Multiple sequence alignment - TraesCS7D01G345000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G345000 chr7D 100.000 4493 0 0 1 4493 442430622 442426130 0.000000e+00 8298
1 TraesCS7D01G345000 chr7A 91.758 1917 129 18 1767 3663 493453252 493451345 0.000000e+00 2638
2 TraesCS7D01G345000 chr7A 87.388 1451 113 28 3 1422 493460158 493458747 0.000000e+00 1602
3 TraesCS7D01G345000 chr7A 74.966 1466 292 62 1818 3242 128776157 128774726 4.970000e-169 604
4 TraesCS7D01G345000 chr7A 91.166 283 19 3 1416 1692 493453582 493453300 3.280000e-101 379
5 TraesCS7D01G345000 chr7B 92.762 1644 74 19 1712 3316 459119541 459117904 0.000000e+00 2335
6 TraesCS7D01G345000 chr7B 92.518 1497 92 14 1 1493 459121427 459119947 0.000000e+00 2126
7 TraesCS7D01G345000 chr7B 90.708 678 56 6 3314 3986 459117748 459117073 0.000000e+00 896
8 TraesCS7D01G345000 chr7B 95.567 203 8 1 1491 1692 459119732 459119530 1.560000e-84 324
9 TraesCS7D01G345000 chr7B 97.268 183 5 0 4184 4366 459113895 459113713 1.210000e-80 311
10 TraesCS7D01G345000 chr7B 92.344 209 12 1 3986 4190 459117008 459116800 1.220000e-75 294
11 TraesCS7D01G345000 chr1B 86.785 787 93 8 3661 4437 600378578 600379363 0.000000e+00 867
12 TraesCS7D01G345000 chr4D 86.524 794 93 9 3662 4444 8985342 8984552 0.000000e+00 861
13 TraesCS7D01G345000 chr4D 83.276 293 44 4 3663 3953 353519050 353519339 9.580000e-67 265
14 TraesCS7D01G345000 chr4D 82.143 252 35 7 3822 4065 129490970 129491219 1.640000e-49 207
15 TraesCS7D01G345000 chr4D 82.143 252 35 5 3822 4065 459395700 459395949 1.640000e-49 207
16 TraesCS7D01G345000 chr4D 82.143 252 35 7 3822 4065 502961715 502961466 1.640000e-49 207
17 TraesCS7D01G345000 chr6D 80.441 1089 199 13 2138 3222 391563857 391564935 0.000000e+00 819
18 TraesCS7D01G345000 chr6D 87.352 253 32 0 1815 2067 391687688 391687940 1.580000e-74 291
19 TraesCS7D01G345000 chr6D 81.124 249 47 0 2138 2386 391688288 391688536 2.740000e-47 200
20 TraesCS7D01G345000 chr6D 88.889 135 15 0 3359 3493 391565042 391565176 2.780000e-37 167
21 TraesCS7D01G345000 chr6B 79.928 1116 202 18 2138 3245 585246749 585247850 0.000000e+00 800
22 TraesCS7D01G345000 chr6B 80.055 1093 196 17 2138 3222 585270806 585271884 0.000000e+00 791
23 TraesCS7D01G345000 chr6B 79.605 1113 211 14 2138 3245 585222796 585223897 0.000000e+00 784
24 TraesCS7D01G345000 chr6B 79.659 1116 205 17 2138 3245 585258781 585259882 0.000000e+00 784
25 TraesCS7D01G345000 chr6B 73.864 1056 232 31 2212 3243 585328127 585329162 9.120000e-102 381
26 TraesCS7D01G345000 chr6B 87.302 252 32 0 1815 2066 585256959 585257210 5.690000e-74 289
27 TraesCS7D01G345000 chr6B 86.508 252 34 0 1815 2066 585268990 585269241 1.230000e-70 278
28 TraesCS7D01G345000 chr6B 85.714 252 36 0 1818 2069 585246188 585246439 2.660000e-67 267
29 TraesCS7D01G345000 chr6A 80.018 1091 200 14 2138 3222 537866739 537867817 0.000000e+00 791
30 TraesCS7D01G345000 chr6A 74.692 1055 228 29 2212 3245 537874940 537875976 2.480000e-117 433
31 TraesCS7D01G345000 chr6A 86.275 255 35 0 1815 2069 537866171 537866425 1.230000e-70 278
32 TraesCS7D01G345000 chr6A 88.889 135 15 0 3359 3493 537867923 537868057 2.780000e-37 167
33 TraesCS7D01G345000 chr4A 84.787 539 68 8 3664 4191 116728979 116729514 3.080000e-146 529
34 TraesCS7D01G345000 chr4A 87.243 243 27 3 3715 3956 445871308 445871547 1.590000e-69 274
35 TraesCS7D01G345000 chr4A 82.736 307 46 6 3665 3967 111296693 111296390 2.660000e-67 267
36 TraesCS7D01G345000 chr4A 87.097 186 22 2 3986 4170 445871786 445871970 4.550000e-50 209
37 TraesCS7D01G345000 chrUn 77.778 450 90 7 2558 3005 475918193 475917752 7.410000e-68 268
38 TraesCS7D01G345000 chrUn 88.889 135 15 0 3359 3493 250187582 250187716 2.780000e-37 167
