 1860 8.826658 GTCGAAAACACAAATTTTGAAAAGTTG 58.173 29.630 23.90 23.90 33.22 3.16
1843 1861 8.552034 TGTCGAAAACACAAATTTTGAAAAGTT 58.448 25.926 15.81 10.81 33.22 2.66
1844 1862 8.077836 TGTCGAAAACACAAATTTTGAAAAGT 57.922 26.923 15.81 5.95 33.22 2.66
1845 1863 8.925788 TTGTCGAAAACACAAATTTTGAAAAG 57.074 26.923 15.81 5.39 37.70 2.27
1846 1864 9.322776 CATTGTCGAAAACACAAATTTTGAAAA 57.677 25.926 15.81 0.00 37.70 2.29
1847 1865 7.959651 CCATTGTCGAAAACACAAATTTTGAAA 59.040 29.630 15.81 0.00 37.70 2.69
1848 1866 7.413438 CCCATTGTCGAAAACACAAATTTTGAA 60.413 33.333 15.81 0.00 37.70 2.69
1849 1867 6.036517 CCCATTGTCGAAAACACAAATTTTGA 59.963 34.615 15.81 0.00 37.70 2.69
1850 1868 6.183360 ACCCATTGTCGAAAACACAAATTTTG 60.183 34.615 7.59 7.59 37.70 2.44
1851 1869 5.877564 ACCCATTGTCGAAAACACAAATTTT 59.122 32.000 0.00 0.00 37.70 1.82
1852 1870 5.293079 CACCCATTGTCGAAAACACAAATTT 59.707 36.000 0.00 0.00 37.70 1.82
1853 1871 4.808364 CACCCATTGTCGAAAACACAAATT 59.192 37.500 0.00 0.00 37.70 1.82
1854 1872 4.367450 CACCCATTGTCGAAAACACAAAT 58.633 39.130 0.00 0.00 37.70 2.32
1855 1873 3.775202 CACCCATTGTCGAAAACACAAA 58.225 40.909 0.00 0.00 37.70 2.83
1856 1874 2.480416 GCACCCATTGTCGAAAACACAA 60.480 45.455 0.00 0.00 37.70 3.33
1857 1875 1.066303 GCACCCATTGTCGAAAACACA 59.934 47.619 0.00 0.00 37.70 3.72
1858 1876 1.066303 TGCACCCATTGTCGAAAACAC 59.934 47.619 0.00 0.00 37.70 3.32
1859 1877 1.393603 TGCACCCATTGTCGAAAACA 58.606 45.000 0.00 0.00 35.59 2.83
1860 1878 2.723124 ATGCACCCATTGTCGAAAAC 57.277 45.000 0.00 0.00 0.00 2.43
1861 1879 3.428725 GCATATGCACCCATTGTCGAAAA 60.429 43.478 22.84 0.00 41.59 2.29
1862 1880 2.098934 GCATATGCACCCATTGTCGAAA 59.901 45.455 22.84 0.00 41.59 3.46
1863 1881 1.675483 GCATATGCACCCATTGTCGAA 59.325 47.619 22.84 0.00 41.59 3.71
1864 1882 1.308047 GCATATGCACCCATTGTCGA 58.692 50.000 22.84 0.00 41.59 4.20
1865 1883 3.851620 GCATATGCACCCATTGTCG 57.148 52.632 22.84 0.00 41.59 4.35
1876 1894 2.260844 TTGCTCCTAGGTGCATATGC 57.739 50.000 32.88 21.09 42.86 3.14
1895 1913 3.284449 AAGCGGACGCGGCTTTTT 61.284 55.556 13.91 0.00 45.27 1.94
1896 1914 4.025401 CAAGCGGACGCGGCTTTT 62.025 61.111 13.91 0.23 45.27 2.27
1903 1921 3.422303 TGACATGCAAGCGGACGC 61.422 61.111 8.91 8.91 42.33 5.19
1904 1922 0.735978 TAGTGACATGCAAGCGGACG 60.736 55.000 0.00 0.00 0.00 4.79
1905 1923 0.721718 GTAGTGACATGCAAGCGGAC 59.278 55.000 0.00 0.00 0.00 4.79
1906 1924 0.320050 TGTAGTGACATGCAAGCGGA 59.680 50.000 0.00 0.00 0.00 5.54
