Multiple sequence alignment - TraesCS7D01G344200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G344200 chr7D 100.000 4266 0 0 1 4266 440974803 440979068 0.000000e+00 7878.0
1 TraesCS7D01G344200 chr7D 90.229 1269 57 23 423 1689 440592192 440593395 0.000000e+00 1594.0
2 TraesCS7D01G344200 chr7D 94.433 970 47 3 2449 3412 440594073 440595041 0.000000e+00 1485.0
3 TraesCS7D01G344200 chr7D 89.818 658 52 5 1784 2435 440593440 440594088 0.000000e+00 830.0
4 TraesCS7D01G344200 chr7D 88.281 128 12 3 4070 4197 91710646 91710522 2.660000e-32 150.0
5 TraesCS7D01G344200 chr7D 88.618 123 12 2 4070 4190 611052879 611053001 9.560000e-32 148.0
6 TraesCS7D01G344200 chr7D 81.383 188 20 4 121 306 440591708 440591882 5.750000e-29 139.0
7 TraesCS7D01G344200 chr7A 94.410 2433 84 21 1785 4188 492266661 492269070 0.000000e+00 3692.0
8 TraesCS7D01G344200 chr7A 94.715 738 29 6 966 1700 492265898 492266628 0.000000e+00 1138.0
9 TraesCS7D01G344200 chr7A 81.801 522 50 19 422 901 492265048 492265566 3.090000e-106 396.0
10 TraesCS7D01G344200 chr7A 87.500 128 15 1 4070 4196 494129321 494129448 3.440000e-31 147.0
11 TraesCS7D01G344200 chr7B 92.277 1502 100 9 2449 3946 458452117 458453606 0.000000e+00 2117.0
12 TraesCS7D01G344200 chr7B 92.642 965 48 3 2449 3412 458449757 458450699 0.000000e+00 1367.0
13 TraesCS7D01G344200 chr7B 92.041 779 34 12 923 1700 458448341 458449092 0.000000e+00 1070.0
14 TraesCS7D01G344200 chr7B 86.823 812 42 21 1486 2288 458451126 458451881 0.000000e+00 846.0
15 TraesCS7D01G344200 chr7B 89.346 657 57 3 1784 2435 458449124 458449772 0.000000e+00 813.0
16 TraesCS7D01G344200 chr7B 90.856 514 21 12 420 932 458447425 458447913 0.000000e+00 665.0
17 TraesCS7D01G344200 chr7B 90.189 265 22 3 2173 2435 458451870 458452132 4.080000e-90 342.0
18 TraesCS7D01G344200 chr7B 78.571 280 38 6 121 398 458446938 458447197 9.490000e-37 165.0
19 TraesCS7D01G344200 chr5B 79.897 388 68 6 2 388 332962934 332963312 4.200000e-70 276.0
20 TraesCS7D01G344200 chr5B 91.736 121 9 1 4070 4190 330415638 330415757 2.640000e-37 167.0
21 TraesCS7D01G344200 chr5B 88.976 127 13 1 4070 4195 555244004 555244130 5.710000e-34 156.0
22 TraesCS7D01G344200 chr5D 78.056 360 61 10 48 403 292157734 292158079 1.200000e-50 211.0
23 TraesCS7D01G344200 chr5D 92.500 120 9 0 4070 4189 7723712 7723593 5.670000e-39 172.0
24 TraesCS7D01G344200 chr6B 89.062 128 13 1 4070 4196 497897421 497897294 1.590000e-34 158.0
25 TraesCS7D01G344200 chr6D 89.516 124 10 2 4070 4190 336534186 336534309 2.050000e-33 154.0
26 TraesCS7D01G344200 chr6D 86.957 69 8 1 4196 4264 327986409 327986476 4.570000e-10 76.8
27 TraesCS7D01G344200 chr3B 89.256 121 12 1 4070 4189 15837254 15837374 2.660000e-32 150.0
28 TraesCS7D01G344200 chr4D 74.909 275 64 5 35 307 74367165 74366894 2.080000e-23 121.0
29 TraesCS7D01G344200 chr4D 86.765 68 8 1 4197 4264 36577090 36577156 1.650000e-09 75.0
30 TraesCS7D01G344200 chr6A 95.455 66 2 1 581 646 455734186 455734250 2.100000e-18 104.0
31 TraesCS7D01G344200 chr1D 86.957 69 8 1 4196 4264 114114328 114114261 4.570000e-10 76.8
32 TraesCS7D01G344200 chr5A 86.765 68 8 1 4197 4264 562973653 562973719 1.650000e-09 75.0
33 TraesCS7D01G344200 chr4A 86.765 68 8 1 4197 4264 534041831 534041897 1.650000e-09 75.0
34 TraesCS7D01G344200 chr4A 81.111 90 10 6 4177 4264 216435993 216436077 9.900000e-07 65.8
35 TraesCS7D01G344200 chr2D 74.129 201 42 9 170 370 194656051 194656241 1.650000e-09 75.0
36 TraesCS7D01G344200 chr2D 85.294 68 9 1 4197 4264 575691635 575691569 7.650000e-08 69.4
37 TraesCS7D01G344200 chr2D 86.441 59 7 1 238 295 510620250 510620192 3.560000e-06 63.9
38 TraesCS7D01G344200 chr2A 86.765 68 8 1 4197 4264 11987394 11987460 1.650000e-09 75.0
39 TraesCS7D01G344200 chrUn 84.848 66 9 1 4198 4263 83250914 83250850 9.900000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G344200 chr7D 440974803 440979068 4265 False 7878.000 7878 100.000000 1 4266 1 chr7D.!!$F1 4265
1 TraesCS7D01G344200 chr7D 440591708 440595041 3333 False 1012.000 1594 88.965750 121 3412 4 chr7D.!!$F3 3291
2 TraesCS7D01G344200 chr7A 492265048 492269070 4022 False 1742.000 3692 90.308667 422 4188 3 chr7A.!!$F2 3766
3 TraesCS7D01G344200 chr7B 458446938 458453606 6668 False 923.125 2117 89.093125 121 3946 8 chr7B.!!$F1 3825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.109873 CACGTGTCCTCGTAGTCACC 60.110 60.0 7.58 0.00 42.27 4.02 F
63 64 0.167689 GTGTCCTCGTAGTCACCGTC 59.832 60.0 0.00 0.00 0.00 4.79 F
99 100 0.313672 CACTAGCAGGATCGGAGCTC 59.686 60.0 4.71 4.71 39.68 4.09 F
796 1073 0.461548 GTCATCGATCAGACCCAGCA 59.538 55.0 0.00 0.00 0.00 4.41 F
2152 5124 0.404040 ATCAAGGCGGGAAAACCTCA 59.596 50.0 0.00 0.00 34.31 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 4742 0.389391 CCCGTACAGGCGATTGATCT 59.611 55.00 0.0 0.0 39.21 2.75 R
1773 4743 0.600255 CCCCGTACAGGCGATTGATC 60.600 60.00 0.0 0.0 39.21 2.92 R
1782 4752 0.683504 AGTCTACTGCCCCGTACAGG 60.684 60.00 0.0 0.0 39.55 4.00 R
2249 5226 3.805422 ACGAACAAAACGACAAGATAGCA 59.195 39.13 0.0 0.0 34.70 3.49 R
3549 6662 0.108585 TCTCGAAGGGCAAAAGCAGT 59.891 50.00 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.674380 GCTCTGGCTTGGTGTGGG 60.674 66.667 0.00 0.00 35.22 4.61
19 20 2.839098 CTCTGGCTTGGTGTGGGT 59.161 61.111 0.00 0.00 0.00 4.51
20 21 1.151450 CTCTGGCTTGGTGTGGGTT 59.849 57.895 0.00 0.00 0.00 4.11
21 22 0.468029 CTCTGGCTTGGTGTGGGTTT 60.468 55.000 0.00 0.00 0.00 3.27
22 23 0.847373 TCTGGCTTGGTGTGGGTTTA 59.153 50.000 0.00 0.00 0.00 2.01