39 TraesCS7D01G345000 chrUn 88.889 135 15 0 3359 3493 457415253 457415119 2.780000e-37 167
40 TraesCS7D01G345000 chrUn 88.889 135 15 0 3359 3493 461023449 461023315 2.780000e-37 167
41 TraesCS7D01G345000 chrUn 88.889 135 15 0 3359 3493 461594870 461594736 2.780000e-37 167
42 TraesCS7D01G345000 chrUn 88.889 135 15 0 3359 3493 466942570 466942704 2.780000e-37 167
43 TraesCS7D01G345000 chr5D 82.213 253 33 5 3822 4065 324712460 324712709 1.640000e-49 207
44 TraesCS7D01G345000 chr5D 81.746 252 36 5 3822 4065 133274095 133273846 7.620000e-48 202
45 TraesCS7D01G345000 chr2D 82.143 252 35 5 3822 4065 486373535 486373286 1.640000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G345000 chr7D 442426130 442430622 4492 True 8298.000000 8298 100.000000 1 4493 1 chr7D.!!$R1 4492
1 TraesCS7D01G345000 chr7A 493458747 493460158 1411 True 1602.000000 1602 87.388000 3 1422 1 chr7A.!!$R2 1419
2 TraesCS7D01G345000 chr7A 493451345 493453582 2237 True 1508.500000 2638 91.462000 1416 3663 2 chr7A.!!$R3 2247
3 TraesCS7D01G345000 chr7A 128774726 128776157 1431 True 604.000000 604 74.966000 1818 3242 1 chr7A.!!$R1 1424
4 TraesCS7D01G345000 chr7B 459113713 459121427 7714 True 1047.666667 2335 93.527833 1 4366 6 chr7B.!!$R1 4365
5 TraesCS7D01G345000 chr1B 600378578 600379363 785 False 867.000000 867 86.785000 3661 4437 1 chr1B.!!$F1 776
6 TraesCS7D01G345000 chr4D 8984552 8985342 790 True 861.000000 861 86.524000 3662 4444 1 chr4D.!!$R1 782
7 TraesCS7D01G345000 chr6D 391563857 391565176 1319 False 493.000000 819 84.665000 2138 3493 2 chr6D.!!$F1 1355
8 TraesCS7D01G345000 chr6D 391687688 391688536 848 False 245.500000 291 84.238000 1815 2386 2 chr6D.!!$F2 571
9 TraesCS7D01G345000 chr6B 585222796 585223897 1101 False 784.000000 784 79.605000 2138 3245 1 chr6B.!!$F1 1107
10 TraesCS7D01G345000 chr6B 585256959 585259882 2923 False 536.500000 784 83.480500 1815 3245 2 chr6B.!!$F4 1430
11 TraesCS7D01G345000 chr6B 585268990 585271884 2894 False 534.500000 791 83.281500 1815 3222 2 chr6B.!!$F5 1407
12 TraesCS7D01G345000 chr6B 585246188 585247850 1662 False 533.500000 800 82.821000 1818 3245 2 chr6B.!!$F3 1427
13 TraesCS7D01G345000 chr6B 585328127 585329162 1035 False 381.000000 381 73.864000 2212 3243 1 chr6B.!!$F2 1031
14 TraesCS7D01G345000 chr6A 537874940 537875976 1036 False 433.000000 433 74.692000 2212 3245 1 chr6A.!!$F1 1033
15 TraesCS7D01G345000 chr6A 537866171 537868057 1886 False 412.000000 791 85.060667 1815 3493 3 chr6A.!!$F2 1678
16 TraesCS7D01G345000 chr4A 116728979 116729514 535 False 529.000000 529 84.787000 3664 4191 1 chr4A.!!$F1 527
17 TraesCS7D01G345000 chr4A 445871308 445871970 662 False 241.500000 274 87.170000 3715 4170 2 chr4A.!!$F2 455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 415 1.496060 ACCGCCATCATCTTGTCCTA 58.504 50.0 0.0 0.0 0.0 2.94 F
1765 2018 0.036388 TGCAACTCGATCTGGTTCCC 60.036 55.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2064 0.320160 GCGTCGAAAGGGGTAGTGTT 60.320 55.0 0.00 0.0 0.00 3.32 R
3531 5547 1.167851 TTCTTGCTCGCCAAATGGAG 58.832 50.0 2.98 0.0 37.39 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 74 3.006110 CCTAGACTTCCACGTAAACACCA 59.994 47.826 0.00 0.00 0.00 4.17
229 235 4.479993 GCCACCTGAGCCGAGCAT 62.480 66.667 0.00 0.00 0.00 3.79
307 313 3.374745 GACTACTCGTTGTTCGGTTTCA 58.625 45.455 0.00 0.00 40.32 2.69
345 351 7.232534 TGCTTTGATTACTTCCTTTACACCAAT 59.767 33.333 0.00 0.00 0.00 3.16
370 379 2.401766 GGGTTGACGATGCTGCCAG 61.402 63.158 0.00 0.00 0.00 4.85
406 415 1.496060 ACCGCCATCATCTTGTCCTA 58.504 50.000 0.00 0.00 0.00 2.94
414 423 5.080337 CCATCATCTTGTCCTAGCCTACTA 58.920 45.833 0.00 0.00 0.00 1.82
874 887 7.765360 TGCAATTAATTCCATCCAAAAGCTTAG 59.235 33.333 0.00 0.00 0.00 2.18
