Multiple sequence alignment - TraesCS7D01G341500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G341500 chr7D 100.000 3626 0 0 1 3626 437201755 437205380 0.000000e+00 6697.0
1 TraesCS7D01G341500 chr7D 90.639 673 33 5 2955 3626 147576231 147576874 0.000000e+00 867.0
2 TraesCS7D01G341500 chr7D 90.653 674 23 19 2955 3626 313717582 313716947 0.000000e+00 859.0
3 TraesCS7D01G341500 chr7D 95.720 514 19 2 3116 3626 64681825 64682338 0.000000e+00 824.0
4 TraesCS7D01G341500 chr7D 80.180 444 79 4 1 435 63934422 63933979 1.260000e-84 324.0
5 TraesCS7D01G341500 chr7D 97.143 35 1 0 461 495 23581637 23581671 3.910000e-05 60.2
6 TraesCS7D01G341500 chr7B 94.066 2410 101 19 533 2919 454181127 454183517 0.000000e+00 3620.0
7 TraesCS7D01G341500 chr7B 87.519 657 43 4 2970 3626 123402358 123402975 0.000000e+00 723.0
8 TraesCS7D01G341500 chr7B 85.380 513 27 9 2955 3466 201003313 201003778 4.210000e-134 488.0
9 TraesCS7D01G341500 chr7B 97.561 41 1 0 2915 2955 104029231 104029191 1.810000e-08 71.3
10 TraesCS7D01G341500 chr7A 91.003 1356 64 14 1586 2914 487480064 487481388 0.000000e+00 1775.0
11 TraesCS7D01G341500 chr7A 92.234 837 40 10 722 1542 487478947 487479774 0.000000e+00 1162.0
12 TraesCS7D01G341500 chr7A 96.086 511 20 0 3116 3626 670761736 670761226 0.000000e+00 833.0
13 TraesCS7D01G341500 chr3B 93.109 682 47 0 1947 2628 829392294 829392975 0.000000e+00 1000.0
14 TraesCS7D01G341500 chr3B 84.984 626 58 18 852 1468 829391613 829392211 1.440000e-168 603.0
15 TraesCS7D01G341500 chr3B 79.646 678 134 4 1951 2626 64794626 64795301 5.440000e-133 484.0
16 TraesCS7D01G341500 chr3B 100.000 31 0 0 464 494 724605737 724605707 1.410000e-04 58.4
17 TraesCS7D01G341500 chr3D 92.375 682 52 0 1947 2628 611673983 611674664 0.000000e+00 972.0
18 TraesCS7D01G341500 chr3D 92.136 674 27 6 2955 3626 526481207 526481856 0.000000e+00 928.0
19 TraesCS7D01G341500 chr3D 84.760 584 65 13 852 1431 611673286 611673849 6.800000e-157 564.0
20 TraesCS7D01G341500 chr3D 88.154 363 19 2 2955 3316 264130269 264130608 9.370000e-111 411.0
21 TraesCS7D01G341500 chr3A 91.714 700 54 2 1947 2643 746462856 746463554 0.000000e+00 968.0
22 TraesCS7D01G341500 chr3A 91.803 610 27 7 3017 3626 79334459 79335045 0.000000e+00 828.0
23 TraesCS7D01G341500 chr3A 86.325 585 54 9 852 1431 746462180 746462743 6.650000e-172 614.0
24 TraesCS7D01G341500 chr1D 92.273 673 28 4 2955 3626 479342304 479342953 0.000000e+00 933.0
25 TraesCS7D01G341500 chr1D 87.500 312 30 4 1127 1431 460527044 460527353 5.760000e-93 351.0
26 TraesCS7D01G341500 chr5D 91.900 679 22 7 2955 3626 14741189 14740537 0.000000e+00 918.0
27 TraesCS7D01G341500 chr5D 92.090 670 26 5 2960 3626 287810530 287811175 0.000000e+00 918.0
28 TraesCS7D01G341500 chr5D 89.362 611 27 11 3016 3626 497304584 497305156 0.000000e+00 734.0
29 TraesCS7D01G341500 chr5D 90.625 96 9 0 2970 3065 292684249 292684154 1.060000e-25 128.0
30 TraesCS7D01G341500 chrUn 90.118 678 38 9 2949 3626 79925197 79925845 0.000000e+00 854.0
31 TraesCS7D01G341500 chrUn 90.137 659 40 3 2970 3626 108948251 108948886 0.000000e+00 833.0
32 TraesCS7D01G341500 chr6B 87.967 723 86 1 1925 2647 6629229 6628508 0.000000e+00 852.0
33 TraesCS7D01G341500 chr6B 88.602 658 35 7 2970 3626 114516119 114516737 0.000000e+00 763.0
34 TraesCS7D01G341500 chr6B 88.121 463 50 2 1001 1459 6630537 6630076 2.460000e-151 545.0
35 TraesCS7D01G341500 chr4D 90.385 676 25 8 2955 3626 92670487 92671126 0.000000e+00 852.0
36 TraesCS7D01G341500 chr4D 89.896 673 41 12 2955 3626 490102893 490103539 0.000000e+00 841.0
37 TraesCS7D01G341500 chr4D 81.887 530 86 5 17 538 470443385 470442858 4.300000e-119 438.0
38 TraesCS7D01G341500 chr6D 87.347 735 92 1 1913 2647 3345824 3345091 0.000000e+00 841.0
39 TraesCS7D01G341500 chr6D 88.063 444 50 3 1022 1464 3347189 3346748 1.150000e-144 523.0
40 TraesCS7D01G341500 chr6D 88.736 435 19 3 2955 3388 98075630 98076035 4.180000e-139 505.0
41 TraesCS7D01G341500 chr2D 89.747 673 35 4 2955 3626 489652273 489651634 0.000000e+00 830.0
42 TraesCS7D01G341500 chr2D 85.743 491 58 4 1 481 317599861 317599373 3.230000e-140 508.0
43 TraesCS7D01G341500 chr2D 87.987 308 13 2 2955 3261 494031968 494032252 3.470000e-90 342.0
44 TraesCS7D01G341500 chr2D 90.476 105 10 0 2970 3074 6718738 6718842 4.880000e-29 139.0
45 TraesCS7D01G341500 chr6A 86.649 734 95 3 1915 2647 2178733 2178002 0.000000e+00 809.0
46 TraesCS7D01G341500 chr6A 83.361 607 67 20 859 1464 2180809 2180236 6.890000e-147 531.0
47 TraesCS7D01G341500 chr6A 83.784 74 5 3 2840 2913 2177828 2177762 3.020000e-06 63.9
48 TraesCS7D01G341500 chr5B 86.567 670 39 13 2970 3626 6261492 6260861 0.000000e+00 691.0
49 TraesCS7D01G341500 chr5B 85.781 640 51 11 2970 3608 28659752 28659152 3.050000e-180 641.0
50 TraesCS7D01G341500 chr1B 83.644 483 71 3 14 492 573759128 573759606 7.140000e-122 448.0
51 TraesCS7D01G341500 chr2A 81.670 491 75 8 19 499 13817520 13818005 9.440000e-106 394.0
52 TraesCS7D01G341500 chr2A 82.040 451 77 1 23 469 175672031 175672481 7.350000e-102 381.0
53 TraesCS7D01G341500 chr5A 81.490 443 77 3 1 439 340411947 340411506 3.440000e-95 359.0
54 TraesCS7D01G341500 chr1A 82.995 394 61 5 3 392 520919600 520919209 5.760000e-93 351.0
55 TraesCS7D01G341500 chr4A 81.579 418 65 7 14 421 519176407 519176822 5.800000e-88 335.0
56 TraesCS7D01G341500 chr4B 92.308 39 3 0 461 499 631576072 631576034 5.060000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G341500 chr7D 437201755 437205380 3625 False 6697.000000 6697 100.0000 1 3626 1 chr7D.!!$F4 3625
1 TraesCS7D01G341500 chr7D 147576231 147576874 643 False 867.000000 867 90.6390 2955 3626 1 chr7D.!!$F3 671
2 TraesCS7D01G341500 chr7D 313716947 313717582 635 True 859.000000 859 90.6530 2955 3626 1 chr7D.!!$R2 671
3 TraesCS7D01G341500 chr7D 64681825 64682338 513 False 824.000000 824 95.7200 3116 3626 1 chr7D.!!$F2 510
4 TraesCS7D01G341500 chr7B 454181127 454183517 2390 False 3620.000000 3620 94.0660 533 2919 1 chr7B.!!$F3 2386
5 TraesCS7D01G341500 chr7B 123402358 123402975 617 False 723.000000 723 87.5190 2970 3626 1 chr7B.!!$F1 656
6 TraesCS7D01G341500 chr7A 487478947 487481388 2441 False 1468.500000 1775 91.6185 722 2914 2 chr7A.!!$F1 2192
7 TraesCS7D01G341500 chr7A 670761226 670761736 510 True 833.000000 833 96.0860 3116 3626 1 chr7A.!!$R1 510
8 TraesCS7D01G341500 chr3B 829391613 829392975 1362 False 801.500000 1000 89.0465 852 2628 2 chr3B.!!$F2 1776