23 24 1.427368 TCTGGCTTGGTGTGGGTTTAT 59.573 47.619 0.00 0.00 0.00 1.40
24 25 2.158385 TCTGGCTTGGTGTGGGTTTATT 60.158 45.455 0.00 0.00 0.00 1.40
25 26 1.967066 TGGCTTGGTGTGGGTTTATTG 59.033 47.619 0.00 0.00 0.00 1.90
26 27 1.275010 GGCTTGGTGTGGGTTTATTGG 59.725 52.381 0.00 0.00 0.00 3.16
27 28 1.967779 GCTTGGTGTGGGTTTATTGGT 59.032 47.619 0.00 0.00 0.00 3.67
28 29 2.029380 GCTTGGTGTGGGTTTATTGGTC 60.029 50.000 0.00 0.00 0.00 4.02
29 30 3.496331 CTTGGTGTGGGTTTATTGGTCT 58.504 45.455 0.00 0.00 0.00 3.85
30 31 3.149005 TGGTGTGGGTTTATTGGTCTC 57.851 47.619 0.00 0.00 0.00 3.36
31 32 2.224917 TGGTGTGGGTTTATTGGTCTCC 60.225 50.000 0.00 0.00 0.00 3.71
32 33 2.041216 GGTGTGGGTTTATTGGTCTCCT 59.959 50.000 0.00 0.00 0.00 3.69
33 34 3.264964 GGTGTGGGTTTATTGGTCTCCTA 59.735 47.826 0.00 0.00 0.00 2.94
34 35 4.079958 GGTGTGGGTTTATTGGTCTCCTAT 60.080 45.833 0.00 0.00 0.00 2.57
35 36 5.123936 GTGTGGGTTTATTGGTCTCCTATC 58.876 45.833 0.00 0.00 0.00 2.08
36 37 4.785914 TGTGGGTTTATTGGTCTCCTATCA 59.214 41.667 0.00 0.00 0.00 2.15
37 38 5.431731 TGTGGGTTTATTGGTCTCCTATCAT 59.568 40.000 0.00 0.00 0.00 2.45
38 39 6.069088 TGTGGGTTTATTGGTCTCCTATCATT 60.069 38.462 0.00 0.00 0.00 2.57
39 40 6.833933 GTGGGTTTATTGGTCTCCTATCATTT 59.166 38.462 0.00 0.00 0.00 2.32
40 41 7.996644 GTGGGTTTATTGGTCTCCTATCATTTA 59.003 37.037 0.00 0.00 0.00 1.40
41 42 7.996644 TGGGTTTATTGGTCTCCTATCATTTAC 59.003 37.037 0.00 0.00 0.00 2.01
42 43 7.996644 GGGTTTATTGGTCTCCTATCATTTACA 59.003 37.037 0.00 0.00 0.00 2.41
43 44 8.837389 GGTTTATTGGTCTCCTATCATTTACAC 58.163 37.037 0.00 0.00 0.00 2.90
44 45 8.548721 GTTTATTGGTCTCCTATCATTTACACG 58.451 37.037 0.00 0.00 0.00 4.49
45 46 5.670792 TTGGTCTCCTATCATTTACACGT 57.329 39.130 0.00 0.00 0.00 4.49
46 47 5.006153 TGGTCTCCTATCATTTACACGTG 57.994 43.478 15.48 15.48 0.00 4.49
47 48 4.464951 TGGTCTCCTATCATTTACACGTGT 59.535 41.667 26.52 26.52 0.00 4.49
48 49 5.041940 GGTCTCCTATCATTTACACGTGTC 58.958 45.833 27.16 5.02 0.00 3.67
49 50 5.041940 GTCTCCTATCATTTACACGTGTCC 58.958 45.833 27.16 0.00 0.00 4.02
50 51 4.954202 TCTCCTATCATTTACACGTGTCCT 59.046 41.667 27.16 8.17 0.00 3.85
51 52 5.067413 TCTCCTATCATTTACACGTGTCCTC 59.933 44.000 27.16 0.00 0.00 3.71
52 53 4.042398 CCTATCATTTACACGTGTCCTCG 58.958 47.826 27.16 12.85 0.00 4.63
53 54 3.587797 ATCATTTACACGTGTCCTCGT 57.412 42.857 27.16 5.51 45.10 4.18
54 55 4.707030 ATCATTTACACGTGTCCTCGTA 57.293 40.909 27.16 2.88 42.27 3.43
55 56 4.087510 TCATTTACACGTGTCCTCGTAG 57.912 45.455 27.16 9.98 42.27 3.51
56 57 3.503363 TCATTTACACGTGTCCTCGTAGT 59.497 43.478 27.16 0.00 42.27 2.73
57 58 3.542712 TTTACACGTGTCCTCGTAGTC 57.457 47.619 27.16 0.00 42.27 2.59
58 59 2.168326 TACACGTGTCCTCGTAGTCA 57.832 50.000 27.16 0.00 42.27 3.41
59 60 0.590195 ACACGTGTCCTCGTAGTCAC 59.410 55.000 17.22 0.00 42.27 3.67
60 61 0.109873 CACGTGTCCTCGTAGTCACC 60.110 60.000 7.58 0.00 42.27 4.02
61 62 1.134075 CGTGTCCTCGTAGTCACCG 59.866 63.158 0.00 0.00 0.00 4.94
62 63 1.572085 CGTGTCCTCGTAGTCACCGT 61.572 60.000 0.00 0.00 0.00 4.83
63 64 0.167689 GTGTCCTCGTAGTCACCGTC 59.832 60.000 0.00 0.00 0.00 4.79
64 65 0.957395 TGTCCTCGTAGTCACCGTCC 60.957 60.000 0.00 0.00 0.00 4.79
65 66 0.676151 GTCCTCGTAGTCACCGTCCT 60.676 60.000 0.00 0.00 0.00 3.85
66 67 0.392193 TCCTCGTAGTCACCGTCCTC 60.392 60.000 0.00 0.00 0.00 3.71
67 68 1.703438 CCTCGTAGTCACCGTCCTCG 61.703 65.000 0.00 0.00 0.00 4.63
77 78 2.513204 CGTCCTCGGTCCTCGCTA 60.513 66.667 0.00 0.00 39.05 4.26
78 79 1.892862 CGTCCTCGGTCCTCGCTAT 60.893 63.158 0.00 0.00 39.05 2.97
79 80 1.843734 CGTCCTCGGTCCTCGCTATC 61.844 65.000 0.00 0.00 39.05 2.08
80 81 1.228184 TCCTCGGTCCTCGCTATCC 60.228 63.158 0.00 0.00 39.05 2.59
81 82 1.528542 CCTCGGTCCTCGCTATCCA 60.529 63.158 0.00 0.00 39.05 3.41
82 83 1.655329 CTCGGTCCTCGCTATCCAC 59.345 63.158 0.00 0.00 39.05 4.02
83 84 0.820074 CTCGGTCCTCGCTATCCACT 60.820 60.000 0.00 0.00 39.05 4.00
84 85 0.471191 TCGGTCCTCGCTATCCACTA 59.529 55.000 0.00 0.00 39.05 2.74
85 86 0.875728 CGGTCCTCGCTATCCACTAG 59.124 60.000 0.00 0.00 0.00 2.57
95 96 2.796557 CTATCCACTAGCAGGATCGGA 58.203 52.381 17.91 3.81 44.54 4.55
96 97 1.626686 ATCCACTAGCAGGATCGGAG 58.373 55.000 10.70 0.00 42.07 4.63
97 98 1.109920 TCCACTAGCAGGATCGGAGC 61.110 60.000 0.52 0.00 0.00 4.70
98 99 1.112315 CCACTAGCAGGATCGGAGCT 61.112 60.000 9.62 9.62 42.14 4.09
99 100 0.313672 CACTAGCAGGATCGGAGCTC 59.686 60.000 4.71 4.71 39.68 4.09
100 101 0.825840 ACTAGCAGGATCGGAGCTCC 60.826 60.000 23.79 23.79 39.68 4.70
101 102 0.825425 CTAGCAGGATCGGAGCTCCA 60.825 60.000 31.67 19.07 39.68 3.86
102 103 1.109920 TAGCAGGATCGGAGCTCCAC 61.110 60.000 31.67 20.73 39.68 4.02
103 104 2.415010 CAGGATCGGAGCTCCACG 59.585 66.667 31.67 18.88 35.08 4.94
104 105 2.835431 AGGATCGGAGCTCCACGG 60.835 66.667 31.67 16.23 35.08 4.94
105 106 3.148279 GGATCGGAGCTCCACGGT 61.148 66.667 31.67 15.71 35.14 4.83
106 107 2.413765 GATCGGAGCTCCACGGTC 59.586 66.667 31.67 20.11 39.41 4.79
111 112 4.285851 GAGCTCCACGGTCCAAAG 57.714 61.111 0.87 0.00 34.06 2.77
112 113 2.032681 AGCTCCACGGTCCAAAGC 59.967 61.111 0.00 0.00 0.00 3.51
113 114 2.281484 GCTCCACGGTCCAAAGCA 60.281 61.111 0.00 0.00 33.21 3.91
114 115 1.896660 GCTCCACGGTCCAAAGCAA 60.897 57.895 0.00 0.00 33.21 3.91
115 116 1.244019 GCTCCACGGTCCAAAGCAAT 61.244 55.000 0.00 0.00 33.21 3.56
116 117 0.523072 CTCCACGGTCCAAAGCAATG 59.477 55.000 0.00 0.00 0.00 2.82
117 118 0.893270 TCCACGGTCCAAAGCAATGG 60.893 55.000 1.50 1.50 42.12 3.16
118 119 1.586028 CACGGTCCAAAGCAATGGG 59.414 57.895 7.82 0.00 41.05 4.00
119 120 1.606313 ACGGTCCAAAGCAATGGGG 60.606 57.895 7.82 1.65 41.05 4.96
