Multiple sequence alignment - TraesCS7D01G343000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G343000 chr7D 100.000 2552 0 0 1 2552 439708438 439705887 0.000000e+00 4713
1 TraesCS7D01G343000 chr7D 92.526 1726 82 14 592 2314 63995390 63997071 0.000000e+00 2429
2 TraesCS7D01G343000 chr7D 89.552 268 26 2 1 266 557947636 557947369 3.150000e-89 339
3 TraesCS7D01G343000 chr7D 89.179 268 29 0 1 268 636811502 636811769 4.070000e-88 335
4 TraesCS7D01G343000 chr7D 88.390 267 30 1 1 266 178695685 178695951 1.140000e-83 320
5 TraesCS7D01G343000 chr4D 94.504 1965 72 11 591 2547 50776933 50778869 0.000000e+00 2998
6 TraesCS7D01G343000 chr4D 93.545 1735 80 18 586 2314 459886449 459884741 0.000000e+00 2555
7 TraesCS7D01G343000 chr3D 94.165 1971 74 18 589 2552 447973576 447971640 0.000000e+00 2964
8 TraesCS7D01G343000 chr6D 93.855 1969 99 11 592 2552 312544302 312542348 0.000000e+00 2946
9 TraesCS7D01G343000 chr6D 92.693 1998 97 15 584 2552 12108146 12106169 0.000000e+00 2835
10 TraesCS7D01G343000 chr6D 92.516 1991 82 17 592 2552 28981283 28979330 0.000000e+00 2789
11 TraesCS7D01G343000 chr6D 94.292 946 29 5 1607 2552 448518535 448519455 0.000000e+00 1424
12 TraesCS7D01G343000 chr6D 89.591 269 27 1 1 268 445803004 445802736 8.740000e-90 340
13 TraesCS7D01G343000 chr6D 88.848 269 27 2 1 266 65362489 65362757 6.810000e-86 327
14 TraesCS7D01G343000 chr5D 93.568 1990 79 15 592 2552 44511943 44513912 0.000000e+00 2920
15 TraesCS7D01G343000 chr5D 94.835 1394 51 8 584 1972 539819777 539818400 0.000000e+00 2156
16 TraesCS7D01G343000 chr3A 93.425 1962 105 16 590 2547 235187477 235189418 0.000000e+00 2887
17 TraesCS7D01G343000 chr3A 88.104 269 31 1 1 268 386445095 386444827 4.100000e-83 318
18 TraesCS7D01G343000 chr1A 93.208 1973 115 12 586 2552 556201757 556203716 0.000000e+00 2883
19 TraesCS7D01G343000 chr1D 92.908 1974 96 13 586 2552 464037587 464039523 0.000000e+00 2830
20 TraesCS7D01G343000 chr1D 92.504 2001 89 14 590 2552 25464317 25466294 0.000000e+00 2808
21 TraesCS7D01G343000 chr1D 93.382 1904 87 16 586 2471 347252970 347251088 0.000000e+00 2782
22 TraesCS7D01G343000 chr7A 92.470 1992 112 12 584 2552 30966337 30968313 0.000000e+00 2813
23 TraesCS7D01G343000 chr2A 90.387 1966 141 23 593 2551 742454755 742452831 0.000000e+00 2540
24 TraesCS7D01G343000 chr2A 88.104 269 31 1 1 268 719482494 719482226 4.100000e-83 318
25 TraesCS7D01G343000 chr3B 88.661 1755 143 31 590 2313 124399478 124397749 0.000000e+00 2087
26 TraesCS7D01G343000 chr2D 90.335 269 23 2 1 266 545782391 545782659 1.450000e-92 350
27 TraesCS7D01G343000 chr4A 88.722 266 30 0 1 266 429756471 429756206 2.450000e-85 326


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G343000 chr7D 439705887 439708438 2551 True 4713 4713 100.000 1 2552 1 chr7D.!!$R1 2551
1 TraesCS7D01G343000 chr7D 63995390 63997071 1681 False 2429 2429 92.526 592 2314 1 chr7D.!!$F1 1722
2 TraesCS7D01G343000 chr4D 50776933 50778869 1936 False 2998 2998 94.504 591 2547 1 chr4D.!!$F1 1956
3 TraesCS7D01G343000 chr4D 459884741 459886449 1708 True 2555 2555 93.545 586 2314 1 chr4D.!!$R1 1728
4 TraesCS7D01G343000 chr3D 447971640 447973576 1936 True 2964 2964 94.165 589 2552 1 chr3D.!!$R1 1963
5 TraesCS7D01G343000 chr6D 312542348 312544302 1954 True 2946 2946 93.855 592 2552 1 chr6D.!!$R3 1960
6 TraesCS7D01G343000 chr6D 12106169 12108146 1977 True 2835 2835 92.693 584 2552 1 chr6D.!!$R1 1968
7 TraesCS7D01G343000 chr6D 28979330 28981283 1953 True 2789 2789 92.516 592 2552 1 chr6D.!!$R2 1960
8 TraesCS7D01G343000 chr6D 448518535 448519455 920 False 1424 1424 94.292 1607 2552 1 chr6D.!!$F2 945
9 TraesCS7D01G343000 chr5D 44511943 44513912 1969 False 2920 2920 93.568 592 2552 1 chr5D.!!$F1 1960
10 TraesCS7D01G343000 chr5D 539818400 539819777 1377 True 2156 2156 94.835 584 1972 1 chr5D.!!$R1 1388
11 TraesCS7D01G343000 chr3A 235187477 235189418 1941 False 2887 2887 93.425 590 2547 1 chr3A.!!$F1 1957
12 TraesCS7D01G343000 chr1A 556201757 556203716 1959 False 2883 2883 93.208 586 2552 1 chr1A.!!$F1 1966
13 TraesCS7D01G343000 chr1D 464037587 464039523 1936 False 2830 2830 92.908 586 2552 1 chr1D.!!$F2 1966
14 TraesCS7D01G343000 chr1D 25464317 25466294 1977 False 2808 2808 92.504 590 2552 1 chr1D.!!$F1 1962
15 TraesCS7D01G343000 chr1D 347251088 347252970 1882 True 2782 2782 93.382 586 2471 1 chr1D.!!$R1 1885
16 TraesCS7D01G343000 chr7A 30966337 30968313 1976 False 2813 2813 92.470 584 2552 1 chr7A.!!$F1 1968
17 TraesCS7D01G343000 chr2A 742452831 742454755 1924 True 2540 2540 90.387 593 2551 1 chr2A.!!$R2 1958
18 TraesCS7D01G343000 chr3B 124397749 124399478 1729 True 2087 2087 88.661 590 2313 1 chr3B.!!$R1 1723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.237235 GGCGCGACTGTGAAATGAAA 59.763 50.0 12.1 0.0 0.0 2.69 F
98 99 0.240945 CCGCCGAATTTGAAGCAGTT 59.759 50.0 0.0 0.0 0.0 3.16 F
479 480 0.393673 TATCGGGTGTGGTGCAATGG 60.394 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 1311 0.179062 GTCTTGGCCAGAGCATCGAT 60.179 55.000 5.11 0.0 42.67 3.59 R
1303 1353 2.629137 TGCACAACCATTCTTCATGCTT 59.371 40.909 0.00 0.0 32.81 3.91 R
2197 2295 0.680921 CATGCGGTCCTGGGTTCAAT 60.681 55.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.329545 TCCGGCCAGCTGGTGTTC 62.330 66.667 32.81 16.61 42.88 3.18
18 19 4.641645 CCGGCCAGCTGGTGTTCA 62.642 66.667 32.81 0.00 37.68 3.18
19 20 3.052082 CGGCCAGCTGGTGTTCAG 61.052 66.667 32.81 13.74 46.03 3.02
20 21 2.674380 GGCCAGCTGGTGTTCAGG 60.674 66.667 32.81 6.34 43.54 3.86
21 22 3.368571 GCCAGCTGGTGTTCAGGC 61.369 66.667 32.81 13.23 43.54 4.85
22 23 3.052082 CCAGCTGGTGTTCAGGCG 61.052 66.667 25.53 0.00 43.54 5.52
23 24 3.052082 CAGCTGGTGTTCAGGCGG 61.052 66.667 5.57 0.00 43.54 6.13
24 25 4.335647 AGCTGGTGTTCAGGCGGG 62.336 66.667 0.00 0.00 43.54 6.13
29 30 3.723348 GTGTTCAGGCGGGCGAAC 61.723 66.667 22.40 22.40 41.53 3.95
44 45 4.595538 AACGGGCGCGACTGTGAA 62.596 61.111 30.40 0.00 0.00 3.18