9 TraesCS7D01G341500 chr3B 64794626 64795301 675 False 484.000000 484 79.6460 1951 2626 1 chr3B.!!$F1 675
10 TraesCS7D01G341500 chr3D 526481207 526481856 649 False 928.000000 928 92.1360 2955 3626 1 chr3D.!!$F2 671
11 TraesCS7D01G341500 chr3D 611673286 611674664 1378 False 768.000000 972 88.5675 852 2628 2 chr3D.!!$F3 1776
12 TraesCS7D01G341500 chr3A 79334459 79335045 586 False 828.000000 828 91.8030 3017 3626 1 chr3A.!!$F1 609
13 TraesCS7D01G341500 chr3A 746462180 746463554 1374 False 791.000000 968 89.0195 852 2643 2 chr3A.!!$F2 1791
14 TraesCS7D01G341500 chr1D 479342304 479342953 649 False 933.000000 933 92.2730 2955 3626 1 chr1D.!!$F2 671
15 TraesCS7D01G341500 chr5D 14740537 14741189 652 True 918.000000 918 91.9000 2955 3626 1 chr5D.!!$R1 671
16 TraesCS7D01G341500 chr5D 287810530 287811175 645 False 918.000000 918 92.0900 2960 3626 1 chr5D.!!$F1 666
17 TraesCS7D01G341500 chr5D 497304584 497305156 572 False 734.000000 734 89.3620 3016 3626 1 chr5D.!!$F2 610
18 TraesCS7D01G341500 chrUn 79925197 79925845 648 False 854.000000 854 90.1180 2949 3626 1 chrUn.!!$F1 677
19 TraesCS7D01G341500 chrUn 108948251 108948886 635 False 833.000000 833 90.1370 2970 3626 1 chrUn.!!$F2 656
20 TraesCS7D01G341500 chr6B 114516119 114516737 618 False 763.000000 763 88.6020 2970 3626 1 chr6B.!!$F1 656
21 TraesCS7D01G341500 chr6B 6628508 6630537 2029 True 698.500000 852 88.0440 1001 2647 2 chr6B.!!$R1 1646
22 TraesCS7D01G341500 chr4D 92670487 92671126 639 False 852.000000 852 90.3850 2955 3626 1 chr4D.!!$F1 671
23 TraesCS7D01G341500 chr4D 490102893 490103539 646 False 841.000000 841 89.8960 2955 3626 1 chr4D.!!$F2 671
24 TraesCS7D01G341500 chr4D 470442858 470443385 527 True 438.000000 438 81.8870 17 538 1 chr4D.!!$R1 521
25 TraesCS7D01G341500 chr6D 3345091 3347189 2098 True 682.000000 841 87.7050 1022 2647 2 chr6D.!!$R1 1625
26 TraesCS7D01G341500 chr2D 489651634 489652273 639 True 830.000000 830 89.7470 2955 3626 1 chr2D.!!$R2 671
27 TraesCS7D01G341500 chr6A 2177762 2180809 3047 True 467.966667 809 84.5980 859 2913 3 chr6A.!!$R1 2054
28 TraesCS7D01G341500 chr5B 6260861 6261492 631 True 691.000000 691 86.5670 2970 3626 1 chr5B.!!$R1 656
29 TraesCS7D01G341500 chr5B 28659152 28659752 600 True 641.000000 641 85.7810 2970 3608 1 chr5B.!!$R2 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.107654 GGACGCCAAGATGCTAACCT 60.108 55.0 0.0 0.0 0.0 3.50 F
999 1033 0.036022 AGGCAGAGTCAGAGGCAAAC 59.964 55.0 0.0 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1153 1.079256 CACCAGGGTCTCCAGGAGA 59.921 63.158 15.98 15.98 41.82 3.71 R
2947 4512 0.248866 CACTTTTTGCGGTGGACCAC 60.249 55.000 16.86 16.86 35.14 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.286813 AGGAGGACCATAATCAAGGAGA 57.713 45.455 0.00 0.00 38.94 3.71
22 23 4.230455 AGGAGGACCATAATCAAGGAGAG 58.770 47.826 0.00 0.00 38.94 3.20
23 24 3.326297 GGAGGACCATAATCAAGGAGAGG 59.674 52.174 0.00 0.00 35.97 3.69
24 25 4.227197 GAGGACCATAATCAAGGAGAGGA 58.773 47.826 0.00 0.00 0.00 3.71
25 26 4.635473 AGGACCATAATCAAGGAGAGGAA 58.365 43.478 0.00 0.00 0.00 3.36
26 27 4.657969 AGGACCATAATCAAGGAGAGGAAG 59.342 45.833 0.00 0.00 0.00 3.46
27 28 4.202409 GGACCATAATCAAGGAGAGGAAGG 60.202 50.000 0.00 0.00 0.00 3.46
28 29 4.635473 ACCATAATCAAGGAGAGGAAGGA 58.365 43.478 0.00 0.00 0.00 3.36
84 85 2.892425 CGGAGGACGCCAAGATGC 60.892 66.667 0.00 0.00 34.82 3.91
86 87 1.823295 GGAGGACGCCAAGATGCTA 59.177 57.895 0.00 0.00 0.00 3.49
90 91 0.107654 GGACGCCAAGATGCTAACCT 60.108 55.000 0.00 0.00 0.00 3.50
96 97 3.488047 CGCCAAGATGCTAACCTTGAATG 60.488 47.826 0.00 0.00 41.56 2.67
101 102 4.184629 AGATGCTAACCTTGAATGTCGAC 58.815 43.478 9.11 9.11 0.00 4.20
109 110 3.071023 ACCTTGAATGTCGACTCTTTGGA 59.929 43.478 17.92 0.00 0.00 3.53
129 130 0.939419 TGCCGATGCAAGAATGATCG 59.061 50.000 0.00 0.00 46.66 3.69
155 156 0.742505 CCGTCCGCTACCAGATGTTA 59.257 55.000 0.00 0.00 0.00 2.41
156 157 1.535437 CCGTCCGCTACCAGATGTTAC 60.535 57.143 0.00 0.00 0.00 2.50
158 159 2.223735 CGTCCGCTACCAGATGTTACAT 60.224 50.000 0.00 0.00 0.00 2.29
161 162 2.034179 CCGCTACCAGATGTTACATCGA 59.966 50.000 18.18 6.04 0.00 3.59
165 166 4.202020 GCTACCAGATGTTACATCGACAGA 60.202 45.833 18.18 5.11 0.00 3.41
176 177 6.929049 TGTTACATCGACAGAAAGATGAGTTT 59.071 34.615 11.74 0.00 45.08 2.66
184 185 2.200170 AAAGATGAGTTTGCGGCGGC 62.200 55.000 9.78 9.68 40.52 6.53
191 192 4.460683 TTTGCGGCGGCGGACTAT 62.461 61.111 33.02 0.00 44.10 2.12
195 196 4.647615 CGGCGGCGGACTATGAGG 62.648 72.222 25.36 0.00 0.00 3.86
196 197 3.224324 GGCGGCGGACTATGAGGA 61.224 66.667 9.78 0.00 0.00 3.71
197 198 2.027751 GCGGCGGACTATGAGGAC 59.972 66.667 9.78 0.00 0.00 3.85
198 199 2.331805 CGGCGGACTATGAGGACG 59.668 66.667 0.00 0.00 0.00 4.79
200 201 2.353607 GCGGACTATGAGGACGCG 60.354 66.667 3.53 3.53 40.84 6.01
201 202 2.331805 CGGACTATGAGGACGCGG 59.668 66.667 12.47 0.00 0.00 6.46
202 203 2.478890 CGGACTATGAGGACGCGGT 61.479 63.158 12.47 0.00 0.00 5.68
203 204 1.065928 GGACTATGAGGACGCGGTG 59.934 63.158 12.47 0.00 0.00 4.94
204 205 1.065928 GACTATGAGGACGCGGTGG 59.934 63.158 12.47 0.00 0.00 4.61
205 206 1.379443 ACTATGAGGACGCGGTGGA 60.379 57.895 12.47 0.00 0.00 4.02
206 207 1.360551 CTATGAGGACGCGGTGGAG 59.639 63.158 12.47 0.00 0.00 3.86
207 208 2.076622 CTATGAGGACGCGGTGGAGG 62.077 65.000 12.47 0.00 0.00 4.30
241 242 4.451150 GACGGCGCACCTCCATGA 62.451 66.667 10.83 0.00 0.00 3.07
242 243 3.740128 GACGGCGCACCTCCATGAT 62.740 63.158 10.83 0.00 0.00 2.45
243 244 2.969238 CGGCGCACCTCCATGATC 60.969 66.667 10.83 0.00 0.00 2.92
244 245 2.969238 GGCGCACCTCCATGATCG 60.969 66.667 10.83 0.00 0.00 3.69
245 246 2.969238 GCGCACCTCCATGATCGG 60.969 66.667 0.30 0.00 0.00 4.18
246 247 2.280389 CGCACCTCCATGATCGGG 60.280 66.667 0.00 0.00 0.00 5.14
247 248 2.111878 GCACCTCCATGATCGGGG 59.888 66.667 0.00 0.00 0.00 5.73
248 249 2.443394 GCACCTCCATGATCGGGGA 61.443 63.158 0.00 5.19 0.00 4.81
251 252 3.554716 CTCCATGATCGGGGAGCA 58.445 61.111 16.76 0.00 43.80 4.26
252 253 1.370437 CTCCATGATCGGGGAGCAG 59.630 63.158 16.76 0.00 43.80 4.24
253 254 2.281345 CCATGATCGGGGAGCAGC 60.281 66.667 0.00 0.00 29.44 5.25
254 255 2.815945 CCATGATCGGGGAGCAGCT 61.816 63.158 0.00 0.00 29.44 4.24
255 256 1.597302 CATGATCGGGGAGCAGCTG 60.597 63.158 10.11 10.11 29.44 4.24
256 257 2.815945 ATGATCGGGGAGCAGCTGG 61.816 63.158 17.12 0.00 29.44 4.85
257 258 4.925861 GATCGGGGAGCAGCTGGC 62.926 72.222 17.12 7.98 45.30 4.85
266 267 2.362120 GCAGCTGGCTGGGATTGT 60.362 61.111 21.76 0.00 43.77 2.71