908 933 8.299570 AGAACAGTGCATAGATTTACCAAAAAG 58.700 33.333 0.00 0.00 0.00 2.27
975 1000 5.583457 TGGCGTTTAACTCCTTTCTATAAGC 59.417 40.000 5.68 0.00 0.00 3.09
1022 1047 0.102300 GTTCAAACCTGCCACACACC 59.898 55.000 0.00 0.00 0.00 4.16
1064 1094 0.370273 AAAGCTGCGCGTAGATTTCG 59.630 50.000 30.14 4.56 31.16 3.46
1070 1100 1.652124 TGCGCGTAGATTTCGAACTTC 59.348 47.619 8.43 0.00 0.00 3.01
1125 1155 1.810030 GACGATGGGAGTCGCCAAC 60.810 63.158 4.54 1.75 45.12 3.77
1170 1200 2.629656 GGTGGTTGCAGCGCTCATT 61.630 57.895 7.13 0.00 0.00 2.57
1222 1252 3.497031 GCCGCCGCTACAGTTTCC 61.497 66.667 0.00 0.00 0.00 3.13
1256 1286 0.251922 TACCTGCCTCCGTACCAAGT 60.252 55.000 0.00 0.00 0.00 3.16
1258 1288 0.391263 CCTGCCTCCGTACCAAGTTC 60.391 60.000 0.00 0.00 0.00 3.01
1260 1290 0.834687 TGCCTCCGTACCAAGTTCCT 60.835 55.000 0.00 0.00 0.00 3.36
1261 1291 0.391263 GCCTCCGTACCAAGTTCCTG 60.391 60.000 0.00 0.00 0.00 3.86
1263 1293 1.067071 CCTCCGTACCAAGTTCCTGTC 60.067 57.143 0.00 0.00 0.00 3.51
1264 1294 1.893801 CTCCGTACCAAGTTCCTGTCT 59.106 52.381 0.00 0.00 0.00 3.41
1266 1296 2.298163 TCCGTACCAAGTTCCTGTCTTC 59.702 50.000 0.00 0.00 0.00 2.87
1267 1297 2.325761 CGTACCAAGTTCCTGTCTTCG 58.674 52.381 0.00 0.00 0.00 3.79
1270 1300 4.142534 CGTACCAAGTTCCTGTCTTCGATA 60.143 45.833 0.00 0.00 0.00 2.92
1327 1357 1.423921 ACGGGGAACTGACCAATTTCT 59.576 47.619 0.00 0.00 41.09 2.52
1341 1371 4.021719 ACCAATTTCTTAGGAAGACGACGA 60.022 41.667 0.00 0.00 37.23 4.20
1342 1372 4.326548 CCAATTTCTTAGGAAGACGACGAC 59.673 45.833 0.00 0.00 37.23 4.34
1343 1373 2.888513 TTCTTAGGAAGACGACGACG 57.111 50.000 5.58 5.58 45.75 5.12
1344 1374 1.081892 TCTTAGGAAGACGACGACGG 58.918 55.000 12.58 0.00 44.46 4.79
1366 1396 1.733399 GAGTCGCCTTCACCGTCAC 60.733 63.158 0.00 0.00 0.00 3.67
1373 1403 1.663702 CTTCACCGTCACCGTCACC 60.664 63.158 0.00 0.00 0.00 4.02
1401 1431 2.679336 TCGTCGTAAGTCCATCGATTGA 59.321 45.455 0.00 0.00 36.08 2.57
1422 1452 5.639757 TGATTCGCCATCACTACAATTTTG 58.360 37.500 0.00 0.00 36.94 2.44
1432 1462 5.143660 TCACTACAATTTTGTTTCGCATCG 58.856 37.500 0.63 0.00 42.35 3.84
1433 1463 4.909305 CACTACAATTTTGTTTCGCATCGT 59.091 37.500 0.63 0.00 42.35 3.73
1438 1468 1.588674 TTTGTTTCGCATCGTCTGGT 58.411 45.000 0.00 0.00 0.00 4.00
1440 1470 0.249699 TGTTTCGCATCGTCTGGTGT 60.250 50.000 0.00 0.00 0.00 4.16
1450 1480 3.371102 TCGTCTGGTGTTTTCTCAGAG 57.629 47.619 0.00 0.00 38.09 3.35
1551 1804 7.337167 AGATAAAGGAGAGTAACTACACGAGA 58.663 38.462 0.00 0.00 0.00 4.04
1611 1864 2.923035 CCCGGCCCGACCATCTAT 60.923 66.667 3.71 0.00 39.03 1.98
1616 1869 1.069090 GCCCGACCATCTATGCGAA 59.931 57.895 0.00 0.00 0.00 4.70
1692 1945 4.788617 ACCCTCCACTGGTACAATTTCTAT 59.211 41.667 0.00 0.00 38.70 1.98
1693 1946 5.253096 ACCCTCCACTGGTACAATTTCTATT 59.747 40.000 0.00 0.00 38.70 1.73
1694 1947 6.187682 CCCTCCACTGGTACAATTTCTATTT 58.812 40.000 0.00 0.00 38.70 1.40
1695 1948 6.663523 CCCTCCACTGGTACAATTTCTATTTT 59.336 38.462 0.00 0.00 38.70 1.82
1696 1949 7.148069 CCCTCCACTGGTACAATTTCTATTTTC 60.148 40.741 0.00 0.00 38.70 2.29
1697 1950 7.611855 CCTCCACTGGTACAATTTCTATTTTCT 59.388 37.037 0.00 0.00 38.70 2.52
1698 1951 8.335532 TCCACTGGTACAATTTCTATTTTCTG 57.664 34.615 0.00 0.00 38.70 3.02
1699 1952 8.160765 TCCACTGGTACAATTTCTATTTTCTGA 58.839 33.333 0.00 0.00 38.70 3.27
1700 1953 8.454106 CCACTGGTACAATTTCTATTTTCTGAG 58.546 37.037 0.00 0.00 38.70 3.35
1701 1954 9.003658 CACTGGTACAATTTCTATTTTCTGAGT 57.996 33.333 0.00 0.00 38.70 3.41
1710 1963 9.965902 AATTTCTATTTTCTGAGTATCACTGGT 57.034 29.630 0.00 0.00 42.56 4.00
1711 1964 8.777865 TTTCTATTTTCTGAGTATCACTGGTG 57.222 34.615 0.00 0.00 42.56 4.17
1712 1965 7.482169 TCTATTTTCTGAGTATCACTGGTGT 57.518 36.000 0.53 0.00 42.56 4.16
1713 1966 8.589701 TCTATTTTCTGAGTATCACTGGTGTA 57.410 34.615 0.53 0.00 42.56 2.90