45 46 4.595538 ACGGGCGCGACTGTGAAA 62.596 61.111 29.07 0.00 0.00 2.69
46 47 3.118454 CGGGCGCGACTGTGAAAT 61.118 61.111 19.65 0.00 0.00 2.17
47 48 2.480555 GGGCGCGACTGTGAAATG 59.519 61.111 13.91 0.00 0.00 2.32
48 49 2.032634 GGGCGCGACTGTGAAATGA 61.033 57.895 13.91 0.00 0.00 2.57
49 50 1.573829 GGGCGCGACTGTGAAATGAA 61.574 55.000 13.91 0.00 0.00 2.57
50 51 0.237235 GGCGCGACTGTGAAATGAAA 59.763 50.000 12.10 0.00 0.00 2.69
51 52 1.135689 GGCGCGACTGTGAAATGAAAT 60.136 47.619 12.10 0.00 0.00 2.17
52 53 1.906966 GCGCGACTGTGAAATGAAATG 59.093 47.619 12.10 0.00 0.00 2.32
53 54 2.412716 GCGCGACTGTGAAATGAAATGA 60.413 45.455 12.10 0.00 0.00 2.57
54 55 3.809234 CGCGACTGTGAAATGAAATGAA 58.191 40.909 0.00 0.00 0.00 2.57
55 56 3.842428 CGCGACTGTGAAATGAAATGAAG 59.158 43.478 0.00 0.00 0.00 3.02
56 57 4.161333 GCGACTGTGAAATGAAATGAAGG 58.839 43.478 0.00 0.00 0.00 3.46
57 58 4.726416 CGACTGTGAAATGAAATGAAGGG 58.274 43.478 0.00 0.00 0.00 3.95
58 59 4.488879 GACTGTGAAATGAAATGAAGGGC 58.511 43.478 0.00 0.00 0.00 5.19
59 60 3.057315 ACTGTGAAATGAAATGAAGGGCG 60.057 43.478 0.00 0.00 0.00 6.13
60 61 2.230992 TGTGAAATGAAATGAAGGGCGG 59.769 45.455 0.00 0.00 0.00 6.13
61 62 2.231235 GTGAAATGAAATGAAGGGCGGT 59.769 45.455 0.00 0.00 0.00 5.68
62 63 2.896685 TGAAATGAAATGAAGGGCGGTT 59.103 40.909 0.00 0.00 0.00 4.44
63 64 3.253230 GAAATGAAATGAAGGGCGGTTG 58.747 45.455 0.00 0.00 0.00 3.77
64 65 1.185315 ATGAAATGAAGGGCGGTTGG 58.815 50.000 0.00 0.00 0.00 3.77
65 66 0.897863 TGAAATGAAGGGCGGTTGGG 60.898 55.000 0.00 0.00 0.00 4.12
66 67 2.225791 GAAATGAAGGGCGGTTGGGC 62.226 60.000 0.00 0.00 41.35 5.36
94 95 2.202610 GGCCGCCGAATTTGAAGC 60.203 61.111 0.00 0.00 0.00 3.86
95 96 2.566010 GCCGCCGAATTTGAAGCA 59.434 55.556 0.00 0.00 0.00 3.91
96 97 1.514873 GCCGCCGAATTTGAAGCAG 60.515 57.895 0.00 0.00 0.00 4.24
97 98 1.875963 CCGCCGAATTTGAAGCAGT 59.124 52.632 0.00 0.00 0.00 4.40
98 99 0.240945 CCGCCGAATTTGAAGCAGTT 59.759 50.000 0.00 0.00 0.00 3.16
99 100 1.330306 CGCCGAATTTGAAGCAGTTG 58.670 50.000 0.00 0.00 0.00 3.16
100 101 1.063031 GCCGAATTTGAAGCAGTTGC 58.937 50.000 0.00 0.00 42.49 4.17
101 102 1.602668 GCCGAATTTGAAGCAGTTGCA 60.603 47.619 6.90 0.00 45.16 4.08
102 103 2.927871 GCCGAATTTGAAGCAGTTGCAT 60.928 45.455 6.90 0.00 45.16 3.96
103 104 2.919229 CCGAATTTGAAGCAGTTGCATC 59.081 45.455 6.90 4.63 45.16 3.91
104 105 3.366679 CCGAATTTGAAGCAGTTGCATCT 60.367 43.478 10.25 0.00 45.16 2.90
105 106 3.850273 CGAATTTGAAGCAGTTGCATCTC 59.150 43.478 10.25 3.18 45.16 2.75
106 107 2.975410 TTTGAAGCAGTTGCATCTCG 57.025 45.000 10.25 0.00 45.16 4.04
107 108 1.882912 TTGAAGCAGTTGCATCTCGT 58.117 45.000 10.25 0.00 45.16 4.18
108 109 1.150827 TGAAGCAGTTGCATCTCGTG 58.849 50.000 10.25 0.00 45.16 4.35
109 110 1.270252 TGAAGCAGTTGCATCTCGTGA 60.270 47.619 10.25 0.00 45.16 4.35
110 111 2.005451 GAAGCAGTTGCATCTCGTGAT 58.995 47.619 6.90 0.00 45.16 3.06
120 121 5.094812 TTGCATCTCGTGATGTAAATTTGC 58.905 37.500 22.90 11.98 46.80 3.68
121 122 5.335504 TTGCATCTCGTGATGTAAATTTGCA 60.336 36.000 22.90 11.51 46.80 4.08
122 123 6.625520 TTGCATCTCGTGATGTAAATTTGCAT 60.626 34.615 22.90 20.00 46.80 3.96
123 124 6.964677 CATCTCGTGATGTAAATTTGCATC 57.035 37.500 30.97 30.97 46.34 3.91
142 143 9.766277 TTTGCATCACAAAGTTTTCAATTTTAC 57.234 25.926 0.00 0.00 43.35 2.01
143 144 8.484641 TGCATCACAAAGTTTTCAATTTTACA 57.515 26.923 0.00 0.00 0.00 2.41
144 145 9.107177 TGCATCACAAAGTTTTCAATTTTACAT 57.893 25.926 0.00 0.00 0.00 2.29
145 146 9.584839 GCATCACAAAGTTTTCAATTTTACATC 57.415 29.630 0.00 0.00 0.00 3.06
148 149 9.092876 TCACAAAGTTTTCAATTTTACATCACC 57.907 29.630 0.00 0.00 0.00 4.02
149 150 8.055402 CACAAAGTTTTCAATTTTACATCACCG 58.945 33.333 0.00 0.00 0.00 4.94
150 151 7.762159 ACAAAGTTTTCAATTTTACATCACCGT 59.238 29.630 0.00 0.00 0.00 4.83
151 152 7.692908 AAGTTTTCAATTTTACATCACCGTG 57.307 32.000 0.00 0.00 0.00 4.94
152 153 7.033530 AGTTTTCAATTTTACATCACCGTGA 57.966 32.000 3.10 3.10 0.00 4.35
153 154 7.138736 AGTTTTCAATTTTACATCACCGTGAG 58.861 34.615 7.41 2.35 0.00 3.51
166 167 4.778143 GTGAGGCCGCGGTCCAAT 62.778 66.667 31.19 15.04 0.00 3.16
167 168 4.028490 TGAGGCCGCGGTCCAATT 62.028 61.111 31.19 14.67 0.00 2.32
168 169 2.750237 GAGGCCGCGGTCCAATTT 60.750 61.111 31.19 14.29 0.00 1.82
169 170 2.282887 AGGCCGCGGTCCAATTTT 60.283 55.556 31.19 10.99 0.00 1.82
170 171 1.873270 GAGGCCGCGGTCCAATTTTT 61.873 55.000 31.19 12.83 0.00 1.94
200 201 4.291047 CATCTGTTGGAGCAGCGT 57.709 55.556 0.00 0.00 36.49 5.07
201 202 2.548178 CATCTGTTGGAGCAGCGTT 58.452 52.632 0.00 0.00 36.49 4.84
202 203 0.877071 CATCTGTTGGAGCAGCGTTT 59.123 50.000 0.00 0.00 36.49 3.60
203 204 1.267806 CATCTGTTGGAGCAGCGTTTT 59.732 47.619 0.00 0.00 36.49 2.43
204 205 1.388547 TCTGTTGGAGCAGCGTTTTT 58.611 45.000 0.00 0.00 36.49 1.94
220 221 2.953284 TTTTTGTCCCATACGGTCCA 57.047 45.000 0.00 0.00 0.00 4.02
221 222 2.953284 TTTTGTCCCATACGGTCCAA 57.047 45.000 0.00 0.00 0.00 3.53
222 223 2.953284 TTTGTCCCATACGGTCCAAA 57.047 45.000 0.00 0.00 33.81 3.28
223 224 2.953284 TTGTCCCATACGGTCCAAAA 57.047 45.000 0.00 0.00 0.00 2.44
224 225 2.483014 TGTCCCATACGGTCCAAAAG 57.517 50.000 0.00 0.00 0.00 2.27
225 226 1.700739 TGTCCCATACGGTCCAAAAGT 59.299 47.619 0.00 0.00 0.00 2.66
226 227 2.106857 TGTCCCATACGGTCCAAAAGTT 59.893 45.455 0.00 0.00 0.00 2.66
227 228 3.327172 TGTCCCATACGGTCCAAAAGTTA 59.673 43.478 0.00 0.00 0.00 2.24
228 229 3.937079 GTCCCATACGGTCCAAAAGTTAG 59.063 47.826 0.00 0.00 0.00 2.34
229 230 3.054948 TCCCATACGGTCCAAAAGTTAGG 60.055 47.826 0.00 0.00 0.00 2.69
230 231 3.307904 CCCATACGGTCCAAAAGTTAGGT 60.308 47.826 0.00 0.00 0.00 3.08
231 232 4.080975 CCCATACGGTCCAAAAGTTAGGTA 60.081 45.833 0.00 0.00 0.00 3.08
232 233 5.397109 CCCATACGGTCCAAAAGTTAGGTAT 60.397 44.000 0.00 0.00 0.00 2.73
233 234 6.117488 CCATACGGTCCAAAAGTTAGGTATT 58.883 40.000 0.00 0.00 0.00 1.89
234 235 6.600427 CCATACGGTCCAAAAGTTAGGTATTT 59.400 38.462 0.00 0.00 0.00 1.40
