Multiple sequence alignment - TraesCS7D01G345500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G345500 chr7D 100.000 4142 0 0 1 4142 444346138 444350279 0.000000e+00 7649.0
1 TraesCS7D01G345500 chr7A 91.036 2287 144 33 784 3018 495430550 495432827 0.000000e+00 3031.0
2 TraesCS7D01G345500 chr7A 89.137 939 58 20 3118 4050 495536519 495537419 0.000000e+00 1129.0
3 TraesCS7D01G345500 chr7A 91.304 69 6 0 4074 4142 495537418 495537486 1.230000e-15 95.3
4 TraesCS7D01G345500 chr7A 87.342 79 4 3 718 796 495429533 495429605 7.380000e-13 86.1
5 TraesCS7D01G345500 chr7A 88.462 52 1 4 2 52 701544183 701544230 1.610000e-04 58.4
6 TraesCS7D01G345500 chr5B 89.881 2016 149 29 978 2954 476451295 476453294 0.000000e+00 2542.0
7 TraesCS7D01G345500 chr7B 94.243 1459 63 12 1564 3010 461201777 461203226 0.000000e+00 2209.0
8 TraesCS7D01G345500 chr7B 92.999 757 31 15 785 1522 461200737 461201490 0.000000e+00 1085.0
9 TraesCS7D01G345500 chr7B 92.722 316 18 3 3828 4142 461203836 461204147 6.310000e-123 451.0
10 TraesCS7D01G345500 chr7B 87.870 338 25 9 3065 3392 461203476 461203807 2.340000e-102 383.0
11 TraesCS7D01G345500 chr5D 88.142 1636 132 37 1507 3119 396430096 396431692 0.000000e+00 1890.0
12 TraesCS7D01G345500 chr5D 91.810 464 22 4 978 1437 396429625 396430076 2.100000e-177 632.0
13 TraesCS7D01G345500 chr6D 82.857 105 18 0 3503 3607 462614762 462614658 1.230000e-15 95.3
14 TraesCS7D01G345500 chr4B 91.489 47 2 2 233 278 440917395 440917350 3.460000e-06 63.9
15 TraesCS7D01G345500 chr3D 91.489 47 2 2 233 278 183592194 183592149 3.460000e-06 63.9
16 TraesCS7D01G345500 chr1B 90.698 43 3 1 215 256 679296744 679296702 5.780000e-04 56.5
17 TraesCS7D01G345500 chr2B 94.286 35 2 0 2 36 422498927 422498961 2.000000e-03 54.7
18 TraesCS7D01G345500 chr1A 100.000 29 0 0 228 256 348677759 348677787 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G345500 chr7D 444346138 444350279 4141 False 7649.00 7649 100.0000 1 4142 1 chr7D.!!$F1 4141
1 TraesCS7D01G345500 chr7A 495429533 495432827 3294 False 1558.55 3031 89.1890 718 3018 2 chr7A.!!$F2 2300
2 TraesCS7D01G345500 chr7A 495536519 495537486 967 False 612.15 1129 90.2205 3118 4142 2 chr7A.!!$F3 1024
3 TraesCS7D01G345500 chr5B 476451295 476453294 1999 False 2542.00 2542 89.8810 978 2954 1 chr5B.!!$F1 1976
4 TraesCS7D01G345500 chr7B 461200737 461204147 3410 False 1032.00 2209 91.9585 785 4142 4 chr7B.!!$F1 3357
5 TraesCS7D01G345500 chr5D 396429625 396431692 2067 False 1261.00 1890 89.9760 978 3119 2 chr5D.!!$F1 2141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 579 0.103572 TCGCTACCAAATAGGCCGTC 59.896 55.0 0.0 0.0 43.14 4.79 F
586 587 0.108329 AAATAGGCCGTCCGTGTCAG 60.108 55.0 0.0 0.0 37.47 3.51 F
918 1887 0.115152 TCTTCTCTCTGCCCACTCCA 59.885 55.0 0.0 0.0 0.00 3.86 F
2573 3827 0.033228 GGACCTGAGCATGGAGATCG 59.967 60.0 0.0 0.0 34.70 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 2462 0.550638 TACAACCCCGAATTCCCCCT 60.551 55.0 0.00 0.0 0.00 4.79 R
2573 3827 0.879765 TCGTCCTCTTTCTCGTCACC 59.120 55.0 0.00 0.0 0.00 4.02 R
2889 4163 0.539438 AAGCCTGGGCAAAATCGACA 60.539 50.0 14.39 0.0 44.88 4.35 R
3482 4969 0.251832 GGTGTGGACTCTGAGGAGGA 60.252 60.0 9.85 0.0 43.46 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.752274 TTTGAATTCACGAACAAAATTTGAAAG 57.248 25.926 13.19 5.30 30.34 2.62
33 34 8.472683 TGAATTCACGAACAAAATTTGAAAGT 57.527 26.923 13.19 5.90 30.34 2.66
34 35 9.574458 TGAATTCACGAACAAAATTTGAAAGTA 57.426 25.926 13.19 0.00 30.34 2.24
36 37 7.444558 TTCACGAACAAAATTTGAAAGTAGC 57.555 32.000 13.19 0.00 0.00 3.58
37 38 6.556212 TCACGAACAAAATTTGAAAGTAGCA 58.444 32.000 13.19 0.00 0.00 3.49
38 39 7.030165 TCACGAACAAAATTTGAAAGTAGCAA 58.970 30.769 13.19 0.00 0.00 3.91
39 40 7.008810 TCACGAACAAAATTTGAAAGTAGCAAC 59.991 33.333 13.19 0.00 0.00 4.17
40 41 6.809196 ACGAACAAAATTTGAAAGTAGCAACA 59.191 30.769 13.19 0.00 0.00 3.33
41 42 7.491048 ACGAACAAAATTTGAAAGTAGCAACAT 59.509 29.630 13.19 0.00 0.00 2.71
42 43 8.327429 CGAACAAAATTTGAAAGTAGCAACATT 58.673 29.630 13.19 0.00 0.00 2.71
43 44 9.986833 GAACAAAATTTGAAAGTAGCAACATTT 57.013 25.926 13.19 0.00 0.00 2.32
80 81 8.806177 TGAACATTTTCAGAATTTGTGATCAG 57.194 30.769 0.00 0.00 36.79 2.90
81 82 8.631797 TGAACATTTTCAGAATTTGTGATCAGA 58.368 29.630 0.00 0.00 36.79 3.27
82 83 9.467258 GAACATTTTCAGAATTTGTGATCAGAA 57.533 29.630 0.23 0.23 0.00 3.02
83 84 9.820725 AACATTTTCAGAATTTGTGATCAGAAA 57.179 25.926 19.14 19.14 31.74 2.52
84 85 9.820725 ACATTTTCAGAATTTGTGATCAGAAAA 57.179 25.926 20.49 16.80 41.83 2.29
98 99 9.322773 TGTGATCAGAAAATTAAATTGCAAACA 57.677 25.926 1.71 0.00 0.00 2.83
114 115 9.932207 AATTGCAAACAATATCTGAATTTCTGA 57.068 25.926 1.71 8.23 45.90 3.27
115 116 9.932207 ATTGCAAACAATATCTGAATTTCTGAA 57.068 25.926 1.71 0.00 44.78 3.02
116 117 8.746922 TGCAAACAATATCTGAATTTCTGAAC 57.253 30.769 9.65 0.00 0.00 3.18
117 118 8.358895 TGCAAACAATATCTGAATTTCTGAACA 58.641 29.630 9.65 2.70 0.00 3.18
118 119 9.195411 GCAAACAATATCTGAATTTCTGAACAA 57.805 29.630 9.65 0.91 0.00 2.83
202 203 7.715265 TGTTTTGTAAAAGAAGCAAACAACA 57.285 28.000 0.00 0.00 32.68 3.33
203 204 7.568433 TGTTTTGTAAAAGAAGCAAACAACAC 58.432 30.769 0.00 0.00 33.51 3.32
204 205 6.713792 TTTGTAAAAGAAGCAAACAACACC 57.286 33.333 0.00 0.00 30.28 4.16
205 206 5.652994 TGTAAAAGAAGCAAACAACACCT 57.347 34.783 0.00 0.00 0.00 4.00
206 207 5.406649 TGTAAAAGAAGCAAACAACACCTG 58.593 37.500 0.00 0.00 0.00 4.00
207 208 4.799564 AAAAGAAGCAAACAACACCTGA 57.200 36.364 0.00 0.00 0.00 3.86
208 209 4.799564 AAAGAAGCAAACAACACCTGAA 57.200 36.364 0.00 0.00 0.00 3.02
209 210 4.799564 AAGAAGCAAACAACACCTGAAA 57.200 36.364 0.00 0.00 0.00 2.69
210 211 5.343307 AAGAAGCAAACAACACCTGAAAT 57.657 34.783 0.00 0.00 0.00 2.17
211 212 5.343307 AGAAGCAAACAACACCTGAAATT 57.657 34.783 0.00 0.00 0.00 1.82
212 213 5.351458 AGAAGCAAACAACACCTGAAATTC 58.649 37.500 0.00 0.00 0.00 2.17
213 214 5.127682 AGAAGCAAACAACACCTGAAATTCT 59.872 36.000 0.00 0.00 0.00 2.40
214 215 5.343307 AGCAAACAACACCTGAAATTCTT 57.657 34.783 0.00 0.00 0.00 2.52
215 216 5.733676 AGCAAACAACACCTGAAATTCTTT 58.266 33.333 0.00 0.00 0.00 2.52
216 217 6.172630 AGCAAACAACACCTGAAATTCTTTT 58.827 32.000 0.00 0.00 0.00 2.27
217 218 6.654582 AGCAAACAACACCTGAAATTCTTTTT 59.345 30.769 0.00 0.00 0.00 1.94
250 251 8.768957 TCTGAACAAAATTTCAAACATGAACA 57.231 26.923 0.00 0.00 35.07 3.18
251 252 9.381033 TCTGAACAAAATTTCAAACATGAACAT 57.619 25.926 0.00 0.00 35.07 2.71
252 253 9.991388 CTGAACAAAATTTCAAACATGAACATT 57.009 25.926 0.00 0.00 35.07 2.71
285 286 8.755696 AAAGAATAAAATTTAGAACATGCGCA 57.244 26.923 14.96 14.96 0.00 6.09