1714 1967 8.467598 TCTATTTTCTGAGTATCACTGGTGTAC 58.532 37.037 0.53 3.76 42.56 2.90
1715 1968 6.413783 TTTTCTGAGTATCACTGGTGTACA 57.586 37.500 0.00 0.00 42.56 2.90
1716 1969 6.413783 TTTCTGAGTATCACTGGTGTACAA 57.586 37.500 0.00 0.00 42.56 2.41
1717 1970 6.605471 TTCTGAGTATCACTGGTGTACAAT 57.395 37.500 0.00 0.00 42.56 2.71
1718 1971 6.605471 TCTGAGTATCACTGGTGTACAATT 57.395 37.500 0.00 0.00 42.56 2.32
1719 1972 7.004555 TCTGAGTATCACTGGTGTACAATTT 57.995 36.000 0.00 0.00 42.56 1.82
1720 1973 7.097192 TCTGAGTATCACTGGTGTACAATTTC 58.903 38.462 0.00 0.00 42.56 2.17
1723 1976 8.590204 TGAGTATCACTGGTGTACAATTTCTAA 58.410 33.333 0.00 0.00 42.56 2.10
1725 1978 9.383519 AGTATCACTGGTGTACAATTTCTAATG 57.616 33.333 0.00 0.00 0.00 1.90
1730 1983 7.119116 CACTGGTGTACAATTTCTAATGCTACA 59.881 37.037 0.00 0.00 0.00 2.74
1764 2017 1.363744 CTGCAACTCGATCTGGTTCC 58.636 55.000 0.00 0.00 0.00 3.62
1765 2018 0.036388 TGCAACTCGATCTGGTTCCC 60.036 55.000 0.00 0.00 0.00 3.97
1772 2026 3.328050 ACTCGATCTGGTTCCCTTTCTTT 59.672 43.478 0.00 0.00 0.00 2.52
1780 2034 2.614734 GGTTCCCTTTCTTTCGATCGGT 60.615 50.000 16.41 0.00 0.00 4.69
1792 2062 2.171003 TCGATCGGTGGCATAGATGAT 58.829 47.619 16.41 1.80 0.00 2.45
1794 2064 2.094545 CGATCGGTGGCATAGATGATGA 60.095 50.000 7.38 0.00 37.82 2.92
1795 2065 3.614870 CGATCGGTGGCATAGATGATGAA 60.615 47.826 7.38 0.00 37.82 2.57
1797 2067 2.433970 TCGGTGGCATAGATGATGAACA 59.566 45.455 0.00 0.00 37.82 3.18
1798 2068 2.545526 CGGTGGCATAGATGATGAACAC 59.454 50.000 0.00 0.00 41.01 3.32
1808 2078 5.104259 AGATGATGAACACTACCCCTTTC 57.896 43.478 0.00 0.00 0.00 2.62
1906 2176 1.154035 GCCCGGCAAGAAATTCACG 60.154 57.895 3.91 0.00 0.00 4.35
2072 2342 2.698797 CCCATCATCCTTGGTACGTACT 59.301 50.000 24.07 1.24 31.99 2.73
2089 2359 3.070576 TCCAGCTAGCTCTGCGCA 61.071 61.111 16.15 10.98 42.61 6.09
2105 3017 1.518056 CGCACCTGGTTCTGCAATGT 61.518 55.000 0.00 0.00 32.57 2.71
2108 3020 1.682854 CACCTGGTTCTGCAATGTGTT 59.317 47.619 0.00 0.00 0.00 3.32
2112 3024 3.304659 CCTGGTTCTGCAATGTGTTGTAC 60.305 47.826 0.00 0.00 37.65 2.90
2118 3933 6.370442 GGTTCTGCAATGTGTTGTACTATGTA 59.630 38.462 0.00 0.00 37.65 2.29
2121 3936 7.035612 TCTGCAATGTGTTGTACTATGTAGAG 58.964 38.462 0.00 0.00 34.82 2.43
2124 3939 7.706607 TGCAATGTGTTGTACTATGTAGAGATC 59.293 37.037 0.00 0.00 37.65 2.75
2214 4043 1.997928 GCAGCGATTTCCAGCCTTCC 61.998 60.000 0.00 0.00 0.00 3.46
2292 4121 0.538057 CCTTCAGGCTGCCAGTCAAA 60.538 55.000 22.65 2.44 0.00 2.69
3130 4986 2.151202 GGATTGGCAACTTCGACAAGA 58.849 47.619 0.00 0.00 33.34 3.02
3141 4997 2.047179 GACAAGAGCACGGACCCC 60.047 66.667 0.00 0.00 0.00 4.95
3266 5122 7.922811 GTGTTCAAACCTTTCTTCTTGATTCAT 59.077 33.333 0.00 0.00 0.00 2.57
3316 5172 9.264719 TGTATACAGAGCATGATTCAAATGTAG 57.735 33.333 0.08 0.00 0.00 2.74
3317 5173 5.496133 ACAGAGCATGATTCAAATGTAGC 57.504 39.130 0.00 0.00 0.00 3.58
3510 5525 2.867624 TGACAGAGCAAGAAGGCAAAT 58.132 42.857 0.00 0.00 35.83 2.32
3518 5534 6.530534 CAGAGCAAGAAGGCAAATTTTCATAG 59.469 38.462 0.00 0.00 35.83 2.23
3557 5573 2.774439 TGGCGAGCAAGAAAGAAAAC 57.226 45.000 0.00 0.00 0.00 2.43
3561 5579 3.498777 GGCGAGCAAGAAAGAAAACTAGT 59.501 43.478 0.00 0.00 0.00 2.57
3572 5590 9.614792 AAGAAAGAAAACTAGTTAGAGCTGAAA 57.385 29.630 8.92 0.00 0.00 2.69
3575 5593 6.468543 AGAAAACTAGTTAGAGCTGAAAGGG 58.531 40.000 8.92 0.00 0.00 3.95
3578 5596 5.827326 ACTAGTTAGAGCTGAAAGGGTTT 57.173 39.130 0.00 0.00 0.00 3.27
3602 5621 8.912787 TTTGTAGCTAGAGAAATTAAGAGACG 57.087 34.615 0.00 0.00 0.00 4.18
3655 5674 3.865224 TTCATCATCACAATCGATGCG 57.135 42.857 0.00 0.00 42.15 4.73
3659 5678 1.009078 CATCACAATCGATGCGGTGT 58.991 50.000 18.75 9.19 36.64 4.16
3693 5712 7.891782 TGCGAGAATAAAACTTGTATTACTCG 58.108 34.615 18.09 18.09 39.04 4.18