235 236 7.121611 CCATACGGTCCAAAAGTTAGGTATTTT 59.878 37.037 0.00 0.00 0.00 1.82
236 237 6.964807 ACGGTCCAAAAGTTAGGTATTTTT 57.035 33.333 0.00 0.00 0.00 1.94
237 238 9.737844 ATACGGTCCAAAAGTTAGGTATTTTTA 57.262 29.630 0.00 0.00 0.00 1.52
238 239 7.874940 ACGGTCCAAAAGTTAGGTATTTTTAC 58.125 34.615 0.00 0.00 0.00 2.01
239 240 7.501892 ACGGTCCAAAAGTTAGGTATTTTTACA 59.498 33.333 0.00 0.00 0.00 2.41
240 241 8.517056 CGGTCCAAAAGTTAGGTATTTTTACAT 58.483 33.333 0.00 0.00 0.00 2.29
248 249 8.047413 AGTTAGGTATTTTTACATTTGGACCG 57.953 34.615 0.00 0.00 0.00 4.79
249 250 7.666804 AGTTAGGTATTTTTACATTTGGACCGT 59.333 33.333 0.00 0.00 0.00 4.83
250 251 6.505044 AGGTATTTTTACATTTGGACCGTC 57.495 37.500 0.00 0.00 0.00 4.79
251 252 6.243148 AGGTATTTTTACATTTGGACCGTCT 58.757 36.000 0.00 0.00 0.00 4.18
252 253 7.396418 AGGTATTTTTACATTTGGACCGTCTA 58.604 34.615 0.00 0.00 0.00 2.59
253 254 8.050930 AGGTATTTTTACATTTGGACCGTCTAT 58.949 33.333 0.00 0.00 0.00 1.98
254 255 8.680001 GGTATTTTTACATTTGGACCGTCTATT 58.320 33.333 0.00 0.00 0.00 1.73
255 256 9.498307 GTATTTTTACATTTGGACCGTCTATTG 57.502 33.333 0.00 0.00 0.00 1.90
256 257 6.503589 TTTTACATTTGGACCGTCTATTGG 57.496 37.500 0.00 0.00 0.00 3.16
257 258 3.992943 ACATTTGGACCGTCTATTGGA 57.007 42.857 0.00 0.00 0.00 3.53
258 259 3.873910 ACATTTGGACCGTCTATTGGAG 58.126 45.455 0.00 0.00 0.00 3.86
259 260 3.517901 ACATTTGGACCGTCTATTGGAGA 59.482 43.478 0.00 0.00 0.00 3.71
260 261 4.164221 ACATTTGGACCGTCTATTGGAGAT 59.836 41.667 0.00 0.00 36.29 2.75
261 262 3.819564 TTGGACCGTCTATTGGAGATG 57.180 47.619 0.00 0.00 40.46 2.90
262 263 1.412710 TGGACCGTCTATTGGAGATGC 59.587 52.381 0.00 0.00 39.57 3.91
263 264 1.689273 GGACCGTCTATTGGAGATGCT 59.311 52.381 0.00 0.00 39.57 3.79
264 265 2.288518 GGACCGTCTATTGGAGATGCTC 60.289 54.545 0.00 0.00 39.57 4.26
265 266 2.625790 GACCGTCTATTGGAGATGCTCT 59.374 50.000 0.00 0.00 39.57 4.09
266 267 3.821600 GACCGTCTATTGGAGATGCTCTA 59.178 47.826 0.00 0.00 39.57 2.43
267 268 4.215908 ACCGTCTATTGGAGATGCTCTAA 58.784 43.478 0.00 0.00 39.57 2.10
268 269 4.649674 ACCGTCTATTGGAGATGCTCTAAA 59.350 41.667 0.00 0.00 39.57 1.85
269 270 5.221342 ACCGTCTATTGGAGATGCTCTAAAG 60.221 44.000 0.00 0.00 39.57 1.85
270 271 5.221342 CCGTCTATTGGAGATGCTCTAAAGT 60.221 44.000 0.00 0.00 39.57 2.66
271 272 6.016192 CCGTCTATTGGAGATGCTCTAAAGTA 60.016 42.308 0.00 0.00 39.57 2.24
272 273 7.081349 CGTCTATTGGAGATGCTCTAAAGTAG 58.919 42.308 0.00 0.00 34.82 2.57
273 274 7.041030 CGTCTATTGGAGATGCTCTAAAGTAGA 60.041 40.741 0.00 0.00 34.82 2.59
274 275 8.634444 GTCTATTGGAGATGCTCTAAAGTAGAA 58.366 37.037 0.00 0.00 34.82 2.10
275 276 9.201989 TCTATTGGAGATGCTCTAAAGTAGAAA 57.798 33.333 0.00 0.00 34.82 2.52
276 277 9.823647 CTATTGGAGATGCTCTAAAGTAGAAAA 57.176 33.333 0.00 0.00 34.82 2.29
278 279 9.692325 ATTGGAGATGCTCTAAAGTAGAAAAAT 57.308 29.630 0.00 0.00 34.82 1.82
313 314 6.917477 TGTGAAACATGTGTTTTGATCTTAGC 59.083 34.615 11.96 0.00 45.67 3.09
314 315 7.201812 TGTGAAACATGTGTTTTGATCTTAGCT 60.202 33.333 11.96 0.00 45.67 3.32
317 318 6.882610 ACATGTGTTTTGATCTTAGCTTCA 57.117 33.333 0.00 0.00 0.00 3.02
318 319 7.275888 ACATGTGTTTTGATCTTAGCTTCAA 57.724 32.000 0.00 0.00 0.00 2.69
319 320 7.141363 ACATGTGTTTTGATCTTAGCTTCAAC 58.859 34.615 0.00 0.00 31.87 3.18
320 321 5.747565 TGTGTTTTGATCTTAGCTTCAACG 58.252 37.500 0.00 0.00 31.87 4.10
321 322 5.525745 TGTGTTTTGATCTTAGCTTCAACGA 59.474 36.000 0.00 0.00 31.87 3.85
322 323 6.037720 TGTGTTTTGATCTTAGCTTCAACGAA 59.962 34.615 0.00 0.00 31.87 3.85
323 324 7.078228 GTGTTTTGATCTTAGCTTCAACGAAT 58.922 34.615 0.00 0.00 31.87 3.34
324 325 8.227791 GTGTTTTGATCTTAGCTTCAACGAATA 58.772 33.333 0.00 0.00 31.87 1.75
325 326 8.946085 TGTTTTGATCTTAGCTTCAACGAATAT 58.054 29.630 0.00 0.00 31.87 1.28
326 327 9.774742 GTTTTGATCTTAGCTTCAACGAATATT 57.225 29.630 0.00 0.00 31.87 1.28
327 328 9.988350 TTTTGATCTTAGCTTCAACGAATATTC 57.012 29.630 5.30 5.30 31.87 1.75
328 329 8.948631 TTGATCTTAGCTTCAACGAATATTCT 57.051 30.769 13.45 0.00 0.00 2.40
337 338 9.988815 AGCTTCAACGAATATTCTATATCACTT 57.011 29.630 13.45 0.00 0.00 3.16
394 395 9.210329 TCAAAGTTATATCGTTTTGTAAGCTCA 57.790 29.630 0.00 0.00 33.46 4.26
395 396 9.820229 CAAAGTTATATCGTTTTGTAAGCTCAA 57.180 29.630 0.00 0.00 0.00 3.02
407 408 8.696410 TTTTGTAAGCTCAAAACCTTTAACAG 57.304 30.769 8.76 0.00 40.73 3.16
408 409 7.633193 TTGTAAGCTCAAAACCTTTAACAGA 57.367 32.000 0.00 0.00 0.00 3.41
409 410 7.817418 TGTAAGCTCAAAACCTTTAACAGAT 57.183 32.000 0.00 0.00 0.00 2.90
410 411 7.648142 TGTAAGCTCAAAACCTTTAACAGATG 58.352 34.615 0.00 0.00 0.00 2.90
411 412 6.715347 AAGCTCAAAACCTTTAACAGATGT 57.285 33.333 0.00 0.00 0.00 3.06
412 413 7.817418 AAGCTCAAAACCTTTAACAGATGTA 57.183 32.000 0.00 0.00 0.00 2.29
413 414 7.817418 AGCTCAAAACCTTTAACAGATGTAA 57.183 32.000 0.00 0.00 0.00 2.41
414 415 8.409358 AGCTCAAAACCTTTAACAGATGTAAT 57.591 30.769 0.00 0.00 0.00 1.89
415 416 8.515414 AGCTCAAAACCTTTAACAGATGTAATC 58.485 33.333 0.00 0.00 46.04 1.75
429 430 3.979101 TGTAATCATGAGTCAGTGCCA 57.021 42.857 0.00 0.00 0.00 4.92
430 431 4.284829 TGTAATCATGAGTCAGTGCCAA 57.715 40.909 0.00 0.00 0.00 4.52
431 432 4.256110 TGTAATCATGAGTCAGTGCCAAG 58.744 43.478 0.00 0.00 0.00 3.61
432 433 3.430042 AATCATGAGTCAGTGCCAAGT 57.570 42.857 0.09 0.00 0.00 3.16
433 434 2.936919 TCATGAGTCAGTGCCAAGTT 57.063 45.000 0.00 0.00 0.00 2.66
434 435 2.771089 TCATGAGTCAGTGCCAAGTTC 58.229 47.619 0.00 0.00 0.00 3.01
435 436 2.369860 TCATGAGTCAGTGCCAAGTTCT 59.630 45.455 0.00 0.00 0.00 3.01
436 437 3.578282 TCATGAGTCAGTGCCAAGTTCTA 59.422 43.478 0.00 0.00 0.00 2.10
437 438 4.223700 TCATGAGTCAGTGCCAAGTTCTAT 59.776 41.667 0.00 0.00 0.00 1.98
438 439 4.623932 TGAGTCAGTGCCAAGTTCTATT 57.376 40.909 0.00 0.00 0.00 1.73
439 440 4.973168 TGAGTCAGTGCCAAGTTCTATTT 58.027 39.130 0.00 0.00 0.00 1.40
440 441 4.997395 TGAGTCAGTGCCAAGTTCTATTTC 59.003 41.667 0.00 0.00 0.00 2.17
441 442 4.327680 AGTCAGTGCCAAGTTCTATTTCC 58.672 43.478 0.00 0.00 0.00 3.13