1907 1925 0.443869 GTGTAGTGACATGCAAGCGG 59.556 55.000 0.00 0.00 38.04 5.52
1908 1926 1.147473 TGTGTAGTGACATGCAAGCG 58.853 50.000 0.00 0.00 38.04 4.68
1909 1927 4.333649 ACATATGTGTAGTGACATGCAAGC 59.666 41.667 7.78 0.00 38.04 4.01
1910 1928 6.426980 AACATATGTGTAGTGACATGCAAG 57.573 37.500 9.63 0.00 37.67 4.01
1911 1929 7.768120 TCATAACATATGTGTAGTGACATGCAA 59.232 33.333 9.63 0.00 37.67 4.08
1912 1930 7.271511 TCATAACATATGTGTAGTGACATGCA 58.728 34.615 9.63 0.00 37.67 3.96
1913 1931 7.713764 TCATAACATATGTGTAGTGACATGC 57.286 36.000 9.63 0.00 37.67 4.06
1914 1932 8.768019 CCTTCATAACATATGTGTAGTGACATG 58.232 37.037 9.63 0.00 37.67 3.21
1915 1933 8.486210 ACCTTCATAACATATGTGTAGTGACAT 58.514 33.333 9.63 0.00 37.67 3.06
1916 1934 7.847096 ACCTTCATAACATATGTGTAGTGACA 58.153 34.615 9.63 3.13 37.67 3.58
1917 1935 9.811995 TTACCTTCATAACATATGTGTAGTGAC 57.188 33.333 9.63 0.00 37.67 3.67
1975 1993 6.380560 GGTCATAGTGGGAAGTAACTTAGAGT 59.619 42.308 0.00 0.00 0.00 3.24
2045 2063 9.403110 TCGTAGTTGTTCTTGATACTTTAGTTC 57.597 33.333 0.00 0.00 0.00 3.01
2129 2164 9.528018 ACATGTCAACCAACTTGTATTTTTAAG 57.472 29.630 0.00 0.00 36.20 1.85
2370 2413 4.694982 TCACATCAATACTGCATCGTTGTT 59.305 37.500 0.00 0.00 0.00 2.83
2436 2480 7.384660 CAGCCTTTACAAATTTCATAGTGCAAA 59.615 33.333 0.00 0.00 0.00 3.68
2440 2484 7.156876 TCCAGCCTTTACAAATTTCATAGTG 57.843 36.000 0.00 0.00 0.00 2.74
2460 2504 4.624015 ACAAGTTTGCATGAATGTTCCAG 58.376 39.130 0.00 0.00 0.00 3.86
2584 2628 3.058708 GGCACAAACGGGAAGTACTTTAC 60.059 47.826 10.02 6.16 0.00 2.01
2627 2671 4.731773 GCACAATGAAATAAAGAGAGGCCG 60.732 45.833 0.00 0.00 0.00 6.13
2735 2779 7.917505 CACATGCTATCCCTTGAATAAGTTTTC 59.082 37.037 0.00 0.00 31.80 2.29
2773 2817 5.404968 GGACAACAAATTTGCAATCGATCAA 59.595 36.000 18.12 0.00 0.00 2.57
2774 2818 4.922692 GGACAACAAATTTGCAATCGATCA 59.077 37.500 18.12 0.00 0.00 2.92
2775 2819 4.922692 TGGACAACAAATTTGCAATCGATC 59.077 37.500 18.12 6.40 0.00 3.69
2780 2824 4.128643 CCAGTGGACAACAAATTTGCAAT 58.871 39.130 18.12 4.14 0.00 3.56
2799 2843 4.752101 CAGTAAGTTCTCAACCACTTCCAG 59.248 45.833 0.00 0.00 34.92 3.86
2823 2867 5.057149 TCTGCTAAAGGACAGTTCTCAAAC 58.943 41.667 0.00 0.00 35.37 2.93
2832 2876 3.369147 CACGTCATTCTGCTAAAGGACAG 59.631 47.826 13.91 10.01 39.31 3.51
2845 2889 6.228273 TCTTTGAAGATCAACACGTCATTC 57.772 37.500 0.00 0.00 35.89 2.67
2851 2895 7.069569 ACGTTAATTCTTTGAAGATCAACACG 58.930 34.615 0.00 3.67 35.89 4.49
2863 2907 7.360575 AGCTAACTGGTACGTTAATTCTTTG 57.639 36.000 0.00 0.00 30.18 2.77