267 268 1.980772 GCAGCTGGCTGGGATTGTT 60.981 57.895 21.76 0.00 43.77 2.83
268 269 1.888018 CAGCTGGCTGGGATTGTTG 59.112 57.895 14.11 0.00 40.17 3.33
269 270 0.609957 CAGCTGGCTGGGATTGTTGA 60.610 55.000 14.11 0.00 40.17 3.18
270 271 0.333993 AGCTGGCTGGGATTGTTGAT 59.666 50.000 0.00 0.00 0.00 2.57
271 272 0.743097 GCTGGCTGGGATTGTTGATC 59.257 55.000 0.00 0.00 0.00 2.92
278 279 2.408333 GGATTGTTGATCCGGCAGG 58.592 57.895 0.00 0.00 44.73 4.85
279 280 1.103398 GGATTGTTGATCCGGCAGGG 61.103 60.000 2.05 0.00 44.73 4.45
280 281 1.728490 GATTGTTGATCCGGCAGGGC 61.728 60.000 2.05 0.00 38.33 5.19
281 282 2.497792 ATTGTTGATCCGGCAGGGCA 62.498 55.000 2.05 0.00 38.33 5.36
282 283 2.825836 GTTGATCCGGCAGGGCAG 60.826 66.667 2.05 0.00 38.33 4.85
283 284 3.008517 TTGATCCGGCAGGGCAGA 61.009 61.111 2.05 0.00 38.33 4.26
284 285 2.601702 TTGATCCGGCAGGGCAGAA 61.602 57.895 2.05 0.00 38.33 3.02
285 286 2.135903 TTGATCCGGCAGGGCAGAAA 62.136 55.000 2.05 0.00 38.33 2.52
286 287 1.152881 GATCCGGCAGGGCAGAAAT 60.153 57.895 2.05 0.00 38.33 2.17
287 288 1.450531 GATCCGGCAGGGCAGAAATG 61.451 60.000 2.05 0.00 38.33 2.32
288 289 3.830192 CCGGCAGGGCAGAAATGC 61.830 66.667 0.00 0.00 39.25 3.56
289 290 3.063704 CGGCAGGGCAGAAATGCA 61.064 61.111 2.29 0.00 41.78 3.96
290 291 2.420568 CGGCAGGGCAGAAATGCAT 61.421 57.895 0.00 0.00 41.78 3.96
291 292 1.143183 GGCAGGGCAGAAATGCATG 59.857 57.895 0.00 1.89 41.78 4.06
292 293 1.143183 GCAGGGCAGAAATGCATGG 59.857 57.895 0.00 0.00 39.75 3.66
293 294 1.324740 GCAGGGCAGAAATGCATGGA 61.325 55.000 0.00 0.00 39.75 3.41
294 295 0.458669 CAGGGCAGAAATGCATGGAC 59.541 55.000 0.00 0.00 36.33 4.02
295 296 0.333993 AGGGCAGAAATGCATGGACT 59.666 50.000 0.00 0.00 36.33 3.85
296 297 1.565759 AGGGCAGAAATGCATGGACTA 59.434 47.619 0.00 0.00 36.33 2.59
297 298 1.678101 GGGCAGAAATGCATGGACTAC 59.322 52.381 0.00 0.00 36.33 2.73
298 299 1.678101 GGCAGAAATGCATGGACTACC 59.322 52.381 0.00 0.76 36.33 3.18
314 315 7.496346 TGGACTACCAGACTGATATTCTTTT 57.504 36.000 3.32 0.00 41.77 2.27
315 316 7.331026 TGGACTACCAGACTGATATTCTTTTG 58.669 38.462 3.32 0.00 41.77 2.44
316 317 6.763610 GGACTACCAGACTGATATTCTTTTGG 59.236 42.308 3.32 0.00 35.97 3.28
317 318 7.364762 GGACTACCAGACTGATATTCTTTTGGA 60.365 40.741 3.32 0.00 35.97 3.53
318 319 8.095452 ACTACCAGACTGATATTCTTTTGGAT 57.905 34.615 3.32 0.00 0.00 3.41
319 320 8.552296 ACTACCAGACTGATATTCTTTTGGATT 58.448 33.333 3.32 0.00 0.00 3.01
320 321 9.401058 CTACCAGACTGATATTCTTTTGGATTT 57.599 33.333 3.32 0.00 0.00 2.17
321 322 8.059798 ACCAGACTGATATTCTTTTGGATTTG 57.940 34.615 3.32 0.00 0.00 2.32
322 323 7.123247 ACCAGACTGATATTCTTTTGGATTTGG 59.877 37.037 3.32 0.00 0.00 3.28
323 324 6.976925 CAGACTGATATTCTTTTGGATTTGGC 59.023 38.462 0.00 0.00 0.00 4.52
324 325 6.097412 AGACTGATATTCTTTTGGATTTGGCC 59.903 38.462 0.00 0.00 0.00 5.36
325 326 5.721000 ACTGATATTCTTTTGGATTTGGCCA 59.279 36.000 0.00 0.00 35.78 5.36
326 327 6.384886 ACTGATATTCTTTTGGATTTGGCCAT 59.615 34.615 6.09 0.00 37.86 4.40
327 328 6.584488 TGATATTCTTTTGGATTTGGCCATG 58.416 36.000 6.09 0.00 37.86 3.66
328 329 4.914177 ATTCTTTTGGATTTGGCCATGT 57.086 36.364 6.09 0.00 37.86 3.21
329 330 7.344093 TGATATTCTTTTGGATTTGGCCATGTA 59.656 33.333 6.09 0.00 37.86 2.29
330 331 5.815233 TTCTTTTGGATTTGGCCATGTAA 57.185 34.783 6.09 0.00 37.86 2.41
331 332 5.815233 TCTTTTGGATTTGGCCATGTAAA 57.185 34.783 6.09 0.00 37.86 2.01
332 333 6.179906 TCTTTTGGATTTGGCCATGTAAAA 57.820 33.333 6.09 9.64 37.86 1.52
333 334 6.595682 TCTTTTGGATTTGGCCATGTAAAAA 58.404 32.000 6.09 9.68 37.86 1.94
334 335 6.484977 TCTTTTGGATTTGGCCATGTAAAAAC 59.515 34.615 6.09 0.00 37.86 2.43
335 336 5.559148 TTGGATTTGGCCATGTAAAAACT 57.441 34.783 6.09 0.00 37.86 2.66
336 337 6.672266 TTGGATTTGGCCATGTAAAAACTA 57.328 33.333 6.09 0.00 37.86 2.24
337 338 6.672266 TGGATTTGGCCATGTAAAAACTAA 57.328 33.333 6.09 0.00 31.66 2.24
338 339 7.067496 TGGATTTGGCCATGTAAAAACTAAA 57.933 32.000 6.09 0.00 31.66 1.85
339 340 6.931840 TGGATTTGGCCATGTAAAAACTAAAC 59.068 34.615 6.09 0.00 31.66 2.01
340 341 6.931840 GGATTTGGCCATGTAAAAACTAAACA 59.068 34.615 6.09 0.00 0.00 2.83
341 342 7.606073 GGATTTGGCCATGTAAAAACTAAACAT 59.394 33.333 6.09 0.00 34.22 2.71
342 343 9.646427 GATTTGGCCATGTAAAAACTAAACATA 57.354 29.630 6.09 0.00 32.70 2.29
358 359 9.596308 AACTAAACATATTTACCTCTTTTGGGT 57.404 29.630 0.00 0.00 40.53 4.51
359 360 9.596308 ACTAAACATATTTACCTCTTTTGGGTT 57.404 29.630 0.00 0.00 38.19 4.11
361 362 8.721133 AAACATATTTACCTCTTTTGGGTTCT 57.279 30.769 0.00 0.00 38.19 3.01
362 363 7.703058 ACATATTTACCTCTTTTGGGTTCTG 57.297 36.000 0.00 0.00 38.19 3.02
363 364 7.466804 ACATATTTACCTCTTTTGGGTTCTGA 58.533 34.615 0.00 0.00 38.19 3.27
364 365 8.116026 ACATATTTACCTCTTTTGGGTTCTGAT 58.884 33.333 0.00 0.00 38.19 2.90
365 366 8.624776 CATATTTACCTCTTTTGGGTTCTGATC 58.375 37.037 0.00 0.00 38.19 2.92
366 367 3.059352 ACCTCTTTTGGGTTCTGATCG 57.941 47.619 0.00 0.00 32.46 3.69
367 368 2.372172 ACCTCTTTTGGGTTCTGATCGT 59.628 45.455 0.00 0.00 32.46 3.73
368 369 2.744202 CCTCTTTTGGGTTCTGATCGTG 59.256 50.000 0.00 0.00 0.00 4.35
369 370 2.151202 TCTTTTGGGTTCTGATCGTGC 58.849 47.619 0.00 0.00 0.00 5.34
370 371 1.879380 CTTTTGGGTTCTGATCGTGCA 59.121 47.619 0.00 0.00 0.00 4.57
371 372 2.198827 TTTGGGTTCTGATCGTGCAT 57.801 45.000 0.00 0.00 0.00 3.96
372 373 1.452110 TTGGGTTCTGATCGTGCATG 58.548 50.000 0.00 0.00 0.00 4.06
373 374 1.026182 TGGGTTCTGATCGTGCATGC 61.026 55.000 11.82 11.82 0.00 4.06
374 375 1.349627 GGTTCTGATCGTGCATGCG 59.650 57.895 14.09 0.00 0.00 4.73
375 376 1.083806 GGTTCTGATCGTGCATGCGA 61.084 55.000 14.09 5.38 45.32 5.10
381 382 2.582226 TCGTGCATGCGATCCGAC 60.582 61.111 14.09 3.19 35.83 4.79
382 383 3.976375 CGTGCATGCGATCCGACG 61.976 66.667 14.09 12.31 0.00 5.12
383 384 2.885644 GTGCATGCGATCCGACGT 60.886 61.111 14.09 0.00 35.59 4.34
384 385 2.125713 TGCATGCGATCCGACGTT 60.126 55.556 14.09 0.00 35.59 3.99
385 386 2.321060 GCATGCGATCCGACGTTG 59.679 61.111 0.00 0.00 35.59 4.10
386 387 3.005898 CATGCGATCCGACGTTGG 58.994 61.111 16.40 16.40 35.59 3.77
387 388 1.809619 CATGCGATCCGACGTTGGT 60.810 57.895 21.46 9.06 35.59 3.67
388 389 1.809619 ATGCGATCCGACGTTGGTG 60.810 57.895 21.46 13.32 35.59 4.17
389 390 2.431942 GCGATCCGACGTTGGTGT 60.432 61.111 21.46 11.59 35.59 4.16
390 391 2.726691 GCGATCCGACGTTGGTGTG 61.727 63.158 21.46 12.65 35.59 3.82
391 392 1.081041 CGATCCGACGTTGGTGTGA 60.081 57.895 21.46 2.29 0.00 3.58
392 393 0.457853 CGATCCGACGTTGGTGTGAT 60.458 55.000 21.46 7.59 0.00 3.06
393 394 1.278238 GATCCGACGTTGGTGTGATC 58.722 55.000 21.46 12.86 0.00 2.92