442 443 4.072131 GTCAGTGCCAAGTTCTATTTCCA 58.928 43.478 0.00 0.00 0.00 3.53
443 444 4.702131 GTCAGTGCCAAGTTCTATTTCCAT 59.298 41.667 0.00 0.00 0.00 3.41
444 445 4.943705 TCAGTGCCAAGTTCTATTTCCATC 59.056 41.667 0.00 0.00 0.00 3.51
445 446 4.946157 CAGTGCCAAGTTCTATTTCCATCT 59.054 41.667 0.00 0.00 0.00 2.90
446 447 6.070251 TCAGTGCCAAGTTCTATTTCCATCTA 60.070 38.462 0.00 0.00 0.00 1.98
447 448 6.769822 CAGTGCCAAGTTCTATTTCCATCTAT 59.230 38.462 0.00 0.00 0.00 1.98
448 449 6.769822 AGTGCCAAGTTCTATTTCCATCTATG 59.230 38.462 0.00 0.00 0.00 2.23
465 466 6.344500 CATCTATGGATCCCTCTTTTATCGG 58.656 44.000 9.90 0.00 0.00 4.18
466 467 4.777896 TCTATGGATCCCTCTTTTATCGGG 59.222 45.833 9.90 0.00 39.41 5.14
467 468 2.771688 TGGATCCCTCTTTTATCGGGT 58.228 47.619 9.90 0.00 39.10 5.28
468 469 2.438021 TGGATCCCTCTTTTATCGGGTG 59.562 50.000 9.90 0.00 39.10 4.61
469 470 2.438392 GGATCCCTCTTTTATCGGGTGT 59.562 50.000 0.00 0.00 39.10 4.16
470 471 3.467803 GATCCCTCTTTTATCGGGTGTG 58.532 50.000 0.00 0.00 39.10 3.82
471 472 1.557832 TCCCTCTTTTATCGGGTGTGG 59.442 52.381 0.00 0.00 39.10 4.17
472 473 1.280998 CCCTCTTTTATCGGGTGTGGT 59.719 52.381 0.00 0.00 33.16 4.16
473 474 2.356135 CCTCTTTTATCGGGTGTGGTG 58.644 52.381 0.00 0.00 0.00 4.17
474 475 1.737793 CTCTTTTATCGGGTGTGGTGC 59.262 52.381 0.00 0.00 0.00 5.01
475 476 1.072489 TCTTTTATCGGGTGTGGTGCA 59.928 47.619 0.00 0.00 0.00 4.57
476 477 1.883275 CTTTTATCGGGTGTGGTGCAA 59.117 47.619 0.00 0.00 0.00 4.08
477 478 2.208132 TTTATCGGGTGTGGTGCAAT 57.792 45.000 0.00 0.00 0.00 3.56
478 479 1.458398 TTATCGGGTGTGGTGCAATG 58.542 50.000 0.00 0.00 0.00 2.82
479 480 0.393673 TATCGGGTGTGGTGCAATGG 60.394 55.000 0.00 0.00 0.00 3.16
480 481 2.424842 ATCGGGTGTGGTGCAATGGT 62.425 55.000 0.00 0.00 0.00 3.55
481 482 1.302913 CGGGTGTGGTGCAATGGTA 60.303 57.895 0.00 0.00 0.00 3.25
482 483 0.679640 CGGGTGTGGTGCAATGGTAT 60.680 55.000 0.00 0.00 0.00 2.73
483 484 1.102978 GGGTGTGGTGCAATGGTATC 58.897 55.000 0.00 0.00 0.00 2.24
484 485 1.340991 GGGTGTGGTGCAATGGTATCT 60.341 52.381 0.00 0.00 0.00 1.98
485 486 2.446435 GGTGTGGTGCAATGGTATCTT 58.554 47.619 0.00 0.00 0.00 2.40
486 487 2.825532 GGTGTGGTGCAATGGTATCTTT 59.174 45.455 0.00 0.00 0.00 2.52
487 488 3.367292 GGTGTGGTGCAATGGTATCTTTG 60.367 47.826 0.00 0.00 0.00 2.77
488 489 3.505680 GTGTGGTGCAATGGTATCTTTGA 59.494 43.478 5.82 0.00 31.89 2.69
489 490 4.158394 GTGTGGTGCAATGGTATCTTTGAT 59.842 41.667 5.82 0.00 31.89 2.57
490 491 4.771577 TGTGGTGCAATGGTATCTTTGATT 59.228 37.500 5.82 0.00 31.89 2.57
491 492 5.105797 TGTGGTGCAATGGTATCTTTGATTC 60.106 40.000 5.82 0.00 31.89 2.52
492 493 5.015515 TGGTGCAATGGTATCTTTGATTCA 58.984 37.500 5.82 0.00 31.89 2.57
493 494 5.479724 TGGTGCAATGGTATCTTTGATTCAA 59.520 36.000 5.82 0.00 31.89 2.69
494 495 6.014755 TGGTGCAATGGTATCTTTGATTCAAA 60.015 34.615 11.19 11.19 31.89 2.69
495 496 6.873076 GGTGCAATGGTATCTTTGATTCAAAA 59.127 34.615 12.62 5.21 32.75 2.44
496 497 7.063780 GGTGCAATGGTATCTTTGATTCAAAAG 59.936 37.037 12.62 7.52 38.31 2.27
543 544 9.601810 AGATTAAAAACCCTTAGAAATGTTCCT 57.398 29.630 0.00 0.00 0.00 3.36
547 548 8.721133 AAAAACCCTTAGAAATGTTCCTATGT 57.279 30.769 0.00 0.00 0.00 2.29
548 549 8.721133 AAAACCCTTAGAAATGTTCCTATGTT 57.279 30.769 0.00 0.00 0.00 2.71
549 550 7.703058 AACCCTTAGAAATGTTCCTATGTTG 57.297 36.000 0.00 0.00 0.00 3.33
550 551 6.187682 ACCCTTAGAAATGTTCCTATGTTGG 58.812 40.000 0.00 0.00 0.00 3.77
551 552 6.187682 CCCTTAGAAATGTTCCTATGTTGGT 58.812 40.000 0.00 0.00 0.00 3.67
552 553 6.663523 CCCTTAGAAATGTTCCTATGTTGGTT 59.336 38.462 0.00 0.00 0.00 3.67
553 554 7.362920 CCCTTAGAAATGTTCCTATGTTGGTTG 60.363 40.741 0.00 0.00 0.00 3.77
554 555 7.176690 CCTTAGAAATGTTCCTATGTTGGTTGT 59.823 37.037 0.00 0.00 0.00 3.32
555 556 6.976934 AGAAATGTTCCTATGTTGGTTGTT 57.023 33.333 0.00 0.00 0.00 2.83
556 557 7.360113 AGAAATGTTCCTATGTTGGTTGTTT 57.640 32.000 0.00 0.00 0.00 2.83
557 558 7.433680 AGAAATGTTCCTATGTTGGTTGTTTC 58.566 34.615 0.00 0.00 0.00 2.78
558 559 6.723298 AATGTTCCTATGTTGGTTGTTTCA 57.277 33.333 0.00 0.00 0.00 2.69
559 560 6.916360 ATGTTCCTATGTTGGTTGTTTCAT 57.084 33.333 0.00 0.00 0.00 2.57
560 561 6.723298 TGTTCCTATGTTGGTTGTTTCATT 57.277 33.333 0.00 0.00 0.00 2.57
561 562 6.744112 TGTTCCTATGTTGGTTGTTTCATTC 58.256 36.000 0.00 0.00 0.00 2.67
562 563 5.621197 TCCTATGTTGGTTGTTTCATTCG 57.379 39.130 0.00 0.00 0.00 3.34
563 564 5.067273 TCCTATGTTGGTTGTTTCATTCGT 58.933 37.500 0.00 0.00 0.00 3.85
564 565 6.231951 TCCTATGTTGGTTGTTTCATTCGTA 58.768 36.000 0.00 0.00 0.00 3.43
565 566 6.370442 TCCTATGTTGGTTGTTTCATTCGTAG 59.630 38.462 0.00 0.00 0.00 3.51
566 567 4.822036 TGTTGGTTGTTTCATTCGTAGG 57.178 40.909 0.00 0.00 0.00 3.18
567 568 4.452825 TGTTGGTTGTTTCATTCGTAGGA 58.547 39.130 0.00 0.00 0.00 2.94
568 569 5.067273 TGTTGGTTGTTTCATTCGTAGGAT 58.933 37.500 0.00 0.00 0.00 3.24
569 570 5.533154 TGTTGGTTGTTTCATTCGTAGGATT 59.467 36.000 0.00 0.00 0.00 3.01
570 571 6.039941 TGTTGGTTGTTTCATTCGTAGGATTT 59.960 34.615 0.00 0.00 0.00 2.17
571 572 6.007936 TGGTTGTTTCATTCGTAGGATTTG 57.992 37.500 0.00 0.00 0.00 2.32
572 573 5.765677 TGGTTGTTTCATTCGTAGGATTTGA 59.234 36.000 0.00 0.00 0.00 2.69
573 574 6.263392 TGGTTGTTTCATTCGTAGGATTTGAA 59.737 34.615 7.04 7.04 0.00 2.69
574 575 7.040062 TGGTTGTTTCATTCGTAGGATTTGAAT 60.040 33.333 10.37 0.00 32.77 2.57
575 576 7.484959 GGTTGTTTCATTCGTAGGATTTGAATC 59.515 37.037 10.37 10.22 30.23 2.52
576 577 7.680442 TGTTTCATTCGTAGGATTTGAATCA 57.320 32.000 13.15 13.15 37.15 2.57
577 578 7.526608 TGTTTCATTCGTAGGATTTGAATCAC 58.473 34.615 13.15 9.88 37.15 3.06
578 579 7.174080 TGTTTCATTCGTAGGATTTGAATCACA 59.826 33.333 13.15 11.41 37.15 3.58
579 580 7.864108 TTCATTCGTAGGATTTGAATCACAT 57.136 32.000 6.11 0.00 37.15 3.21
580 581 8.956533 TTCATTCGTAGGATTTGAATCACATA 57.043 30.769 6.11 0.00 37.15 2.29
581 582 9.559732 TTCATTCGTAGGATTTGAATCACATAT 57.440 29.630 6.11 0.00 37.15 1.78
582 583 8.992073 TCATTCGTAGGATTTGAATCACATATG 58.008 33.333 0.00 0.00 37.15 1.78