286 287 7.740519 AGAATAAAATTTAGAACATGCGCAC 57.259 32.000 14.90 0.00 0.00 5.34
287 288 7.312154 AGAATAAAATTTAGAACATGCGCACA 58.688 30.769 14.90 0.00 0.00 4.57
288 289 7.975616 AGAATAAAATTTAGAACATGCGCACAT 59.024 29.630 14.90 0.00 36.79 3.21
289 290 8.477984 AATAAAATTTAGAACATGCGCACATT 57.522 26.923 14.90 10.54 32.87 2.71
290 291 6.783892 AAAATTTAGAACATGCGCACATTT 57.216 29.167 14.90 5.84 32.87 2.32
291 292 6.783892 AAATTTAGAACATGCGCACATTTT 57.216 29.167 14.90 8.06 32.87 1.82
292 293 5.766702 ATTTAGAACATGCGCACATTTTG 57.233 34.783 14.90 9.78 32.87 2.44
310 311 9.160576 CACATTTTGCAAAATTCTGTACATTTG 57.839 29.630 30.13 19.51 36.52 2.32
311 312 8.891720 ACATTTTGCAAAATTCTGTACATTTGT 58.108 25.926 30.13 20.07 36.52 2.83
312 313 9.719279 CATTTTGCAAAATTCTGTACATTTGTT 57.281 25.926 30.13 6.23 36.52 2.83
422 423 6.823286 AAAAGGGAGAAAATGAAAAAGGGA 57.177 33.333 0.00 0.00 0.00 4.20
423 424 6.823286 AAAGGGAGAAAATGAAAAAGGGAA 57.177 33.333 0.00 0.00 0.00 3.97
424 425 5.808366 AGGGAGAAAATGAAAAAGGGAAC 57.192 39.130 0.00 0.00 0.00 3.62
425 426 5.215845 AGGGAGAAAATGAAAAAGGGAACA 58.784 37.500 0.00 0.00 0.00 3.18
426 427 5.305386 AGGGAGAAAATGAAAAAGGGAACAG 59.695 40.000 0.00 0.00 0.00 3.16
427 428 5.304357 GGGAGAAAATGAAAAAGGGAACAGA 59.696 40.000 0.00 0.00 0.00 3.41
428 429 6.183360 GGGAGAAAATGAAAAAGGGAACAGAA 60.183 38.462 0.00 0.00 0.00 3.02
429 430 7.272244 GGAGAAAATGAAAAAGGGAACAGAAA 58.728 34.615 0.00 0.00 0.00 2.52
430 431 7.768582 GGAGAAAATGAAAAAGGGAACAGAAAA 59.231 33.333 0.00 0.00 0.00 2.29
431 432 9.161629 GAGAAAATGAAAAAGGGAACAGAAAAA 57.838 29.630 0.00 0.00 0.00 1.94
482 483 6.718522 AAAATTAGGAAAACCGGTTCAAGA 57.281 33.333 22.53 5.43 0.00 3.02
483 484 6.718522 AAATTAGGAAAACCGGTTCAAGAA 57.281 33.333 22.53 11.77 0.00 2.52
484 485 5.700722 ATTAGGAAAACCGGTTCAAGAAC 57.299 39.130 22.53 8.20 40.45 3.01
485 486 3.007473 AGGAAAACCGGTTCAAGAACA 57.993 42.857 22.53 0.00 42.85 3.18
486 487 3.562182 AGGAAAACCGGTTCAAGAACAT 58.438 40.909 22.53 0.00 42.85 2.71
487 488 3.958147 AGGAAAACCGGTTCAAGAACATT 59.042 39.130 22.53 8.44 42.85 2.71
488 489 4.404394 AGGAAAACCGGTTCAAGAACATTT 59.596 37.500 22.53 7.62 42.85 2.32
489 490 4.506288 GGAAAACCGGTTCAAGAACATTTG 59.494 41.667 22.53 2.88 42.85 2.32
490 491 4.729227 AAACCGGTTCAAGAACATTTGT 57.271 36.364 22.53 0.00 42.85 2.83
491 492 5.838531 AAACCGGTTCAAGAACATTTGTA 57.161 34.783 22.53 0.00 42.85 2.41
492 493 5.432885 AACCGGTTCAAGAACATTTGTAG 57.567 39.130 15.86 0.00 42.85 2.74
493 494 4.710324 ACCGGTTCAAGAACATTTGTAGA 58.290 39.130 0.00 0.00 42.85 2.59
494 495 5.127491 ACCGGTTCAAGAACATTTGTAGAA 58.873 37.500 0.00 0.00 42.85 2.10
495 496 5.238650 ACCGGTTCAAGAACATTTGTAGAAG 59.761 40.000 0.00 0.00 42.85 2.85
496 497 5.334879 CCGGTTCAAGAACATTTGTAGAAGG 60.335 44.000 14.25 0.00 42.85 3.46
497 498 5.238650 CGGTTCAAGAACATTTGTAGAAGGT 59.761 40.000 14.25 0.00 42.85 3.50
498 499 6.238648 CGGTTCAAGAACATTTGTAGAAGGTT 60.239 38.462 14.25 0.00 42.85 3.50
499 500 7.139392 GGTTCAAGAACATTTGTAGAAGGTTC 58.861 38.462 14.25 7.89 42.85 3.62
500 501 6.877611 TCAAGAACATTTGTAGAAGGTTCC 57.122 37.500 11.28 0.00 38.83 3.62
501 502 6.361433 TCAAGAACATTTGTAGAAGGTTCCA 58.639 36.000 11.28 0.00 38.83 3.53
502 503 6.831353 TCAAGAACATTTGTAGAAGGTTCCAA 59.169 34.615 11.28 0.00 38.83 3.53
503 504 7.340743 TCAAGAACATTTGTAGAAGGTTCCAAA 59.659 33.333 11.28 0.00 38.83 3.28
504 505 7.654022 AGAACATTTGTAGAAGGTTCCAAAA 57.346 32.000 11.28 0.00 38.83 2.44
505 506 7.489160 AGAACATTTGTAGAAGGTTCCAAAAC 58.511 34.615 11.28 0.00 38.83 2.43
517 518 4.649088 GTTCCAAAACCAGCTGTAAACT 57.351 40.909 13.81 0.00 0.00 2.66
518 519 5.006153 GTTCCAAAACCAGCTGTAAACTT 57.994 39.130 13.81 0.00 0.00 2.66
519 520 4.911514 TCCAAAACCAGCTGTAAACTTC 57.088 40.909 13.81 0.00 0.00 3.01
520 521 3.634910 TCCAAAACCAGCTGTAAACTTCC 59.365 43.478 13.81 0.00 0.00 3.46
521 522 3.383185 CCAAAACCAGCTGTAAACTTCCA 59.617 43.478 13.81 0.00 0.00 3.53
522 523 4.499696 CCAAAACCAGCTGTAAACTTCCAG 60.500 45.833 13.81 0.00 0.00 3.86
523 524 3.857157 AACCAGCTGTAAACTTCCAGA 57.143 42.857 13.81 0.00 0.00 3.86
524 525 3.857157 ACCAGCTGTAAACTTCCAGAA 57.143 42.857 13.81 0.00 0.00 3.02
525 526 3.744660 ACCAGCTGTAAACTTCCAGAAG 58.255 45.455 13.81 5.85 43.79 2.85
526 527 3.077359 CCAGCTGTAAACTTCCAGAAGG 58.923 50.000 13.81 0.00 42.53 3.46
527 528 3.496870 CCAGCTGTAAACTTCCAGAAGGT 60.497 47.826 13.81 1.97 42.53 3.50
529 530 4.580580 CAGCTGTAAACTTCCAGAAGGTTT 59.419 41.667 15.42 12.48 45.33 3.27
530 531 4.822350 AGCTGTAAACTTCCAGAAGGTTTC 59.178 41.667 15.42 11.20 45.33 2.78
531 532 4.023107 GCTGTAAACTTCCAGAAGGTTTCC 60.023 45.833 15.42 7.98 45.33 3.13
532 533 5.118729 TGTAAACTTCCAGAAGGTTTCCA 57.881 39.130 15.42 10.19 45.33 3.53
533 534 5.130350 TGTAAACTTCCAGAAGGTTTCCAG 58.870 41.667 15.42 0.00 45.33 3.86
534 535 4.519906 AAACTTCCAGAAGGTTTCCAGA 57.480 40.909 11.87 0.00 45.33 3.86
535 536 4.519906 AACTTCCAGAAGGTTTCCAGAA 57.480 40.909 11.87 0.00 42.53 3.02
536 537 4.519906 ACTTCCAGAAGGTTTCCAGAAA 57.480 40.909 11.87 0.00 42.53 2.52
537 538 5.066913 ACTTCCAGAAGGTTTCCAGAAAT 57.933 39.130 11.87 0.00 42.53 2.17
538 539 4.829492 ACTTCCAGAAGGTTTCCAGAAATG 59.171 41.667 11.87 0.00 42.53 2.32
539 540 3.766545 TCCAGAAGGTTTCCAGAAATGG 58.233 45.455 0.00 0.33 35.89 3.16
540 541 2.827921 CCAGAAGGTTTCCAGAAATGGG 59.172 50.000 0.00 0.00 32.36 4.00
541 542 3.500289 CCAGAAGGTTTCCAGAAATGGGA 60.500 47.826 0.00 0.00 32.36 4.37
542 543 4.347607 CAGAAGGTTTCCAGAAATGGGAT 58.652 43.478 0.00 0.00 33.63 3.85
543 544 4.400567 CAGAAGGTTTCCAGAAATGGGATC 59.599 45.833 0.00 0.00 33.63 3.36
544 545 4.293368 AGAAGGTTTCCAGAAATGGGATCT 59.707 41.667 0.00 0.00 33.63 2.75
545 546 3.973425 AGGTTTCCAGAAATGGGATCTG 58.027 45.455 0.00 0.00 43.15 2.90
546 547 3.334881 AGGTTTCCAGAAATGGGATCTGT 59.665 43.478 0.00 0.00 42.19 3.41
547 548 3.445096 GGTTTCCAGAAATGGGATCTGTG 59.555 47.826 0.00 0.00 42.19 3.66
548 549 3.370840 TTCCAGAAATGGGATCTGTGG 57.629 47.619 3.18 0.00 42.19 4.17
549 550 2.561187 TCCAGAAATGGGATCTGTGGA 58.439 47.619 3.18 0.00 42.19 4.02
550 551 2.918934 TCCAGAAATGGGATCTGTGGAA 59.081 45.455 3.18 0.00 42.19 3.53
551 552 3.019564 CCAGAAATGGGATCTGTGGAAC 58.980 50.000 3.18 0.00 42.19 3.62
552 553 2.679837 CAGAAATGGGATCTGTGGAACG 59.320 50.000 0.00 0.00 42.39 3.95
553 554 1.401905 GAAATGGGATCTGTGGAACGC 59.598 52.381 0.00 0.00 42.39 4.84
554 555 0.744414 AATGGGATCTGTGGAACGCG 60.744 55.000 3.53 3.53 45.01 6.01
555 556 3.195698 GGGATCTGTGGAACGCGC 61.196 66.667 5.73 0.00 45.01 6.86
556 557 3.554692 GGATCTGTGGAACGCGCG 61.555 66.667 30.96 30.96 45.01 6.86
557 558 4.210304 GATCTGTGGAACGCGCGC 62.210 66.667 32.58 23.91 45.01 6.86