394 395 0.108329 ATCCGACGTTGGTGTGATCC 60.108 55.000 21.46 0.00 0.00 3.36
395 396 2.092291 CCGACGTTGGTGTGATCCG 61.092 63.158 14.24 0.00 0.00 4.18
396 397 2.092291 CGACGTTGGTGTGATCCGG 61.092 63.158 0.00 0.00 0.00 5.14
397 398 2.358247 ACGTTGGTGTGATCCGGC 60.358 61.111 0.00 0.00 0.00 6.13
398 399 3.487202 CGTTGGTGTGATCCGGCG 61.487 66.667 0.00 0.00 0.00 6.46
399 400 3.799755 GTTGGTGTGATCCGGCGC 61.800 66.667 0.00 0.00 0.00 6.53
413 414 3.857854 GCGCGCTGTGTGGATCAG 61.858 66.667 26.67 0.00 36.18 2.90
414 415 2.125952 CGCGCTGTGTGGATCAGA 60.126 61.111 5.56 0.00 35.20 3.27
415 416 2.163390 CGCGCTGTGTGGATCAGAG 61.163 63.158 5.56 0.00 39.96 3.35
416 417 1.079543 GCGCTGTGTGGATCAGAGT 60.080 57.895 0.00 0.00 39.30 3.24
417 418 0.173481 GCGCTGTGTGGATCAGAGTA 59.827 55.000 0.00 0.00 39.30 2.59
418 419 1.914634 CGCTGTGTGGATCAGAGTAC 58.085 55.000 0.00 0.00 39.30 2.73
419 420 1.202348 CGCTGTGTGGATCAGAGTACA 59.798 52.381 0.00 0.00 39.30 2.90
420 421 2.159184 CGCTGTGTGGATCAGAGTACAT 60.159 50.000 0.00 0.00 39.30 2.29
421 422 3.677148 CGCTGTGTGGATCAGAGTACATT 60.677 47.826 0.00 0.00 39.30 2.71
422 423 3.620374 GCTGTGTGGATCAGAGTACATTG 59.380 47.826 0.00 0.00 39.30 2.82
423 424 4.186926 CTGTGTGGATCAGAGTACATTGG 58.813 47.826 0.00 0.00 35.20 3.16
424 425 3.837731 TGTGTGGATCAGAGTACATTGGA 59.162 43.478 0.00 0.00 0.00 3.53
425 426 4.285775 TGTGTGGATCAGAGTACATTGGAA 59.714 41.667 0.00 0.00 0.00 3.53
426 427 5.045651 TGTGTGGATCAGAGTACATTGGAAT 60.046 40.000 0.00 0.00 0.00 3.01
427 428 5.882557 GTGTGGATCAGAGTACATTGGAATT 59.117 40.000 0.00 0.00 0.00 2.17
428 429 6.375455 GTGTGGATCAGAGTACATTGGAATTT 59.625 38.462 0.00 0.00 0.00 1.82
429 430 6.375174 TGTGGATCAGAGTACATTGGAATTTG 59.625 38.462 0.00 0.00 0.00 2.32
430 431 6.599244 GTGGATCAGAGTACATTGGAATTTGA 59.401 38.462 0.00 0.00 0.00 2.69
431 432 7.121168 GTGGATCAGAGTACATTGGAATTTGAA 59.879 37.037 0.00 0.00 0.00 2.69
432 433 7.835682 TGGATCAGAGTACATTGGAATTTGAAT 59.164 33.333 0.00 0.00 0.00 2.57
433 434 8.689972 GGATCAGAGTACATTGGAATTTGAATT 58.310 33.333 0.00 0.00 0.00 2.17
441 442 9.061610 GTACATTGGAATTTGAATTTACTGACG 57.938 33.333 0.00 0.00 0.00 4.35
442 443 7.090173 ACATTGGAATTTGAATTTACTGACGG 58.910 34.615 0.00 0.00 0.00 4.79
443 444 6.885952 TTGGAATTTGAATTTACTGACGGA 57.114 33.333 0.00 0.00 0.00 4.69
444 445 6.249035 TGGAATTTGAATTTACTGACGGAC 57.751 37.500 0.00 0.00 0.00 4.79
445 446 5.765677 TGGAATTTGAATTTACTGACGGACA 59.234 36.000 0.00 0.00 0.00 4.02
446 447 6.432783 TGGAATTTGAATTTACTGACGGACAT 59.567 34.615 0.00 0.00 0.00 3.06
447 448 7.608376 TGGAATTTGAATTTACTGACGGACATA 59.392 33.333 0.00 0.00 0.00 2.29
448 449 8.621286 GGAATTTGAATTTACTGACGGACATAT 58.379 33.333 0.00 0.00 0.00 1.78
453 454 9.923143 TTGAATTTACTGACGGACATATATAGG 57.077 33.333 0.00 0.00 0.00 2.57
454 455 9.304335 TGAATTTACTGACGGACATATATAGGA 57.696 33.333 0.54 0.00 0.00 2.94
463 464 9.350951 TGACGGACATATATAGGATATACTTGG 57.649 37.037 0.54 0.00 0.00 3.61
464 465 9.570468 GACGGACATATATAGGATATACTTGGA 57.430 37.037 0.54 0.00 0.00 3.53
469 470 8.807118 ACATATATAGGATATACTTGGATGGCG 58.193 37.037 0.54 0.00 0.00 5.69
470 471 6.672266 ATATAGGATATACTTGGATGGCGG 57.328 41.667 0.00 0.00 0.00 6.13
471 472 1.279271 AGGATATACTTGGATGGCGGC 59.721 52.381 0.00 0.00 0.00 6.53
472 473 1.679032 GGATATACTTGGATGGCGGCC 60.679 57.143 13.32 13.32 0.00 6.13
473 474 1.279271 GATATACTTGGATGGCGGCCT 59.721 52.381 21.46 5.57 0.00 5.19
474 475 0.685097 TATACTTGGATGGCGGCCTC 59.315 55.000 21.46 14.41 0.00 4.70
475 476 2.056906 ATACTTGGATGGCGGCCTCC 62.057 60.000 23.77 23.77 0.00 4.30
476 477 4.883354 CTTGGATGGCGGCCTCCC 62.883 72.222 26.58 22.24 0.00 4.30
486 487 2.124151 GGCCTCCCGCATTCATGT 60.124 61.111 0.00 0.00 40.31 3.21
487 488 2.189499 GGCCTCCCGCATTCATGTC 61.189 63.158 0.00 0.00 40.31 3.06
488 489 2.189499 GCCTCCCGCATTCATGTCC 61.189 63.158 0.00 0.00 37.47 4.02
489 490 1.889105 CCTCCCGCATTCATGTCCG 60.889 63.158 0.00 0.00 0.00 4.79
490 491 2.513666 TCCCGCATTCATGTCCGC 60.514 61.111 0.00 0.00 0.00 5.54
491 492 3.940640 CCCGCATTCATGTCCGCG 61.941 66.667 15.19 15.19 46.96 6.46
493 494 2.889988 CGCATTCATGTCCGCGGA 60.890 61.111 27.28 27.28 43.84 5.54
494 495 2.709475 GCATTCATGTCCGCGGAC 59.291 61.111 43.88 43.88 44.77 4.79
505 506 2.433491 CGCGGACGGATGTGGAAA 60.433 61.111 0.00 0.00 34.97 3.13
506 507 1.813753 CGCGGACGGATGTGGAAAT 60.814 57.895 0.00 0.00 34.97 2.17
507 508 1.366111 CGCGGACGGATGTGGAAATT 61.366 55.000 0.00 0.00 34.97 1.82
508 509 0.808755 GCGGACGGATGTGGAAATTT 59.191 50.000 0.00 0.00 0.00 1.82
509 510 1.467374 GCGGACGGATGTGGAAATTTG 60.467 52.381 0.00 0.00 0.00 2.32
510 511 1.810151 CGGACGGATGTGGAAATTTGT 59.190 47.619 0.00 0.00 0.00 2.83
511 512 2.414029 CGGACGGATGTGGAAATTTGTG 60.414 50.000 0.00 0.00 0.00 3.33
512 513 2.556622 GGACGGATGTGGAAATTTGTGT 59.443 45.455 0.00 0.00 0.00 3.72
513 514 3.564511 GACGGATGTGGAAATTTGTGTG 58.435 45.455 0.00 0.00 0.00 3.82
514 515 2.955660 ACGGATGTGGAAATTTGTGTGT 59.044 40.909 0.00 0.00 0.00 3.72
515 516 3.383185 ACGGATGTGGAAATTTGTGTGTT 59.617 39.130 0.00 0.00 0.00 3.32
516 517 4.580995 ACGGATGTGGAAATTTGTGTGTTA 59.419 37.500 0.00 0.00 0.00 2.41
517 518 4.915085 CGGATGTGGAAATTTGTGTGTTAC 59.085 41.667 0.00 0.00 0.00 2.50
518 519 5.227152 GGATGTGGAAATTTGTGTGTTACC 58.773 41.667 0.00 0.00 0.00 2.85
519 520 4.294416 TGTGGAAATTTGTGTGTTACCG 57.706 40.909 0.00 0.00 0.00 4.02
520 521 3.695060 TGTGGAAATTTGTGTGTTACCGT 59.305 39.130 0.00 0.00 0.00 4.83
521 522 4.158025 TGTGGAAATTTGTGTGTTACCGTT 59.842 37.500 0.00 0.00 0.00 4.44
522 523 5.356190 TGTGGAAATTTGTGTGTTACCGTTA 59.644 36.000 0.00 0.00 0.00 3.18
523 524 5.910723 GTGGAAATTTGTGTGTTACCGTTAG 59.089 40.000 0.00 0.00 0.00 2.34
524 525 5.821470 TGGAAATTTGTGTGTTACCGTTAGA 59.179 36.000 0.00 0.00 0.00 2.10
525 526 6.017770 TGGAAATTTGTGTGTTACCGTTAGAG 60.018 38.462 0.00 0.00 0.00 2.43
526 527 6.203338 GGAAATTTGTGTGTTACCGTTAGAGA 59.797 38.462 0.00 0.00 0.00 3.10
527 528 7.094933 GGAAATTTGTGTGTTACCGTTAGAGAT 60.095 37.037 0.00 0.00 0.00 2.75
528 529 8.836268 AAATTTGTGTGTTACCGTTAGAGATA 57.164 30.769 0.00 0.00 0.00 1.98
529 530 7.823149 ATTTGTGTGTTACCGTTAGAGATAC 57.177 36.000 0.00 0.00 0.00 2.24
530 531 5.314923 TGTGTGTTACCGTTAGAGATACC 57.685 43.478 0.00 0.00 0.00 2.73
531 532 4.158394 TGTGTGTTACCGTTAGAGATACCC 59.842 45.833 0.00 0.00 0.00 3.69
536 537 5.829924 TGTTACCGTTAGAGATACCCTAAGG 59.170 44.000 0.00 0.00 40.04 2.69
544 545 7.575343 CGTTAGAGATACCCTAAGGTCTAATGC 60.575 44.444 0.72 0.00 46.45 3.56