615 616 6.126038 TGGGTTATATATCCTTTTGCCCTCAA 60.126 38.462 9.27 0.00 34.88 3.02
882 888 2.363711 GACAGACAGCGGTGGTGACA 62.364 60.000 20.20 0.00 34.87 3.58
898 920 2.259818 CAACGGCGACAGAGAGCT 59.740 61.111 16.62 0.00 0.00 4.09
964 1012 2.601194 GAAGCTAGCTGTGGAGGGCC 62.601 65.000 20.16 0.00 0.00 5.80
1178 1227 0.750546 GGGGTAAGAATCGGGGCAAC 60.751 60.000 0.00 0.00 0.00 4.17
1261 1311 3.569701 GGTGACATGCTTCTTTCTTTGGA 59.430 43.478 0.00 0.00 0.00 3.53
1303 1353 5.766670 ACTCTGATGAATGAACTGCAAGAAA 59.233 36.000 0.00 0.00 37.43 2.52
1537 1587 5.333263 GCACTGGTTGTAATGTTGAAAATGC 60.333 40.000 0.00 0.00 0.00 3.56
1718 1774 9.820725 TTCAGAAACTTTTGATCAATGAAATGT 57.179 25.926 9.40 0.00 0.00 2.71
1920 2005 7.327214 TGTTGAAACTTTTTGTGGAAGCTAAT 58.673 30.769 0.00 0.00 0.00 1.73
1921 2006 7.821846 TGTTGAAACTTTTTGTGGAAGCTAATT 59.178 29.630 0.00 0.00 0.00 1.40
1922 2007 7.769272 TGAAACTTTTTGTGGAAGCTAATTG 57.231 32.000 0.00 0.00 0.00 2.32
1923 2008 7.551585 TGAAACTTTTTGTGGAAGCTAATTGA 58.448 30.769 0.00 0.00 0.00 2.57
1924 2009 8.037758 TGAAACTTTTTGTGGAAGCTAATTGAA 58.962 29.630 0.00 0.00 0.00 2.69
1925 2010 8.962884 AAACTTTTTGTGGAAGCTAATTGAAT 57.037 26.923 0.00 0.00 0.00 2.57
1926 2011 8.962884 AACTTTTTGTGGAAGCTAATTGAATT 57.037 26.923 0.00 0.00 0.00 2.17
2197 2295 0.039035 AAATTGGTGCGGCTAGGGAA 59.961 50.000 0.00 0.00 0.00 3.97
2199 2297 0.258774 ATTGGTGCGGCTAGGGAATT 59.741 50.000 0.00 0.00 0.00 2.17
2274 2372 6.995091 GCTAGGACAGATGGAAATACTTTGAT 59.005 38.462 0.00 0.00 0.00 2.57
2300 2398 5.368523 TGGGTAGGGAAAGAAGGTATACATG 59.631 44.000 5.01 0.00 0.00 3.21
2414 2534 4.458989 GCCACATGATTTTGGTTAGAGTGA 59.541 41.667 0.00 0.00 35.09 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.329545 GAACACCAGCTGGCCGGA 62.330 66.667 33.06 0.00 39.32 5.14
1 2 4.641645 TGAACACCAGCTGGCCGG 62.642 66.667 33.06 23.45 39.32 6.13
2 3 3.052082 CTGAACACCAGCTGGCCG 61.052 66.667 33.06 25.26 39.32 6.13
3 4 2.674380 CCTGAACACCAGCTGGCC 60.674 66.667 33.06 18.81 41.57 5.36
4 5 3.368571 GCCTGAACACCAGCTGGC 61.369 66.667 33.06 16.73 41.57 4.85
5 6 3.052082 CGCCTGAACACCAGCTGG 61.052 66.667 31.60 31.60 41.57 4.85
6 7 3.052082 CCGCCTGAACACCAGCTG 61.052 66.667 6.78 6.78 41.57 4.24
12 13 3.723348 GTTCGCCCGCCTGAACAC 61.723 66.667 6.92 0.00 43.06 3.32
27 28 4.595538 TTCACAGTCGCGCCCGTT 62.596 61.111 0.00 0.00 35.54 4.44
28 29 3.876589 ATTTCACAGTCGCGCCCGT 62.877 57.895 0.00 0.00 35.54 5.28
29 30 3.118454 ATTTCACAGTCGCGCCCG 61.118 61.111 0.00 0.00 0.00 6.13
30 31 1.573829 TTCATTTCACAGTCGCGCCC 61.574 55.000 0.00 0.00 0.00 6.13
31 32 0.237235 TTTCATTTCACAGTCGCGCC 59.763 50.000 0.00 0.00 0.00 6.53
32 33 1.906966 CATTTCATTTCACAGTCGCGC 59.093 47.619 0.00 0.00 0.00 6.86
33 34 3.454042 TCATTTCATTTCACAGTCGCG 57.546 42.857 0.00 0.00 0.00 5.87
34 35 4.161333 CCTTCATTTCATTTCACAGTCGC 58.839 43.478 0.00 0.00 0.00 5.19
35 36 4.726416 CCCTTCATTTCATTTCACAGTCG 58.274 43.478 0.00 0.00 0.00 4.18
36 37 4.488879 GCCCTTCATTTCATTTCACAGTC 58.511 43.478 0.00 0.00 0.00 3.51
37 38 3.057315 CGCCCTTCATTTCATTTCACAGT 60.057 43.478 0.00 0.00 0.00 3.55
38 39 3.504863 CGCCCTTCATTTCATTTCACAG 58.495 45.455 0.00 0.00 0.00 3.66
39 40 2.230992 CCGCCCTTCATTTCATTTCACA 59.769 45.455 0.00 0.00 0.00 3.58
40 41 2.231235 ACCGCCCTTCATTTCATTTCAC 59.769 45.455 0.00 0.00 0.00 3.18
41 42 2.524306 ACCGCCCTTCATTTCATTTCA 58.476 42.857 0.00 0.00 0.00 2.69
42 43 3.253230 CAACCGCCCTTCATTTCATTTC 58.747 45.455 0.00 0.00 0.00 2.17
43 44 2.028203 CCAACCGCCCTTCATTTCATTT 60.028 45.455 0.00 0.00 0.00 2.32
44 45 1.550072 CCAACCGCCCTTCATTTCATT 59.450 47.619 0.00 0.00 0.00 2.57
45 46 1.185315 CCAACCGCCCTTCATTTCAT 58.815 50.000 0.00 0.00 0.00 2.57
46 47 0.897863 CCCAACCGCCCTTCATTTCA 60.898 55.000 0.00 0.00 0.00 2.69
47 48 1.890174 CCCAACCGCCCTTCATTTC 59.110 57.895 0.00 0.00 0.00 2.17
48 49 2.282783 GCCCAACCGCCCTTCATTT 61.283 57.895 0.00 0.00 0.00 2.32
49 50 2.679996 GCCCAACCGCCCTTCATT 60.680 61.111 0.00 0.00 0.00 2.57
77 78 2.202610 GCTTCAAATTCGGCGGCC 60.203 61.111 9.54 9.54 0.00 6.13
78 79 1.514873 CTGCTTCAAATTCGGCGGC 60.515 57.895 7.21 0.00 0.00 6.53
79 80 0.240945 AACTGCTTCAAATTCGGCGG 59.759 50.000 7.21 0.00 37.14 6.13
80 81 1.330306 CAACTGCTTCAAATTCGGCG 58.670 50.000 0.00 0.00 0.00 6.46
81 82 1.063031 GCAACTGCTTCAAATTCGGC 58.937 50.000 0.00 0.00 38.21 5.54
82 83 2.420628 TGCAACTGCTTCAAATTCGG 57.579 45.000 2.95 0.00 42.66 4.30
83 84 3.829948 AGATGCAACTGCTTCAAATTCG 58.170 40.909 17.00 0.00 44.66 3.34
84 85 3.850273 CGAGATGCAACTGCTTCAAATTC 59.150 43.478 17.00 7.20 44.66 2.17
85 86 3.254166 ACGAGATGCAACTGCTTCAAATT 59.746 39.130 17.00 0.00 44.66 1.82
86 87 2.816087 ACGAGATGCAACTGCTTCAAAT 59.184 40.909 17.00 0.24 44.66 2.32
87 88 2.031769 CACGAGATGCAACTGCTTCAAA 60.032 45.455 17.00 0.00 44.66 2.69
88 89 1.532437 CACGAGATGCAACTGCTTCAA 59.468 47.619 17.00 0.00 44.66 2.69
89 90 1.150827 CACGAGATGCAACTGCTTCA 58.849 50.000 17.00 0.00 44.66 3.02
90 91 1.432514 TCACGAGATGCAACTGCTTC 58.567 50.000 0.00 9.03 43.17 3.86
91 92 1.736126 CATCACGAGATGCAACTGCTT 59.264 47.619 9.93 0.00 44.61 3.91
92 93 1.366679 CATCACGAGATGCAACTGCT 58.633 50.000 9.93 0.00 44.61 4.24
93 94 3.891786 CATCACGAGATGCAACTGC 57.108 52.632 9.93 0.00 44.61 4.40
101 102 6.682423 TGATGCAAATTTACATCACGAGAT 57.318 33.333 24.14 0.00 45.79 2.75
108 109 9.584839 GAAAACTTTGTGATGCAAATTTACATC 57.415 29.630 20.21 20.21 45.00 3.06
109 110 9.107177 TGAAAACTTTGTGATGCAAATTTACAT 57.893 25.926 3.46 3.46 45.00 2.29
110 111 8.484641 TGAAAACTTTGTGATGCAAATTTACA 57.515 26.923 0.00 0.00 45.00 2.41
111 112 9.934190 ATTGAAAACTTTGTGATGCAAATTTAC 57.066 25.926 0.00 0.00 45.00 2.01
113 114 9.857957 AAATTGAAAACTTTGTGATGCAAATTT 57.142 22.222 0.00 0.00 45.00 1.82
114 115 9.857957 AAAATTGAAAACTTTGTGATGCAAATT 57.142 22.222 0.00 0.00 45.00 1.82
116 117 9.766277 GTAAAATTGAAAACTTTGTGATGCAAA 57.234 25.926 0.00 0.00 44.05 3.68
117 118 8.939929 TGTAAAATTGAAAACTTTGTGATGCAA 58.060 25.926 0.00 0.00 34.87 4.08