573 574 2.900528 CGCCTCGCTACCAAATAGG 58.099 57.895 0.00 0.00 45.67 2.57
574 575 2.618165 GCCTCGCTACCAAATAGGC 58.382 57.895 0.00 0.00 45.37 3.93
575 576 0.885150 GCCTCGCTACCAAATAGGCC 60.885 60.000 0.00 0.00 45.69 5.19
576 577 0.600255 CCTCGCTACCAAATAGGCCG 60.600 60.000 0.00 0.00 43.14 6.13
577 578 0.104304 CTCGCTACCAAATAGGCCGT 59.896 55.000 0.00 0.00 43.14 5.68
578 579 0.103572 TCGCTACCAAATAGGCCGTC 59.896 55.000 0.00 0.00 43.14 4.79
579 580 0.878961 CGCTACCAAATAGGCCGTCC 60.879 60.000 0.00 0.00 43.14 4.79
580 581 0.878961 GCTACCAAATAGGCCGTCCG 60.879 60.000 0.00 0.00 43.14 4.79
581 582 0.462789 CTACCAAATAGGCCGTCCGT 59.537 55.000 0.00 0.00 43.14 4.69
582 583 0.176219 TACCAAATAGGCCGTCCGTG 59.824 55.000 0.00 0.00 43.14 4.94
583 584 1.078708 CCAAATAGGCCGTCCGTGT 60.079 57.895 0.00 0.00 37.47 4.49
584 585 1.087771 CCAAATAGGCCGTCCGTGTC 61.088 60.000 0.00 0.00 37.47 3.67
585 586 0.390603 CAAATAGGCCGTCCGTGTCA 60.391 55.000 0.00 0.00 37.47 3.58
586 587 0.108329 AAATAGGCCGTCCGTGTCAG 60.108 55.000 0.00 0.00 37.47 3.51
587 588 1.255667 AATAGGCCGTCCGTGTCAGT 61.256 55.000 0.00 0.00 37.47 3.41
588 589 1.945354 ATAGGCCGTCCGTGTCAGTG 61.945 60.000 0.00 0.00 37.47 3.66
590 591 3.986006 GCCGTCCGTGTCAGTGGA 61.986 66.667 0.00 0.00 0.00 4.02
591 592 2.970639 CCGTCCGTGTCAGTGGAT 59.029 61.111 0.00 0.00 36.48 3.41
592 593 1.153823 CCGTCCGTGTCAGTGGATC 60.154 63.158 0.00 0.00 36.48 3.36
593 594 1.514228 CGTCCGTGTCAGTGGATCG 60.514 63.158 0.00 0.98 36.48 3.69
594 595 1.153823 GTCCGTGTCAGTGGATCGG 60.154 63.158 12.21 12.21 41.43 4.18
595 596 1.605451 TCCGTGTCAGTGGATCGGT 60.605 57.895 15.92 0.00 41.11 4.69
596 597 1.183030 TCCGTGTCAGTGGATCGGTT 61.183 55.000 15.92 0.00 41.11 4.44
597 598 0.736325 CCGTGTCAGTGGATCGGTTC 60.736 60.000 10.85 0.00 38.04 3.62
598 599 1.071019 CGTGTCAGTGGATCGGTTCG 61.071 60.000 0.00 0.00 0.00 3.95
599 600 0.242825 GTGTCAGTGGATCGGTTCGA 59.757 55.000 0.00 0.00 41.13 3.71
601 602 1.548719 TGTCAGTGGATCGGTTCGATT 59.451 47.619 4.28 0.00 47.00 3.34
602 603 1.927174 GTCAGTGGATCGGTTCGATTG 59.073 52.381 4.28 0.00 47.00 2.67
603 604 0.652592 CAGTGGATCGGTTCGATTGC 59.347 55.000 4.28 0.00 47.00 3.56
604 605 0.249120 AGTGGATCGGTTCGATTGCA 59.751 50.000 4.28 0.00 47.00 4.08
605 606 1.134401 AGTGGATCGGTTCGATTGCAT 60.134 47.619 4.28 0.00 47.00 3.96
606 607 1.003545 GTGGATCGGTTCGATTGCATG 60.004 52.381 4.28 0.00 47.00 4.06
607 608 1.299541 GGATCGGTTCGATTGCATGT 58.700 50.000 4.28 0.00 47.00 3.21
608 609 1.003545 GGATCGGTTCGATTGCATGTG 60.004 52.381 4.28 0.00 47.00 3.21
609 610 1.665679 GATCGGTTCGATTGCATGTGT 59.334 47.619 4.28 0.00 47.00 3.72
610 611 0.795698 TCGGTTCGATTGCATGTGTG 59.204 50.000 0.00 0.00 0.00 3.82
611 612 0.179192 CGGTTCGATTGCATGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
612 613 0.456653 GGTTCGATTGCATGTGTGGC 60.457 55.000 0.00 0.00 0.00 5.01
613 614 0.794229 GTTCGATTGCATGTGTGGCG 60.794 55.000 0.00 0.00 0.00 5.69
614 615 2.526091 TTCGATTGCATGTGTGGCGC 62.526 55.000 0.00 0.00 0.00 6.53
615 616 2.202650 GATTGCATGTGTGGCGCC 60.203 61.111 22.73 22.73 0.00 6.53
616 617 3.704908 GATTGCATGTGTGGCGCCC 62.705 63.158 26.77 16.24 0.00 6.13
623 624 4.778143 GTGTGGCGCCCCGAGAAT 62.778 66.667 26.77 0.00 0.00 2.40
624 625 4.028490 TGTGGCGCCCCGAGAATT 62.028 61.111 26.77 0.00 0.00 2.17
625 626 2.750237 GTGGCGCCCCGAGAATTT 60.750 61.111 26.77 0.00 0.00 1.82
626 627 2.749839 TGGCGCCCCGAGAATTTG 60.750 61.111 26.77 0.00 0.00 2.32
627 628 2.437716 GGCGCCCCGAGAATTTGA 60.438 61.111 18.11 0.00 0.00 2.69
628 629 2.761195 GGCGCCCCGAGAATTTGAC 61.761 63.158 18.11 0.00 0.00 3.18
629 630 3.089784 CGCCCCGAGAATTTGACG 58.910 61.111 0.00 0.00 0.00 4.35
630 631 1.740296 CGCCCCGAGAATTTGACGT 60.740 57.895 0.00 0.00 0.00 4.34
631 632 0.458889 CGCCCCGAGAATTTGACGTA 60.459 55.000 0.00 0.00 0.00 3.57
632 633 1.729284 GCCCCGAGAATTTGACGTAA 58.271 50.000 0.00 0.00 0.00 3.18
633 634 2.078392 GCCCCGAGAATTTGACGTAAA 58.922 47.619 0.00 0.00 0.00 2.01
634 635 2.485038 GCCCCGAGAATTTGACGTAAAA 59.515 45.455 0.00 0.00 0.00 1.52
635 636 3.128068 GCCCCGAGAATTTGACGTAAAAT 59.872 43.478 4.95 4.95 0.00 1.82
636 637 4.380128 GCCCCGAGAATTTGACGTAAAATT 60.380 41.667 21.23 21.23 41.34 1.82
665 666 9.696572 AATAAGTTAAATAGGGTTTTCCTCTCC 57.303 33.333 0.00 0.00 44.06 3.71
666 667 5.742063 AGTTAAATAGGGTTTTCCTCTCCG 58.258 41.667 0.00 0.00 44.06 4.63
667 668 3.646736 AAATAGGGTTTTCCTCTCCGG 57.353 47.619 0.00 0.00 44.06 5.14
668 669 0.837940 ATAGGGTTTTCCTCTCCGGC 59.162 55.000 0.00 0.00 44.06 6.13
669 670 1.269703 TAGGGTTTTCCTCTCCGGCC 61.270 60.000 0.00 0.00 44.06 6.13
670 671 2.045242 GGTTTTCCTCTCCGGCCC 60.045 66.667 0.00 0.00 36.94 5.80
671 672 2.603652 GGTTTTCCTCTCCGGCCCT 61.604 63.158 0.00 0.00 36.94 5.19
672 673 1.078356 GTTTTCCTCTCCGGCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
673 674 1.229529 TTTTCCTCTCCGGCCCTCT 60.230 57.895 0.00 0.00 0.00 3.69
674 675 1.265454 TTTTCCTCTCCGGCCCTCTC 61.265 60.000 0.00 0.00 0.00 3.20
675 676 4.507916 TCCTCTCCGGCCCTCTCG 62.508 72.222 0.00 0.00 0.00 4.04
676 677 4.824515 CCTCTCCGGCCCTCTCGT 62.825 72.222 0.00 0.00 0.00 4.18
677 678 2.756283 CTCTCCGGCCCTCTCGTT 60.756 66.667 0.00 0.00 0.00 3.85
678 679 2.754658 TCTCCGGCCCTCTCGTTC 60.755 66.667 0.00 0.00 0.00 3.95
679 680 3.068691 CTCCGGCCCTCTCGTTCA 61.069 66.667 0.00 0.00 0.00 3.18
680 681 2.602267 TCCGGCCCTCTCGTTCAA 60.602 61.111 0.00 0.00 0.00 2.69
681 682 2.167398 CTCCGGCCCTCTCGTTCAAA 62.167 60.000 0.00 0.00 0.00 2.69
682 683 1.302192 CCGGCCCTCTCGTTCAAAA 60.302 57.895 0.00 0.00 0.00 2.44
683 684 1.298859 CCGGCCCTCTCGTTCAAAAG 61.299 60.000 0.00 0.00 0.00 2.27
684 685 0.320421 CGGCCCTCTCGTTCAAAAGA 60.320 55.000 0.00 0.00 0.00 2.52
685 686 1.876416 CGGCCCTCTCGTTCAAAAGAA 60.876 52.381 0.00 0.00 0.00 2.52
686 687 2.227194 GGCCCTCTCGTTCAAAAGAAA 58.773 47.619 0.00 0.00 0.00 2.52
687 688 2.621526 GGCCCTCTCGTTCAAAAGAAAA 59.378 45.455 0.00 0.00 0.00 2.29
688 689 3.550233 GGCCCTCTCGTTCAAAAGAAAAC 60.550 47.826 0.00 0.00 0.00 2.43
689 690 3.066203 GCCCTCTCGTTCAAAAGAAAACA 59.934 43.478 0.00 0.00 0.00 2.83
690 691 4.789802 GCCCTCTCGTTCAAAAGAAAACAG 60.790 45.833 0.00 0.00 0.00 3.16
691 692 4.574828 CCCTCTCGTTCAAAAGAAAACAGA 59.425 41.667 0.00 0.00 0.00 3.41
692 693 5.065988 CCCTCTCGTTCAAAAGAAAACAGAA 59.934 40.000 0.00 0.00 0.00 3.02
693 694 6.404293 CCCTCTCGTTCAAAAGAAAACAGAAA 60.404 38.462 0.00 0.00 0.00 2.52
694 695 7.027161 CCTCTCGTTCAAAAGAAAACAGAAAA 58.973 34.615 0.00 0.00 0.00 2.29
695 696 7.008357 CCTCTCGTTCAAAAGAAAACAGAAAAC 59.992 37.037 0.00 0.00 0.00 2.43
696 697 7.364200 TCTCGTTCAAAAGAAAACAGAAAACA 58.636 30.769 0.00 0.00 0.00 2.83