552 553 5.357032 ACCCTAAGGTCTAATGCATTTTTCG 59.643 40.000 18.75 4.45 46.45 3.46
564 565 7.887996 AATGCATTTTTCGAGATTGCTTTTA 57.112 28.000 5.99 1.25 34.47 1.52
569 570 7.501515 CATTTTTCGAGATTGCTTTTAACCAC 58.498 34.615 0.00 0.00 0.00 4.16
579 584 2.161012 GCTTTTAACCACGGGTTAGAGC 59.839 50.000 22.20 22.20 46.91 4.09
588 593 3.312421 CCACGGGTTAGAGCAACAATATG 59.688 47.826 0.00 0.00 39.04 1.78
612 617 7.167535 TGTGGCATACATGTTACATATAGCAT 58.832 34.615 2.30 0.00 32.86 3.79
619 624 9.938280 ATACATGTTACATATAGCATTACCGTT 57.062 29.630 2.30 0.00 30.42 4.44
836 854 2.978010 GGTGCGGTGGTTGGTGAG 60.978 66.667 0.00 0.00 0.00 3.51
876 894 2.271944 AGTGGTTGGTAAAGGCAGAC 57.728 50.000 0.00 0.00 0.00 3.51
988 1022 2.757917 GCTCCGGAGAGGCAGAGT 60.758 66.667 35.69 0.00 40.79 3.24
999 1033 0.036022 AGGCAGAGTCAGAGGCAAAC 59.964 55.000 0.00 0.00 0.00 2.93
1056 1090 1.068083 CGAGGAGGCGTGCATGTAT 59.932 57.895 7.93 0.00 0.00 2.29
1119 1153 3.665675 GAACGCCATCGAGCTGGGT 62.666 63.158 7.16 1.78 39.41 4.51
1347 1381 1.057851 AGTTCCTCACCCCCAACGAA 61.058 55.000 0.00 0.00 0.00 3.85
1533 1586 7.402054 ACTCTCTCTTTAACATCTCTCTCTCA 58.598 38.462 0.00 0.00 0.00 3.27
1534 1587 8.055181 ACTCTCTCTTTAACATCTCTCTCTCAT 58.945 37.037 0.00 0.00 0.00 2.90
1651 2028 5.399858 CGAAGAGTTCATCTAGAAACCGAA 58.600 41.667 0.00 0.00 37.23 4.30
1665 2042 8.127327 TCTAGAAACCGAAAGATTACGTATCAG 58.873 37.037 0.00 0.00 35.59 2.90
1741 2118 5.471456 TGACTTTTCTTGCCTGAGATTTCTC 59.529 40.000 0.46 0.46 43.15 2.87
1760 2139 8.942338 ATTTCTCGCAGTAATAATAGTCAACA 57.058 30.769 0.00 0.00 0.00 3.33
1880 3370 0.676782 AAGCCGGTGATACAGCAACC 60.677 55.000 1.90 0.00 0.00 3.77
1911 3401 5.299279 TCTCTGTTTCAAAAGATGTGGGAAC 59.701 40.000 0.00 0.00 0.00 3.62
2707 4239 4.142403 TGCTGAATATGTACTTTGGCTTGC 60.142 41.667 0.00 0.00 0.00 4.01
2737 4272 8.110860 TCCTCTGTTTTCCTAATTTTGTCATC 57.889 34.615 0.00 0.00 0.00 2.92
2760 4305 6.522946 TCCTAGCTCTGAATCATTCTGAATG 58.477 40.000 21.51 21.51 37.22 2.67
2773 4318 2.426522 TCTGAATGCTACTGGTTGTGC 58.573 47.619 0.00 0.00 0.00 4.57
2867 4427 6.564709 TGACATGATTTCTCTCCTTTGTTG 57.435 37.500 0.00 0.00 0.00 3.33
2947 4512 8.480501 ATCTTCAATAGATGGTCCAAAATTTGG 58.519 33.333 18.21 18.21 45.86 3.28
3006 4571 6.959639 AAAAAGCTCAACTCCAACAGATAA 57.040 33.333 0.00 0.00 0.00 1.75
3026 4604 8.426489 CAGATAATCCAAATTGATGGTCCAAAT 58.574 33.333 0.00 0.00 41.46 2.32
3027 4605 8.995577 AGATAATCCAAATTGATGGTCCAAATT 58.004 29.630 0.00 0.00 41.46 1.82
3028 4606 9.617523 GATAATCCAAATTGATGGTCCAAATTT 57.382 29.630 8.03 8.03 41.46 1.82
3041 4619 5.070981 TGGTCCAAATTTGCAACTCCAATAA 59.929 36.000 12.92 0.00 0.00 1.40
3097 4675 9.701098 AAAACGACATACTACTAGTTCATTCAA 57.299 29.630 0.00 0.00 0.00 2.69
3098 4676 8.684973 AACGACATACTACTAGTTCATTCAAC 57.315 34.615 0.00 0.00 34.86 3.18
3099 4677 7.823665 ACGACATACTACTAGTTCATTCAACA 58.176 34.615 0.00 0.00 37.48 3.33
3100 4678 8.467598 ACGACATACTACTAGTTCATTCAACAT 58.532 33.333 0.00 0.00 37.48 2.71
3101 4679 9.946165 CGACATACTACTAGTTCATTCAACATA 57.054 33.333 0.00 0.00 37.48 2.29
3110 4688 9.337396 ACTAGTTCATTCAACATAGTTCAAACA 57.663 29.630 0.00 0.00 37.48 2.83
3113 4691 8.849168 AGTTCATTCAACATAGTTCAAACATCA 58.151 29.630 0.00 0.00 37.48 3.07
3114 4692 9.462174 GTTCATTCAACATAGTTCAAACATCAA 57.538 29.630 0.00 0.00 34.76 2.57
3332 4957 1.380650 TCGATGGGGATCACCGTCA 60.381 57.895 31.10 17.87 45.03 4.35
3362 4988 1.304217 TCGTCCTCCTTCTTCGGCT 60.304 57.895 0.00 0.00 0.00 5.52
3457 5084 2.954684 AAACCTCGCCATCGCCTCA 61.955 57.895 0.00 0.00 35.26 3.86
3508 5144 2.996621 CGATGGCTTCTTCGTCTTCTTT 59.003 45.455 0.00 0.00 34.60 2.52
3509 5145 3.433615 CGATGGCTTCTTCGTCTTCTTTT 59.566 43.478 0.00 0.00 34.60 2.27
3510 5146 4.625742 CGATGGCTTCTTCGTCTTCTTTTA 59.374 41.667 0.00 0.00 34.60 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.202409 CCTTCCTCTCCTTGATTATGGTCC 60.202 50.000 0.00 0.00 0.00 4.46
5 6 4.656112 TCCTTCCTCTCCTTGATTATGGTC 59.344 45.833 0.00 0.00 0.00 4.02
10 11 2.431057 GCGTCCTTCCTCTCCTTGATTA 59.569 50.000 0.00 0.00 0.00 1.75
11 12 1.208293 GCGTCCTTCCTCTCCTTGATT 59.792 52.381 0.00 0.00 0.00 2.57
12 13 0.827368 GCGTCCTTCCTCTCCTTGAT 59.173 55.000 0.00 0.00 0.00 2.57
13 14 1.595993 CGCGTCCTTCCTCTCCTTGA 61.596 60.000 0.00 0.00 0.00 3.02
14 15 1.153745 CGCGTCCTTCCTCTCCTTG 60.154 63.158 0.00 0.00 0.00 3.61
15 16 3.007973 GCGCGTCCTTCCTCTCCTT 62.008 63.158 8.43 0.00 0.00 3.36
16 17 3.453679 GCGCGTCCTTCCTCTCCT 61.454 66.667 8.43 0.00 0.00 3.69
17 18 3.418744 GAGCGCGTCCTTCCTCTCC 62.419 68.421 8.43 0.00 0.00 3.71
18 19 2.103340 GAGCGCGTCCTTCCTCTC 59.897 66.667 8.43 0.00 0.00 3.20
19 20 3.816524 CGAGCGCGTCCTTCCTCT 61.817 66.667 8.43 0.00 0.00 3.69
20 21 3.743091 CTCGAGCGCGTCCTTCCTC 62.743 68.421 10.30 3.28 38.98 3.71
21 22 3.816524 CTCGAGCGCGTCCTTCCT 61.817 66.667 10.30 0.00 38.98 3.36
22 23 4.856607 CCTCGAGCGCGTCCTTCC 62.857 72.222 10.30 0.00 38.98 3.46
23 24 2.814183 TTTCCTCGAGCGCGTCCTTC 62.814 60.000 10.30 0.00 38.98 3.46
24 25 2.430382 TTTTCCTCGAGCGCGTCCTT 62.430 55.000 10.30 0.00 38.98 3.36
25 26 2.820767 CTTTTCCTCGAGCGCGTCCT 62.821 60.000 10.30 0.00 38.98 3.85
26 27 2.431942 TTTTCCTCGAGCGCGTCC 60.432 61.111 10.30 0.00 38.98 4.79
27 28 1.406970 CTCTTTTCCTCGAGCGCGTC 61.407 60.000 10.30 3.06 38.98 5.19
28 29 1.444553 CTCTTTTCCTCGAGCGCGT 60.445 57.895 10.30 0.00 38.98 6.01
69 70 1.291132 GTTAGCATCTTGGCGTCCTC 58.709 55.000 0.00 0.00 39.27 3.71
74 75 1.737838 TCAAGGTTAGCATCTTGGCG 58.262 50.000 0.00 0.00 40.35 5.69
84 85 5.120830 CCAAAGAGTCGACATTCAAGGTTAG 59.879 44.000 19.50 0.00 0.00 2.34
86 87 3.815401 CCAAAGAGTCGACATTCAAGGTT 59.185 43.478 19.50 0.00 0.00 3.50
90 91 3.436704 GCATCCAAAGAGTCGACATTCAA 59.563 43.478 19.50 2.23 0.00 2.69
96 97 0.108804 TCGGCATCCAAAGAGTCGAC 60.109 55.000 7.70 7.70 0.00 4.20
119 120 2.609459 GACGGATTGCACGATCATTCTT 59.391 45.455 1.86 0.00 34.93 2.52
125 126 2.871427 GCGGACGGATTGCACGATC 61.871 63.158 1.86 0.00 34.93 3.69
129 130 2.171725 GGTAGCGGACGGATTGCAC 61.172 63.158 0.00 0.00 0.00 4.57
137 138 1.133598 TGTAACATCTGGTAGCGGACG 59.866 52.381 5.39 0.00 0.00 4.79
155 156 4.153117 GCAAACTCATCTTTCTGTCGATGT 59.847 41.667 0.00 0.00 38.47 3.06
156 157 4.645956 GCAAACTCATCTTTCTGTCGATG 58.354 43.478 0.00 0.00 38.64 3.84
158 159 2.731451 CGCAAACTCATCTTTCTGTCGA 59.269 45.455 0.00 0.00 0.00 4.20
161 162 1.537202 GCCGCAAACTCATCTTTCTGT 59.463 47.619 0.00 0.00 0.00 3.41
165 166 1.875963 CCGCCGCAAACTCATCTTT 59.124 52.632 0.00 0.00 0.00 2.52
184 185 2.331805 CCGCGTCCTCATAGTCCG 59.668 66.667 4.92 0.00 0.00 4.79