118 119 8.484641 TGTAAAATTGAAAACTTTGTGATGCA 57.515 26.923 0.00 0.00 0.00 3.96
119 120 9.584839 GATGTAAAATTGAAAACTTTGTGATGC 57.415 29.630 0.00 0.00 0.00 3.91
122 123 9.092876 GGTGATGTAAAATTGAAAACTTTGTGA 57.907 29.630 0.00 0.00 0.00 3.58
123 124 8.055402 CGGTGATGTAAAATTGAAAACTTTGTG 58.945 33.333 0.00 0.00 0.00 3.33
124 125 7.762159 ACGGTGATGTAAAATTGAAAACTTTGT 59.238 29.630 0.00 0.00 0.00 2.83
125 126 8.055402 CACGGTGATGTAAAATTGAAAACTTTG 58.945 33.333 0.74 0.00 0.00 2.77
126 127 7.976734 TCACGGTGATGTAAAATTGAAAACTTT 59.023 29.630 6.76 0.00 0.00 2.66
127 128 7.484975 TCACGGTGATGTAAAATTGAAAACTT 58.515 30.769 6.76 0.00 0.00 2.66
128 129 7.033530 TCACGGTGATGTAAAATTGAAAACT 57.966 32.000 6.76 0.00 0.00 2.66
129 130 6.362283 CCTCACGGTGATGTAAAATTGAAAAC 59.638 38.462 11.86 0.00 0.00 2.43
130 131 6.442952 CCTCACGGTGATGTAAAATTGAAAA 58.557 36.000 11.86 0.00 0.00 2.29
131 132 5.563867 GCCTCACGGTGATGTAAAATTGAAA 60.564 40.000 11.86 0.00 0.00 2.69
132 133 4.083003 GCCTCACGGTGATGTAAAATTGAA 60.083 41.667 11.86 0.00 0.00 2.69
133 134 3.438781 GCCTCACGGTGATGTAAAATTGA 59.561 43.478 11.86 0.00 0.00 2.57
134 135 3.427503 GGCCTCACGGTGATGTAAAATTG 60.428 47.826 11.86 0.00 0.00 2.32
135 136 2.752903 GGCCTCACGGTGATGTAAAATT 59.247 45.455 11.86 0.00 0.00 1.82
136 137 2.365582 GGCCTCACGGTGATGTAAAAT 58.634 47.619 11.86 0.00 0.00 1.82
137 138 1.816074 GGCCTCACGGTGATGTAAAA 58.184 50.000 11.86 0.00 0.00 1.52
138 139 0.390603 CGGCCTCACGGTGATGTAAA 60.391 55.000 11.86 0.00 0.00 2.01
139 140 1.216977 CGGCCTCACGGTGATGTAA 59.783 57.895 11.86 0.00 0.00 2.41
140 141 2.889617 CGGCCTCACGGTGATGTA 59.110 61.111 11.86 0.00 0.00 2.29
141 142 4.760047 GCGGCCTCACGGTGATGT 62.760 66.667 11.86 0.00 0.00 3.06
149 150 4.778143 ATTGGACCGCGGCCTCAC 62.778 66.667 30.01 16.44 0.00 3.51
150 151 3.561120 AAATTGGACCGCGGCCTCA 62.561 57.895 30.01 21.51 0.00 3.86
151 152 1.873270 AAAAATTGGACCGCGGCCTC 61.873 55.000 30.01 20.61 0.00 4.70
152 153 1.906333 AAAAATTGGACCGCGGCCT 60.906 52.632 30.01 13.68 0.00 5.19
153 154 2.654289 AAAAATTGGACCGCGGCC 59.346 55.556 28.58 26.88 0.00 6.13
168 169 7.178573 TCCAACAGATGGTCCATATGTAAAAA 58.821 34.615 28.06 13.92 44.05 1.94
169 170 6.726379 TCCAACAGATGGTCCATATGTAAAA 58.274 36.000 28.06 15.44 44.05 1.52
170 171 6.320434 TCCAACAGATGGTCCATATGTAAA 57.680 37.500 28.06 15.74 44.05 2.01
171 172 5.687441 GCTCCAACAGATGGTCCATATGTAA 60.687 44.000 28.06 17.11 44.05 2.41
172 173 4.202357 GCTCCAACAGATGGTCCATATGTA 60.202 45.833 28.06 14.67 44.05 2.29
173 174 3.434167 GCTCCAACAGATGGTCCATATGT 60.434 47.826 23.64 23.64 46.28 2.29
183 184 0.877071 AAACGCTGCTCCAACAGATG 59.123 50.000 0.00 0.00 40.25 2.90
184 185 1.609208 AAAACGCTGCTCCAACAGAT 58.391 45.000 0.00 0.00 40.25 2.90
185 186 1.388547 AAAAACGCTGCTCCAACAGA 58.611 45.000 0.00 0.00 40.25 3.41
186 187 3.944871 AAAAACGCTGCTCCAACAG 57.055 47.368 0.00 0.00 40.80 3.16
206 207 2.484742 ACTTTTGGACCGTATGGGAC 57.515 50.000 5.82 0.00 40.75 4.46
207 208 3.054948 CCTAACTTTTGGACCGTATGGGA 60.055 47.826 5.82 0.00 40.75 4.37
208 209 3.275999 CCTAACTTTTGGACCGTATGGG 58.724 50.000 5.82 0.00 40.75 4.00
209 210 3.946606 ACCTAACTTTTGGACCGTATGG 58.053 45.455 0.00 0.00 42.84 2.74
210 211 7.619964 AAATACCTAACTTTTGGACCGTATG 57.380 36.000 0.00 0.00 0.00 2.39
211 212 8.640063 AAAAATACCTAACTTTTGGACCGTAT 57.360 30.769 0.00 0.00 0.00 3.06
212 213 8.998377 GTAAAAATACCTAACTTTTGGACCGTA 58.002 33.333 0.00 0.00 0.00 4.02
213 214 6.964807 AAAAATACCTAACTTTTGGACCGT 57.035 33.333 0.00 0.00 0.00 4.83
214 215 7.873910 TGTAAAAATACCTAACTTTTGGACCG 58.126 34.615 0.00 0.00 0.00 4.79
222 223 8.517056 CGGTCCAAATGTAAAAATACCTAACTT 58.483 33.333 0.00 0.00 0.00 2.66
223 224 7.666804 ACGGTCCAAATGTAAAAATACCTAACT 59.333 33.333 0.00 0.00 0.00 2.24
224 225 7.819644 ACGGTCCAAATGTAAAAATACCTAAC 58.180 34.615 0.00 0.00 0.00 2.34
225 226 7.884354 AGACGGTCCAAATGTAAAAATACCTAA 59.116 33.333 4.14 0.00 0.00 2.69
226 227 7.396418 AGACGGTCCAAATGTAAAAATACCTA 58.604 34.615 4.14 0.00 0.00 3.08
227 228 6.243148 AGACGGTCCAAATGTAAAAATACCT 58.757 36.000 4.14 0.00 0.00 3.08
228 229 6.505044 AGACGGTCCAAATGTAAAAATACC 57.495 37.500 4.14 0.00 0.00 2.73
229 230 9.498307 CAATAGACGGTCCAAATGTAAAAATAC 57.502 33.333 4.14 0.00 0.00 1.89
230 231 8.679100 CCAATAGACGGTCCAAATGTAAAAATA 58.321 33.333 4.14 0.00 0.00 1.40
231 232 7.394923 TCCAATAGACGGTCCAAATGTAAAAAT 59.605 33.333 4.14 0.00 0.00 1.82
232 233 6.715718 TCCAATAGACGGTCCAAATGTAAAAA 59.284 34.615 4.14 0.00 0.00 1.94
233 234 6.239396 TCCAATAGACGGTCCAAATGTAAAA 58.761 36.000 4.14 0.00 0.00 1.52
234 235 5.806818 TCCAATAGACGGTCCAAATGTAAA 58.193 37.500 4.14 0.00 0.00 2.01
235 236 5.188163 TCTCCAATAGACGGTCCAAATGTAA 59.812 40.000 4.14 0.00 0.00 2.41
236 237 4.712829 TCTCCAATAGACGGTCCAAATGTA 59.287 41.667 4.14 0.00 0.00 2.29
237 238 3.517901 TCTCCAATAGACGGTCCAAATGT 59.482 43.478 4.14 0.00 0.00 2.71
238 239 4.137116 TCTCCAATAGACGGTCCAAATG 57.863 45.455 4.14 0.00 0.00 2.32
239 240 4.708177 CATCTCCAATAGACGGTCCAAAT 58.292 43.478 4.14 0.00 36.93 2.32
240 241 3.681594 GCATCTCCAATAGACGGTCCAAA 60.682 47.826 4.14 0.00 36.93 3.28
241 242 2.158957 GCATCTCCAATAGACGGTCCAA 60.159 50.000 4.14 0.00 36.93 3.53
242 243 1.412710 GCATCTCCAATAGACGGTCCA 59.587 52.381 4.14 0.00 36.93 4.02
243 244 1.689273 AGCATCTCCAATAGACGGTCC 59.311 52.381 4.14 0.00 36.93 4.46
244 245 3.019933 GAGCATCTCCAATAGACGGTC 57.980 52.381 0.00 0.00 37.71 4.79
274 275 9.859427 CACATGTTTCACAATAGGTCATATTTT 57.141 29.630 0.00 0.00 31.40 1.82
275 276 9.023962 ACACATGTTTCACAATAGGTCATATTT 57.976 29.630 0.00 0.00 31.40 1.40
276 277 8.579850 ACACATGTTTCACAATAGGTCATATT 57.420 30.769 0.00 0.00 34.24 1.28
277 278 8.579850 AACACATGTTTCACAATAGGTCATAT 57.420 30.769 0.00 0.00 33.93 1.78
278 279 7.994425 AACACATGTTTCACAATAGGTCATA 57.006 32.000 0.00 0.00 33.93 2.15
279 280 6.899393 AACACATGTTTCACAATAGGTCAT 57.101 33.333 0.00 0.00 33.93 3.06
280 281 6.707440 AAACACATGTTTCACAATAGGTCA 57.293 33.333 4.13 0.00 44.15 4.02