697 698 8.026607 TCTCGTTCAAAAGAAAACAGAAAACAT 58.973 29.630 0.00 0.00 0.00 2.71
698 699 8.168681 TCGTTCAAAAGAAAACAGAAAACATC 57.831 30.769 0.00 0.00 0.00 3.06
699 700 7.810282 TCGTTCAAAAGAAAACAGAAAACATCA 59.190 29.630 0.00 0.00 0.00 3.07
700 701 8.594687 CGTTCAAAAGAAAACAGAAAACATCAT 58.405 29.630 0.00 0.00 0.00 2.45
701 702 9.906111 GTTCAAAAGAAAACAGAAAACATCATC 57.094 29.630 0.00 0.00 0.00 2.92
702 703 8.647143 TCAAAAGAAAACAGAAAACATCATCC 57.353 30.769 0.00 0.00 0.00 3.51
703 704 8.477256 TCAAAAGAAAACAGAAAACATCATCCT 58.523 29.630 0.00 0.00 0.00 3.24
704 705 9.101655 CAAAAGAAAACAGAAAACATCATCCTT 57.898 29.630 0.00 0.00 0.00 3.36
705 706 9.671279 AAAAGAAAACAGAAAACATCATCCTTT 57.329 25.926 0.00 0.00 0.00 3.11
706 707 9.671279 AAAGAAAACAGAAAACATCATCCTTTT 57.329 25.926 0.00 0.00 0.00 2.27
707 708 9.671279 AAGAAAACAGAAAACATCATCCTTTTT 57.329 25.926 0.00 0.00 0.00 1.94
755 756 0.524862 GCTGTCCAAATGAGCACCAG 59.475 55.000 0.00 0.00 32.70 4.00
757 758 0.895100 TGTCCAAATGAGCACCAGGC 60.895 55.000 0.00 0.00 45.30 4.85
772 773 5.422145 GCACCAGGCTGAAATGAAATAAAT 58.578 37.500 17.94 0.00 40.25 1.40
774 775 6.183360 GCACCAGGCTGAAATGAAATAAATTG 60.183 38.462 17.94 0.00 40.25 2.32
775 776 7.098477 CACCAGGCTGAAATGAAATAAATTGA 58.902 34.615 17.94 0.00 0.00 2.57
776 777 7.767198 CACCAGGCTGAAATGAAATAAATTGAT 59.233 33.333 17.94 0.00 0.00 2.57
842 1801 0.742990 TGCCGGCCTGTTTCGATTAG 60.743 55.000 26.77 0.00 0.00 1.73
848 1816 4.334481 CCGGCCTGTTTCGATTAGTTAAAT 59.666 41.667 0.00 0.00 0.00 1.40
918 1887 0.115152 TCTTCTCTCTGCCCACTCCA 59.885 55.000 0.00 0.00 0.00 3.86
974 1943 3.626596 AGGCCTCCTCCTCCCCAA 61.627 66.667 0.00 0.00 0.00 4.12
1036 2015 4.314440 AGAAGAAGCGCCACGGCA 62.314 61.111 2.29 0.00 42.06 5.69
1314 2293 2.283966 CACCCCCTCTCCTCACGT 60.284 66.667 0.00 0.00 0.00 4.49
1329 2308 1.000506 TCACGTCTCAAGGTACAAGGC 59.999 52.381 0.00 0.00 0.00 4.35
1437 2422 2.543848 TCTGTTTTCTACTGTGCTTGCG 59.456 45.455 0.00 0.00 0.00 4.85
1461 2446 5.095145 TGCAATAGACTGCTCAGAGATTT 57.905 39.130 0.00 0.00 43.07 2.17
1532 2518 9.803315 CTCATTTAGCTGAACTTAGTATGTGTA 57.197 33.333 0.00 0.00 0.00 2.90
1592 2823 7.313646 TGAGTTAGCAAGTTCTACATAGTGAC 58.686 38.462 0.00 0.00 0.00 3.67
1598 2829 5.926542 GCAAGTTCTACATAGTGACTGTTCA 59.073 40.000 0.00 0.00 0.00 3.18
1603 2834 5.880341 TCTACATAGTGACTGTTCATGTCG 58.120 41.667 2.26 0.00 37.26 4.35
1612 2843 1.273606 CTGTTCATGTCGACCCAGAGT 59.726 52.381 14.12 0.00 0.00 3.24
1644 2879 1.448985 TGTATGAGGGAGTTTTGCGC 58.551 50.000 0.00 0.00 0.00 6.09
1650 2892 0.321653 AGGGAGTTTTGCGCCTACAG 60.322 55.000 4.18 0.00 37.22 2.74
1757 3006 8.777578 ACTGTATGACTGGTCACCTAATATAA 57.222 34.615 5.52 0.00 43.11 0.98
1897 3146 1.701847 CTGATGACTATGGGAAGGGGG 59.298 57.143 0.00 0.00 0.00 5.40
1959 3209 6.878389 ACTCTCTTTCATGAATCTTCAGTTCC 59.122 38.462 9.40 0.00 41.08 3.62
1961 3211 6.877855 TCTCTTTCATGAATCTTCAGTTCCAG 59.122 38.462 9.40 0.00 41.08 3.86
1984 3236 8.121708 CCAGTTTGAACCAAATGTTTGTTAATG 58.878 33.333 4.92 0.00 37.29 1.90
2068 3322 5.763698 TGATCTTCCGTACTTCGATATCTGT 59.236 40.000 0.34 0.19 42.86 3.41
2215 3469 0.456995 GAGACACTCTGTACTGCCGC 60.457 60.000 0.00 0.00 0.00 6.53
2573 3827 0.033228 GGACCTGAGCATGGAGATCG 59.967 60.000 0.00 0.00 34.70 3.69
2653 3913 5.970592 AGCTTCAAAGAAAAGATTATGGGC 58.029 37.500 0.00 0.00 0.00 5.36
2758 4018 7.946207 TCAACAAAGCAGGTATACATTTTTCA 58.054 30.769 5.01 0.00 0.00 2.69
2875 4149 4.802999 TCTATGTGATATTGCGCTCTGAG 58.197 43.478 9.73 0.00 0.00 3.35
2886 4160 6.630444 ATTGCGCTCTGAGATATTTTTGAT 57.370 33.333 9.73 0.00 0.00 2.57
2889 4163 6.283694 TGCGCTCTGAGATATTTTTGATACT 58.716 36.000 9.73 0.00 0.00 2.12
2903 4177 3.342377 TGATACTGTCGATTTTGCCCA 57.658 42.857 0.00 0.00 0.00 5.36
2904 4178 3.270027 TGATACTGTCGATTTTGCCCAG 58.730 45.455 0.00 0.00 0.00 4.45
2928 4205 7.708752 CAGGCTTTAGAGAAGTCGAATAATTCT 59.291 37.037 0.00 0.00 36.02 2.40
2930 4207 9.187455 GGCTTTAGAGAAGTCGAATAATTCTAG 57.813 37.037 0.00 0.00 33.53 2.43
2955 4232 4.712122 AAGATGTTCAAACGGTGTTGTT 57.288 36.364 0.00 0.00 0.00 2.83
2997 4276 8.090214 GCATTTGTATGGTTTGATATTATGCCT 58.910 33.333 0.00 0.00 32.15 4.75
3014 4296 1.542108 GCCTCTGTTGAGTGTGAAGCT 60.542 52.381 0.00 0.00 38.61 3.74
3018 4300 4.322273 CCTCTGTTGAGTGTGAAGCTGATA 60.322 45.833 0.00 0.00 38.61 2.15
3019 4301 4.814147 TCTGTTGAGTGTGAAGCTGATAG 58.186 43.478 0.00 0.00 0.00 2.08
3024 4306 4.752146 TGAGTGTGAAGCTGATAGATGTG 58.248 43.478 0.00 0.00 0.00 3.21
3028 4310 4.931601 GTGTGAAGCTGATAGATGTGTTGA 59.068 41.667 0.00 0.00 0.00 3.18
3029 4311 4.931601 TGTGAAGCTGATAGATGTGTTGAC 59.068 41.667 0.00 0.00 0.00 3.18
3035 4317 5.641209 AGCTGATAGATGTGTTGACTGTTTC 59.359 40.000 0.00 0.00 0.00 2.78
3037 4319 4.929211 TGATAGATGTGTTGACTGTTTCGG 59.071 41.667 0.00 0.00 0.00 4.30
3073 4548 5.699839 CAGGTTTAGTTGCCATTTCAGTAC 58.300 41.667 0.00 0.00 0.00 2.73
3105 4580 7.239166 TCAGAATCGAGCTGAATTATCAAAC 57.761 36.000 15.89 0.00 39.29 2.93
3126 4607 0.613260 TCTCGTTTGCTAGGTGCCAT 59.387 50.000 0.00 0.00 42.00 4.40
3134 4615 1.005805 TGCTAGGTGCCATGGTCATTT 59.994 47.619 14.67 7.03 42.00 2.32
3135 4616 2.240921 TGCTAGGTGCCATGGTCATTTA 59.759 45.455 14.67 7.72 42.00 1.40
3137 4618 1.767759 AGGTGCCATGGTCATTTAGC 58.232 50.000 14.67 3.32 0.00 3.09
3138 4619 1.005805 AGGTGCCATGGTCATTTAGCA 59.994 47.619 14.67 0.00 40.55 3.49
3157 4640 0.951558 ATGACACGTGGGCAAAAGAC 59.048 50.000 21.57 0.46 0.00 3.01
3205 4688 4.065321 AGTCGAAGCAATAATGGAGGAG 57.935 45.455 0.00 0.00 0.00 3.69
3227 4710 1.515020 CTCTCCTCCCAGTCTTGCG 59.485 63.158 0.00 0.00 0.00 4.85
3274 4757 1.739562 GCCACGTCTTGCCTCTCAG 60.740 63.158 0.00 0.00 0.00 3.35
3275 4758 1.079543 CCACGTCTTGCCTCTCAGG 60.080 63.158 0.00 0.00 38.80 3.86
3290 4773 4.160065 CCTCTCAGGCAGGATATACATCAG 59.840 50.000 0.00 0.00 31.91 2.90
3291 4774 4.745351 TCTCAGGCAGGATATACATCAGT 58.255 43.478 0.00 0.00 32.32 3.41
3299 4782 5.417811 CAGGATATACATCAGTCATGCTCC 58.582 45.833 0.00 0.00 35.65 4.70
3474 4961 1.216710 GGAGAACCTGGAGTCGCTG 59.783 63.158 0.00 0.00 0.00 5.18
3502 4989 1.599606 CCTCCTCAGAGTCCACACCG 61.600 65.000 0.00 0.00 38.58 4.94
3516 5003 4.719106 ACCGTCGTCGAGGAGGCT 62.719 66.667 19.45 6.11 39.71 4.58
3582 5069 1.371881 GCTCGCGGAGGCTATGTAC 60.372 63.158 6.13 0.00 36.88 2.90
3584 5071 2.050351 CGCGGAGGCTATGTACCG 60.050 66.667 7.18 7.18 46.74 4.02
3613 5100 3.660571 CCCTGGACACCCATGGCA 61.661 66.667 6.09 0.00 40.58 4.92
3635 5122 2.279120 GGAGCAGATCGGAGCACG 60.279 66.667 9.84 0.00 46.11 5.34
3658 5145 3.073735 AGGTGAGCGGCTCCTCAG 61.074 66.667 26.00 0.00 42.14 3.35
3676 5163 4.443175 CCTCAGACTCCATGGATTTCAGAG 60.443 50.000 25.02 25.02 0.00 3.35