122 123 1.593265 GTCCAAAGCAATGGGGCAG 59.407 57.895 7.82 0.00 41.05 4.85
126 127 1.074775 AAAGCAATGGGGCAGACGA 59.925 52.632 0.00 0.00 35.83 4.20
150 152 1.122019 CCTCCCGGCTATAGCTTGGT 61.122 60.000 23.53 0.00 41.70 3.67
153 155 1.045407 CCCGGCTATAGCTTGGTGTA 58.955 55.000 23.53 0.00 41.70 2.90
164 166 1.153353 CTTGGTGTATTCGGTGCGTT 58.847 50.000 0.00 0.00 0.00 4.84
165 167 2.339418 CTTGGTGTATTCGGTGCGTTA 58.661 47.619 0.00 0.00 0.00 3.18
170 172 2.343544 GTGTATTCGGTGCGTTAGTGTC 59.656 50.000 0.00 0.00 0.00 3.67
173 175 0.669619 TTCGGTGCGTTAGTGTCTGA 59.330 50.000 0.00 0.00 0.00 3.27
186 188 6.571731 CGTTAGTGTCTGATGGTTTCCTAAGA 60.572 42.308 0.00 0.00 0.00 2.10
208 210 3.942539 GGCACGCTTCAATTTTTGTTT 57.057 38.095 0.00 0.00 0.00 2.83
209 211 3.606422 GGCACGCTTCAATTTTTGTTTG 58.394 40.909 0.00 0.00 0.00 2.93
227 229 5.516044 TGTTTGATAGTCTAGGTAGCCTCA 58.484 41.667 0.00 0.00 34.61 3.86
233 235 7.295340 TGATAGTCTAGGTAGCCTCATGTTAA 58.705 38.462 0.00 0.00 34.61 2.01
238 240 6.535508 GTCTAGGTAGCCTCATGTTAAGTTTG 59.464 42.308 0.00 0.00 34.61 2.93
239 241 4.589908 AGGTAGCCTCATGTTAAGTTTGG 58.410 43.478 0.00 0.00 0.00 3.28
241 243 4.156008 GGTAGCCTCATGTTAAGTTTGGTG 59.844 45.833 0.00 0.00 0.00 4.17
245 247 3.573967 CCTCATGTTAAGTTTGGTGCCTT 59.426 43.478 0.00 0.00 0.00 4.35
246 248 4.321230 CCTCATGTTAAGTTTGGTGCCTTC 60.321 45.833 0.00 0.00 0.00 3.46
254 257 3.096092 AGTTTGGTGCCTTCTGTTTTCA 58.904 40.909 0.00 0.00 0.00 2.69
295 298 2.599281 TTCTCGCCACCCACTCGA 60.599 61.111 0.00 0.00 0.00 4.04
300 303 1.671054 CGCCACCCACTCGATTGTT 60.671 57.895 1.83 0.00 0.00 2.83
301 304 1.875963 GCCACCCACTCGATTGTTG 59.124 57.895 1.83 0.00 0.00 3.33
302 305 0.889186 GCCACCCACTCGATTGTTGT 60.889 55.000 1.83 0.00 0.00 3.32
303 306 1.604604 CCACCCACTCGATTGTTGTT 58.395 50.000 1.83 0.00 0.00 2.83
304 307 1.953686 CCACCCACTCGATTGTTGTTT 59.046 47.619 1.83 0.00 0.00 2.83
305 308 2.360801 CCACCCACTCGATTGTTGTTTT 59.639 45.455 1.83 0.00 0.00 2.43
306 309 3.181480 CCACCCACTCGATTGTTGTTTTT 60.181 43.478 1.83 0.00 0.00 1.94
311 314 5.350091 CCCACTCGATTGTTGTTTTTGTTTT 59.650 36.000 1.83 0.00 0.00 2.43
334 337 4.416505 TTTTGTTTTGGCTTGCTTGTTG 57.583 36.364 0.00 0.00 0.00 3.33
355 543 2.289565 GGGGGTTTCTTCATCGTCATC 58.710 52.381 0.00 0.00 0.00 2.92
371 559 1.478916 TCATCTTGTATCGGTTCGGCA 59.521 47.619 0.00 0.00 0.00 5.69
377 565 1.206132 TGTATCGGTTCGGCAGTTCAT 59.794 47.619 0.00 0.00 0.00 2.57
419 617 3.132925 GGCAACGTGTAAGGTGTTTCTA 58.867 45.455 0.00 0.00 33.73 2.10
420 618 3.560896 GGCAACGTGTAAGGTGTTTCTAA 59.439 43.478 0.00 0.00 33.73 2.10
480 690 2.636830 CCGCATCTTCTCTTGTCCAAT 58.363 47.619 0.00 0.00 0.00 3.16
521 762 1.302192 TTAGAACCAGTGGGCGTGC 60.302 57.895 15.21 0.00 37.90 5.34
529 770 1.753078 AGTGGGCGTGCGAGATCTA 60.753 57.895 0.00 0.00 0.00 1.98
531 772 0.872021 GTGGGCGTGCGAGATCTAAG 60.872 60.000 0.00 0.00 0.00 2.18
532 773 1.320344 TGGGCGTGCGAGATCTAAGT 61.320 55.000 0.00 0.00 0.00 2.24
533 774 0.666913 GGGCGTGCGAGATCTAAGTA 59.333 55.000 0.00 0.00 0.00 2.24
534 775 1.599916 GGGCGTGCGAGATCTAAGTAC 60.600 57.143 0.00 1.94 0.00 2.73
535 776 1.065102 GGCGTGCGAGATCTAAGTACA 59.935 52.381 15.48 0.65 0.00 2.90
536 777 2.287668 GGCGTGCGAGATCTAAGTACAT 60.288 50.000 15.48 0.00 0.00 2.29
537 778 2.974536 GCGTGCGAGATCTAAGTACATC 59.025 50.000 15.48 6.24 0.00 3.06
538 779 3.548214 GCGTGCGAGATCTAAGTACATCA 60.548 47.826 15.48 0.00 0.00 3.07
539 780 4.788690 CGTGCGAGATCTAAGTACATCAT 58.211 43.478 15.48 0.00 0.00 2.45
540 781 4.848841 CGTGCGAGATCTAAGTACATCATC 59.151 45.833 15.48 0.00 0.00 2.92
541 782 5.560953 CGTGCGAGATCTAAGTACATCATCA 60.561 44.000 15.48 0.00 0.00 3.07
542 783 6.385843 GTGCGAGATCTAAGTACATCATCAT 58.614 40.000 12.00 0.00 0.00 2.45
543 784 6.526325 GTGCGAGATCTAAGTACATCATCATC 59.474 42.308 12.00 0.00 0.00 2.92
544 785 6.207417 TGCGAGATCTAAGTACATCATCATCA 59.793 38.462 0.00 0.00 0.00 3.07
545 786 7.094032 TGCGAGATCTAAGTACATCATCATCAT 60.094 37.037 0.00 0.00 0.00 2.45
546 787 7.220491 GCGAGATCTAAGTACATCATCATCATG 59.780 40.741 0.00 0.00 0.00 3.07
547 788 8.242739 CGAGATCTAAGTACATCATCATCATGT 58.757 37.037 0.00 0.00 38.13 3.21
548 789 9.571810 GAGATCTAAGTACATCATCATCATGTC 57.428 37.037 0.00 0.00 35.95 3.06
549 790 9.086758 AGATCTAAGTACATCATCATCATGTCA 57.913 33.333 0.00 0.00 35.95 3.58
550 791 9.138062 GATCTAAGTACATCATCATCATGTCAC 57.862 37.037 0.00 0.00 35.95 3.67
551 792 8.010733 TCTAAGTACATCATCATCATGTCACA 57.989 34.615 0.00 0.00 35.95 3.58
552 793 8.645110 TCTAAGTACATCATCATCATGTCACAT 58.355 33.333 0.00 0.00 35.95 3.21
553 794 7.725818 AAGTACATCATCATCATGTCACATC 57.274 36.000 0.00 0.00 35.95 3.06
554 795 6.228995 AGTACATCATCATCATGTCACATCC 58.771 40.000 0.00 0.00 35.95 3.51
555 796 5.306114 ACATCATCATCATGTCACATCCT 57.694 39.130 0.00 0.00 27.49 3.24
556 797 5.306394 ACATCATCATCATGTCACATCCTC 58.694 41.667 0.00 0.00 27.49 3.71
557 798 4.347360 TCATCATCATGTCACATCCTCC 57.653 45.455 0.00 0.00 0.00 4.30
558 799 3.712733 TCATCATCATGTCACATCCTCCA 59.287 43.478 0.00 0.00 0.00 3.86
579 820 1.138047 ATCGACGGCGTTGATTCGTC 61.138 55.000 31.70 8.86 46.52 4.20
613 854 4.728102 CAACGGGGCGAGCACGTA 62.728 66.667 15.11 0.00 40.31 3.57
614 855 3.993584 AACGGGGCGAGCACGTAA 61.994 61.111 15.11 0.00 40.31 3.18
709 955 2.483877 CGAGACACAGCCAGCATTAAAA 59.516 45.455 0.00 0.00 0.00 1.52
710 956 3.667960 CGAGACACAGCCAGCATTAAAAC 60.668 47.826 0.00 0.00 0.00 2.43
745 1005 1.003718 AGAGGCCGTTTTTCTCCGG 60.004 57.895 0.00 0.00 46.90 5.14
757 1017 4.473520 CTCCGGACGGCAAGCCAT 62.474 66.667 12.19 0.00 35.37 4.40