281 282 7.199766 TCAAAACACATGTTTCACAATAGGTC 58.800 34.615 10.30 0.00 46.47 3.85
282 283 7.106439 TCAAAACACATGTTTCACAATAGGT 57.894 32.000 10.30 0.00 46.47 3.08
283 284 8.084073 AGATCAAAACACATGTTTCACAATAGG 58.916 33.333 10.30 0.00 46.47 2.57
284 285 9.467258 AAGATCAAAACACATGTTTCACAATAG 57.533 29.630 10.30 0.00 46.47 1.73
286 287 9.467258 CTAAGATCAAAACACATGTTTCACAAT 57.533 29.630 10.30 2.90 46.47 2.71
287 288 7.434897 GCTAAGATCAAAACACATGTTTCACAA 59.565 33.333 10.30 0.00 46.47 3.33
288 289 6.917477 GCTAAGATCAAAACACATGTTTCACA 59.083 34.615 10.30 0.00 46.47 3.58
289 290 7.141363 AGCTAAGATCAAAACACATGTTTCAC 58.859 34.615 10.30 3.61 46.47 3.18
290 291 7.275888 AGCTAAGATCAAAACACATGTTTCA 57.724 32.000 10.30 1.66 46.47 2.69
291 292 7.862372 TGAAGCTAAGATCAAAACACATGTTTC 59.138 33.333 10.30 0.00 46.47 2.78
293 294 7.275888 TGAAGCTAAGATCAAAACACATGTT 57.724 32.000 0.00 0.00 40.50 2.71
294 295 6.882610 TGAAGCTAAGATCAAAACACATGT 57.117 33.333 0.00 0.00 0.00 3.21
295 296 6.303970 CGTTGAAGCTAAGATCAAAACACATG 59.696 38.462 0.18 0.00 37.31 3.21
296 297 6.204688 TCGTTGAAGCTAAGATCAAAACACAT 59.795 34.615 0.18 0.00 37.31 3.21
297 298 5.525745 TCGTTGAAGCTAAGATCAAAACACA 59.474 36.000 0.18 0.00 37.31 3.72
298 299 5.985781 TCGTTGAAGCTAAGATCAAAACAC 58.014 37.500 0.18 0.00 37.31 3.32
299 300 6.612247 TTCGTTGAAGCTAAGATCAAAACA 57.388 33.333 0.18 0.00 37.31 2.83
300 301 9.774742 AATATTCGTTGAAGCTAAGATCAAAAC 57.225 29.630 0.18 0.00 37.31 2.43
301 302 9.988350 GAATATTCGTTGAAGCTAAGATCAAAA 57.012 29.630 0.00 0.00 37.31 2.44
302 303 9.383519 AGAATATTCGTTGAAGCTAAGATCAAA 57.616 29.630 9.78 0.00 37.31 2.69
303 304 8.948631 AGAATATTCGTTGAAGCTAAGATCAA 57.051 30.769 9.78 0.00 33.37 2.57
311 312 9.988815 AAGTGATATAGAATATTCGTTGAAGCT 57.011 29.630 9.78 3.19 0.00 3.74
368 369 9.210329 TGAGCTTACAAAACGATATAACTTTGA 57.790 29.630 8.93 0.00 33.84 2.69
369 370 9.820229 TTGAGCTTACAAAACGATATAACTTTG 57.180 29.630 0.00 0.00 35.39 2.77
382 383 8.524487 TCTGTTAAAGGTTTTGAGCTTACAAAA 58.476 29.630 8.76 8.76 44.08 2.44
383 384 8.057536 TCTGTTAAAGGTTTTGAGCTTACAAA 57.942 30.769 0.00 0.00 37.87 2.83
384 385 7.633193 TCTGTTAAAGGTTTTGAGCTTACAA 57.367 32.000 0.00 0.00 0.00 2.41
385 386 7.284489 ACATCTGTTAAAGGTTTTGAGCTTACA 59.716 33.333 0.00 0.00 0.00 2.41
386 387 7.649057 ACATCTGTTAAAGGTTTTGAGCTTAC 58.351 34.615 0.00 0.00 0.00 2.34
387 388 7.817418 ACATCTGTTAAAGGTTTTGAGCTTA 57.183 32.000 0.00 0.00 0.00 3.09
388 389 6.715347 ACATCTGTTAAAGGTTTTGAGCTT 57.285 33.333 0.00 0.00 0.00 3.74
389 390 7.817418 TTACATCTGTTAAAGGTTTTGAGCT 57.183 32.000 0.00 0.00 0.00 4.09
390 391 8.296713 TGATTACATCTGTTAAAGGTTTTGAGC 58.703 33.333 0.00 0.00 0.00 4.26
395 396 9.520515 ACTCATGATTACATCTGTTAAAGGTTT 57.479 29.630 0.00 0.00 34.15 3.27
396 397 9.167311 GACTCATGATTACATCTGTTAAAGGTT 57.833 33.333 0.00 0.00 34.15 3.50
397 398 8.321353 TGACTCATGATTACATCTGTTAAAGGT 58.679 33.333 0.00 0.00 34.15 3.50
398 399 8.722480 TGACTCATGATTACATCTGTTAAAGG 57.278 34.615 0.00 0.00 34.15 3.11
399 400 9.376075 ACTGACTCATGATTACATCTGTTAAAG 57.624 33.333 0.00 0.00 34.15 1.85
400 401 9.154847 CACTGACTCATGATTACATCTGTTAAA 57.845 33.333 0.00 0.00 34.15 1.52
401 402 7.278646 GCACTGACTCATGATTACATCTGTTAA 59.721 37.037 0.00 0.00 34.15 2.01
402 403 6.758416 GCACTGACTCATGATTACATCTGTTA 59.242 38.462 0.00 0.00 34.15 2.41
403 404 5.583854 GCACTGACTCATGATTACATCTGTT 59.416 40.000 0.00 0.00 34.15 3.16
404 405 5.114780 GCACTGACTCATGATTACATCTGT 58.885 41.667 0.00 0.00 34.15 3.41
405 406 4.510711 GGCACTGACTCATGATTACATCTG 59.489 45.833 0.00 0.00 34.15 2.90
406 407 4.162888 TGGCACTGACTCATGATTACATCT 59.837 41.667 0.00 0.00 34.15 2.90
407 408 4.445453 TGGCACTGACTCATGATTACATC 58.555 43.478 0.00 0.00 34.15 3.06
408 409 4.492494 TGGCACTGACTCATGATTACAT 57.508 40.909 0.00 0.00 37.19 2.29
409 410 3.979101 TGGCACTGACTCATGATTACA 57.021 42.857 0.00 0.00 0.00 2.41
410 411 4.256920 ACTTGGCACTGACTCATGATTAC 58.743 43.478 0.00 0.00 0.00 1.89
411 412 4.558226 ACTTGGCACTGACTCATGATTA 57.442 40.909 0.00 0.00 0.00 1.75
412 413 3.430042 ACTTGGCACTGACTCATGATT 57.570 42.857 0.00 0.00 0.00 2.57
413 414 3.008813 AGAACTTGGCACTGACTCATGAT 59.991 43.478 0.00 0.00 0.00 2.45
414 415 2.369860 AGAACTTGGCACTGACTCATGA 59.630 45.455 0.00 0.00 0.00 3.07
415 416 2.775890 AGAACTTGGCACTGACTCATG 58.224 47.619 0.00 0.00 0.00 3.07
416 417 4.833478 ATAGAACTTGGCACTGACTCAT 57.167 40.909 0.00 0.00 0.00 2.90
417 418 4.623932 AATAGAACTTGGCACTGACTCA 57.376 40.909 0.00 0.00 0.00 3.41
418 419 4.393371 GGAAATAGAACTTGGCACTGACTC 59.607 45.833 0.00 0.00 0.00 3.36
419 420 4.202461 TGGAAATAGAACTTGGCACTGACT 60.202 41.667 0.00 0.00 0.00 3.41
420 421 4.072131 TGGAAATAGAACTTGGCACTGAC 58.928 43.478 0.00 0.00 0.00 3.51
421 422 4.365514 TGGAAATAGAACTTGGCACTGA 57.634 40.909 0.00 0.00 0.00 3.41
422 423 4.946157 AGATGGAAATAGAACTTGGCACTG 59.054 41.667 0.00 0.00 0.00 3.66
423 424 5.184892 AGATGGAAATAGAACTTGGCACT 57.815 39.130 0.00 0.00 0.00 4.40
424 425 6.963796 CATAGATGGAAATAGAACTTGGCAC 58.036 40.000 0.00 0.00 0.00 5.01
441 442 6.344500 CCGATAAAAGAGGGATCCATAGATG 58.656 44.000 15.23 0.00 30.90 2.90
442 443 6.552445 CCGATAAAAGAGGGATCCATAGAT 57.448 41.667 15.23 0.00 34.57 1.98
453 454 2.356135 CACCACACCCGATAAAAGAGG 58.644 52.381 0.00 0.00 0.00 3.69
454 455 1.737793 GCACCACACCCGATAAAAGAG 59.262 52.381 0.00 0.00 0.00 2.85
455 456 1.072489 TGCACCACACCCGATAAAAGA 59.928 47.619 0.00 0.00 0.00 2.52
456 457 1.529226 TGCACCACACCCGATAAAAG 58.471 50.000 0.00 0.00 0.00 2.27
457 458 1.982660 TTGCACCACACCCGATAAAA 58.017 45.000 0.00 0.00 0.00 1.52
458 459 1.815613 CATTGCACCACACCCGATAAA 59.184 47.619 0.00 0.00 0.00 1.40
459 460 1.458398 CATTGCACCACACCCGATAA 58.542 50.000 0.00 0.00 0.00 1.75
460 461 0.393673 CCATTGCACCACACCCGATA 60.394 55.000 0.00 0.00 0.00 2.92
461 462 1.678635 CCATTGCACCACACCCGAT 60.679 57.895 0.00 0.00 0.00 4.18
462 463 1.769716 TACCATTGCACCACACCCGA 61.770 55.000 0.00 0.00 0.00 5.14