188 189 1.360551 CTCCACCGCGTCCTCATAG 59.639 63.158 4.92 0.00 0.00 2.23
189 190 2.125326 CCTCCACCGCGTCCTCATA 61.125 63.158 4.92 0.00 0.00 2.15
190 191 3.461773 CCTCCACCGCGTCCTCAT 61.462 66.667 4.92 0.00 0.00 2.90
224 225 3.740128 ATCATGGAGGTGCGCCGTC 62.740 63.158 11.42 8.84 40.50 4.79
225 226 3.740128 GATCATGGAGGTGCGCCGT 62.740 63.158 11.42 0.00 40.50 5.68
226 227 2.969238 GATCATGGAGGTGCGCCG 60.969 66.667 11.42 0.00 40.50 6.46
227 228 2.969238 CGATCATGGAGGTGCGCC 60.969 66.667 8.71 8.71 0.00 6.53
228 229 2.969238 CCGATCATGGAGGTGCGC 60.969 66.667 0.00 0.00 0.00 6.09
229 230 2.280389 CCCGATCATGGAGGTGCG 60.280 66.667 0.00 0.00 0.00 5.34
230 231 2.111878 CCCCGATCATGGAGGTGC 59.888 66.667 0.00 0.00 0.00 5.01
231 232 1.750930 CTCCCCGATCATGGAGGTG 59.249 63.158 16.41 2.28 43.69 4.00
232 233 2.143419 GCTCCCCGATCATGGAGGT 61.143 63.158 22.53 0.00 46.79 3.85
233 234 2.109517 CTGCTCCCCGATCATGGAGG 62.110 65.000 22.53 8.71 46.79 4.30
235 236 2.811514 GCTGCTCCCCGATCATGGA 61.812 63.158 0.00 0.24 0.00 3.41
236 237 2.281345 GCTGCTCCCCGATCATGG 60.281 66.667 0.00 0.00 0.00 3.66
237 238 1.597302 CAGCTGCTCCCCGATCATG 60.597 63.158 0.00 0.00 0.00 3.07
238 239 2.815945 CCAGCTGCTCCCCGATCAT 61.816 63.158 8.66 0.00 0.00 2.45
239 240 3.473647 CCAGCTGCTCCCCGATCA 61.474 66.667 8.66 0.00 0.00 2.92
240 241 4.925861 GCCAGCTGCTCCCCGATC 62.926 72.222 8.66 0.00 36.87 3.69
249 250 1.980772 AACAATCCCAGCCAGCTGC 60.981 57.895 14.26 3.91 42.35 5.25
250 251 0.609957 TCAACAATCCCAGCCAGCTG 60.610 55.000 12.78 12.78 43.26 4.24
251 252 0.333993 ATCAACAATCCCAGCCAGCT 59.666 50.000 0.00 0.00 0.00 4.24
252 253 0.743097 GATCAACAATCCCAGCCAGC 59.257 55.000 0.00 0.00 0.00 4.85
261 262 1.728490 GCCCTGCCGGATCAACAATC 61.728 60.000 5.05 0.00 0.00 2.67
262 263 1.754234 GCCCTGCCGGATCAACAAT 60.754 57.895 5.05 0.00 0.00 2.71
263 264 2.361104 GCCCTGCCGGATCAACAA 60.361 61.111 5.05 0.00 0.00 2.83
264 265 3.626996 CTGCCCTGCCGGATCAACA 62.627 63.158 5.05 0.00 0.00 3.33
265 266 2.819984 TTCTGCCCTGCCGGATCAAC 62.820 60.000 5.05 0.00 0.00 3.18
266 267 2.135903 TTTCTGCCCTGCCGGATCAA 62.136 55.000 5.05 0.00 0.00 2.57
267 268 1.925285 ATTTCTGCCCTGCCGGATCA 61.925 55.000 5.05 0.00 0.00 2.92
268 269 1.152881 ATTTCTGCCCTGCCGGATC 60.153 57.895 5.05 0.00 0.00 3.36
269 270 1.454479 CATTTCTGCCCTGCCGGAT 60.454 57.895 5.05 0.00 0.00 4.18
270 271 2.045045 CATTTCTGCCCTGCCGGA 60.045 61.111 5.05 0.00 0.00 5.14
271 272 3.830192 GCATTTCTGCCCTGCCGG 61.830 66.667 0.00 0.00 42.88 6.13
278 279 2.945440 TGGTAGTCCATGCATTTCTGCC 60.945 50.000 16.85 16.85 42.41 4.85
279 280 2.357009 CTGGTAGTCCATGCATTTCTGC 59.643 50.000 0.00 0.00 43.43 4.26
280 281 3.624861 GTCTGGTAGTCCATGCATTTCTG 59.375 47.826 0.00 0.00 43.43 3.02
281 282 3.521126 AGTCTGGTAGTCCATGCATTTCT 59.479 43.478 0.00 0.00 43.43 2.52
282 283 3.624861 CAGTCTGGTAGTCCATGCATTTC 59.375 47.826 0.00 0.00 43.43 2.17
283 284 3.264193 TCAGTCTGGTAGTCCATGCATTT 59.736 43.478 0.00 0.00 43.43 2.32
284 285 2.840038 TCAGTCTGGTAGTCCATGCATT 59.160 45.455 0.00 0.00 43.43 3.56
285 286 2.470990 TCAGTCTGGTAGTCCATGCAT 58.529 47.619 0.00 0.00 43.43 3.96
286 287 1.937191 TCAGTCTGGTAGTCCATGCA 58.063 50.000 0.00 0.00 43.43 3.96
287 288 4.881019 ATATCAGTCTGGTAGTCCATGC 57.119 45.455 0.00 0.00 43.43 4.06
288 289 6.662865 AGAATATCAGTCTGGTAGTCCATG 57.337 41.667 15.29 0.00 43.43 3.66
289 290 7.682787 AAAGAATATCAGTCTGGTAGTCCAT 57.317 36.000 15.29 4.28 43.43 3.41
290 291 7.331026 CAAAAGAATATCAGTCTGGTAGTCCA 58.669 38.462 15.29 0.00 42.05 4.02
291 292 6.763610 CCAAAAGAATATCAGTCTGGTAGTCC 59.236 42.308 15.29 0.71 29.00 3.85
292 293 7.556844 TCCAAAAGAATATCAGTCTGGTAGTC 58.443 38.462 11.80 11.80 28.92 2.59
293 294 7.496346 TCCAAAAGAATATCAGTCTGGTAGT 57.504 36.000 0.00 0.00 0.00 2.73
294 295 8.970859 AATCCAAAAGAATATCAGTCTGGTAG 57.029 34.615 0.00 0.00 0.00 3.18
295 296 9.177608 CAAATCCAAAAGAATATCAGTCTGGTA 57.822 33.333 0.00 0.00 0.00 3.25
296 297 7.123247 CCAAATCCAAAAGAATATCAGTCTGGT 59.877 37.037 0.00 0.00 0.00 4.00
297 298 7.486647 CCAAATCCAAAAGAATATCAGTCTGG 58.513 38.462 0.00 0.00 0.00 3.86
298 299 6.976925 GCCAAATCCAAAAGAATATCAGTCTG 59.023 38.462 0.00 0.00 0.00 3.51
299 300 6.097412 GGCCAAATCCAAAAGAATATCAGTCT 59.903 38.462 0.00 0.00 0.00 3.24
300 301 6.127366 TGGCCAAATCCAAAAGAATATCAGTC 60.127 38.462 0.61 0.00 32.18 3.51
301 302 5.721000 TGGCCAAATCCAAAAGAATATCAGT 59.279 36.000 0.61 0.00 32.18 3.41
302 303 6.224665 TGGCCAAATCCAAAAGAATATCAG 57.775 37.500 0.61 0.00 32.18 2.90
303 304 6.156602 ACATGGCCAAATCCAAAAGAATATCA 59.843 34.615 10.96 0.00 39.96 2.15
304 305 6.585416 ACATGGCCAAATCCAAAAGAATATC 58.415 36.000 10.96 0.00 39.96 1.63
305 306 6.564557 ACATGGCCAAATCCAAAAGAATAT 57.435 33.333 10.96 0.00 39.96 1.28
306 307 7.487822 TTACATGGCCAAATCCAAAAGAATA 57.512 32.000 10.96 0.00 39.96 1.75
307 308 4.914177 ACATGGCCAAATCCAAAAGAAT 57.086 36.364 10.96 0.00 39.96 2.40
308 309 5.815233 TTACATGGCCAAATCCAAAAGAA 57.185 34.783 10.96 0.00 39.96 2.52
309 310 5.815233 TTTACATGGCCAAATCCAAAAGA 57.185 34.783 10.96 0.00 39.96 2.52
310 311 6.486320 AGTTTTTACATGGCCAAATCCAAAAG 59.514 34.615 10.96 0.00 39.96 2.27
311 312 6.360618 AGTTTTTACATGGCCAAATCCAAAA 58.639 32.000 10.96 9.22 39.96 2.44
312 313 5.934781 AGTTTTTACATGGCCAAATCCAAA 58.065 33.333 10.96 3.93 39.96 3.28
313 314 5.559148 AGTTTTTACATGGCCAAATCCAA 57.441 34.783 10.96 0.00 39.96 3.53
314 315 6.672266 TTAGTTTTTACATGGCCAAATCCA 57.328 33.333 10.96 0.00 40.97 3.41
315 316 6.931840 TGTTTAGTTTTTACATGGCCAAATCC 59.068 34.615 10.96 0.00 0.00 3.01
316 317 7.954788 TGTTTAGTTTTTACATGGCCAAATC 57.045 32.000 10.96 0.00 0.00 2.17
332 333 9.596308 ACCCAAAAGAGGTAAATATGTTTAGTT 57.404 29.630 0.00 0.00 35.24 2.24
333 334 9.596308 AACCCAAAAGAGGTAAATATGTTTAGT 57.404 29.630 0.00 0.00 36.27 2.24
335 336 9.816787 AGAACCCAAAAGAGGTAAATATGTTTA 57.183 29.630 0.00 0.00 36.27 2.01
336 337 8.585018 CAGAACCCAAAAGAGGTAAATATGTTT 58.415 33.333 0.00 0.00 36.27 2.83
337 338 7.947890 TCAGAACCCAAAAGAGGTAAATATGTT 59.052 33.333 0.00 0.00 36.27 2.71
338 339 7.466804 TCAGAACCCAAAAGAGGTAAATATGT 58.533 34.615 0.00 0.00 36.27 2.29
339 340 7.938140 TCAGAACCCAAAAGAGGTAAATATG 57.062 36.000 0.00 0.00 36.27 1.78
340 341 7.499232 CGATCAGAACCCAAAAGAGGTAAATAT 59.501 37.037 0.00 0.00 36.27 1.28
341 342 6.821665 CGATCAGAACCCAAAAGAGGTAAATA 59.178 38.462 0.00 0.00 36.27 1.40
342 343 5.648092 CGATCAGAACCCAAAAGAGGTAAAT 59.352 40.000 0.00 0.00 36.27 1.40
343 344 5.001232 CGATCAGAACCCAAAAGAGGTAAA 58.999 41.667 0.00 0.00 36.27 2.01