796 1073 0.461548 GTCATCGATCAGACCCAGCA 59.538 55.000 0.00 0.00 0.00 4.41
837 1114 1.549170 ACTCCGTCCGCTCAATTAAGT 59.451 47.619 0.00 0.00 0.00 2.24
854 1131 1.231751 AGTGATCTCCCCTCTCCCCA 61.232 60.000 0.00 0.00 0.00 4.96
1025 1745 3.474034 GCAGTCGCACTCGCACTC 61.474 66.667 0.00 0.00 38.40 3.51
1026 1746 3.168604 CAGTCGCACTCGCACTCG 61.169 66.667 0.00 0.00 38.40 4.18
1031 1751 3.474034 GCACTCGCACTCGCAGTC 61.474 66.667 0.00 0.00 38.40 3.51
1032 1752 3.168604 CACTCGCACTCGCAGTCG 61.169 66.667 0.00 0.00 38.40 4.18
1173 1893 2.490217 GCGCTCCTCTGCTACGAA 59.510 61.111 0.00 0.00 0.00 3.85
1280 2000 4.849329 CGAGTACCTGGGCGACGC 62.849 72.222 12.43 12.43 0.00 5.19
1302 2022 2.262915 CTCACCTGCCTCGTGTCC 59.737 66.667 0.00 0.00 32.86 4.02
1325 2045 3.284711 AGGTCTTCCTCACCTACCG 57.715 57.895 0.00 0.00 42.91 4.02
1473 2193 4.803098 ACAGGTTACTAGTAACTGCCAG 57.197 45.455 33.70 21.82 43.58 4.85
1484 2215 4.528920 AGTAACTGCCAGTCTCCTACTAG 58.471 47.826 0.00 0.00 35.76 2.57
1614 4581 3.194329 TGCTTTGTGGTGTGTCATTTTGA 59.806 39.130 0.00 0.00 0.00 2.69
1727 4697 2.689471 ACGGGTGAAAGTAAACCAAACC 59.311 45.455 0.00 0.00 38.27 3.27
1756 4726 8.130671 TCCTTATATACACACATAGTAAGGCC 57.869 38.462 0.00 0.00 37.61 5.19
1757 4727 7.954056 TCCTTATATACACACATAGTAAGGCCT 59.046 37.037 0.00 0.00 37.61 5.19
1759 4729 8.715190 TTATATACACACATAGTAAGGCCTGA 57.285 34.615 5.69 0.00 0.00 3.86
1760 4730 7.798710 ATATACACACATAGTAAGGCCTGAT 57.201 36.000 5.69 0.00 0.00 2.90
1761 4731 4.844349 ACACACATAGTAAGGCCTGATT 57.156 40.909 5.69 0.00 0.00 2.57
1762 4732 4.770795 ACACACATAGTAAGGCCTGATTC 58.229 43.478 5.69 0.00 0.00 2.52
1763 4733 4.225042 ACACACATAGTAAGGCCTGATTCA 59.775 41.667 5.69 0.00 0.00 2.57
1764 4734 5.185454 CACACATAGTAAGGCCTGATTCAA 58.815 41.667 5.69 0.00 0.00 2.69
1765 4735 5.647658 CACACATAGTAAGGCCTGATTCAAA 59.352 40.000 5.69 0.00 0.00 2.69
1766 4736 6.150976 CACACATAGTAAGGCCTGATTCAAAA 59.849 38.462 5.69 0.00 0.00 2.44
1767 4737 6.719370 ACACATAGTAAGGCCTGATTCAAAAA 59.281 34.615 5.69 0.00 0.00 1.94
1873 4843 5.138276 CCACCATGGATCTCAGATTGAAAT 58.862 41.667 21.47 0.00 40.96 2.17
1931 4902 7.441890 TTCAAACGGCATTTGTAATTCTCTA 57.558 32.000 5.90 0.00 46.70 2.43
1937 4908 4.873827 GGCATTTGTAATTCTCTACCGTGA 59.126 41.667 0.00 0.00 0.00 4.35
2016 4987 5.154418 CCATCTCTTTCTATTCCCCTCTCT 58.846 45.833 0.00 0.00 0.00 3.10
2152 5124 0.404040 ATCAAGGCGGGAAAACCTCA 59.596 50.000 0.00 0.00 34.31 3.86
2190 5167 8.207521 CATTTCCAAATGGTTGTTGTTTAAGT 57.792 30.769 4.36 0.00 41.54 2.24
2269 5352 5.748592 ACTTGCTATCTTGTCGTTTTGTTC 58.251 37.500 0.00 0.00 0.00 3.18
2346 5429 5.579511 CGTTTCGACTCCACCTTATTATGTT 59.420 40.000 0.00 0.00 0.00 2.71
2354 5437 9.391006 GACTCCACCTTATTATGTTCATTTACA 57.609 33.333 0.00 0.00 0.00 2.41
2384 5467 8.824783 TCTTTTCATGGGATTTCATAATGGTTT 58.175 29.630 0.00 0.00 0.00 3.27
2417 5500 7.448748 AGAAATAGTTTTTGCTTATGTCGGT 57.551 32.000 0.00 0.00 0.00 4.69
2528 5611 9.490379 CCCACTTCTATGGTATTGTATTAGTTC 57.510 37.037 0.00 0.00 38.16 3.01
2945 6035 6.887626 AATAGGTTTTTCGAAAGTTGGCTA 57.112 33.333 10.98 0.00 0.00 3.93
3121 6211 3.666902 GCGCGACTTATGCTCAAAAGAAA 60.667 43.478 12.10 0.00 0.00 2.52
3133 6223 6.233434 TGCTCAAAAGAAAGAGATAGCTTCA 58.767 36.000 0.00 0.00 33.74 3.02
3282 6386 4.473199 CAGTGAAATGCTGAGACATTGTG 58.527 43.478 0.00 0.00 40.12 3.33
3304 6408 1.063174 GCGCAACAAATGTTTTTGCCA 59.937 42.857 0.30 0.00 45.01 4.92
3353 6457 6.437928 CATTACATGTGTGTTGTTAAGCTGT 58.562 36.000 9.11 0.00 39.77 4.40
3489 6602 9.817809 ATACTTTGGTGATATTAGCATATACCG 57.182 33.333 0.00 0.00 29.78 4.02
3534 6647 3.225940 CAGCCAACTTCTTCTTTTCCCT 58.774 45.455 0.00 0.00 0.00 4.20
3549 6662 1.942776 TCCCTGAGCAGAGTGAATGA 58.057 50.000 0.00 0.00 0.00 2.57
3566 6679 0.179032 TGACTGCTTTTGCCCTTCGA 60.179 50.000 0.00 0.00 46.87 3.71
3572 6685 1.160137 CTTTTGCCCTTCGAGAGTGG 58.840 55.000 0.00 0.00 0.00 4.00
3729 6843 4.453892 GCCATCCTTGCTGGGGCT 62.454 66.667 0.00 0.00 39.26 5.19
3812 6926 0.952280 GGACGGCTGTATCGAGATGA 59.048 55.000 0.00 0.00 0.00 2.92
4015 7129 2.117423 TGGGAGAGCAGACGACCA 59.883 61.111 0.00 0.00 0.00 4.02
4044 7158 4.379243 AGCTCTTCCCGCACGGTG 62.379 66.667 8.49 3.15 0.00 4.94
4076 7190 4.918201 GCGCCGCCTTGCTCCTAT 62.918 66.667 0.00 0.00 0.00 2.57
4077 7191 2.734591 CGCCGCCTTGCTCCTATA 59.265 61.111 0.00 0.00 0.00 1.31
4079 7193 1.664965 GCCGCCTTGCTCCTATACG 60.665 63.158 0.00 0.00 0.00 3.06
4080 7194 1.006102 CCGCCTTGCTCCTATACGG 60.006 63.158 0.00 0.00 0.00 4.02
4082 7196 1.664965 GCCTTGCTCCTATACGGCG 60.665 63.158 4.80 4.80 0.00 6.46
4083 7197 1.664965 CCTTGCTCCTATACGGCGC 60.665 63.158 6.90 0.00 43.92 6.53
4084 7198 1.364171 CTTGCTCCTATACGGCGCT 59.636 57.895 6.90 0.00 43.99 5.92
4085 7199 0.941463 CTTGCTCCTATACGGCGCTG 60.941 60.000 16.39 16.39 43.99 5.18
4086 7200 2.735100 GCTCCTATACGGCGCTGC 60.735 66.667 18.15 0.00 40.41 5.25
4087 7201 2.728180 CTCCTATACGGCGCTGCA 59.272 61.111 18.15 2.92 0.00 4.41
4089 7203 2.356313 CCTATACGGCGCTGCAGG 60.356 66.667 18.15 16.47 0.00 4.85
4090 7204 3.038417 CTATACGGCGCTGCAGGC 61.038 66.667 18.15 16.58 37.64 4.85
4172 7292 5.750650 CAAACCAATGAATGCAAAAACCTC 58.249 37.500 0.00 0.00 0.00 3.85
4175 7295 3.058450 CAATGAATGCAAAAACCTCGCA 58.942 40.909 0.00 0.00 40.50 5.10
4225 7345 2.252260 GTGCACACGTGTGGCATC 59.748 61.111 40.73 27.74 45.72 3.91
4226 7346 2.110835 TGCACACGTGTGGCATCT 59.889 55.556 40.73 8.82 45.72 2.90
4227 7347 1.525765 TGCACACGTGTGGCATCTT 60.526 52.632 40.73 8.03 45.72 2.40
4228 7348 1.081906 GCACACGTGTGGCATCTTG 60.082 57.895 40.73 20.10 45.72 3.02