3678 5165 3.199508 CAGACTCCATGGATTTCAGAGGT 59.800 47.826 16.63 6.82 0.00 3.85
3682 5169 3.950395 CTCCATGGATTTCAGAGGTTTCC 59.050 47.826 16.63 0.00 0.00 3.13
3683 5170 3.333381 TCCATGGATTTCAGAGGTTTCCA 59.667 43.478 11.44 0.00 40.54 3.53
3691 5178 3.616956 TCAGAGGTTTCCATAGCACAG 57.383 47.619 0.00 0.00 0.00 3.66
3700 5187 1.747745 CATAGCACAGCTGCCAGCA 60.748 57.895 20.53 12.58 45.56 4.41
3733 5220 1.516892 GCACTGAGAGCTCTGGAGG 59.483 63.158 23.91 9.28 33.52 4.30
3837 5324 5.277974 CCTTCACATCGACAACTTCATGTTT 60.278 40.000 0.00 0.00 36.63 2.83
4037 5524 1.335415 CGACGGATGCGAGATTCAGAT 60.335 52.381 15.49 0.00 0.00 2.90
4048 5535 3.304257 GAGATTCAGATGATCGACCGTG 58.696 50.000 0.00 0.00 0.00 4.94
4057 5544 0.108520 GATCGACCGTGGCAGGTTTA 60.109 55.000 6.43 1.13 46.09 2.01
4060 5547 1.012486 CGACCGTGGCAGGTTTACTC 61.012 60.000 6.43 0.00 46.09 2.59
4063 5550 0.391263 CCGTGGCAGGTTTACTCCTC 60.391 60.000 6.43 0.00 35.37 3.71
4064 5551 0.391263 CGTGGCAGGTTTACTCCTCC 60.391 60.000 0.00 0.00 35.37 4.30
4065 5552 0.984995 GTGGCAGGTTTACTCCTCCT 59.015 55.000 0.00 0.00 35.37 3.69
4066 5553 1.066071 GTGGCAGGTTTACTCCTCCTC 60.066 57.143 0.00 0.00 35.37 3.71
4135 5622 0.036388 GGAATGGCACGAGTTCCTCA 60.036 55.000 9.78 0.00 38.65 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.752274 CTTTCAAATTTTGTTCGTGAATTCAAA 57.248 25.926 10.35 0.00 0.00 2.69
7 8 8.930760 ACTTTCAAATTTTGTTCGTGAATTCAA 58.069 25.926 10.35 0.00 0.00 2.69
8 9 8.472683 ACTTTCAAATTTTGTTCGTGAATTCA 57.527 26.923 3.38 3.38 0.00 2.57
10 11 8.539674 GCTACTTTCAAATTTTGTTCGTGAATT 58.460 29.630 8.89 0.00 0.00 2.17
11 12 7.704472 TGCTACTTTCAAATTTTGTTCGTGAAT 59.296 29.630 8.89 0.00 0.00 2.57
12 13 7.030165 TGCTACTTTCAAATTTTGTTCGTGAA 58.970 30.769 8.89 0.00 0.00 3.18
13 14 6.556212 TGCTACTTTCAAATTTTGTTCGTGA 58.444 32.000 8.89 0.00 0.00 4.35
14 15 6.804534 TGCTACTTTCAAATTTTGTTCGTG 57.195 33.333 8.89 0.56 0.00 4.35
15 16 6.809196 TGTTGCTACTTTCAAATTTTGTTCGT 59.191 30.769 8.89 6.99 0.00 3.85
16 17 7.215696 TGTTGCTACTTTCAAATTTTGTTCG 57.784 32.000 8.89 1.96 0.00 3.95
17 18 9.986833 AAATGTTGCTACTTTCAAATTTTGTTC 57.013 25.926 8.89 0.00 0.00 3.18
55 56 8.631797 TCTGATCACAAATTCTGAAAATGTTCA 58.368 29.630 0.00 0.00 41.57 3.18
56 57 9.467258 TTCTGATCACAAATTCTGAAAATGTTC 57.533 29.630 8.24 6.32 30.08 3.18
57 58 9.820725 TTTCTGATCACAAATTCTGAAAATGTT 57.179 25.926 8.24 0.00 37.07 2.71
58 59 9.820725 TTTTCTGATCACAAATTCTGAAAATGT 57.179 25.926 9.78 0.00 41.12 2.71
72 73 9.322773 TGTTTGCAATTTAATTTTCTGATCACA 57.677 25.926 0.00 0.00 0.00 3.58
88 89 9.932207 TCAGAAATTCAGATATTGTTTGCAATT 57.068 25.926 0.00 0.00 42.19 2.32
89 90 9.932207 TTCAGAAATTCAGATATTGTTTGCAAT 57.068 25.926 0.00 0.00 46.14 3.56
90 91 9.195411 GTTCAGAAATTCAGATATTGTTTGCAA 57.805 29.630 0.00 0.00 39.16 4.08
91 92 8.358895 TGTTCAGAAATTCAGATATTGTTTGCA 58.641 29.630 0.00 0.00 0.00 4.08
92 93 8.746922 TGTTCAGAAATTCAGATATTGTTTGC 57.253 30.769 0.00 0.00 0.00 3.68
176 177 9.424319 TGTTGTTTGCTTCTTTTACAAAACATA 57.576 25.926 0.00 0.00 35.25 2.29
177 178 8.227119 GTGTTGTTTGCTTCTTTTACAAAACAT 58.773 29.630 0.00 0.00 37.07 2.71
178 179 7.307455 GGTGTTGTTTGCTTCTTTTACAAAACA 60.307 33.333 0.00 0.00 38.22 2.83
179 180 7.012943 GGTGTTGTTTGCTTCTTTTACAAAAC 58.987 34.615 0.00 0.00 36.61 2.43
180 181 6.931840 AGGTGTTGTTTGCTTCTTTTACAAAA 59.068 30.769 0.00 0.00 35.25 2.44
181 182 6.367422 CAGGTGTTGTTTGCTTCTTTTACAAA 59.633 34.615 0.00 0.00 31.29 2.83
182 183 5.866633 CAGGTGTTGTTTGCTTCTTTTACAA 59.133 36.000 0.00 0.00 0.00 2.41
183 184 5.184096 TCAGGTGTTGTTTGCTTCTTTTACA 59.816 36.000 0.00 0.00 0.00 2.41
184 185 5.646606 TCAGGTGTTGTTTGCTTCTTTTAC 58.353 37.500 0.00 0.00 0.00 2.01
185 186 5.906113 TCAGGTGTTGTTTGCTTCTTTTA 57.094 34.783 0.00 0.00 0.00 1.52
186 187 4.799564 TCAGGTGTTGTTTGCTTCTTTT 57.200 36.364 0.00 0.00 0.00 2.27
187 188 4.799564 TTCAGGTGTTGTTTGCTTCTTT 57.200 36.364 0.00 0.00 0.00 2.52
188 189 4.799564 TTTCAGGTGTTGTTTGCTTCTT 57.200 36.364 0.00 0.00 0.00 2.52
189 190 5.127682 AGAATTTCAGGTGTTGTTTGCTTCT 59.872 36.000 0.00 0.00 0.00 2.85
190 191 5.351458 AGAATTTCAGGTGTTGTTTGCTTC 58.649 37.500 0.00 0.00 0.00 3.86
191 192 5.343307 AGAATTTCAGGTGTTGTTTGCTT 57.657 34.783 0.00 0.00 0.00 3.91
192 193 5.343307 AAGAATTTCAGGTGTTGTTTGCT 57.657 34.783 0.00 0.00 0.00 3.91
193 194 6.421377 AAAAGAATTTCAGGTGTTGTTTGC 57.579 33.333 0.00 0.00 37.28 3.68
224 225 9.212641 TGTTCATGTTTGAAATTTTGTTCAGAA 57.787 25.926 0.00 0.00 43.29 3.02
225 226 8.768957 TGTTCATGTTTGAAATTTTGTTCAGA 57.231 26.923 0.00 0.00 43.29 3.27
226 227 9.991388 AATGTTCATGTTTGAAATTTTGTTCAG 57.009 25.926 0.00 0.00 43.29 3.02
259 260 9.202273 TGCGCATGTTCTAAATTTTATTCTTTT 57.798 25.926 5.66 0.00 0.00 2.27
260 261 8.647226 GTGCGCATGTTCTAAATTTTATTCTTT 58.353 29.630 15.91 0.00 0.00 2.52
261 262 7.812191 TGTGCGCATGTTCTAAATTTTATTCTT 59.188 29.630 15.91 0.00 0.00 2.52
262 263 7.312154 TGTGCGCATGTTCTAAATTTTATTCT 58.688 30.769 15.91 0.00 0.00 2.40
263 264 7.504922 TGTGCGCATGTTCTAAATTTTATTC 57.495 32.000 15.91 0.00 0.00 1.75
264 265 8.477984 AATGTGCGCATGTTCTAAATTTTATT 57.522 26.923 15.91 0.00 35.15 1.40
265 266 8.477984 AAATGTGCGCATGTTCTAAATTTTAT 57.522 26.923 15.91 0.00 35.15 1.40
266 267 7.881643 AAATGTGCGCATGTTCTAAATTTTA 57.118 28.000 15.91 0.00 35.15 1.52
267 268 6.783892 AAATGTGCGCATGTTCTAAATTTT 57.216 29.167 15.91 0.00 35.15 1.82
268 269 6.592166 CAAAATGTGCGCATGTTCTAAATTT 58.408 32.000 15.91 5.03 35.15 1.82
269 270 5.389725 GCAAAATGTGCGCATGTTCTAAATT 60.390 36.000 15.91 0.00 45.10 1.82
270 271 4.091800 GCAAAATGTGCGCATGTTCTAAAT 59.908 37.500 15.91 0.00 45.10 1.40
271 272 3.428198 GCAAAATGTGCGCATGTTCTAAA 59.572 39.130 15.91 0.00 45.10 1.85
272 273 2.985809 GCAAAATGTGCGCATGTTCTAA 59.014 40.909 15.91 0.00 45.10 2.10
273 274 2.594321 GCAAAATGTGCGCATGTTCTA 58.406 42.857 15.91 0.00 45.10 2.10
274 275 1.421382 GCAAAATGTGCGCATGTTCT 58.579 45.000 15.91 0.00 45.10 3.01
275 276 3.933118 GCAAAATGTGCGCATGTTC 57.067 47.368 15.91 0.00 45.10 3.18
284 285 9.160576 CAAATGTACAGAATTTTGCAAAATGTG 57.839 29.630 32.23 30.38 38.53 3.21
285 286 8.891720 ACAAATGTACAGAATTTTGCAAAATGT 58.108 25.926 32.23 28.19 38.53 2.71
286 287 9.719279 AACAAATGTACAGAATTTTGCAAAATG 57.281 25.926 32.23 24.77 38.53 2.32
398 399 7.206789 TCCCTTTTTCATTTTCTCCCTTTTT 57.793 32.000 0.00 0.00 0.00 1.94
399 400 6.823286 TCCCTTTTTCATTTTCTCCCTTTT 57.177 33.333 0.00 0.00 0.00 2.27
400 401 6.157820 TGTTCCCTTTTTCATTTTCTCCCTTT 59.842 34.615 0.00 0.00 0.00 3.11
401 402 5.665360 TGTTCCCTTTTTCATTTTCTCCCTT 59.335 36.000 0.00 0.00 0.00 3.95
402 403 5.215845 TGTTCCCTTTTTCATTTTCTCCCT 58.784 37.500 0.00 0.00 0.00 4.20