3736 5756 1.720805 CACATAACTGTGCACGCCTA 58.279 50.000 13.13 3.18 45.79 3.93
3791 5811 7.148205 ACGACTGTGTAATTTACCAAAACTTGT 60.148 33.333 4.17 0.77 0.00 3.16
3855 5876 9.344772 TGAGTAATATGAGTCTTCCTCTCTAAC 57.655 37.037 0.00 0.00 41.11 2.34
3864 5885 6.191315 AGTCTTCCTCTCTAACAGCTTATGA 58.809 40.000 0.00 0.00 0.00 2.15
3931 5952 7.522073 GCTTCTCACTTTTCACCATACAAATGA 60.522 37.037 0.00 0.00 34.84 2.57
3962 6040 7.881775 AACAATCAGTTTCAACCTTAAGACT 57.118 32.000 3.36 0.00 37.03 3.24
3963 6041 8.974060 AACAATCAGTTTCAACCTTAAGACTA 57.026 30.769 3.36 0.00 37.03 2.59
3967 6045 9.495572 AATCAGTTTCAACCTTAAGACTAAGAG 57.504 33.333 3.36 0.00 37.32 2.85
3968 6046 7.442656 TCAGTTTCAACCTTAAGACTAAGAGG 58.557 38.462 3.36 0.00 37.32 3.69
3969 6047 7.070821 TCAGTTTCAACCTTAAGACTAAGAGGT 59.929 37.037 3.36 0.00 44.11 3.85
3970 6048 8.365647 CAGTTTCAACCTTAAGACTAAGAGGTA 58.634 37.037 3.36 0.00 41.49 3.08
3983 6061 3.453343 AGGTACTCCCTCCCTCCC 58.547 66.667 0.00 0.00 40.71 4.30
3984 6062 1.549322 AGGTACTCCCTCCCTCCCA 60.549 63.158 0.00 0.00 40.71 4.37
3994 6281 0.472734 CTCCCTCCCATCCTTCCGAT 60.473 60.000 0.00 0.00 0.00 4.18
4053 6340 1.079127 GTAGGTGACGGCATGCAGT 60.079 57.895 23.79 23.79 0.00 4.40
4149 6436 4.569162 TCCGTCAGTGTTCAGTTTAACAAG 59.431 41.667 0.00 0.00 40.85 3.16
4155 6442 6.315393 TCAGTGTTCAGTTTAACAAGACCTTC 59.685 38.462 0.00 0.00 40.85 3.46
4174 6465 1.373435 CACCAGCGGTTCCCACTTA 59.627 57.895 0.00 0.00 31.02 2.24
4255 9458 4.240096 CAAACTTGCCATTGATCAACTCC 58.760 43.478 11.07 2.29 0.00 3.85
4298 9501 6.536582 CAGATTCATGACGGAAGAAACATAGT 59.463 38.462 0.00 0.00 0.00 2.12
4329 9532 4.166246 ACCTCATAGATACGTCCAGTGA 57.834 45.455 0.00 0.00 0.00 3.41
4368 9571 9.436957 AGAGTGTACCACTTTATTTCTTACATG 57.563 33.333 0.00 0.00 45.44 3.21
4386 9589 0.676184 TGCCAAATGCGCCAAAGTAA 59.324 45.000 4.18 0.00 45.60 2.24
4396 9599 4.320023 TGCGCCAAAGTAACATAAAGAGA 58.680 39.130 4.18 0.00 0.00 3.10
4399 9602 5.163754 GCGCCAAAGTAACATAAAGAGATGT 60.164 40.000 0.00 0.00 41.92 3.06
4400 9603 6.250819 CGCCAAAGTAACATAAAGAGATGTG 58.749 40.000 0.00 0.00 39.99 3.21
4401 9604 6.555315 GCCAAAGTAACATAAAGAGATGTGG 58.445 40.000 0.00 0.00 39.99 4.17
4402 9605 6.374333 GCCAAAGTAACATAAAGAGATGTGGA 59.626 38.462 0.00 0.00 39.99 4.02
4419 9622 5.273674 TGTGGATTTTGCACTTCATTGAA 57.726 34.783 0.00 0.00 39.59 2.69
4423 9626 4.618489 GGATTTTGCACTTCATTGAACTCG 59.382 41.667 0.00 0.00 0.00 4.18
4437 9640 3.071479 TGAACTCGCTTACCAAATGGAC 58.929 45.455 6.42 0.00 38.94 4.02
4438 9641 2.851263 ACTCGCTTACCAAATGGACA 57.149 45.000 6.42 0.00 38.94 4.02
4439 9642 3.350219 ACTCGCTTACCAAATGGACAT 57.650 42.857 6.42 0.00 38.94 3.06
4440 9643 3.009723 ACTCGCTTACCAAATGGACATG 58.990 45.455 6.42 0.00 38.94 3.21
4441 9644 3.270027 CTCGCTTACCAAATGGACATGA 58.730 45.455 6.42 0.00 38.94 3.07
4443 9646 2.097466 CGCTTACCAAATGGACATGACC 59.903 50.000 7.32 7.32 38.94 4.02
4444 9647 2.097466 GCTTACCAAATGGACATGACCG 59.903 50.000 6.42 0.00 38.94 4.79
4445 9648 3.343617 CTTACCAAATGGACATGACCGT 58.656 45.455 6.42 6.41 38.94 4.83
4446 9649 2.286365 ACCAAATGGACATGACCGTT 57.714 45.000 14.85 14.85 40.39 4.44
4447 9650 1.885887 ACCAAATGGACATGACCGTTG 59.114 47.619 20.13 18.74 38.88 4.10
4448 9651 1.202114 CCAAATGGACATGACCGTTGG 59.798 52.381 24.51 24.51 38.88 3.77
4449 9652 2.158559 CAAATGGACATGACCGTTGGA 58.841 47.619 20.13 0.00 38.88 3.53
4450 9653 2.113860 AATGGACATGACCGTTGGAG 57.886 50.000 18.99 0.00 37.70 3.86
4451 9654 1.275666 ATGGACATGACCGTTGGAGA 58.724 50.000 9.68 0.00 0.00 3.71
4452 9655 0.608130 TGGACATGACCGTTGGAGAG 59.392 55.000 9.68 0.00 0.00 3.20
4453 9656 0.108138 GGACATGACCGTTGGAGAGG 60.108 60.000 0.00 0.00 0.00 3.69
4454 9657 0.895530 GACATGACCGTTGGAGAGGA 59.104 55.000 0.00 0.00 0.00 3.71
4455 9658 0.898320 ACATGACCGTTGGAGAGGAG 59.102 55.000 0.00 0.00 0.00 3.69