4229 7349 1.081906 CACACGTGTGGCATCTTGC 60.082 57.895 35.65 0.00 44.08 4.01
4239 7359 2.470156 GCATCTTGCACATCGTCCA 58.530 52.632 0.00 0.00 44.26 4.02
4240 7360 0.097674 GCATCTTGCACATCGTCCAC 59.902 55.000 0.00 0.00 44.26 4.02
4241 7361 0.371301 CATCTTGCACATCGTCCACG 59.629 55.000 0.00 0.00 41.45 4.94
4242 7362 1.361668 ATCTTGCACATCGTCCACGC 61.362 55.000 0.00 0.00 39.60 5.34
4243 7363 3.353114 CTTGCACATCGTCCACGCG 62.353 63.158 3.53 3.53 39.60 6.01
4244 7364 4.656117 TGCACATCGTCCACGCGT 62.656 61.111 5.58 5.58 39.60 6.01
4245 7365 3.838795 GCACATCGTCCACGCGTC 61.839 66.667 9.86 0.00 39.60 5.19
4246 7366 2.126463 CACATCGTCCACGCGTCT 60.126 61.111 9.86 0.00 39.60 4.18
4247 7367 1.733041 CACATCGTCCACGCGTCTT 60.733 57.895 9.86 0.00 39.60 3.01
4248 7368 1.006571 ACATCGTCCACGCGTCTTT 60.007 52.632 9.86 0.00 39.60 2.52
4249 7369 0.241749 ACATCGTCCACGCGTCTTTA 59.758 50.000 9.86 0.00 39.60 1.85
4250 7370 1.135199 ACATCGTCCACGCGTCTTTAT 60.135 47.619 9.86 0.00 39.60 1.40
4251 7371 1.924524 CATCGTCCACGCGTCTTTATT 59.075 47.619 9.86 0.00 39.60 1.40
4252 7372 2.917701 TCGTCCACGCGTCTTTATTA 57.082 45.000 9.86 0.00 39.60 0.98
4253 7373 3.425577 TCGTCCACGCGTCTTTATTAT 57.574 42.857 9.86 0.00 39.60 1.28
4254 7374 3.365832 TCGTCCACGCGTCTTTATTATC 58.634 45.455 9.86 0.00 39.60 1.75
4255 7375 3.110358 CGTCCACGCGTCTTTATTATCA 58.890 45.455 9.86 0.00 0.00 2.15
4256 7376 3.061403 CGTCCACGCGTCTTTATTATCAC 60.061 47.826 9.86 0.00 0.00 3.06
4257 7377 4.110482 GTCCACGCGTCTTTATTATCACT 58.890 43.478 9.86 0.00 0.00 3.41
4258 7378 4.206609 GTCCACGCGTCTTTATTATCACTC 59.793 45.833 9.86 0.00 0.00 3.51
4259 7379 4.109766 CCACGCGTCTTTATTATCACTCA 58.890 43.478 9.86 0.00 0.00 3.41
4260 7380 4.745125 CCACGCGTCTTTATTATCACTCAT 59.255 41.667 9.86 0.00 0.00 2.90
4261 7381 5.234329 CCACGCGTCTTTATTATCACTCATT 59.766 40.000 9.86 0.00 0.00 2.57
4262 7382 6.238103 CCACGCGTCTTTATTATCACTCATTT 60.238 38.462 9.86 0.00 0.00 2.32
4263 7383 7.180079 CACGCGTCTTTATTATCACTCATTTT 58.820 34.615 9.86 0.00 0.00 1.82
4264 7384 8.325282 CACGCGTCTTTATTATCACTCATTTTA 58.675 33.333 9.86 0.00 0.00 1.52
4265 7385 9.042008 ACGCGTCTTTATTATCACTCATTTTAT 57.958 29.630 5.58 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.674380 CCCACACCAAGCCAGAGC 60.674 66.667 0.00 0.00 40.32 4.09
2 3 0.468029 AAACCCACACCAAGCCAGAG 60.468 55.000 0.00 0.00 0.00 3.35
3 4 0.847373 TAAACCCACACCAAGCCAGA 59.153 50.000 0.00 0.00 0.00 3.86
4 5 1.923356 ATAAACCCACACCAAGCCAG 58.077 50.000 0.00 0.00 0.00 4.85
5 6 1.967066 CAATAAACCCACACCAAGCCA 59.033 47.619 0.00 0.00 0.00 4.75
6 7 1.275010 CCAATAAACCCACACCAAGCC 59.725 52.381 0.00 0.00 0.00 4.35
7 8 1.967779 ACCAATAAACCCACACCAAGC 59.032 47.619 0.00 0.00 0.00 4.01
8 9 3.496331 AGACCAATAAACCCACACCAAG 58.504 45.455 0.00 0.00 0.00 3.61
9 10 3.492337 GAGACCAATAAACCCACACCAA 58.508 45.455 0.00 0.00 0.00 3.67
10 11 2.224917 GGAGACCAATAAACCCACACCA 60.225 50.000 0.00 0.00 0.00 4.17
11 12 2.041216 AGGAGACCAATAAACCCACACC 59.959 50.000 0.00 0.00 0.00 4.16
12 13 3.434940 AGGAGACCAATAAACCCACAC 57.565 47.619 0.00 0.00 0.00 3.82
13 14 4.785914 TGATAGGAGACCAATAAACCCACA 59.214 41.667 0.00 0.00 0.00 4.17
14 15 5.367945 TGATAGGAGACCAATAAACCCAC 57.632 43.478 0.00 0.00 0.00 4.61
15 16 6.590656 AATGATAGGAGACCAATAAACCCA 57.409 37.500 0.00 0.00 0.00 4.51
16 17 7.996644 TGTAAATGATAGGAGACCAATAAACCC 59.003 37.037 0.00 0.00 0.00 4.11
17 18 8.837389 GTGTAAATGATAGGAGACCAATAAACC 58.163 37.037 0.00 0.00 0.00 3.27
18 19 8.548721 CGTGTAAATGATAGGAGACCAATAAAC 58.451 37.037 0.00 0.00 0.00 2.01
19 20 8.262227 ACGTGTAAATGATAGGAGACCAATAAA 58.738 33.333 0.00 0.00 0.00 1.40
20 21 7.709182 CACGTGTAAATGATAGGAGACCAATAA 59.291 37.037 7.58 0.00 0.00 1.40
21 22 7.147794 ACACGTGTAAATGATAGGAGACCAATA 60.148 37.037 21.98 0.00 0.00 1.90
22 23 6.049149 CACGTGTAAATGATAGGAGACCAAT 58.951 40.000 7.58 0.00 0.00 3.16
23 24 5.046878 ACACGTGTAAATGATAGGAGACCAA 60.047 40.000 21.98 0.00 0.00 3.67
24 25 4.464951 ACACGTGTAAATGATAGGAGACCA 59.535 41.667 21.98 0.00 0.00 4.02
25 26 5.007385 ACACGTGTAAATGATAGGAGACC 57.993 43.478 21.98 0.00 0.00 3.85
26 27 5.041940 GGACACGTGTAAATGATAGGAGAC 58.958 45.833 23.44 3.30 0.00 3.36
27 28 4.954202 AGGACACGTGTAAATGATAGGAGA 59.046 41.667 23.44 0.00 0.00 3.71
28 29 5.263968 AGGACACGTGTAAATGATAGGAG 57.736 43.478 23.44 0.00 0.00 3.69
29 30 4.201980 CGAGGACACGTGTAAATGATAGGA 60.202 45.833 23.44 0.00 0.00 2.94
30 31 4.042398 CGAGGACACGTGTAAATGATAGG 58.958 47.826 23.44 0.50 0.00 2.57
31 32 4.669318 ACGAGGACACGTGTAAATGATAG 58.331 43.478 23.44 10.12 44.84 2.08
32 33 4.707030 ACGAGGACACGTGTAAATGATA 57.293 40.909 23.44 0.00 44.84 2.15
33 34 3.587797 ACGAGGACACGTGTAAATGAT 57.412 42.857 23.44 2.94 44.84 2.45
34 35 3.503363 ACTACGAGGACACGTGTAAATGA 59.497 43.478 23.44 4.87 46.02 2.57
35 36 3.829948 ACTACGAGGACACGTGTAAATG 58.170 45.455 23.44 14.47 46.02 2.32
36 37 3.503363 TGACTACGAGGACACGTGTAAAT 59.497 43.478 23.44 10.49 46.02 1.40
37 38 2.877786 TGACTACGAGGACACGTGTAAA 59.122 45.455 23.44 2.68 46.02 2.01
38 39 2.224079 GTGACTACGAGGACACGTGTAA 59.776 50.000 23.44 2.31 46.02 2.41
39 40 1.800586 GTGACTACGAGGACACGTGTA 59.199 52.381 23.44 3.46 46.02 2.90
40 41 0.590195 GTGACTACGAGGACACGTGT 59.410 55.000 23.64 23.64 46.02 4.49
41 42 0.109873 GGTGACTACGAGGACACGTG 60.110 60.000 15.48 15.48 46.02 4.49
43 44 1.134075 CGGTGACTACGAGGACACG 59.866 63.158 0.00 0.00 39.31 4.49
44 45 0.167689 GACGGTGACTACGAGGACAC 59.832 60.000 0.00 0.00 34.93 3.67
45 46 0.957395 GGACGGTGACTACGAGGACA 60.957 60.000 0.00 0.00 34.93 4.02
