Multiple sequence alignment - TraesCS7D01G341000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G341000 chr7D 100.000 5148 0 0 1 5148 436882203 436877056 0.000000e+00 9507.0
1 TraesCS7D01G341000 chr7D 94.455 505 23 4 1 503 585601767 585602268 0.000000e+00 773.0
2 TraesCS7D01G341000 chr7D 93.933 511 28 3 1 509 564892311 564891802 0.000000e+00 769.0
3 TraesCS7D01G341000 chr7D 88.483 547 48 12 2073 2608 7700699 7700157 0.000000e+00 647.0
4 TraesCS7D01G341000 chr7D 87.978 549 48 12 2069 2606 506896547 506897088 2.620000e-177 632.0
5 TraesCS7D01G341000 chr7D 89.552 402 28 6 1684 2072 165480796 165480396 9.950000e-137 497.0
6 TraesCS7D01G341000 chr7D 94.271 192 11 0 1683 1874 92137757 92137948 1.400000e-75 294.0
7 TraesCS7D01G341000 chr7B 91.834 1494 70 25 2896 4348 453336028 453334546 0.000000e+00 2036.0
8 TraesCS7D01G341000 chr7B 90.674 1083 53 13 510 1578 453338102 453337054 0.000000e+00 1397.0
9 TraesCS7D01G341000 chr7B 94.949 198 8 2 4340 4537 453304567 453304372 5.010000e-80 309.0
10 TraesCS7D01G341000 chr7B 92.558 215 8 1 2618 2832 453336238 453336032 8.380000e-78 302.0
11 TraesCS7D01G341000 chr7B 93.333 165 10 1 4795 4959 460329558 460329721 5.150000e-60 243.0
12 TraesCS7D01G341000 chr7B 93.293 164 10 1 4795 4958 588875584 588875746 1.850000e-59 241.0
13 TraesCS7D01G341000 chr7B 88.430 121 10 2 4605 4721 555407289 555407169 5.370000e-30 143.0
14 TraesCS7D01G341000 chr7B 83.465 127 21 0 4962 5088 555407112 555406986 9.060000e-23 119.0
15 TraesCS7D01G341000 chr7A 92.271 1242 60 15 3099 4312 485745070 485746303 0.000000e+00 1729.0
16 TraesCS7D01G341000 chr7A 90.076 1048 70 20 518 1552 485743291 485744317 0.000000e+00 1328.0
17 TraesCS7D01G341000 chr7A 85.156 384 20 8 2619 2999 485744597 485744946 4.900000e-95 359.0
18 TraesCS7D01G341000 chr7A 81.818 418 36 22 1688 2072 80566373 80566783 1.080000e-81 315.0
19 TraesCS7D01G341000 chr7A 91.908 173 13 1 4787 4959 116744886 116745057 1.850000e-59 241.0
20 TraesCS7D01G341000 chr4A 95.079 508 21 4 1 506 614137484 614137989 0.000000e+00 797.0
21 TraesCS7D01G341000 chr4A 92.500 480 35 1 2072 2550 621665668 621665189 0.000000e+00 686.0
22 TraesCS7D01G341000 chr4A 92.353 170 12 1 4795 4964 743755022 743754854 1.850000e-59 241.0
23 TraesCS7D01G341000 chr5A 95.050 505 22 3 1 503 428252136 428251633 0.000000e+00 791.0
24 TraesCS7D01G341000 chr5A 93.939 165 8 2 4795 4958 8174661 8174498 1.110000e-61 248.0
25 TraesCS7D01G341000 chr5A 89.000 100 9 2 4990 5088 364165012 364165110 7.000000e-24 122.0
26 TraesCS7D01G341000 chr2D 94.369 515 22 6 1 512 449694272 449693762 0.000000e+00 784.0
27 TraesCS7D01G341000 chr2D 88.278 546 51 10 2073 2608 539155456 539154914 4.350000e-180 641.0
28 TraesCS7D01G341000 chr2D 87.879 198 12 4 1884 2069 375356166 375356363 6.710000e-54 222.0
29 TraesCS7D01G341000 chr2A 94.664 506 23 4 1 503 722073069 722073573 0.000000e+00 782.0
30 TraesCS7D01G341000 chr2A 82.759 174 14 8 4550 4721 141163253 141163094 1.930000e-29 141.0
31 TraesCS7D01G341000 chr2A 95.775 71 3 0 5018 5088 141162978 141162908 1.170000e-21 115.0
32 TraesCS7D01G341000 chr6A 94.477 507 22 5 1 503 10374693 10375197 0.000000e+00 776.0
33 TraesCS7D01G341000 chr6A 94.291 508 23 5 1 504 10403380 10403885 0.000000e+00 773.0
34 TraesCS7D01G341000 chr6A 88.971 544 52 6 2072 2608 360610999 360610457 0.000000e+00 665.0
35 TraesCS7D01G341000 chr6A 88.785 535 51 7 2072 2605 548045765 548045239 0.000000e+00 647.0
36 TraesCS7D01G341000 chr6A 85.037 401 35 13 1677 2072 26733639 26733259 8.090000e-103 385.0