4456 9659 0.460987 CATGACCGTTGGAGAGGAGC 60.461 60.000 0.00 0.00 0.00 4.70
4457 9660 1.949847 ATGACCGTTGGAGAGGAGCG 61.950 60.000 0.00 0.00 0.00 5.03
4458 9661 3.991536 GACCGTTGGAGAGGAGCGC 62.992 68.421 0.00 0.00 0.00 5.92
4459 9662 3.764466 CCGTTGGAGAGGAGCGCT 61.764 66.667 11.27 11.27 0.00 5.92
4460 9663 2.202676 CGTTGGAGAGGAGCGCTC 60.203 66.667 29.38 29.38 0.00 5.03
4461 9664 2.202676 GTTGGAGAGGAGCGCTCG 60.203 66.667 29.81 0.00 31.18 5.03
4462 9665 3.452786 TTGGAGAGGAGCGCTCGG 61.453 66.667 29.81 0.00 31.18 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.109179 TTTTGCATGGCTAGCGCTTG 60.109 50.000 18.68 16.45 36.09 4.01
40 41 1.700955 GAAGTCTAGGCCCCGATACA 58.299 55.000 0.00 0.00 0.00 2.29
72 74 1.905512 GAGAGGTTACGCCCATGGT 59.094 57.895 11.73 0.00 38.26 3.55
229 235 0.247460 CTCGGTGCAGGATCACAAGA 59.753 55.000 0.00 0.00 38.66 3.02
307 313 6.479884 AGTAATCAAAGCAGAGGACAAAGAT 58.520 36.000 0.00 0.00 0.00 2.40
345 351 1.280710 AGCATCGTCAACCCCATAACA 59.719 47.619 0.00 0.00 0.00 2.41
370 379 0.034960 GGTTTCCTCAGGAGCCTTCC 60.035 60.000 8.71 0.00 44.39 3.46
406 415 7.125811 TGAACAAATCATACCTTCTAGTAGGCT 59.874 37.037 14.93 5.69 34.05 4.58
706 715 9.608617 TCATTCGACAATAATACTTCGTATCTC 57.391 33.333 0.00 0.00 33.20 2.75
713 722 7.041098 AGCCCATTCATTCGACAATAATACTTC 60.041 37.037 0.00 0.00 0.00 3.01
731 740 7.976175 CCTTTTCTTCTTTGTATAAGCCCATTC 59.024 37.037 0.00 0.00 0.00 2.67
813 826 3.303135 TCCAGCTGGAAGACGCGT 61.303 61.111 33.41 13.85 42.18 6.01
915 940 6.920758 CGAAGAGGAGTGATTCGAATTATTCT 59.079 38.462 19.94 10.75 46.57 2.40
919 944 4.360563 GCGAAGAGGAGTGATTCGAATTA 58.639 43.478 12.81 5.13 46.57 1.40
924 949 0.179161 ACGCGAAGAGGAGTGATTCG 60.179 55.000 15.93 2.41 46.42 3.34
1015 1040 3.190738 ATCCGTGTGGGGGTGTGTG 62.191 63.158 0.00 0.00 36.01 3.82
1016 1041 2.852075 ATCCGTGTGGGGGTGTGT 60.852 61.111 0.00 0.00 36.01 3.72
1064 1094 1.195674 GCAGAACGGCTTGAGAAGTTC 59.804 52.381 0.00 0.00 42.17 3.01
1134 1164 1.234615 CCACGCCGACTGACCAAATT 61.235 55.000 0.00 0.00 0.00 1.82
1165 1195 0.725686 CCTTGAGCTGCGACAATGAG 59.274 55.000 13.46 5.02 0.00 2.90
1170 1200 1.153765 CGATCCTTGAGCTGCGACA 60.154 57.895 0.00 0.00 0.00 4.35
1219 1249 5.566230 GCAGGTAGAAAGAACTTACGAGGAA 60.566 44.000 0.00 0.00 0.00 3.36
1222 1252 4.082136 AGGCAGGTAGAAAGAACTTACGAG 60.082 45.833 0.00 0.00 0.00 4.18
1263 1293 4.698583 CCCGTTATAGGGTCTATCGAAG 57.301 50.000 0.00 0.00 46.38 3.79
1274 1304 5.576447 AAAATTCTTGTGCCCGTTATAGG 57.424 39.130 0.00 0.00 0.00 2.57
1275 1305 7.186804 CAGTAAAATTCTTGTGCCCGTTATAG 58.813 38.462 0.00 0.00 0.00 1.31
1276 1306 6.094325 CCAGTAAAATTCTTGTGCCCGTTATA 59.906 38.462 0.00 0.00 0.00 0.98
1278 1308 4.216687 CCAGTAAAATTCTTGTGCCCGTTA 59.783 41.667 0.00 0.00 0.00 3.18
1279 1309 3.005367 CCAGTAAAATTCTTGTGCCCGTT 59.995 43.478 0.00 0.00 0.00 4.44
1280 1310 2.556622 CCAGTAAAATTCTTGTGCCCGT 59.443 45.455 0.00 0.00 0.00 5.28
1281 1311 2.094752 CCCAGTAAAATTCTTGTGCCCG 60.095 50.000 0.00 0.00 0.00 6.13
1290 1320 1.743394 CCGTCAGGCCCAGTAAAATTC 59.257 52.381 0.00 0.00 0.00 2.17
1327 1357 1.503542 GCCGTCGTCGTCTTCCTAA 59.496 57.895 0.71 0.00 35.01 2.69
1345 1375 4.796231 CGGTGAAGGCGACTCGGG 62.796 72.222 0.00 0.00 42.68 5.14
1346 1376 3.966026 GACGGTGAAGGCGACTCGG 62.966 68.421 0.00 0.00 42.68 4.63
1347 1377 2.504244 GACGGTGAAGGCGACTCG 60.504 66.667 0.00 0.00 42.68 4.18
1401 1431 5.643379 ACAAAATTGTAGTGATGGCGAAT 57.357 34.783 0.00 0.00 40.16 3.34
1408 1438 5.794945 CGATGCGAAACAAAATTGTAGTGAT 59.205 36.000 0.00 0.00 41.31 3.06
1412 1442 5.281376 CAGACGATGCGAAACAAAATTGTAG 59.719 40.000 0.00 0.00 41.31 2.74
1422 1452 0.865769 AACACCAGACGATGCGAAAC 59.134 50.000 0.00 0.00 0.00 2.78
1432 1462 6.625873 AAAATCTCTGAGAAAACACCAGAC 57.374 37.500 12.00 0.00 33.80 3.51