403 404 5.304357 TCTGTTCCCTTTTTCATTTTCTCCC 59.696 40.000 0.00 0.00 0.00 4.30
404 405 6.405278 TCTGTTCCCTTTTTCATTTTCTCC 57.595 37.500 0.00 0.00 0.00 3.71
405 406 8.716646 TTTTCTGTTCCCTTTTTCATTTTCTC 57.283 30.769 0.00 0.00 0.00 2.87
458 459 7.114866 TCTTGAACCGGTTTTCCTAATTTTT 57.885 32.000 23.22 0.00 37.95 1.94
459 460 6.718522 TCTTGAACCGGTTTTCCTAATTTT 57.281 33.333 23.22 0.00 37.95 1.82
460 461 6.097129 TGTTCTTGAACCGGTTTTCCTAATTT 59.903 34.615 23.22 0.00 37.95 1.82
461 462 5.595133 TGTTCTTGAACCGGTTTTCCTAATT 59.405 36.000 23.22 0.00 37.95 1.40
462 463 5.134661 TGTTCTTGAACCGGTTTTCCTAAT 58.865 37.500 23.22 0.00 37.95 1.73
463 464 4.525024 TGTTCTTGAACCGGTTTTCCTAA 58.475 39.130 23.22 9.86 37.95 2.69
464 465 4.153673 TGTTCTTGAACCGGTTTTCCTA 57.846 40.909 23.22 4.86 37.95 2.94
465 466 3.007473 TGTTCTTGAACCGGTTTTCCT 57.993 42.857 23.22 0.00 37.95 3.36
466 467 4.316205 AATGTTCTTGAACCGGTTTTCC 57.684 40.909 23.22 9.58 0.00 3.13
467 468 5.106442 ACAAATGTTCTTGAACCGGTTTTC 58.894 37.500 23.22 10.66 0.00 2.29
468 469 5.079689 ACAAATGTTCTTGAACCGGTTTT 57.920 34.783 23.22 6.01 0.00 2.43
469 470 4.729227 ACAAATGTTCTTGAACCGGTTT 57.271 36.364 23.22 4.98 0.00 3.27
470 471 5.127491 TCTACAAATGTTCTTGAACCGGTT 58.873 37.500 22.50 22.50 0.00 4.44
471 472 4.710324 TCTACAAATGTTCTTGAACCGGT 58.290 39.130 0.00 0.00 0.00 5.28
472 473 5.334879 CCTTCTACAAATGTTCTTGAACCGG 60.335 44.000 0.00 0.00 0.00 5.28
473 474 5.238650 ACCTTCTACAAATGTTCTTGAACCG 59.761 40.000 10.51 0.83 0.00 4.44
474 475 6.635030 ACCTTCTACAAATGTTCTTGAACC 57.365 37.500 10.51 0.00 0.00 3.62
475 476 7.139392 GGAACCTTCTACAAATGTTCTTGAAC 58.861 38.462 6.56 6.56 36.45 3.18
476 477 6.831353 TGGAACCTTCTACAAATGTTCTTGAA 59.169 34.615 0.00 0.00 36.45 2.69
477 478 6.361433 TGGAACCTTCTACAAATGTTCTTGA 58.639 36.000 0.00 0.00 36.45 3.02
478 479 6.633500 TGGAACCTTCTACAAATGTTCTTG 57.367 37.500 0.00 0.00 36.45 3.02
479 480 7.654022 TTTGGAACCTTCTACAAATGTTCTT 57.346 32.000 0.00 0.00 36.45 2.52
480 481 7.489160 GTTTTGGAACCTTCTACAAATGTTCT 58.511 34.615 0.00 0.00 36.45 3.01
481 482 7.694388 GTTTTGGAACCTTCTACAAATGTTC 57.306 36.000 0.00 0.00 33.40 3.18
496 497 4.649088 AGTTTACAGCTGGTTTTGGAAC 57.351 40.909 19.93 10.94 34.96 3.62
497 498 4.098807 GGAAGTTTACAGCTGGTTTTGGAA 59.901 41.667 19.93 0.00 0.00 3.53
498 499 3.634910 GGAAGTTTACAGCTGGTTTTGGA 59.365 43.478 19.93 0.00 0.00 3.53
499 500 3.383185 TGGAAGTTTACAGCTGGTTTTGG 59.617 43.478 19.93 0.00 0.00 3.28
500 501 4.338118 TCTGGAAGTTTACAGCTGGTTTTG 59.662 41.667 19.93 0.00 39.05 2.44
501 502 4.532834 TCTGGAAGTTTACAGCTGGTTTT 58.467 39.130 19.93 4.83 39.05 2.43
502 503 4.164843 TCTGGAAGTTTACAGCTGGTTT 57.835 40.909 19.93 4.45 39.05 3.27
503 504 3.857157 TCTGGAAGTTTACAGCTGGTT 57.143 42.857 19.93 0.00 39.05 3.67
504 505 3.496870 CCTTCTGGAAGTTTACAGCTGGT 60.497 47.826 19.93 6.35 39.05 4.00
505 506 3.077359 CCTTCTGGAAGTTTACAGCTGG 58.923 50.000 19.93 0.00 39.05 4.85
506 507 3.744660 ACCTTCTGGAAGTTTACAGCTG 58.255 45.455 13.48 13.48 39.05 4.24
507 508 4.439253 AACCTTCTGGAAGTTTACAGCT 57.561 40.909 9.15 0.00 39.05 4.24
508 509 4.023107 GGAAACCTTCTGGAAGTTTACAGC 60.023 45.833 9.15 0.00 39.05 4.40
509 510 5.130350 TGGAAACCTTCTGGAAGTTTACAG 58.870 41.667 13.76 0.00 40.61 2.74
510 511 5.104277 TCTGGAAACCTTCTGGAAGTTTACA 60.104 40.000 15.43 15.43 36.72 2.41
511 512 5.374071 TCTGGAAACCTTCTGGAAGTTTAC 58.626 41.667 9.15 10.05 36.72 2.01
512 513 5.640158 TCTGGAAACCTTCTGGAAGTTTA 57.360 39.130 9.15 0.00 36.72 2.01
513 514 4.519906 TCTGGAAACCTTCTGGAAGTTT 57.480 40.909 9.15 9.12 36.72 2.66
514 515 4.519906 TTCTGGAAACCTTCTGGAAGTT 57.480 40.909 9.15 0.00 36.72 2.66
515 516 4.519906 TTTCTGGAAACCTTCTGGAAGT 57.480 40.909 9.15 0.00 36.72 3.01
516 517 4.219288 CCATTTCTGGAAACCTTCTGGAAG 59.781 45.833 3.57 3.57 46.37 3.46
517 518 4.151883 CCATTTCTGGAAACCTTCTGGAA 58.848 43.478 6.75 0.00 46.37 3.53
518 519 3.500289 CCCATTTCTGGAAACCTTCTGGA 60.500 47.826 11.82 0.00 46.37 3.86
519 520 2.827921 CCCATTTCTGGAAACCTTCTGG 59.172 50.000 0.00 2.54 46.37 3.86
520 521 3.766545 TCCCATTTCTGGAAACCTTCTG 58.233 45.455 0.00 0.00 46.37 3.02
521 522 4.293368 AGATCCCATTTCTGGAAACCTTCT 59.707 41.667 0.00 0.00 46.37 2.85
522 523 4.400567 CAGATCCCATTTCTGGAAACCTTC 59.599 45.833 0.00 0.00 46.37 3.46
523 524 4.202716 ACAGATCCCATTTCTGGAAACCTT 60.203 41.667 5.75 0.00 46.37 3.50
524 525 3.334881 ACAGATCCCATTTCTGGAAACCT 59.665 43.478 5.75 0.00 46.37 3.50
525 526 3.445096 CACAGATCCCATTTCTGGAAACC 59.555 47.826 5.75 0.00 46.37 3.27
526 527 3.445096 CCACAGATCCCATTTCTGGAAAC 59.555 47.826 5.75 0.00 46.37 2.78
527 528 3.333381 TCCACAGATCCCATTTCTGGAAA 59.667 43.478 5.75 0.00 46.37 3.13
528 529 2.918934 TCCACAGATCCCATTTCTGGAA 59.081 45.455 5.75 0.00 46.37 3.53
529 530 2.561187 TCCACAGATCCCATTTCTGGA 58.439 47.619 5.75 0.00 46.37 3.86
530 531 3.019564 GTTCCACAGATCCCATTTCTGG 58.980 50.000 5.75 0.00 43.95 3.86
531 532 2.679837 CGTTCCACAGATCCCATTTCTG 59.320 50.000 0.00 0.00 44.95 3.02
532 533 2.941415 GCGTTCCACAGATCCCATTTCT 60.941 50.000 0.00 0.00 0.00 2.52
533 534 1.401905 GCGTTCCACAGATCCCATTTC 59.598 52.381 0.00 0.00 0.00 2.17
534 535 1.463674 GCGTTCCACAGATCCCATTT 58.536 50.000 0.00 0.00 0.00 2.32
535 536 0.744414 CGCGTTCCACAGATCCCATT 60.744 55.000 0.00 0.00 0.00 3.16
536 537 1.153369 CGCGTTCCACAGATCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
537 538 2.264480 CGCGTTCCACAGATCCCA 59.736 61.111 0.00 0.00 0.00 4.37
538 539 3.195698 GCGCGTTCCACAGATCCC 61.196 66.667 8.43 0.00 0.00 3.85
539 540 3.554692 CGCGCGTTCCACAGATCC 61.555 66.667 24.19 0.00 0.00 3.36
540 541 4.210304 GCGCGCGTTCCACAGATC 62.210 66.667 32.35 6.30 0.00 2.75
555 556 1.222115 GCCTATTTGGTAGCGAGGCG 61.222 60.000 10.11 0.00 43.05 5.52
556 557 2.618165 GCCTATTTGGTAGCGAGGC 58.382 57.895 10.11 10.11 45.48 4.70
557 558 0.600255 CGGCCTATTTGGTAGCGAGG 60.600 60.000 0.00 0.00 38.35 4.63
558 559 0.104304 ACGGCCTATTTGGTAGCGAG 59.896 55.000 0.00 0.00 38.35 5.03
559 560 0.103572 GACGGCCTATTTGGTAGCGA 59.896 55.000 0.00 0.00 38.35 4.93
560 561 0.878961 GGACGGCCTATTTGGTAGCG 60.879 60.000 0.00 0.00 38.35 4.26
561 562 0.878961 CGGACGGCCTATTTGGTAGC 60.879 60.000 5.33 0.00 38.35 3.58
562 563 0.462789 ACGGACGGCCTATTTGGTAG 59.537 55.000 5.33 0.00 38.35 3.18
563 564 0.176219 CACGGACGGCCTATTTGGTA 59.824 55.000 5.33 0.00 38.35 3.25
564 565 1.078708 CACGGACGGCCTATTTGGT 60.079 57.895 5.33 0.00 38.35 3.67
565 566 1.078708 ACACGGACGGCCTATTTGG 60.079 57.895 5.33 0.00 39.35 3.28
566 567 0.390603 TGACACGGACGGCCTATTTG 60.391 55.000 5.33 0.00 0.00 2.32
567 568 0.108329 CTGACACGGACGGCCTATTT 60.108 55.000 5.33 0.00 0.00 1.40
568 569 1.255667 ACTGACACGGACGGCCTATT 61.256 55.000 5.33 0.00 0.00 1.73