46 47 0.676151 AGGACGGTGACTACGAGGAC 60.676 60.000 0.00 0.00 34.93 3.85
47 48 0.392193 GAGGACGGTGACTACGAGGA 60.392 60.000 0.00 0.00 34.93 3.71
48 49 1.703438 CGAGGACGGTGACTACGAGG 61.703 65.000 0.00 0.00 35.72 4.63
49 50 1.714414 CGAGGACGGTGACTACGAG 59.286 63.158 0.00 0.00 35.72 4.18
50 51 3.880591 CGAGGACGGTGACTACGA 58.119 61.111 0.00 0.00 35.72 3.43
60 61 1.843734 GATAGCGAGGACCGAGGACG 61.844 65.000 0.00 0.00 41.76 4.79
61 62 1.517210 GGATAGCGAGGACCGAGGAC 61.517 65.000 0.00 0.00 41.76 3.85
62 63 1.228184 GGATAGCGAGGACCGAGGA 60.228 63.158 0.00 0.00 41.76 3.71
63 64 1.528542 TGGATAGCGAGGACCGAGG 60.529 63.158 0.00 0.00 41.76 4.63
64 65 0.820074 AGTGGATAGCGAGGACCGAG 60.820 60.000 0.00 0.00 41.76 4.63
65 66 0.471191 TAGTGGATAGCGAGGACCGA 59.529 55.000 0.00 0.00 41.76 4.69
66 67 0.875728 CTAGTGGATAGCGAGGACCG 59.124 60.000 0.00 0.00 42.21 4.79
75 76 2.752354 CTCCGATCCTGCTAGTGGATAG 59.248 54.545 15.99 15.46 43.68 2.08
76 77 2.796557 CTCCGATCCTGCTAGTGGATA 58.203 52.381 15.99 4.39 43.68 2.59
77 78 1.626686 CTCCGATCCTGCTAGTGGAT 58.373 55.000 15.97 15.97 46.05 3.41
78 79 1.109920 GCTCCGATCCTGCTAGTGGA 61.110 60.000 8.65 8.65 38.06 4.02
79 80 1.112315 AGCTCCGATCCTGCTAGTGG 61.112 60.000 0.65 0.00 35.05 4.00
80 81 0.313672 GAGCTCCGATCCTGCTAGTG 59.686 60.000 0.87 0.00 37.16 2.74
81 82 0.825840 GGAGCTCCGATCCTGCTAGT 60.826 60.000 19.06 0.00 37.16 2.57
82 83 0.825425 TGGAGCTCCGATCCTGCTAG 60.825 60.000 27.43 0.00 39.43 3.42
83 84 1.109920 GTGGAGCTCCGATCCTGCTA 61.110 60.000 27.43 3.73 39.43 3.49
84 85 2.042537 TGGAGCTCCGATCCTGCT 60.043 61.111 27.43 2.02 39.43 4.24
85 86 2.107953 GTGGAGCTCCGATCCTGC 59.892 66.667 27.43 7.81 39.43 4.85
86 87 2.415010 CGTGGAGCTCCGATCCTG 59.585 66.667 27.43 9.51 39.43 3.86
87 88 2.835431 CCGTGGAGCTCCGATCCT 60.835 66.667 27.43 0.00 39.43 3.24
88 89 3.140225 GACCGTGGAGCTCCGATCC 62.140 68.421 27.43 13.93 39.43 3.36
89 90 2.413765 GACCGTGGAGCTCCGATC 59.586 66.667 27.43 17.24 39.43 3.69
90 91 3.148279 GGACCGTGGAGCTCCGAT 61.148 66.667 27.43 12.68 39.43 4.18
91 92 4.671590 TGGACCGTGGAGCTCCGA 62.672 66.667 27.43 14.07 39.43 4.55
92 93 3.234630 TTTGGACCGTGGAGCTCCG 62.235 63.158 27.43 16.22 39.43 4.63
93 94 1.376037 CTTTGGACCGTGGAGCTCC 60.376 63.158 26.78 26.78 0.00 4.70
94 95 2.035442 GCTTTGGACCGTGGAGCTC 61.035 63.158 4.71 4.71 0.00 4.09
95 96 2.032681 GCTTTGGACCGTGGAGCT 59.967 61.111 0.00 0.00 0.00 4.09
96 97 1.244019 ATTGCTTTGGACCGTGGAGC 61.244 55.000 0.00 2.33 0.00 4.70
97 98 0.523072 CATTGCTTTGGACCGTGGAG 59.477 55.000 0.00 0.00 0.00 3.86
98 99 0.893270 CCATTGCTTTGGACCGTGGA 60.893 55.000 0.00 0.00 39.25 4.02
99 100 1.586028 CCATTGCTTTGGACCGTGG 59.414 57.895 0.00 0.00 39.25 4.94
100 101 1.586028 CCCATTGCTTTGGACCGTG 59.414 57.895 7.03 0.00 39.25 4.94
101 102 1.606313 CCCCATTGCTTTGGACCGT 60.606 57.895 7.03 0.00 39.25 4.83
102 103 3.005540 GCCCCATTGCTTTGGACCG 62.006 63.158 7.03 0.00 39.25 4.79
103 104 1.891722 CTGCCCCATTGCTTTGGACC 61.892 60.000 7.03 0.00 39.25 4.46
104 105 0.899717 TCTGCCCCATTGCTTTGGAC 60.900 55.000 7.03 0.65 39.25 4.02
105 106 0.899717 GTCTGCCCCATTGCTTTGGA 60.900 55.000 7.03 0.00 39.25 3.53
106 107 1.593265 GTCTGCCCCATTGCTTTGG 59.407 57.895 0.00 0.00 36.46 3.28
107 108 1.213537 CGTCTGCCCCATTGCTTTG 59.786 57.895 0.00 0.00 0.00 2.77
108 109 0.323725 ATCGTCTGCCCCATTGCTTT 60.324 50.000 0.00 0.00 0.00 3.51
109 110 0.323725 AATCGTCTGCCCCATTGCTT 60.324 50.000 0.00 0.00 0.00 3.91
110 111 1.033746 CAATCGTCTGCCCCATTGCT 61.034 55.000 0.00 0.00 0.00 3.91
111 112 1.434696 CAATCGTCTGCCCCATTGC 59.565 57.895 0.00 0.00 0.00 3.56
112 113 1.434696 GCAATCGTCTGCCCCATTG 59.565 57.895 0.72 0.00 36.25 2.82
113 114 3.924507 GCAATCGTCTGCCCCATT 58.075 55.556 0.72 0.00 36.25 3.16
119 120 2.514824 GGGAGGGCAATCGTCTGC 60.515 66.667 3.32 3.32 41.85 4.26
135 136 3.326747 GAATACACCAAGCTATAGCCGG 58.673 50.000 23.13 23.13 43.38 6.13
150 152 2.229543 AGACACTAACGCACCGAATACA 59.770 45.455 0.00 0.00 0.00 2.29
153 155 1.271379 TCAGACACTAACGCACCGAAT 59.729 47.619 0.00 0.00 0.00 3.34
164 166 5.105877 CGTCTTAGGAAACCATCAGACACTA 60.106 44.000 0.00 0.00 30.42 2.74
165 167 4.322049 CGTCTTAGGAAACCATCAGACACT 60.322 45.833 0.00 0.00 30.42 3.55
170 172 2.280628 GCCGTCTTAGGAAACCATCAG 58.719 52.381 0.00 0.00 0.00 2.90
173 175 1.674817 CGTGCCGTCTTAGGAAACCAT 60.675 52.381 0.00 0.00 0.00 3.55
186 188 1.202359 ACAAAAATTGAAGCGTGCCGT 60.202 42.857 0.00 0.00 0.00 5.68
198 200 8.957466 GGCTACCTAGACTATCAAACAAAAATT 58.043 33.333 0.00 0.00 0.00 1.82
199 201 8.329502 AGGCTACCTAGACTATCAAACAAAAAT 58.670 33.333 0.00 0.00 40.69 1.82
200 202 7.686434 AGGCTACCTAGACTATCAAACAAAAA 58.314 34.615 0.00 0.00 40.69 1.94
201 203 7.038587 TGAGGCTACCTAGACTATCAAACAAAA 60.039 37.037 0.00 0.00 43.10 2.44
202 204 6.439375 TGAGGCTACCTAGACTATCAAACAAA 59.561 38.462 0.00 0.00 43.10 2.83
203 205 5.955959 TGAGGCTACCTAGACTATCAAACAA 59.044 40.000 0.00 0.00 43.10 2.83
204 206 5.516044 TGAGGCTACCTAGACTATCAAACA 58.484 41.667 0.00 0.00 43.10 2.83
205 207 6.041069 ACATGAGGCTACCTAGACTATCAAAC 59.959 42.308 0.00 0.00 43.10 2.93
206 208 6.136857 ACATGAGGCTACCTAGACTATCAAA 58.863 40.000 0.00 0.00 43.10 2.69
207 209 5.706447 ACATGAGGCTACCTAGACTATCAA 58.294 41.667 0.00 0.00 43.10 2.57
208 210 5.326283 ACATGAGGCTACCTAGACTATCA 57.674 43.478 0.00 0.00 43.10 2.15
209 211 7.449086 ACTTAACATGAGGCTACCTAGACTATC 59.551 40.741 0.00 0.00 43.10 2.08
227 229 4.215109 ACAGAAGGCACCAAACTTAACAT 58.785 39.130 0.00 0.00 0.00 2.71
233 235 3.096092 TGAAAACAGAAGGCACCAAACT 58.904 40.909 0.00 0.00 0.00 2.66