1551 1804 0.468226 TGGTCTTTTCACGGCAGAGT 59.532 50.000 0.00 0.00 0.00 3.24
1611 1864 3.909258 GACGTCGCCCTTCTTCGCA 62.909 63.158 0.00 0.00 0.00 5.10
1692 1945 6.413783 TGTACACCAGTGATACTCAGAAAA 57.586 37.500 4.48 0.00 0.00 2.29
1693 1946 6.413783 TTGTACACCAGTGATACTCAGAAA 57.586 37.500 4.48 0.00 0.00 2.52
1694 1947 6.605471 ATTGTACACCAGTGATACTCAGAA 57.395 37.500 4.48 0.00 0.00 3.02
1695 1948 6.605471 AATTGTACACCAGTGATACTCAGA 57.395 37.500 4.48 0.00 0.00 3.27
1696 1949 7.099764 AGAAATTGTACACCAGTGATACTCAG 58.900 38.462 4.48 0.00 0.00 3.35
1697 1950 7.004555 AGAAATTGTACACCAGTGATACTCA 57.995 36.000 4.48 0.00 0.00 3.41
1698 1951 8.997621 TTAGAAATTGTACACCAGTGATACTC 57.002 34.615 4.48 0.00 0.00 2.59
1699 1952 9.383519 CATTAGAAATTGTACACCAGTGATACT 57.616 33.333 4.48 0.00 0.00 2.12
1700 1953 8.122952 GCATTAGAAATTGTACACCAGTGATAC 58.877 37.037 4.48 4.53 0.00 2.24
1701 1954 8.046708 AGCATTAGAAATTGTACACCAGTGATA 58.953 33.333 4.48 0.00 0.00 2.15
1702 1955 6.886459 AGCATTAGAAATTGTACACCAGTGAT 59.114 34.615 4.48 0.00 0.00 3.06
1703 1956 6.237901 AGCATTAGAAATTGTACACCAGTGA 58.762 36.000 4.48 0.00 0.00 3.41
1704 1957 6.500684 AGCATTAGAAATTGTACACCAGTG 57.499 37.500 0.00 0.00 0.00 3.66
1705 1958 7.165485 TGTAGCATTAGAAATTGTACACCAGT 58.835 34.615 0.00 0.00 0.00 4.00
1706 1959 7.609760 TGTAGCATTAGAAATTGTACACCAG 57.390 36.000 0.00 0.00 0.00 4.00
1707 1960 7.880713 TCTTGTAGCATTAGAAATTGTACACCA 59.119 33.333 0.00 0.00 0.00 4.17
1708 1961 8.263940 TCTTGTAGCATTAGAAATTGTACACC 57.736 34.615 0.00 0.00 0.00 4.16
1716 1969 9.692325 AGGAGAATTTCTTGTAGCATTAGAAAT 57.308 29.630 0.00 0.00 45.60 2.17
1717 1970 9.167311 GAGGAGAATTTCTTGTAGCATTAGAAA 57.833 33.333 0.00 0.00 40.84 2.52
1718 1971 7.492669 CGAGGAGAATTTCTTGTAGCATTAGAA 59.507 37.037 0.00 0.00 0.00 2.10
1719 1972 6.980978 CGAGGAGAATTTCTTGTAGCATTAGA 59.019 38.462 0.00 0.00 0.00 2.10
1720 1973 6.292596 GCGAGGAGAATTTCTTGTAGCATTAG 60.293 42.308 0.00 0.00 0.00 1.73
1723 1976 3.873952 GCGAGGAGAATTTCTTGTAGCAT 59.126 43.478 0.00 0.00 0.00 3.79
1725 1978 3.308323 CAGCGAGGAGAATTTCTTGTAGC 59.692 47.826 0.00 5.30 0.00 3.58
1730 1983 2.479566 TGCAGCGAGGAGAATTTCTT 57.520 45.000 0.00 0.00 0.00 2.52
1737 1990 1.315981 ATCGAGTTGCAGCGAGGAGA 61.316 55.000 12.64 2.74 40.14 3.71
1738 1991 0.869454 GATCGAGTTGCAGCGAGGAG 60.869 60.000 12.64 0.00 40.14 3.69
1772 2026 1.616159 TCATCTATGCCACCGATCGA 58.384 50.000 18.66 0.00 0.00 3.59
1780 2034 4.202357 GGGTAGTGTTCATCATCTATGCCA 60.202 45.833 0.00 0.00 35.38 4.92
1792 2062 1.000060 CGTCGAAAGGGGTAGTGTTCA 60.000 52.381 0.00 0.00 0.00 3.18
1794 2064 0.320160 GCGTCGAAAGGGGTAGTGTT 60.320 55.000 0.00 0.00 0.00 3.32
1795 2065 1.183676 AGCGTCGAAAGGGGTAGTGT 61.184 55.000 0.00 0.00 0.00 3.55
1797 2067 1.183676 ACAGCGTCGAAAGGGGTAGT 61.184 55.000 0.00 0.00 0.00 2.73
1798 2068 0.813184 TACAGCGTCGAAAGGGGTAG 59.187 55.000 0.00 0.00 0.00 3.18
2089 2359 1.682854 CAACACATTGCAGAACCAGGT 59.317 47.619 0.00 0.00 0.00 4.00
2121 3936 3.553922 CCCCTGCGACAGAGATAAAGATC 60.554 52.174 8.20 0.00 32.44 2.75
2124 3939 1.757118 TCCCCTGCGACAGAGATAAAG 59.243 52.381 8.20 0.00 32.44 1.85
2133 3962 2.350895 CACCATTCCCCTGCGACA 59.649 61.111 0.00 0.00 0.00 4.35
2134 3963 2.438434 CCACCATTCCCCTGCGAC 60.438 66.667 0.00 0.00 0.00 5.19
2136 3965 2.046285 GTTCCACCATTCCCCTGCG 61.046 63.158 0.00 0.00 0.00 5.18
2202 4031 2.358247 GCGTCGGAAGGCTGGAAA 60.358 61.111 0.00 0.00 33.49 3.13
2214 4043 1.206578 GTTGATGGTGTTGGCGTCG 59.793 57.895 0.00 0.00 0.00 5.12
2292 4121 0.673644 GCATGTAGGTCTTGCCGTGT 60.674 55.000 0.00 0.00 43.70 4.49
3266 5122 9.959721 ACAAAAGCCTTTATAGATAGTCTCAAA 57.040 29.630 0.00 0.00 0.00 2.69
3316 5172 7.980099 ACAACAAGGTAGTGTAAGATATAGTGC 59.020 37.037 0.00 0.00 0.00 4.40