37 TraesCS7D01G341000 chr6A 88.614 202 20 3 1682 1881 360611524 360611324 5.150000e-60 243.0
38 TraesCS7D01G341000 chr1A 94.246 504 28 1 1 503 79095931 79095428 0.000000e+00 769.0
39 TraesCS7D01G341000 chr1A 89.216 204 17 3 1675 1877 554908351 554908152 3.080000e-62 250.0
40 TraesCS7D01G341000 chr1A 88.660 194 17 2 1681 1874 26596833 26597021 1.110000e-56 231.0
41 TraesCS7D01G341000 chr1A 100.000 60 0 0 5089 5148 544743961 544743902 1.520000e-20 111.0
42 TraesCS7D01G341000 chr1A 92.105 38 3 0 3156 3193 543061028 543061065 3.000000e-03 54.7
43 TraesCS7D01G341000 chr6D 91.075 549 35 10 2069 2606 47079212 47079757 0.000000e+00 730.0
44 TraesCS7D01G341000 chr6D 87.047 193 10 6 1894 2072 427268569 427268760 2.430000e-48 204.0
45 TraesCS7D01G341000 chr5D 90.993 544 41 7 2072 2608 189169645 189169103 0.000000e+00 726.0
46 TraesCS7D01G341000 chr5D 89.405 538 50 6 2072 2608 63105189 63104658 0.000000e+00 671.0
47 TraesCS7D01G341000 chr5D 83.623 403 46 16 1683 2072 438336591 438336196 1.360000e-95 361.0
48 TraesCS7D01G341000 chr5D 93.333 165 10 1 4795 4959 198477389 198477552 5.150000e-60 243.0
49 TraesCS7D01G341000 chr3D 88.440 545 50 11 2073 2606 517006634 517006092 0.000000e+00 645.0
50 TraesCS7D01G341000 chr3D 86.052 423 30 13 1679 2072 501791535 501791957 1.320000e-115 427.0
51 TraesCS7D01G341000 chr3D 84.615 429 27 8 1683 2072 20143692 20143264 1.740000e-104 390.0
52 TraesCS7D01G341000 chr3D 91.304 207 11 7 4527 4731 563841754 563841553 5.080000e-70 276.0
53 TraesCS7D01G341000 chr3D 90.761 184 12 5 4527 4705 563841976 563841793 1.850000e-59 241.0
54 TraesCS7D01G341000 chr3D 87.958 191 11 5 1894 2072 517007053 517006863 1.120000e-51 215.0
55 TraesCS7D01G341000 chr3D 93.939 132 8 0 4957 5088 563841502 563841371 3.140000e-47 200.0
56 TraesCS7D01G341000 chr3D 92.308 39 3 0 3156 3194 352613376 352613414 7.200000e-04 56.5
57 TraesCS7D01G341000 chr6B 86.432 398 32 13 1677 2072 45982833 45982456 2.870000e-112 416.0
58 TraesCS7D01G341000 chr6B 93.293 164 10 1 4795 4958 95349574 95349412 1.850000e-59 241.0
59 TraesCS7D01G341000 chr6B 83.721 129 19 2 4962 5088 270868333 270868461 2.520000e-23 121.0
60 TraesCS7D01G341000 chrUn 85.678 398 35 13 1677 2072 95314770 95314393 2.890000e-107 399.0
61 TraesCS7D01G341000 chr2B 80.523 421 42 21 1681 2072 757258869 757259278 2.350000e-73 287.0
62 TraesCS7D01G341000 chr2B 93.333 165 10 1 4795 4959 232952240 232952403 5.150000e-60 243.0
63 TraesCS7D01G341000 chr2B 88.701 177 9 8 1917 2083 96627537 96627362 6.760000e-49 206.0
64 TraesCS7D01G341000 chr2B 95.000 60 3 0 5089 5148 603695806 603695865 1.530000e-15 95.3
65 TraesCS7D01G341000 chr3B 93.333 165 10 1 4795 4959 52743944 52744107 5.150000e-60 243.0
66 TraesCS7D01G341000 chr3B 92.308 39 3 0 3156 3194 451530681 451530719 7.200000e-04 56.5
67 TraesCS7D01G341000 chr4B 90.184 163 8 6 1917 2072 599913345 599913506 6.760000e-49 206.0
68 TraesCS7D01G341000 chr3A 100.000 60 0 0 5089 5148 43640090 43640149 1.520000e-20 111.0
69 TraesCS7D01G341000 chr3A 98.333 60 1 0 5089 5148 44223005 44223064 7.050000e-19 106.0
70 TraesCS7D01G341000 chr3A 79.487 78 16 0 3117 3194 471278850 471278927 7.200000e-04 56.5
71 TraesCS7D01G341000 chr1B 98.333 60 1 0 5089 5148 505074651 505074592 7.050000e-19 106.0
72 TraesCS7D01G341000 chr1D 78.947 95 14 6 3141 3232 447255176 447255267 5.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G341000 chr7D 436877056 436882203 5147 True 9507.000000 9507 100.000000 1 5148 1 chr7D.!!$R3 5147