463 464 0.679640 ATACCATTGCACCACACCCG 60.680 55.000 0.00 0.00 0.00 5.28
464 465 1.102978 GATACCATTGCACCACACCC 58.897 55.000 0.00 0.00 0.00 4.61
465 466 2.128771 AGATACCATTGCACCACACC 57.871 50.000 0.00 0.00 0.00 4.16
466 467 3.505680 TCAAAGATACCATTGCACCACAC 59.494 43.478 0.00 0.00 0.00 3.82
467 468 3.760738 TCAAAGATACCATTGCACCACA 58.239 40.909 0.00 0.00 0.00 4.17
468 469 4.989279 ATCAAAGATACCATTGCACCAC 57.011 40.909 0.00 0.00 0.00 4.16
469 470 5.015515 TGAATCAAAGATACCATTGCACCA 58.984 37.500 0.00 0.00 0.00 4.17
470 471 5.581126 TGAATCAAAGATACCATTGCACC 57.419 39.130 0.00 0.00 0.00 5.01
471 472 7.814107 TCTTTTGAATCAAAGATACCATTGCAC 59.186 33.333 8.51 0.00 34.72 4.57
472 473 7.894708 TCTTTTGAATCAAAGATACCATTGCA 58.105 30.769 8.51 0.00 34.72 4.08
473 474 8.937634 ATCTTTTGAATCAAAGATACCATTGC 57.062 30.769 8.51 0.00 34.72 3.56
517 518 9.601810 AGGAACATTTCTAAGGGTTTTTAATCT 57.398 29.630 0.00 0.00 0.00 2.40
521 522 9.816787 ACATAGGAACATTTCTAAGGGTTTTTA 57.183 29.630 0.00 0.00 0.00 1.52
522 523 8.721133 ACATAGGAACATTTCTAAGGGTTTTT 57.279 30.769 0.00 0.00 0.00 1.94
523 524 8.585018 CAACATAGGAACATTTCTAAGGGTTTT 58.415 33.333 0.00 0.00 0.00 2.43
524 525 7.178451 CCAACATAGGAACATTTCTAAGGGTTT 59.822 37.037 0.00 0.00 0.00 3.27
525 526 6.663523 CCAACATAGGAACATTTCTAAGGGTT 59.336 38.462 0.00 0.00 0.00 4.11
526 527 6.187682 CCAACATAGGAACATTTCTAAGGGT 58.812 40.000 0.00 0.00 0.00 4.34
527 528 6.187682 ACCAACATAGGAACATTTCTAAGGG 58.812 40.000 0.00 0.00 0.00 3.95
528 529 7.176690 ACAACCAACATAGGAACATTTCTAAGG 59.823 37.037 0.00 0.00 0.00 2.69
529 530 8.110860 ACAACCAACATAGGAACATTTCTAAG 57.889 34.615 0.00 0.00 0.00 2.18
530 531 8.472007 AACAACCAACATAGGAACATTTCTAA 57.528 30.769 0.00 0.00 0.00 2.10
531 532 8.472007 AAACAACCAACATAGGAACATTTCTA 57.528 30.769 0.00 0.00 0.00 2.10
532 533 6.976934 AACAACCAACATAGGAACATTTCT 57.023 33.333 0.00 0.00 0.00 2.52
533 534 7.206687 TGAAACAACCAACATAGGAACATTTC 58.793 34.615 0.00 0.00 0.00 2.17
534 535 7.118496 TGAAACAACCAACATAGGAACATTT 57.882 32.000 0.00 0.00 0.00 2.32
535 536 6.723298 TGAAACAACCAACATAGGAACATT 57.277 33.333 0.00 0.00 0.00 2.71
536 537 6.916360 ATGAAACAACCAACATAGGAACAT 57.084 33.333 0.00 0.00 0.00 2.71
537 538 6.514212 CGAATGAAACAACCAACATAGGAACA 60.514 38.462 0.00 0.00 0.00 3.18
538 539 5.856455 CGAATGAAACAACCAACATAGGAAC 59.144 40.000 0.00 0.00 0.00 3.62
539 540 5.533154 ACGAATGAAACAACCAACATAGGAA 59.467 36.000 0.00 0.00 0.00 3.36
540 541 5.067273 ACGAATGAAACAACCAACATAGGA 58.933 37.500 0.00 0.00 0.00 2.94
541 542 5.371115 ACGAATGAAACAACCAACATAGG 57.629 39.130 0.00 0.00 0.00 2.57
542 543 6.370442 TCCTACGAATGAAACAACCAACATAG 59.630 38.462 0.00 0.00 0.00 2.23
543 544 6.231951 TCCTACGAATGAAACAACCAACATA 58.768 36.000 0.00 0.00 0.00 2.29
544 545 5.067273 TCCTACGAATGAAACAACCAACAT 58.933 37.500 0.00 0.00 0.00 2.71
545 546 4.452825 TCCTACGAATGAAACAACCAACA 58.547 39.130 0.00 0.00 0.00 3.33
546 547 5.622770 ATCCTACGAATGAAACAACCAAC 57.377 39.130 0.00 0.00 0.00 3.77
547 548 6.263392 TCAAATCCTACGAATGAAACAACCAA 59.737 34.615 0.00 0.00 0.00 3.67
548 549 5.765677 TCAAATCCTACGAATGAAACAACCA 59.234 36.000 0.00 0.00 0.00 3.67
549 550 6.249035 TCAAATCCTACGAATGAAACAACC 57.751 37.500 0.00 0.00 0.00 3.77
550 551 8.020819 TGATTCAAATCCTACGAATGAAACAAC 58.979 33.333 0.00 0.00 32.61 3.32
551 552 8.020819 GTGATTCAAATCCTACGAATGAAACAA 58.979 33.333 0.00 0.00 34.98 2.83
552 553 7.174080 TGTGATTCAAATCCTACGAATGAAACA 59.826 33.333 0.00 0.00 33.90 2.83
553 554 7.526608 TGTGATTCAAATCCTACGAATGAAAC 58.473 34.615 0.00 0.00 33.90 2.78
554 555 7.680442 TGTGATTCAAATCCTACGAATGAAA 57.320 32.000 0.00 0.00 33.90 2.69
555 556 7.864108 ATGTGATTCAAATCCTACGAATGAA 57.136 32.000 0.00 0.00 34.38 2.57
556 557 8.992073 CATATGTGATTCAAATCCTACGAATGA 58.008 33.333 0.00 0.00 34.50 2.57
557 558 8.992073 TCATATGTGATTCAAATCCTACGAATG 58.008 33.333 1.90 0.00 34.50 2.67
558 559 9.730705 ATCATATGTGATTCAAATCCTACGAAT 57.269 29.630 1.90 0.00 42.37 3.34
597 598 5.139727 CACCATTGAGGGCAAAAGGATATA 58.860 41.667 0.00 0.00 43.89 0.86
598 599 3.962718 CACCATTGAGGGCAAAAGGATAT 59.037 43.478 0.00 0.00 43.89 1.63
615 616 4.640771 AAACTGAGTACATGGACACCAT 57.359 40.909 11.55 0.00 46.37 3.55
692 693 3.118956 GGAGATGACAGAGTTCACGGAAT 60.119 47.826 0.00 0.00 0.00 3.01
763 764 4.192317 GTCTGAATAGAATTGGGCGTCTT 58.808 43.478 0.00 0.00 34.01 3.01
882 888 2.569134 GAGCTCTCTGTCGCCGTT 59.431 61.111 6.43 0.00 0.00 4.44
915 937 4.030216 TGTGCTCTCTCTCTCTCTCTCTA 58.970 47.826 0.00 0.00 0.00 2.43
964 1012 2.892425 GGATCTCAACGCCGCCAG 60.892 66.667 0.00 0.00 0.00 4.85
1099 1147 0.765510 GGTGTGTGAGAAACCCTCCT 59.234 55.000 0.00 0.00 41.25 3.69
1198 1248 4.038271 TCAACCCATTGCTCAAAGATCT 57.962 40.909 0.00 0.00 35.63 2.75
1261 1311 0.179062 GTCTTGGCCAGAGCATCGAT 60.179 55.000 5.11 0.00 42.67 3.59
1303 1353 2.629137 TGCACAACCATTCTTCATGCTT 59.371 40.909 0.00 0.00 32.81 3.91
1537 1587 5.279306 CCTCCATAATTCATGCCTTTCCATG 60.279 44.000 0.00 0.00 43.04 3.66
1590 1640 7.883391 TGACCAACATTTAAACTAGGTGAAA 57.117 32.000 7.84 0.00 0.00 2.69
1921 2006 9.199645 TGGCTCTGGAATAATTCAAATAATTCA 57.800 29.630 0.00 0.00 31.38 2.57
1924 2009 9.822185 GTTTGGCTCTGGAATAATTCAAATAAT 57.178 29.630 0.00 0.00 0.00 1.28
1925 2010 8.811017 TGTTTGGCTCTGGAATAATTCAAATAA 58.189 29.630 0.00 0.00 0.00 1.40
1926 2011 8.359875 TGTTTGGCTCTGGAATAATTCAAATA 57.640 30.769 0.00 0.00 0.00 1.40
1927 2012 7.243604 TGTTTGGCTCTGGAATAATTCAAAT 57.756 32.000 0.00 0.00 0.00 2.32
1928 2013 6.662865 TGTTTGGCTCTGGAATAATTCAAA 57.337 33.333 0.00 0.00 0.00 2.69
2197 2295 0.680921 CATGCGGTCCTGGGTTCAAT 60.681 55.000 0.00 0.00 0.00 2.57
2199 2297 2.350895 CATGCGGTCCTGGGTTCA 59.649 61.111 0.00 0.00 0.00 3.18
2274 2372 6.695624 TGTATACCTTCTTTCCCTACCCATA 58.304 40.000 0.00 0.00 0.00 2.74
2300 2398 1.069227 GCAAACATTCACGGTCTCACC 60.069 52.381 0.00 0.00 34.05 4.02
2414 2534 6.616577 TCCCTTTAAATCCTAAACCAAGTGT 58.383 36.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.