344 345 4.041198 ACGATCAGAACCCAAAAGAGGTAA 59.959 41.667 0.00 0.00 36.27 2.85
345 346 3.581332 ACGATCAGAACCCAAAAGAGGTA 59.419 43.478 0.00 0.00 36.27 3.08
346 347 2.372172 ACGATCAGAACCCAAAAGAGGT 59.628 45.455 0.00 0.00 40.14 3.85
347 348 2.744202 CACGATCAGAACCCAAAAGAGG 59.256 50.000 0.00 0.00 0.00 3.69
348 349 2.160417 GCACGATCAGAACCCAAAAGAG 59.840 50.000 0.00 0.00 0.00 2.85
349 350 2.151202 GCACGATCAGAACCCAAAAGA 58.849 47.619 0.00 0.00 0.00 2.52
350 351 1.879380 TGCACGATCAGAACCCAAAAG 59.121 47.619 0.00 0.00 0.00 2.27
351 352 1.974265 TGCACGATCAGAACCCAAAA 58.026 45.000 0.00 0.00 0.00 2.44
352 353 1.811965 CATGCACGATCAGAACCCAAA 59.188 47.619 0.00 0.00 0.00 3.28
353 354 1.452110 CATGCACGATCAGAACCCAA 58.548 50.000 0.00 0.00 0.00 4.12
354 355 1.026182 GCATGCACGATCAGAACCCA 61.026 55.000 14.21 0.00 0.00 4.51
355 356 1.723870 GCATGCACGATCAGAACCC 59.276 57.895 14.21 0.00 0.00 4.11
356 357 1.083806 TCGCATGCACGATCAGAACC 61.084 55.000 19.57 0.00 37.09 3.62
357 358 2.372919 TCGCATGCACGATCAGAAC 58.627 52.632 19.57 0.00 37.09 3.01
358 359 4.908790 TCGCATGCACGATCAGAA 57.091 50.000 19.57 0.00 37.09 3.02
365 366 3.976375 CGTCGGATCGCATGCACG 61.976 66.667 19.57 14.77 0.00 5.34
366 367 2.452813 AACGTCGGATCGCATGCAC 61.453 57.895 19.57 5.99 0.00 4.57
367 368 2.125713 AACGTCGGATCGCATGCA 60.126 55.556 19.57 5.34 0.00 3.96
368 369 2.321060 CAACGTCGGATCGCATGC 59.679 61.111 7.91 7.91 0.00 4.06
369 370 1.809619 ACCAACGTCGGATCGCATG 60.810 57.895 0.00 0.00 0.00 4.06
370 371 1.809619 CACCAACGTCGGATCGCAT 60.810 57.895 0.00 0.00 0.00 4.73
371 372 2.431771 CACCAACGTCGGATCGCA 60.432 61.111 0.00 0.00 0.00 5.10
372 373 2.431942 ACACCAACGTCGGATCGC 60.432 61.111 0.00 0.00 0.00 4.58
373 374 0.457853 ATCACACCAACGTCGGATCG 60.458 55.000 0.00 0.00 0.00 3.69
374 375 1.278238 GATCACACCAACGTCGGATC 58.722 55.000 0.00 0.00 0.00 3.36
375 376 0.108329 GGATCACACCAACGTCGGAT 60.108 55.000 0.00 0.00 0.00 4.18
376 377 1.290955 GGATCACACCAACGTCGGA 59.709 57.895 0.00 0.00 0.00 4.55
377 378 2.092291 CGGATCACACCAACGTCGG 61.092 63.158 0.00 0.00 0.00 4.79
378 379 2.092291 CCGGATCACACCAACGTCG 61.092 63.158 0.00 0.00 0.00 5.12
379 380 2.388232 GCCGGATCACACCAACGTC 61.388 63.158 5.05 0.00 0.00 4.34
380 381 2.358247 GCCGGATCACACCAACGT 60.358 61.111 5.05 0.00 0.00 3.99
381 382 3.487202 CGCCGGATCACACCAACG 61.487 66.667 5.05 0.00 0.00 4.10
382 383 3.799755 GCGCCGGATCACACCAAC 61.800 66.667 5.05 0.00 0.00 3.77
396 397 3.857854 CTGATCCACACAGCGCGC 61.858 66.667 26.66 26.66 0.00 6.86
397 398 2.125952 TCTGATCCACACAGCGCG 60.126 61.111 0.00 0.00 35.61 6.86
398 399 0.173481 TACTCTGATCCACACAGCGC 59.827 55.000 0.00 0.00 35.61 5.92
399 400 1.202348 TGTACTCTGATCCACACAGCG 59.798 52.381 0.00 0.00 35.61 5.18
400 401 3.533606 ATGTACTCTGATCCACACAGC 57.466 47.619 0.00 0.00 35.61 4.40
401 402 4.081476 TCCAATGTACTCTGATCCACACAG 60.081 45.833 0.00 0.00 36.80 3.66
402 403 3.837731 TCCAATGTACTCTGATCCACACA 59.162 43.478 0.00 0.00 0.00 3.72
403 404 4.471904 TCCAATGTACTCTGATCCACAC 57.528 45.455 0.00 0.00 0.00 3.82
404 405 5.698741 ATTCCAATGTACTCTGATCCACA 57.301 39.130 0.00 0.00 0.00 4.17
405 406 6.599244 TCAAATTCCAATGTACTCTGATCCAC 59.401 38.462 0.00 0.00 0.00 4.02
406 407 6.720309 TCAAATTCCAATGTACTCTGATCCA 58.280 36.000 0.00 0.00 0.00 3.41
407 408 7.630242 TTCAAATTCCAATGTACTCTGATCC 57.370 36.000 0.00 0.00 0.00 3.36
415 416 9.061610 CGTCAGTAAATTCAAATTCCAATGTAC 57.938 33.333 3.08 3.08 0.00 2.90
416 417 8.240682 CCGTCAGTAAATTCAAATTCCAATGTA 58.759 33.333 0.00 0.00 0.00 2.29
417 418 7.040062 TCCGTCAGTAAATTCAAATTCCAATGT 60.040 33.333 0.00 0.00 0.00 2.71
418 419 7.273381 GTCCGTCAGTAAATTCAAATTCCAATG 59.727 37.037 0.00 0.00 0.00 2.82
419 420 7.040062 TGTCCGTCAGTAAATTCAAATTCCAAT 60.040 33.333 0.00 0.00 0.00 3.16
420 421 6.263392 TGTCCGTCAGTAAATTCAAATTCCAA 59.737 34.615 0.00 0.00 0.00 3.53
421 422 5.765677 TGTCCGTCAGTAAATTCAAATTCCA 59.234 36.000 0.00 0.00 0.00 3.53
422 423 6.249035 TGTCCGTCAGTAAATTCAAATTCC 57.751 37.500 0.00 0.00 0.00 3.01
427 428 9.923143 CCTATATATGTCCGTCAGTAAATTCAA 57.077 33.333 0.00 0.00 0.00 2.69
428 429 9.304335 TCCTATATATGTCCGTCAGTAAATTCA 57.696 33.333 0.00 0.00 0.00 2.57
437 438 9.350951 CCAAGTATATCCTATATATGTCCGTCA 57.649 37.037 0.00 0.00 0.00 4.35
438 439 9.570468 TCCAAGTATATCCTATATATGTCCGTC 57.430 37.037 0.00 0.00 0.00 4.79
443 444 8.807118 CGCCATCCAAGTATATCCTATATATGT 58.193 37.037 0.00 0.00 0.00 2.29
444 445 8.253810 CCGCCATCCAAGTATATCCTATATATG 58.746 40.741 0.00 0.00 0.00 1.78
445 446 7.093289 GCCGCCATCCAAGTATATCCTATATAT 60.093 40.741 0.00 0.00 0.00 0.86
446 447 6.210784 GCCGCCATCCAAGTATATCCTATATA 59.789 42.308 0.00 0.00 0.00 0.86
447 448 5.012148 GCCGCCATCCAAGTATATCCTATAT 59.988 44.000 0.00 0.00 0.00 0.86
448 449 4.344102 GCCGCCATCCAAGTATATCCTATA 59.656 45.833 0.00 0.00 0.00 1.31
449 450 3.134804 GCCGCCATCCAAGTATATCCTAT 59.865 47.826 0.00 0.00 0.00 2.57
450 451 2.500098 GCCGCCATCCAAGTATATCCTA 59.500 50.000 0.00 0.00 0.00 2.94
451 452 1.279271 GCCGCCATCCAAGTATATCCT 59.721 52.381 0.00 0.00 0.00 3.24
452 453 1.679032 GGCCGCCATCCAAGTATATCC 60.679 57.143 3.91 0.00 0.00 2.59
453 454 1.279271 AGGCCGCCATCCAAGTATATC 59.721 52.381 13.15 0.00 0.00 1.63
454 455 1.279271 GAGGCCGCCATCCAAGTATAT 59.721 52.381 13.15 0.00 0.00 0.86
455 456 0.685097 GAGGCCGCCATCCAAGTATA 59.315 55.000 13.15 0.00 0.00 1.47
456 457 1.451936 GAGGCCGCCATCCAAGTAT 59.548 57.895 13.15 0.00 0.00 2.12
457 458 2.742116 GGAGGCCGCCATCCAAGTA 61.742 63.158 22.24 0.00 35.54 2.24
458 459 4.115199 GGAGGCCGCCATCCAAGT 62.115 66.667 22.24 0.00 35.54 3.16
459 460 4.883354 GGGAGGCCGCCATCCAAG 62.883 72.222 28.06 0.00 37.33 3.61
468 469 3.282157 CATGAATGCGGGAGGCCG 61.282 66.667 0.00 0.00 42.61 6.13
469 470 2.124151 ACATGAATGCGGGAGGCC 60.124 61.111 0.00 0.00 42.61 5.19
470 471 2.189499 GGACATGAATGCGGGAGGC 61.189 63.158 0.00 0.00 43.96 4.70
471 472 1.889105 CGGACATGAATGCGGGAGG 60.889 63.158 0.00 0.00 0.00 4.30
472 473 2.537560 GCGGACATGAATGCGGGAG 61.538 63.158 0.00 0.00 0.00 4.30
473 474 2.513666 GCGGACATGAATGCGGGA 60.514 61.111 0.00 0.00 0.00 5.14
474 475 3.940640 CGCGGACATGAATGCGGG 61.941 66.667 17.82 10.20 46.31 6.13
477 478 2.709475 GTCCGCGGACATGAATGC 59.291 61.111 44.88 21.66 44.02 3.56
478 479 3.005898 CGTCCGCGGACATGAATG 58.994 61.111 46.26 30.57 44.77 2.67
488 489 1.366111 AATTTCCACATCCGTCCGCG 61.366 55.000 0.00 0.00 37.95 6.46
489 490 0.808755 AAATTTCCACATCCGTCCGC 59.191 50.000 0.00 0.00 0.00 5.54
490 491 1.810151 ACAAATTTCCACATCCGTCCG 59.190 47.619 0.00 0.00 0.00 4.79