238 240 1.615392 AGCATGAAAACAGAAGGCACC 59.385 47.619 0.00 0.00 0.00 5.01
239 241 2.666619 CGAGCATGAAAACAGAAGGCAC 60.667 50.000 0.00 0.00 0.00 5.01
241 243 1.135575 CCGAGCATGAAAACAGAAGGC 60.136 52.381 0.00 0.00 0.00 4.35
245 247 1.806542 GAAGCCGAGCATGAAAACAGA 59.193 47.619 0.00 0.00 0.00 3.41
246 248 1.464687 CGAAGCCGAGCATGAAAACAG 60.465 52.381 0.00 0.00 38.22 3.16
254 257 2.436646 CAACCCGAAGCCGAGCAT 60.437 61.111 0.00 0.00 38.22 3.79
317 320 1.298602 CCCAACAAGCAAGCCAAAAC 58.701 50.000 0.00 0.00 0.00 2.43
339 342 6.291849 CCGATACAAGATGACGATGAAGAAAC 60.292 42.308 0.00 0.00 0.00 2.78
345 348 4.607955 GAACCGATACAAGATGACGATGA 58.392 43.478 0.00 0.00 0.00 2.92
348 351 2.223409 CCGAACCGATACAAGATGACGA 60.223 50.000 0.00 0.00 0.00 4.20
350 353 1.859080 GCCGAACCGATACAAGATGAC 59.141 52.381 0.00 0.00 0.00 3.06
355 543 1.659098 GAACTGCCGAACCGATACAAG 59.341 52.381 0.00 0.00 0.00 3.16
377 565 7.233389 TGCCCAACTTTATGTATAAAAAGCA 57.767 32.000 0.00 0.00 36.39 3.91
383 571 5.706369 ACACGTTGCCCAACTTTATGTATAA 59.294 36.000 9.23 0.00 39.08 0.98
388 576 4.472286 CTTACACGTTGCCCAACTTTATG 58.528 43.478 9.23 5.25 39.08 1.90
389 577 3.504520 CCTTACACGTTGCCCAACTTTAT 59.495 43.478 9.23 0.00 39.08 1.40
395 583 0.107116 ACACCTTACACGTTGCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
430 640 6.098838 AGCTAAGAGAATCATGTGTGTCCATA 59.901 38.462 0.00 0.00 37.82 2.74
431 641 5.104610 AGCTAAGAGAATCATGTGTGTCCAT 60.105 40.000 0.00 0.00 37.82 3.41
480 690 4.759693 ACATTGTTTTCTGCGTCTTGGATA 59.240 37.500 0.00 0.00 0.00 2.59
521 762 8.242739 ACATGATGATGATGTACTTAGATCTCG 58.757 37.037 0.00 0.00 32.12 4.04
529 770 6.709397 GGATGTGACATGATGATGATGTACTT 59.291 38.462 1.23 0.00 34.10 2.24
531 772 6.228995 AGGATGTGACATGATGATGATGTAC 58.771 40.000 1.23 0.00 34.10 2.90
532 773 6.429521 AGGATGTGACATGATGATGATGTA 57.570 37.500 1.23 0.00 34.10 2.29
533 774 5.306114 AGGATGTGACATGATGATGATGT 57.694 39.130 1.23 0.00 36.73 3.06
534 775 4.695928 GGAGGATGTGACATGATGATGATG 59.304 45.833 1.23 0.00 33.36 3.07
535 776 4.349930 TGGAGGATGTGACATGATGATGAT 59.650 41.667 1.23 0.00 33.36 2.45
536 777 3.712733 TGGAGGATGTGACATGATGATGA 59.287 43.478 1.23 0.00 33.36 2.92
537 778 3.813724 GTGGAGGATGTGACATGATGATG 59.186 47.826 1.23 0.00 35.49 3.07
538 779 3.457012 TGTGGAGGATGTGACATGATGAT 59.543 43.478 1.23 0.00 0.00 2.45
539 780 2.839425 TGTGGAGGATGTGACATGATGA 59.161 45.455 1.23 0.00 0.00 2.92
540 781 3.271055 TGTGGAGGATGTGACATGATG 57.729 47.619 1.23 0.00 0.00 3.07
541 782 3.493873 CGATGTGGAGGATGTGACATGAT 60.494 47.826 1.23 0.00 0.00 2.45
542 783 2.159057 CGATGTGGAGGATGTGACATGA 60.159 50.000 1.23 0.00 0.00 3.07
543 784 2.159057 TCGATGTGGAGGATGTGACATG 60.159 50.000 1.23 0.00 0.00 3.21
544 785 2.110578 TCGATGTGGAGGATGTGACAT 58.889 47.619 0.00 0.00 0.00 3.06
545 786 1.204704 GTCGATGTGGAGGATGTGACA 59.795 52.381 0.00 0.00 0.00 3.58
546 787 1.799181 CGTCGATGTGGAGGATGTGAC 60.799 57.143 0.00 0.00 0.00 3.67
547 788 0.455815 CGTCGATGTGGAGGATGTGA 59.544 55.000 0.00 0.00 0.00 3.58
548 789 0.528466 CCGTCGATGTGGAGGATGTG 60.528 60.000 3.52 0.00 0.00 3.21
549 790 1.816537 CCGTCGATGTGGAGGATGT 59.183 57.895 3.52 0.00 0.00 3.06
550 791 1.592669 GCCGTCGATGTGGAGGATG 60.593 63.158 3.52 0.00 0.00 3.51
551 792 2.815308 GCCGTCGATGTGGAGGAT 59.185 61.111 3.52 0.00 0.00 3.24
552 793 3.822192 CGCCGTCGATGTGGAGGA 61.822 66.667 3.52 0.00 38.10 3.71
553 794 3.642778 AACGCCGTCGATGTGGAGG 62.643 63.158 3.52 0.00 39.41 4.30
554 795 2.126071 AACGCCGTCGATGTGGAG 60.126 61.111 3.52 3.82 39.41 3.86
555 796 2.220615 ATCAACGCCGTCGATGTGGA 62.221 55.000 3.52 0.00 39.18 4.02
556 797 1.358725 AATCAACGCCGTCGATGTGG 61.359 55.000 3.52 0.22 39.18 4.17
557 798 0.025001 GAATCAACGCCGTCGATGTG 59.975 55.000 3.52 0.32 39.18 3.21
558 799 1.410737 CGAATCAACGCCGTCGATGT 61.411 55.000 3.52 0.00 39.18 3.06
613 854 0.826256 GGGAAAGGGTCAAGCGGTTT 60.826 55.000 0.00 0.00 0.00 3.27
614 855 1.228459 GGGAAAGGGTCAAGCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
709 955 1.490490 TCTGGACTGGACTGCTTTTGT 59.510 47.619 0.00 0.00 0.00 2.83
710 956 2.149578 CTCTGGACTGGACTGCTTTTG 58.850 52.381 0.00 0.00 0.00 2.44
745 1005 4.115199 AGGGGATGGCTTGCCGTC 62.115 66.667 21.93 21.93 36.48 4.79
757 1017 3.068691 CGACTTGAGGCGAGGGGA 61.069 66.667 0.00 0.00 0.00 4.81
796 1073 0.326618 AGGGAGTCGGATGGTTGGAT 60.327 55.000 0.00 0.00 0.00 3.41
837 1114 1.314867 GTGGGGAGAGGGGAGATCA 59.685 63.158 0.00 0.00 0.00 2.92
963 1677 3.598264 CAGGGGGTTATAGAGATGGGAA 58.402 50.000 0.00 0.00 0.00 3.97
964 1678 2.763515 GCAGGGGGTTATAGAGATGGGA 60.764 54.545 0.00 0.00 0.00 4.37
965 1679 1.630878 GCAGGGGGTTATAGAGATGGG 59.369 57.143 0.00 0.00 0.00 4.00
966 1680 1.630878 GGCAGGGGGTTATAGAGATGG 59.369 57.143 0.00 0.00 0.00 3.51
967 1681 1.276421 CGGCAGGGGGTTATAGAGATG 59.724 57.143 0.00 0.00 0.00 2.90
968 1682 1.645710 CGGCAGGGGGTTATAGAGAT 58.354 55.000 0.00 0.00 0.00 2.75
1165 1885 3.994392 GACTTGTCCTTGAATTCGTAGCA 59.006 43.478 0.04 0.00 0.00 3.49
1173 1893 2.040412 GACCAGGGACTTGTCCTTGAAT 59.960 50.000 26.68 17.04 44.23 2.57
1500 2231 1.404315 GCACGGGAAAGGTAGACTCTG 60.404 57.143 0.00 0.00 0.00 3.35
1501 2232 0.896226 GCACGGGAAAGGTAGACTCT 59.104 55.000 0.00 0.00 0.00 3.24
1503 2234 1.183676 ACGCACGGGAAAGGTAGACT 61.184 55.000 0.00 0.00 0.00 3.24
1505 2236 1.290955 CACGCACGGGAAAGGTAGA 59.709 57.895 0.00 0.00 0.00 2.59
1701 4668 6.521151 TTGGTTTACTTTCACCCGTAAAAA 57.479 33.333 0.00 0.00 37.35 1.94
1706 4673 2.689471 GGTTTGGTTTACTTTCACCCGT 59.311 45.455 0.00 0.00 31.24 5.28
1707 4674 2.953648 AGGTTTGGTTTACTTTCACCCG 59.046 45.455 0.00 0.00 31.24 5.28