569 570 1.681327 ACTGACACGGACGGCCTAT 60.681 57.895 5.33 0.00 0.00 2.57
570 571 2.282674 ACTGACACGGACGGCCTA 60.283 61.111 5.33 0.00 0.00 3.93
571 572 3.991051 CACTGACACGGACGGCCT 61.991 66.667 5.33 0.00 0.00 5.19
573 574 3.296709 ATCCACTGACACGGACGGC 62.297 63.158 0.00 0.00 33.05 5.68
574 575 1.153823 GATCCACTGACACGGACGG 60.154 63.158 0.00 0.00 33.05 4.79
575 576 1.514228 CGATCCACTGACACGGACG 60.514 63.158 0.00 0.00 33.05 4.79
576 577 1.153823 CCGATCCACTGACACGGAC 60.154 63.158 0.00 0.00 42.55 4.79
577 578 1.183030 AACCGATCCACTGACACGGA 61.183 55.000 0.00 0.00 42.55 4.69
578 579 0.736325 GAACCGATCCACTGACACGG 60.736 60.000 0.00 0.00 44.22 4.94
579 580 1.071019 CGAACCGATCCACTGACACG 61.071 60.000 0.00 0.00 0.00 4.49
580 581 0.242825 TCGAACCGATCCACTGACAC 59.757 55.000 0.00 0.00 0.00 3.67
581 582 1.182667 ATCGAACCGATCCACTGACA 58.817 50.000 0.00 0.00 43.45 3.58
582 583 1.927174 CAATCGAACCGATCCACTGAC 59.073 52.381 2.17 0.00 46.30 3.51
583 584 1.739035 GCAATCGAACCGATCCACTGA 60.739 52.381 2.17 0.00 46.30 3.41
584 585 0.652592 GCAATCGAACCGATCCACTG 59.347 55.000 2.17 0.00 46.30 3.66
585 586 0.249120 TGCAATCGAACCGATCCACT 59.751 50.000 2.17 0.00 46.30 4.00
586 587 1.003545 CATGCAATCGAACCGATCCAC 60.004 52.381 2.17 0.00 46.30 4.02
587 588 1.298602 CATGCAATCGAACCGATCCA 58.701 50.000 2.17 4.18 46.30 3.41
588 589 1.003545 CACATGCAATCGAACCGATCC 60.004 52.381 2.17 0.00 46.30 3.36
589 590 1.665679 ACACATGCAATCGAACCGATC 59.334 47.619 2.17 0.00 46.30 3.69
591 592 0.795698 CACACATGCAATCGAACCGA 59.204 50.000 0.00 0.00 41.13 4.69
592 593 0.179192 CCACACATGCAATCGAACCG 60.179 55.000 0.00 0.00 0.00 4.44
593 594 0.456653 GCCACACATGCAATCGAACC 60.457 55.000 0.00 0.00 0.00 3.62
594 595 0.794229 CGCCACACATGCAATCGAAC 60.794 55.000 0.00 0.00 0.00 3.95
595 596 1.501292 CGCCACACATGCAATCGAA 59.499 52.632 0.00 0.00 0.00 3.71
596 597 3.037992 GCGCCACACATGCAATCGA 62.038 57.895 0.00 0.00 0.00 3.59
597 598 2.577644 GCGCCACACATGCAATCG 60.578 61.111 0.00 0.00 0.00 3.34
598 599 2.202650 GGCGCCACACATGCAATC 60.203 61.111 24.80 0.00 0.00 2.67
599 600 3.762247 GGGCGCCACACATGCAAT 61.762 61.111 30.85 0.00 0.00 3.56
606 607 4.778143 ATTCTCGGGGCGCCACAC 62.778 66.667 31.47 17.21 0.00 3.82
607 608 3.561120 AAATTCTCGGGGCGCCACA 62.561 57.895 31.47 15.25 0.00 4.17
608 609 2.750237 AAATTCTCGGGGCGCCAC 60.750 61.111 30.85 26.77 0.00 5.01
609 610 2.749839 CAAATTCTCGGGGCGCCA 60.750 61.111 30.85 6.55 0.00 5.69
610 611 2.437716 TCAAATTCTCGGGGCGCC 60.438 61.111 21.18 21.18 0.00 6.53
611 612 2.791927 GTCAAATTCTCGGGGCGC 59.208 61.111 0.00 0.00 0.00 6.53
612 613 0.458889 TACGTCAAATTCTCGGGGCG 60.459 55.000 0.00 0.00 0.00 6.13
613 614 1.729284 TTACGTCAAATTCTCGGGGC 58.271 50.000 0.00 0.00 0.00 5.80
614 615 4.957759 ATTTTACGTCAAATTCTCGGGG 57.042 40.909 1.85 0.00 0.00 5.73
615 616 5.933790 TGAATTTTACGTCAAATTCTCGGG 58.066 37.500 32.10 0.00 46.67 5.14
616 617 7.845617 TTTGAATTTTACGTCAAATTCTCGG 57.154 32.000 32.10 0.00 46.67 4.63
652 653 2.045242 GGCCGGAGAGGAAAACCC 60.045 66.667 5.05 0.00 45.00 4.11
653 654 2.045242 GGGCCGGAGAGGAAAACC 60.045 66.667 5.05 0.00 45.00 3.27
654 655 1.078356 GAGGGCCGGAGAGGAAAAC 60.078 63.158 5.05 0.00 45.00 2.43
655 656 1.229529 AGAGGGCCGGAGAGGAAAA 60.230 57.895 5.05 0.00 45.00 2.29
656 657 1.686110 GAGAGGGCCGGAGAGGAAA 60.686 63.158 5.05 0.00 45.00 3.13
657 658 2.042843 GAGAGGGCCGGAGAGGAA 60.043 66.667 5.05 0.00 45.00 3.36
658 659 4.507916 CGAGAGGGCCGGAGAGGA 62.508 72.222 5.05 0.00 45.00 3.71
659 660 4.824515 ACGAGAGGGCCGGAGAGG 62.825 72.222 5.05 0.00 44.97 3.69
660 661 2.756283 AACGAGAGGGCCGGAGAG 60.756 66.667 5.05 0.00 0.00 3.20
661 662 2.754658 GAACGAGAGGGCCGGAGA 60.755 66.667 5.05 0.00 0.00 3.71
662 663 2.167398 TTTGAACGAGAGGGCCGGAG 62.167 60.000 5.05 0.00 0.00 4.63
663 664 1.760479 TTTTGAACGAGAGGGCCGGA 61.760 55.000 5.05 0.00 0.00 5.14
664 665 1.298859 CTTTTGAACGAGAGGGCCGG 61.299 60.000 0.00 0.00 0.00 6.13
665 666 0.320421 TCTTTTGAACGAGAGGGCCG 60.320 55.000 0.00 0.00 0.00 6.13
666 667 1.892209 TTCTTTTGAACGAGAGGGCC 58.108 50.000 0.00 0.00 32.77 5.80
667 668 3.066203 TGTTTTCTTTTGAACGAGAGGGC 59.934 43.478 0.00 0.00 38.30 5.19
668 669 4.574828 TCTGTTTTCTTTTGAACGAGAGGG 59.425 41.667 0.00 0.00 38.30 4.30
669 670 5.734855 TCTGTTTTCTTTTGAACGAGAGG 57.265 39.130 0.00 0.00 38.30 3.69
670 671 7.537306 TGTTTTCTGTTTTCTTTTGAACGAGAG 59.463 33.333 0.00 0.00 38.30 3.20
671 672 7.364200 TGTTTTCTGTTTTCTTTTGAACGAGA 58.636 30.769 0.00 0.00 38.30 4.04
672 673 7.561237 TGTTTTCTGTTTTCTTTTGAACGAG 57.439 32.000 0.00 0.00 38.30 4.18
673 674 7.810282 TGATGTTTTCTGTTTTCTTTTGAACGA 59.190 29.630 0.00 0.00 38.30 3.85
674 675 7.948137 TGATGTTTTCTGTTTTCTTTTGAACG 58.052 30.769 0.00 0.00 38.30 3.95
675 676 9.906111 GATGATGTTTTCTGTTTTCTTTTGAAC 57.094 29.630 0.00 0.00 38.30 3.18
676 677 9.097257 GGATGATGTTTTCTGTTTTCTTTTGAA 57.903 29.630 0.00 0.00 36.52 2.69
677 678 8.477256 AGGATGATGTTTTCTGTTTTCTTTTGA 58.523 29.630 0.00 0.00 0.00 2.69
678 679 8.652810 AGGATGATGTTTTCTGTTTTCTTTTG 57.347 30.769 0.00 0.00 0.00 2.44
679 680 9.671279 AAAGGATGATGTTTTCTGTTTTCTTTT 57.329 25.926 0.00 0.00 0.00 2.27
680 681 9.671279 AAAAGGATGATGTTTTCTGTTTTCTTT 57.329 25.926 0.00 0.00 0.00 2.52
681 682 9.671279 AAAAAGGATGATGTTTTCTGTTTTCTT 57.329 25.926 0.00 0.00 0.00 2.52
708 709 7.831691 TGGATGATGTTTTCTGAGGTAAAAA 57.168 32.000 0.00 0.00 0.00 1.94
709 710 7.451255 ACATGGATGATGTTTTCTGAGGTAAAA 59.549 33.333 0.00 0.00 43.20 1.52
710 711 6.947733 ACATGGATGATGTTTTCTGAGGTAAA 59.052 34.615 0.00 0.00 43.20 2.01
711 712 6.375174 CACATGGATGATGTTTTCTGAGGTAA 59.625 38.462 0.00 0.00 43.20 2.85
712 713 5.882000 CACATGGATGATGTTTTCTGAGGTA 59.118 40.000 0.00 0.00 43.20 3.08
713 714 4.703575 CACATGGATGATGTTTTCTGAGGT 59.296 41.667 0.00 0.00 43.20 3.85
714 715 4.439700 GCACATGGATGATGTTTTCTGAGG 60.440 45.833 0.00 0.00 43.20 3.86
715 716 4.398358 AGCACATGGATGATGTTTTCTGAG 59.602 41.667 0.00 0.00 43.20 3.35
716 717 4.157105 CAGCACATGGATGATGTTTTCTGA 59.843 41.667 0.00 0.00 43.20 3.27
726 727 2.583024 TTTGGACAGCACATGGATGA 57.417 45.000 6.46 0.00 36.11 2.92
755 756 8.120465 CAGCAATCAATTTATTTCATTTCAGCC 58.880 33.333 0.00 0.00 0.00 4.85
757 758 9.373603 TCCAGCAATCAATTTATTTCATTTCAG 57.626 29.630 0.00 0.00 0.00 3.02
768 769 9.192642 CCCATGATATATCCAGCAATCAATTTA 57.807 33.333 10.25 0.00 32.47 1.40
772 773 4.951715 GCCCATGATATATCCAGCAATCAA 59.048 41.667 10.25 0.00 32.47 2.57
774 775 3.887716 GGCCCATGATATATCCAGCAATC 59.112 47.826 10.25 0.00 0.00 2.67
775 776 3.530564 AGGCCCATGATATATCCAGCAAT 59.469 43.478 10.25 0.00 0.00 3.56
776 777 2.921612 AGGCCCATGATATATCCAGCAA 59.078 45.455 10.25 0.00 0.00 3.91