3317 5173 9.302345 CACAACAAGGTAGTGTAAGATATAGTG 57.698 37.037 0.00 0.00 0.00 2.74
3531 5547 1.167851 TTCTTGCTCGCCAAATGGAG 58.832 50.000 2.98 0.00 37.39 3.86
3533 5549 1.541147 TCTTTCTTGCTCGCCAAATGG 59.459 47.619 0.00 0.00 38.53 3.16
3537 5553 2.687935 AGTTTTCTTTCTTGCTCGCCAA 59.312 40.909 0.00 0.00 0.00 4.52
3557 5573 5.998363 ACAAAACCCTTTCAGCTCTAACTAG 59.002 40.000 0.00 0.00 0.00 2.57
3561 5579 4.760204 GCTACAAAACCCTTTCAGCTCTAA 59.240 41.667 0.00 0.00 31.32 2.10
3572 5590 8.603304 TCTTAATTTCTCTAGCTACAAAACCCT 58.397 33.333 0.00 0.00 0.00 4.34
3578 5596 8.053026 ACGTCTCTTAATTTCTCTAGCTACAA 57.947 34.615 0.00 0.00 0.00 2.41
3602 5621 3.297830 AGGCGCCAAAAGAATTACAAC 57.702 42.857 31.54 0.00 0.00 3.32
3637 5656 1.869132 ACCGCATCGATTGTGATGATG 59.131 47.619 7.86 0.00 46.98 3.07
3684 5703 7.234187 TGCATCAATCTTTGACGAGTAATAC 57.766 36.000 0.00 0.00 43.48 1.89
3693 5712 5.506982 GCCTCCTATTGCATCAATCTTTGAC 60.507 44.000 0.00 0.00 43.48 3.18
3731 5750 4.162690 GTGCAGGACCCCTAGGCG 62.163 72.222 2.05 0.00 36.11 5.52
3732 5751 3.798511 GGTGCAGGACCCCTAGGC 61.799 72.222 2.05 0.00 39.10 3.93
3855 5876 7.999679 TGGTCCAAAAGATTAATCATAAGCTG 58.000 34.615 17.56 5.81 37.79 4.24
3864 5885 9.898152 TTTGTTTTCTTGGTCCAAAAGATTAAT 57.102 25.926 5.64 0.00 33.79 1.40
3967 6045 0.472161 GATGGGAGGGAGGGAGTACC 60.472 65.000 0.00 0.00 40.67 3.34
3968 6046 0.472161 GGATGGGAGGGAGGGAGTAC 60.472 65.000 0.00 0.00 0.00 2.73
3969 6047 0.633835 AGGATGGGAGGGAGGGAGTA 60.634 60.000 0.00 0.00 0.00 2.59
3970 6048 1.541168 AAGGATGGGAGGGAGGGAGT 61.541 60.000 0.00 0.00 0.00 3.85
3974 6052 2.143419 CGGAAGGATGGGAGGGAGG 61.143 68.421 0.00 0.00 0.00 4.30
3975 6053 0.472734 ATCGGAAGGATGGGAGGGAG 60.473 60.000 0.00 0.00 32.92 4.30
3977 6055 4.320844 ATCGGAAGGATGGGAGGG 57.679 61.111 0.00 0.00 32.92 4.30
3984 6062 0.327924 TTGTGCACCATCGGAAGGAT 59.672 50.000 15.69 0.00 35.09 3.24
3994 6281 3.088532 AGAAACTGAACTTTGTGCACCA 58.911 40.909 15.69 0.00 0.00 4.17
4053 6340 9.929180 GAGATACTATAGGCAATATTGTGTTCA 57.071 33.333 16.61 0.10 32.91 3.18
4093 6380 1.967779 TCTGATGGTTCTTCGTCCACA 59.032 47.619 0.00 0.00 36.50 4.17
4149 6436 1.671379 GAACCGCTGGTGGAAGGTC 60.671 63.158 7.22 0.00 35.34 3.85
4174 6465 7.039504 TCGAACACCATAGAACCTACTAAACTT 60.040 37.037 0.00 0.00 0.00 2.66
4298 9501 5.109210 CGTATCTATGAGGTTCTTGTGCAA 58.891 41.667 0.00 0.00 0.00 4.08
4329 9532 3.197983 GGTACACTCTAAACCTGCTCCAT 59.802 47.826 0.00 0.00 0.00 3.41
4368 9571 1.067693 GTTACTTTGGCGCATTTGGC 58.932 50.000 10.83 0.00 39.90 4.52
4386 9589 6.435277 AGTGCAAAATCCACATCTCTTTATGT 59.565 34.615 0.00 0.00 40.75 2.29
4396 9599 5.471556 TCAATGAAGTGCAAAATCCACAT 57.528 34.783 0.00 0.00 35.69 3.21
4399 9602 5.531634 GAGTTCAATGAAGTGCAAAATCCA 58.468 37.500 8.21 0.00 0.00 3.41
4400 9603 4.618489 CGAGTTCAATGAAGTGCAAAATCC 59.382 41.667 8.21 0.00 0.00 3.01
4401 9604 4.089065 GCGAGTTCAATGAAGTGCAAAATC 59.911 41.667 8.21 0.00 0.00 2.17
4402 9605 3.983344 GCGAGTTCAATGAAGTGCAAAAT 59.017 39.130 8.21 0.00 0.00 1.82
4419 9622 2.851263 TGTCCATTTGGTAAGCGAGT 57.149 45.000 0.00 0.00 36.34 4.18
4423 9626 2.097466 CGGTCATGTCCATTTGGTAAGC 59.903 50.000 9.71 0.00 36.34 3.09
4437 9640 0.460987 GCTCCTCTCCAACGGTCATG 60.461 60.000 0.00 0.00 0.00 3.07
4438 9641 1.901085 GCTCCTCTCCAACGGTCAT 59.099 57.895 0.00 0.00 0.00 3.06
4439 9642 2.636412 CGCTCCTCTCCAACGGTCA 61.636 63.158 0.00 0.00 0.00 4.02
4440 9643 2.182030 CGCTCCTCTCCAACGGTC 59.818 66.667 0.00 0.00 0.00 4.79
4441 9644 4.070552 GCGCTCCTCTCCAACGGT 62.071 66.667 0.00 0.00 0.00 4.83
4443 9646 2.202676 GAGCGCTCCTCTCCAACG 60.203 66.667 27.22 0.00 37.60 4.10
4444 9647 2.202676 CGAGCGCTCCTCTCCAAC 60.203 66.667 30.66 4.24 38.49 3.77
4445 9648 3.452786 CCGAGCGCTCCTCTCCAA 61.453 66.667 30.66 0.00 38.49 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.