1708 4675 3.955551 TCAGGTTTGGTTTACTTTCACCC 59.044 43.478 0.00 0.00 31.24 4.61
1710 4677 5.535030 AGGATCAGGTTTGGTTTACTTTCAC 59.465 40.000 0.00 0.00 0.00 3.18
1711 4678 5.701224 AGGATCAGGTTTGGTTTACTTTCA 58.299 37.500 0.00 0.00 0.00 2.69
1712 4679 6.650427 AAGGATCAGGTTTGGTTTACTTTC 57.350 37.500 0.00 0.00 0.00 2.62
1768 4738 3.374058 CCGTACAGGCGATTGATCTTTTT 59.626 43.478 0.00 0.00 0.00 1.94
1769 4739 2.936498 CCGTACAGGCGATTGATCTTTT 59.064 45.455 0.00 0.00 0.00 2.27
1770 4740 2.550978 CCGTACAGGCGATTGATCTTT 58.449 47.619 0.00 0.00 0.00 2.52
1771 4741 1.202533 CCCGTACAGGCGATTGATCTT 60.203 52.381 0.00 0.00 39.21 2.40
1772 4742 0.389391 CCCGTACAGGCGATTGATCT 59.611 55.000 0.00 0.00 39.21 2.75
1773 4743 0.600255 CCCCGTACAGGCGATTGATC 60.600 60.000 0.00 0.00 39.21 2.92
1774 4744 1.445942 CCCCGTACAGGCGATTGAT 59.554 57.895 0.00 0.00 39.21 2.57
1775 4745 2.897207 CCCCGTACAGGCGATTGA 59.103 61.111 0.00 0.00 39.21 2.57
1776 4746 2.895372 GCCCCGTACAGGCGATTG 60.895 66.667 8.08 0.00 41.41 2.67
1782 4752 0.683504 AGTCTACTGCCCCGTACAGG 60.684 60.000 0.00 0.00 39.55 4.00
2016 4987 6.877322 GGTGCTTTGACAAGATACTAAGGTAA 59.123 38.462 0.00 0.00 30.57 2.85
2249 5226 3.805422 ACGAACAAAACGACAAGATAGCA 59.195 39.130 0.00 0.00 34.70 3.49
2269 5352 9.337091 CTAAGAACCAACAACCATTTTATTACG 57.663 33.333 0.00 0.00 0.00 3.18
2394 5477 9.615295 TTAACCGACATAAGCAAAAACTATTTC 57.385 29.630 0.00 0.00 0.00 2.17
2417 5500 6.864165 GCGGGAAACATAAACAACTTGATTAA 59.136 34.615 0.00 0.00 0.00 1.40
2528 5611 7.096065 GCATAAGAAAGGCTACAACAACAAAAG 60.096 37.037 0.00 0.00 0.00 2.27
2585 5674 7.959651 CCTTTTCATTGTTCTTCTCTTCATACG 59.040 37.037 0.00 0.00 0.00 3.06
2587 5676 8.924511 ACCTTTTCATTGTTCTTCTCTTCATA 57.075 30.769 0.00 0.00 0.00 2.15
2945 6035 6.313519 TGACTCAAGGCTAATAAGTGGATT 57.686 37.500 0.00 0.00 0.00 3.01
2966 6056 4.444876 GCTTACTGGATGCTTCCCTAATGA 60.445 45.833 15.62 0.00 41.83 2.57
2983 6073 5.593010 CCAAACTCTAATAGCTCGCTTACT 58.407 41.667 0.00 0.00 0.00 2.24
3121 6211 1.927895 CGCGGTTTGAAGCTATCTCT 58.072 50.000 0.00 0.00 0.00 3.10
3217 6313 1.419922 CAATTCGTCCAACGGCTCG 59.580 57.895 0.00 0.00 42.81 5.03
3282 6386 1.596709 GCAAAAACATTTGTTGCGCCC 60.597 47.619 4.18 0.00 38.39 6.13
3304 6408 8.482128 TGGAAAAATTCAATGGAACTACAAACT 58.518 29.630 0.00 0.00 35.46 2.66
3412 6518 1.534595 GAACTTGCACCTTGCTCTCAG 59.465 52.381 0.00 0.00 45.31 3.35
3489 6602 3.260884 TGTAGGTGAACCATCCAGTTCTC 59.739 47.826 1.62 2.59 45.25 2.87
3549 6662 0.108585 TCTCGAAGGGCAAAAGCAGT 59.891 50.000 0.00 0.00 0.00 4.40
3566 6679 1.765314 CGATTGATTCCCCTCCACTCT 59.235 52.381 0.00 0.00 0.00 3.24
3572 6685 2.484889 GCTGTACGATTGATTCCCCTC 58.515 52.381 0.00 0.00 0.00 4.30
3720 6834 3.970410 CCCAAGTCAGCCCCAGCA 61.970 66.667 0.00 0.00 43.56 4.41
3800 6914 2.158798 AGGAGACCGTCATCTCGATACA 60.159 50.000 0.40 0.00 45.27 2.29
3994 7108 4.135153 CGTCTGCTCTCCCACCGG 62.135 72.222 0.00 0.00 0.00 5.28
4015 7129 2.883267 GAAGAGCTCCGGCCAGCATT 62.883 60.000 16.78 10.77 42.40 3.56
4208 7328 1.785041 AAGATGCCACACGTGTGCAC 61.785 55.000 37.33 30.45 44.34 4.57
4209 7329 1.525765 AAGATGCCACACGTGTGCA 60.526 52.632 37.33 34.57 44.34 4.57
4210 7330 1.081906 CAAGATGCCACACGTGTGC 60.082 57.895 37.33 31.00 44.34 4.57
4211 7331 1.081906 GCAAGATGCCACACGTGTG 60.082 57.895 36.13 36.13 45.23 3.82
4212 7332 1.525765 TGCAAGATGCCACACGTGT 60.526 52.632 17.22 17.22 44.23 4.49
4213 7333 1.081906 GTGCAAGATGCCACACGTG 60.082 57.895 15.48 15.48 44.23 4.49
4214 7334 0.890542 ATGTGCAAGATGCCACACGT 60.891 50.000 8.87 0.00 44.23 4.49
4215 7335 0.179181 GATGTGCAAGATGCCACACG 60.179 55.000 8.87 0.00 44.23 4.49
4216 7336 0.179181 CGATGTGCAAGATGCCACAC 60.179 55.000 8.87 0.00 44.23 3.82
4217 7337 0.606130 ACGATGTGCAAGATGCCACA 60.606 50.000 0.00 5.20 44.23 4.17
4218 7338 0.097674 GACGATGTGCAAGATGCCAC 59.902 55.000 0.00 0.00 44.23 5.01
4219 7339 1.026182 GGACGATGTGCAAGATGCCA 61.026 55.000 0.00 0.00 44.23 4.92
4220 7340 1.026182 TGGACGATGTGCAAGATGCC 61.026 55.000 0.00 0.00 44.23 4.40
4221 7341 0.097674 GTGGACGATGTGCAAGATGC 59.902 55.000 0.00 0.00 45.29 3.91
4222 7342 0.371301 CGTGGACGATGTGCAAGATG 59.629 55.000 0.00 0.00 43.02 2.90
4223 7343 1.361668 GCGTGGACGATGTGCAAGAT 61.362 55.000 8.38 0.00 43.02 2.40
4224 7344 2.027073 GCGTGGACGATGTGCAAGA 61.027 57.895 8.38 0.00 43.02 3.02
4225 7345 2.476051 GCGTGGACGATGTGCAAG 59.524 61.111 2.73 0.47 43.02 4.01
4226 7346 3.410516 CGCGTGGACGATGTGCAA 61.411 61.111 2.73 0.00 43.02 4.08
4227 7347 4.656117 ACGCGTGGACGATGTGCA 62.656 61.111 12.93 0.00 43.02 4.57
4228 7348 3.838795 GACGCGTGGACGATGTGC 61.839 66.667 20.70 0.00 43.02 4.57
4229 7349 1.282248 AAAGACGCGTGGACGATGTG 61.282 55.000 20.70 0.00 43.02 3.21
4230 7350 0.241749 TAAAGACGCGTGGACGATGT 59.758 50.000 20.70 0.09 43.02 3.06
4231 7351 1.556564 ATAAAGACGCGTGGACGATG 58.443 50.000 20.70 0.00 43.02 3.84
4232 7352 2.288961 AATAAAGACGCGTGGACGAT 57.711 45.000 20.70 0.00 43.02 3.73
4233 7353 2.917701 TAATAAAGACGCGTGGACGA 57.082 45.000 20.70 0.00 43.02 4.20
4234 7354 3.061403 GTGATAATAAAGACGCGTGGACG 60.061 47.826 20.70 0.00 43.27 4.79
4235 7355 4.110482 AGTGATAATAAAGACGCGTGGAC 58.890 43.478 20.70 1.12 0.00 4.02
4236 7356 4.142337 TGAGTGATAATAAAGACGCGTGGA 60.142 41.667 20.70 0.00 0.00 4.02
4237 7357 4.109766 TGAGTGATAATAAAGACGCGTGG 58.890 43.478 20.70 0.00 0.00 4.94
4238 7358 5.890110 ATGAGTGATAATAAAGACGCGTG 57.110 39.130 20.70 0.00 0.00 5.34
4239 7359 6.903883 AAATGAGTGATAATAAAGACGCGT 57.096 33.333 13.85 13.85 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.