871 1840 2.570284 GGTTTTGGGGGCGACAAGG 61.570 63.158 0.00 0.00 0.00 3.61
876 1845 3.083386 CTAGGGTTTTGGGGGCGA 58.917 61.111 0.00 0.00 0.00 5.54
946 1915 4.021925 GAGGCCTCAGCGGTGGTT 62.022 66.667 28.43 0.00 41.24 3.67
959 1928 3.803162 GCTTGGGGAGGAGGAGGC 61.803 72.222 0.00 0.00 0.00 4.70
986 1965 3.606687 CCGGCCATGTAGGTATTATTCC 58.393 50.000 2.24 0.00 40.61 3.01
1314 2293 2.180276 GAGAGGCCTTGTACCTTGAGA 58.820 52.381 6.77 0.00 37.77 3.27
1329 2308 1.484240 CTAGGAGCCACAAAGGAGAGG 59.516 57.143 0.00 0.00 41.22 3.69
1437 2422 2.159128 TCTCTGAGCAGTCTATTGCAGC 60.159 50.000 0.00 0.00 46.47 5.25
1476 2462 0.550638 TACAACCCCGAATTCCCCCT 60.551 55.000 0.00 0.00 0.00 4.79
1580 2811 5.646360 TCGACATGAACAGTCACTATGTAGA 59.354 40.000 0.00 0.00 36.31 2.59
1592 2823 1.273606 ACTCTGGGTCGACATGAACAG 59.726 52.381 18.91 15.64 35.31 3.16
1598 2829 3.296854 TGCTATTACTCTGGGTCGACAT 58.703 45.455 18.91 1.81 0.00 3.06
1603 2834 6.525629 ACATGTATTGCTATTACTCTGGGTC 58.474 40.000 0.00 0.00 0.00 4.46
1612 2843 8.435931 ACTCCCTCATACATGTATTGCTATTA 57.564 34.615 15.85 0.00 0.00 0.98
1644 2879 3.820467 TGGAAATTGTCAGTTGCTGTAGG 59.180 43.478 0.00 0.00 32.61 3.18
1650 2892 7.315142 TCAAGAATATGGAAATTGTCAGTTGC 58.685 34.615 0.00 0.00 0.00 4.17
1757 3006 5.586877 TCTCCTAACACACCAATAGTACCT 58.413 41.667 0.00 0.00 0.00 3.08
1862 3111 1.867233 CATCAGTGCTACCATAACGCC 59.133 52.381 0.00 0.00 0.00 5.68
1897 3146 5.290885 AGCTTGATTGTTTTTCGTTTTGTCC 59.709 36.000 0.00 0.00 0.00 4.02
1959 3209 8.877779 TCATTAACAAACATTTGGTTCAAACTG 58.122 29.630 9.09 0.00 42.34 3.16
2215 3469 1.835483 GCTGCACGTTCACTGACAGG 61.835 60.000 7.51 0.00 0.00 4.00
2573 3827 0.879765 TCGTCCTCTTTCTCGTCACC 59.120 55.000 0.00 0.00 0.00 4.02
2653 3913 4.116961 CAAAATCACCCTGCTGCAATATG 58.883 43.478 3.02 2.05 0.00 1.78
2695 3955 3.073650 AGAGGAAATCAACTTGGCTCAGT 59.926 43.478 0.00 0.00 0.00 3.41
2758 4018 1.689233 TGACTAAGCGGGCCCTCAT 60.689 57.895 22.43 7.67 0.00 2.90
2867 4141 7.357941 CGACAGTATCAAAAATATCTCAGAGCG 60.358 40.741 0.00 0.00 0.00 5.03
2875 4149 8.958043 GGCAAAATCGACAGTATCAAAAATATC 58.042 33.333 0.00 0.00 0.00 1.63
2886 4160 1.948611 GCCTGGGCAAAATCGACAGTA 60.949 52.381 6.75 0.00 41.49 2.74
2889 4163 0.539438 AAGCCTGGGCAAAATCGACA 60.539 50.000 14.39 0.00 44.88 4.35
2903 4177 7.787028 AGAATTATTCGACTTCTCTAAAGCCT 58.213 34.615 0.00 0.00 34.02 4.58
2904 4178 9.187455 CTAGAATTATTCGACTTCTCTAAAGCC 57.813 37.037 0.00 0.00 31.89 4.35
2928 4205 4.069304 CACCGTTTGAACATCTTTCCCTA 58.931 43.478 0.00 0.00 0.00 3.53
2930 4207 2.621526 ACACCGTTTGAACATCTTTCCC 59.378 45.455 0.00 0.00 0.00 3.97
2955 4232 3.769739 AATGCGAGGATATAGGCACAA 57.230 42.857 0.00 0.00 38.36 3.33
2957 4234 3.403038 ACAAATGCGAGGATATAGGCAC 58.597 45.455 0.00 0.00 38.36 5.01
2997 4276 3.758755 ATCAGCTTCACACTCAACAGA 57.241 42.857 0.00 0.00 0.00 3.41
3014 4296 4.929211 CCGAAACAGTCAACACATCTATCA 59.071 41.667 0.00 0.00 0.00 2.15
3018 4300 1.873591 GCCGAAACAGTCAACACATCT 59.126 47.619 0.00 0.00 0.00 2.90
3019 4301 1.873591 AGCCGAAACAGTCAACACATC 59.126 47.619 0.00 0.00 0.00 3.06
3024 4306 0.235926 GAGCAGCCGAAACAGTCAAC 59.764 55.000 0.00 0.00 0.00 3.18
3028 4310 1.388547 TTTTGAGCAGCCGAAACAGT 58.611 45.000 0.00 0.00 0.00 3.55
3029 4311 2.322161 CATTTTGAGCAGCCGAAACAG 58.678 47.619 0.00 0.00 0.00 3.16
3052 4334 5.959618 AGTACTGAAATGGCAACTAAACC 57.040 39.130 0.00 0.00 37.61 3.27
3055 4337 5.302360 ACGAAGTACTGAAATGGCAACTAA 58.698 37.500 0.00 0.00 41.94 2.24
3073 4548 4.602006 TCAGCTCGATTCTGAATACGAAG 58.398 43.478 18.42 14.85 37.61 3.79
3105 4580 2.755929 GCACCTAGCAAACGAGAGG 58.244 57.895 0.00 0.00 44.79 3.69
3115 4590 1.767759 AAATGACCATGGCACCTAGC 58.232 50.000 13.04 0.00 44.65 3.42
3126 4607 2.741517 CACGTGTCATGCTAAATGACCA 59.258 45.455 7.58 2.42 45.70 4.02
3134 4615 0.250510 TTTGCCCACGTGTCATGCTA 60.251 50.000 15.65 5.80 0.00 3.49
3135 4616 1.106351 TTTTGCCCACGTGTCATGCT 61.106 50.000 15.65 0.00 0.00 3.79
3137 4618 0.950836 TCTTTTGCCCACGTGTCATG 59.049 50.000 15.65 0.00 0.00 3.07
3138 4619 0.951558 GTCTTTTGCCCACGTGTCAT 59.048 50.000 15.65 0.00 0.00 3.06
3174 4657 1.204312 GCTTCGACTTCAACGGTGC 59.796 57.895 0.00 0.00 0.00 5.01
3205 4688 2.104170 CAAGACTGGGAGGAGAGGTAC 58.896 57.143 0.00 0.00 0.00 3.34
3212 4695 1.228894 AGACGCAAGACTGGGAGGA 60.229 57.895 0.00 0.00 41.78 3.71
3214 4697 0.108898 CAGAGACGCAAGACTGGGAG 60.109 60.000 0.00 0.00 43.83 4.30
3215 4698 1.967535 CAGAGACGCAAGACTGGGA 59.032 57.895 0.00 0.00 43.83 4.37
3218 4701 1.005748 TGGCAGAGACGCAAGACTG 60.006 57.895 0.00 0.00 43.83 3.51
3227 4710 1.071605 GTGATCAACGTGGCAGAGAC 58.928 55.000 0.00 0.00 0.00 3.36
3274 4757 3.937706 GCATGACTGATGTATATCCTGCC 59.062 47.826 0.00 0.00 34.14 4.85
3275 4758 4.829968 AGCATGACTGATGTATATCCTGC 58.170 43.478 0.00 0.00 34.14 4.85
3290 4773 2.555199 GGTCACACATAGGAGCATGAC 58.445 52.381 0.00 0.00 36.55 3.06
3291 4774 1.136891 CGGTCACACATAGGAGCATGA 59.863 52.381 0.00 0.00 0.00 3.07
3299 4782 1.983605 GACGAACACGGTCACACATAG 59.016 52.381 0.00 0.00 0.00 2.23
3446 4933 1.349026 CCAGGTTCTCCTTCTTGCTCA 59.651 52.381 0.00 0.00 43.07 4.26
3449 4936 1.349357 ACTCCAGGTTCTCCTTCTTGC 59.651 52.381 0.00 0.00 43.07 4.01
3481 4968 1.181786 GTGTGGACTCTGAGGAGGAG 58.818 60.000 9.85 0.00 43.46 3.69
3482 4969 0.251832 GGTGTGGACTCTGAGGAGGA 60.252 60.000 9.85 0.00 43.46 3.71
3483 4970 1.599606 CGGTGTGGACTCTGAGGAGG 61.600 65.000 9.85 0.00 43.46 4.30
3502 4989 2.766400 CCTCAGCCTCCTCGACGAC 61.766 68.421 0.00 0.00 0.00 4.34
3568 5055 2.338984 CCGGTACATAGCCTCCGC 59.661 66.667 0.00 0.00 41.38 5.54
3573 5060 4.625350 TACCCCCGGTACATAGCC 57.375 61.111 0.00 0.00 37.09 3.93
3613 5100 1.760086 CTCCGATCTGCTCCAGGGT 60.760 63.158 0.00 0.00 31.51 4.34
3658 5145 3.922171 ACCTCTGAAATCCATGGAGTC 57.078 47.619 21.33 19.16 0.00 3.36
3691 5178 2.960170 CACCTCTTTGCTGGCAGC 59.040 61.111 31.91 31.91 42.82 5.25
3717 5204 1.685421 GGCCTCCAGAGCTCTCAGT 60.685 63.158 14.96 0.00 0.00 3.41
3760 5247 3.258290 GCCTGCTAGAAGCGCGAC 61.258 66.667 12.10 0.04 46.26 5.19
3768 5255 4.198890 CGCTCGCAGCCTGCTAGA 62.199 66.667 21.17 8.17 42.25 2.43
3811 5298 3.130633 TGAAGTTGTCGATGTGAAGGTG 58.869 45.455 0.00 0.00 0.00 4.00
3910 5397 3.142838 AATGATGGGCAGCACGGC 61.143 61.111 0.00 0.00 40.20 5.68
4037 5524 2.107041 AAACCTGCCACGGTCGATCA 62.107 55.000 0.00 0.00 35.89 2.92
4064 5551 2.232452 ACGATCAAAGTCCTCACAGGAG 59.768 50.000 0.00 0.00 46.90 3.69
4065 5552 2.231478 GACGATCAAAGTCCTCACAGGA 59.769 50.000 0.00 0.00 43.43 3.86
4066 5553 2.611518 GACGATCAAAGTCCTCACAGG 58.388 52.381 0.00 0.00 36.46 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.