2881 2925 7.524912 CATGAATATAGTCATGCCAAGCTAAC 58.475 38.462 25.26 0.00 46.14 2.34
2882 2926 7.677454 CATGAATATAGTCATGCCAAGCTAA 57.323 36.000 25.26 0.00 46.14 3.09
2920 2964 2.896685 CCTAATTTGCAACCAGGACCAA 59.103 45.455 12.76 0.00 0.00 3.67
2925 2969 2.890311 TGACACCTAATTTGCAACCAGG 59.110 45.455 15.40 15.40 0.00 4.45
2955 2999 2.009774 GGCGACTTTGCATGTCATAGT 58.990 47.619 16.93 11.04 39.23 2.12
2960 3004 0.955428 TCAGGGCGACTTTGCATGTC 60.955 55.000 9.51 9.51 36.28 3.06
2970 3014 3.244976 CAAATCAACAAATCAGGGCGAC 58.755 45.455 0.00 0.00 0.00 5.19
2984 3028 4.201990 GGCCATTGCAAACAAACAAATCAA 60.202 37.500 1.71 0.00 39.77 2.57
3011 3055 2.997980 TGATCCTTTGTGTGTGTGTGT 58.002 42.857 0.00 0.00 0.00 3.72
3012 3056 3.854414 GCATGATCCTTTGTGTGTGTGTG 60.854 47.826 0.00 0.00 0.00 3.82
3013 3057 2.294233 GCATGATCCTTTGTGTGTGTGT 59.706 45.455 0.00 0.00 0.00 3.72
3014 3058 2.352030 GGCATGATCCTTTGTGTGTGTG 60.352 50.000 0.00 0.00 0.00 3.82
3031 3075 1.333619 GGCGTTGATATTTGTCGGCAT 59.666 47.619 0.00 0.00 44.21 4.40
3032 3076 0.730265 GGCGTTGATATTTGTCGGCA 59.270 50.000 0.00 0.00 44.21 5.69
3055 3099 3.626670 CCTCAGGCATAGCTTTTCTCTTG 59.373 47.826 0.00 0.00 0.00 3.02
3098 3144 8.729756 TCATTCTTGTATTTCATCGATTGTTGT 58.270 29.630 0.00 0.00 0.00 3.32
3104 3150 7.935755 AGATGGTCATTCTTGTATTTCATCGAT 59.064 33.333 0.00 0.00 35.16 3.59
3109 3155 7.148188 GCAAGAGATGGTCATTCTTGTATTTCA 60.148 37.037 21.85 0.00 45.93 2.69
3117 3163 4.217118 GTGTTGCAAGAGATGGTCATTCTT 59.783 41.667 0.00 0.00 0.00 2.52
3124 3170 3.023119 TGTTTGTGTTGCAAGAGATGGT 58.977 40.909 0.00 0.00 38.47 3.55
3129 3175 4.031418 TCATGTGTTTGTGTTGCAAGAG 57.969 40.909 0.00 0.00 38.47 2.85
3154 3201 5.048224 TCGAGTCGTTACTTTTGGAGAATCT 60.048 40.000 13.12 0.00 35.56 2.40
3206 3253 0.991920 ACTCGGTGGTTGGATCCAAT 59.008 50.000 29.37 8.79 39.34 3.16
3244 3291 7.387122 AGTTTACTCGGACTTAATCTTTGGAAC 59.613 37.037 0.00 0.00 0.00 3.62
3253 3300 4.382793 GCCTGGAGTTTACTCGGACTTAAT 60.383 45.833 0.00 0.00 43.76 1.40
3260 3307 2.076863 CTTTGCCTGGAGTTTACTCGG 58.923 52.381 0.00 2.30 43.76 4.63
3274 3321 3.937311 ACCTGCTTATAGAAGGCTTTGCC 60.937 47.826 0.00 0.00 45.62 4.52
3276 3323 4.333926 GTCACCTGCTTATAGAAGGCTTTG 59.666 45.833 0.00 0.00 45.62 2.77
3282 3329 4.495422 ACGTTGTCACCTGCTTATAGAAG 58.505 43.478 0.00 0.00 35.60 2.85
3336 3383 4.636206 GTGAAAATCCTAGGTCATGTCACC 59.364 45.833 9.08 0.00 36.58 4.02
3342 3389 6.069381 AGCTTTAGGTGAAAATCCTAGGTCAT 60.069 38.462 9.08 0.00 38.55 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.