491 492 2.556622 ACACAAATTTCCACATCCGTCC 59.443 45.455 0.00 0.00 0.00 4.79
492 493 3.004315 ACACACAAATTTCCACATCCGTC 59.996 43.478 0.00 0.00 0.00 4.79
493 494 2.955660 ACACACAAATTTCCACATCCGT 59.044 40.909 0.00 0.00 0.00 4.69
494 495 3.641437 ACACACAAATTTCCACATCCG 57.359 42.857 0.00 0.00 0.00 4.18
495 496 5.227152 GGTAACACACAAATTTCCACATCC 58.773 41.667 0.00 0.00 0.00 3.51
496 497 4.915085 CGGTAACACACAAATTTCCACATC 59.085 41.667 0.00 0.00 0.00 3.06
497 498 4.339814 ACGGTAACACACAAATTTCCACAT 59.660 37.500 0.00 0.00 0.00 3.21
498 499 3.695060 ACGGTAACACACAAATTTCCACA 59.305 39.130 0.00 0.00 0.00 4.17
499 500 4.295857 ACGGTAACACACAAATTTCCAC 57.704 40.909 0.00 0.00 0.00 4.02
500 501 4.985538 AACGGTAACACACAAATTTCCA 57.014 36.364 0.00 0.00 0.00 3.53
501 502 6.203338 TCTCTAACGGTAACACACAAATTTCC 59.797 38.462 0.00 0.00 0.00 3.13
502 503 7.181143 TCTCTAACGGTAACACACAAATTTC 57.819 36.000 0.00 0.00 0.00 2.17
503 504 7.739498 ATCTCTAACGGTAACACACAAATTT 57.261 32.000 0.00 0.00 0.00 1.82
504 505 7.332678 GGTATCTCTAACGGTAACACACAAATT 59.667 37.037 0.00 0.00 0.00 1.82
505 506 6.815142 GGTATCTCTAACGGTAACACACAAAT 59.185 38.462 0.00 0.00 0.00 2.32
506 507 6.158598 GGTATCTCTAACGGTAACACACAAA 58.841 40.000 0.00 0.00 0.00 2.83
507 508 5.336690 GGGTATCTCTAACGGTAACACACAA 60.337 44.000 0.00 0.00 0.00 3.33
508 509 4.158394 GGGTATCTCTAACGGTAACACACA 59.842 45.833 0.00 0.00 0.00 3.72
509 510 4.400567 AGGGTATCTCTAACGGTAACACAC 59.599 45.833 0.00 0.00 0.00 3.82
510 511 4.603131 AGGGTATCTCTAACGGTAACACA 58.397 43.478 0.00 0.00 0.00 3.72
511 512 6.238869 CCTTAGGGTATCTCTAACGGTAACAC 60.239 46.154 0.00 0.00 0.00 3.32
512 513 5.829924 CCTTAGGGTATCTCTAACGGTAACA 59.170 44.000 0.00 0.00 0.00 2.41
513 514 5.830457 ACCTTAGGGTATCTCTAACGGTAAC 59.170 44.000 2.32 0.00 45.32 2.50
514 515 6.018433 ACCTTAGGGTATCTCTAACGGTAA 57.982 41.667 2.32 0.00 45.32 2.85
515 516 5.653255 ACCTTAGGGTATCTCTAACGGTA 57.347 43.478 2.32 0.00 45.32 4.02
516 517 4.533001 ACCTTAGGGTATCTCTAACGGT 57.467 45.455 2.32 0.00 45.32 4.83
529 530 5.588648 TCGAAAAATGCATTAGACCTTAGGG 59.411 40.000 13.39 0.00 38.88 3.53
530 531 6.538742 TCTCGAAAAATGCATTAGACCTTAGG 59.461 38.462 13.39 0.00 0.00 2.69
531 532 7.539712 TCTCGAAAAATGCATTAGACCTTAG 57.460 36.000 13.39 5.25 0.00 2.18
536 537 6.261118 AGCAATCTCGAAAAATGCATTAGAC 58.739 36.000 13.39 6.03 39.42 2.59
537 538 6.441093 AGCAATCTCGAAAAATGCATTAGA 57.559 33.333 13.39 11.67 39.42 2.10
544 545 7.501515 GTGGTTAAAAGCAATCTCGAAAAATG 58.498 34.615 0.00 0.00 38.25 2.32
552 553 2.817844 ACCCGTGGTTAAAAGCAATCTC 59.182 45.455 0.00 0.00 38.25 2.75
569 570 3.312421 CCACATATTGTTGCTCTAACCCG 59.688 47.826 0.00 0.00 38.55 5.28
579 584 7.479150 TGTAACATGTATGCCACATATTGTTG 58.521 34.615 18.93 7.64 46.47 3.33
588 593 7.615582 ATGCTATATGTAACATGTATGCCAC 57.384 36.000 0.00 0.00 0.00 5.01
595 600 9.767228 TTAACGGTAATGCTATATGTAACATGT 57.233 29.630 0.00 0.00 0.00 3.21
607 612 8.073167 TCGTATACGAATTTAACGGTAATGCTA 58.927 33.333 24.97 0.00 46.30 3.49
609 614 7.092710 TCGTATACGAATTTAACGGTAATGC 57.907 36.000 24.97 0.00 46.30 3.56
689 694 6.916440 TCAAGGTTGTCTTTGATCATTGATG 58.084 36.000 3.32 0.00 35.32 3.07
691 696 6.957920 TTCAAGGTTGTCTTTGATCATTGA 57.042 33.333 0.00 0.00 38.94 2.57
697 702 8.791327 AATTGTTTTTCAAGGTTGTCTTTGAT 57.209 26.923 0.00 0.00 38.94 2.57
703 708 6.700081 GGGTCTAATTGTTTTTCAAGGTTGTC 59.300 38.462 0.00 0.00 39.55 3.18
704 709 6.382859 AGGGTCTAATTGTTTTTCAAGGTTGT 59.617 34.615 0.00 0.00 39.55 3.32
876 894 3.230976 GGAAAAGGGTTATATGGGGCTG 58.769 50.000 0.00 0.00 0.00 4.85
988 1022 0.322816 GAGCCCATGTTTGCCTCTGA 60.323 55.000 0.00 0.00 0.00 3.27
1119 1153 1.079256 CACCAGGGTCTCCAGGAGA 59.921 63.158 15.98 15.98 41.82 3.71
1347 1381 4.148825 GCCATGGAGACGCCGTCT 62.149 66.667 21.41 21.41 46.42 4.18
1498 1551 2.593346 AAGAGAGAGTTATGCTGCCG 57.407 50.000 0.00 0.00 0.00 5.69
1499 1552 5.178797 TGTTAAAGAGAGAGTTATGCTGCC 58.821 41.667 0.00 0.00 0.00 4.85
1500 1553 6.760770 AGATGTTAAAGAGAGAGTTATGCTGC 59.239 38.462 0.00 0.00 0.00 5.25
1501 1554 8.196771 AGAGATGTTAAAGAGAGAGTTATGCTG 58.803 37.037 0.00 0.00 0.00 4.41
1502 1555 8.305046 AGAGATGTTAAAGAGAGAGTTATGCT 57.695 34.615 0.00 0.00 0.00 3.79
1503 1556 8.413229 AGAGAGATGTTAAAGAGAGAGTTATGC 58.587 37.037 0.00 0.00 0.00 3.14
1504 1557 9.950680 GAGAGAGATGTTAAAGAGAGAGTTATG 57.049 37.037 0.00 0.00 0.00 1.90
1547 1600 5.048504 TGCTGGAGCTCAATTTGTTAAAGAG 60.049 40.000 17.19 0.00 42.66 2.85
1665 2042 1.135139 TCTGAAGCTGACTGCCGTATC 59.865 52.381 0.02 0.00 44.23 2.24
1741 2118 6.656314 TGGTTGTTGACTATTATTACTGCG 57.344 37.500 0.00 0.00 0.00 5.18
1760 2139 3.035363 ACCCAAAATTCGTCCTTTGGTT 58.965 40.909 17.49 6.63 41.64 3.67
1784 2163 2.436173 AGTCCTCTAGTTAATGGGCTGC 59.564 50.000 0.00 0.00 32.75 5.25
1911 3401 8.020819 ACATACACATTTTATTCCAACAACTCG 58.979 33.333 0.00 0.00 0.00 4.18
2472 3984 2.959507 TGATCATGTCGACGTGGAAT 57.040 45.000 31.76 21.38 33.80 3.01
2659 4178 2.548875 CAGCGAGGAAGAAGAAGATGG 58.451 52.381 0.00 0.00 0.00 3.51
2707 4239 8.197439 ACAAAATTAGGAAAACAGAGGAAACAG 58.803 33.333 0.00 0.00 0.00 3.16
2760 4305 2.380410 CGACGGCACAACCAGTAGC 61.380 63.158 0.00 0.00 39.03 3.58
2773 4318 0.949397 TCGAATGGGTAGATCGACGG 59.051 55.000 0.00 0.00 40.34 4.79
2947 4512 0.248866 CACTTTTTGCGGTGGACCAC 60.249 55.000 16.86 16.86 35.14 4.16
2948 4513 2.010582 GCACTTTTTGCGGTGGACCA 62.011 55.000 0.00 0.00 42.79 4.02
2949 4514 1.299850 GCACTTTTTGCGGTGGACC 60.300 57.895 0.00 0.00 42.79 4.46
2950 4515 4.319249 GCACTTTTTGCGGTGGAC 57.681 55.556 0.00 0.00 42.79 4.02
2958 4523 4.318263 CGGAGCTTCAAAATGCACTTTTTG 60.318 41.667 16.12 16.12 44.32 2.44
3005 4570 6.151480 GCAAATTTGGACCATCAATTTGGATT 59.849 34.615 29.09 6.69 39.25 3.01
3006 4571 5.648960 GCAAATTTGGACCATCAATTTGGAT 59.351 36.000 29.09 6.96 39.25 3.41
3096 4674 9.814899 TGTTGAATTTGATGTTTGAACTATGTT 57.185 25.926 0.00 0.00 0.00 2.71
3097 4675 9.985730 ATGTTGAATTTGATGTTTGAACTATGT 57.014 25.926 0.00 0.00 0.00 2.29
3107 4685 9.814899 TGTTTGAACTATGTTGAATTTGATGTT 57.185 25.926 0.00 0.00 0.00 2.71
3108 4686 9.985730 ATGTTTGAACTATGTTGAATTTGATGT 57.014 25.926 0.00 0.00 0.00 3.06
3508 5144 4.398358 ATGAAGGAGATCACGACGAAGTAA 59.602 41.667 0.00 0.00 33.69 2.24
3509 5145 3.945921 ATGAAGGAGATCACGACGAAGTA 59.054 43.478 0.00 0.00 33.69 2.24
3510 5146 2.755655 ATGAAGGAGATCACGACGAAGT 59.244 45.455 0.00 0.00 35.89 3.01
3572 5208 3.636300 CTCAACTTCCCAGAGATCGAGAT 59.364 47.826 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.