1 TraesCS7D01G341000 chr7D 585601767 585602268 501 False 773.000000 773 94.455000 1 503 1 chr7D.!!$F3 502
2 TraesCS7D01G341000 chr7D 564891802 564892311 509 True 769.000000 769 93.933000 1 509 1 chr7D.!!$R4 508
3 TraesCS7D01G341000 chr7D 7700157 7700699 542 True 647.000000 647 88.483000 2073 2608 1 chr7D.!!$R1 535
4 TraesCS7D01G341000 chr7D 506896547 506897088 541 False 632.000000 632 87.978000 2069 2606 1 chr7D.!!$F2 537
5 TraesCS7D01G341000 chr7B 453334546 453338102 3556 True 1245.000000 2036 91.688667 510 4348 3 chr7B.!!$R2 3838
6 TraesCS7D01G341000 chr7A 485743291 485746303 3012 False 1138.666667 1729 89.167667 518 4312 3 chr7A.!!$F3 3794
7 TraesCS7D01G341000 chr4A 614137484 614137989 505 False 797.000000 797 95.079000 1 506 1 chr4A.!!$F1 505
8 TraesCS7D01G341000 chr5A 428251633 428252136 503 True 791.000000 791 95.050000 1 503 1 chr5A.!!$R2 502
9 TraesCS7D01G341000 chr2D 449693762 449694272 510 True 784.000000 784 94.369000 1 512 1 chr2D.!!$R1 511
10 TraesCS7D01G341000 chr2D 539154914 539155456 542 True 641.000000 641 88.278000 2073 2608 1 chr2D.!!$R2 535
11 TraesCS7D01G341000 chr2A 722073069 722073573 504 False 782.000000 782 94.664000 1 503 1 chr2A.!!$F1 502
12 TraesCS7D01G341000 chr6A 10374693 10375197 504 False 776.000000 776 94.477000 1 503 1 chr6A.!!$F1 502
13 TraesCS7D01G341000 chr6A 10403380 10403885 505 False 773.000000 773 94.291000 1 504 1 chr6A.!!$F2 503
14 TraesCS7D01G341000 chr6A 548045239 548045765 526 True 647.000000 647 88.785000 2072 2605 1 chr6A.!!$R2 533
15 TraesCS7D01G341000 chr6A 360610457 360611524 1067 True 454.000000 665 88.792500 1682 2608 2 chr6A.!!$R3 926
16 TraesCS7D01G341000 chr1A 79095428 79095931 503 True 769.000000 769 94.246000 1 503 1 chr1A.!!$R1 502
17 TraesCS7D01G341000 chr6D 47079212 47079757 545 False 730.000000 730 91.075000 2069 2606 1 chr6D.!!$F1 537
18 TraesCS7D01G341000 chr5D 189169103 189169645 542 True 726.000000 726 90.993000 2072 2608 1 chr5D.!!$R2 536
19 TraesCS7D01G341000 chr5D 63104658 63105189 531 True 671.000000 671 89.405000 2072 2608 1 chr5D.!!$R1 536
20 TraesCS7D01G341000 chr3D 517006092 517007053 961 True 430.000000 645 88.199000 1894 2606 2 chr3D.!!$R2 712
21 TraesCS7D01G341000 chr3D 563841371 563841976 605 True 239.000000 276 92.001333 4527 5088 3 chr3D.!!$R3 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 988 0.109964 GATCGAGCTAGCTACGCCAG 60.110 60.0 19.38 5.41 0.00 4.85 F
1760 2578 0.317519 GTTAGCCAGTTTTTGCGCGT 60.318 50.0 8.43 0.00 0.00 6.01 F
2650 3733 0.533951 AAGCTAAAAGGCATGCAGGC 59.466 50.0 21.36 16.47 44.61 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2855 0.029567 CCTATGCTCAGACGTCGGAC 59.970 60.0 14.65 11.8 0.00 4.79 R
2952 4038 0.036590 TCTAGCCACTGCATGCAACA 59.963 50.0 22.88 0.0 41.13 3.33 R
4404 5583 0.101579 CGTGGGAACAAAAAGGCGTT 59.898 50.0 0.00 0.0 46.06 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.323302 TTCTAGGTTGTGGCGATGCA 59.677 50.000 0.00 0.00 0.00 3.96
227 231 2.444700 CTACTTGGGCGTTGGTCGGT 62.445 60.000 0.00 0.00 40.26 4.69
329 334 0.249398 TTCGGCTAGGACAAGCTTCC 59.751 55.000 0.00 0.00 42.37 3.46
396 402 4.161102 AGTTGTAAGCCTCCTAGAGTGTT 58.839 43.478 0.00 0.00 0.00 3.32
482 490 0.890683 AATTCAAAGCCGGGCTCTTG 59.109 50.000 24.08 24.81 38.25 3.02
537 545 3.099141 CCCAAGCCTGGTAATGACAAAT 58.901 45.455 0.00 0.00 41.72 2.32
538 546 3.515104 CCCAAGCCTGGTAATGACAAATT 59.485 43.478 0.00 0.00 41.72 1.82
665 676 1.367840 AGTGTCGAACTCACCTGGC 59.632 57.895 0.00 0.00 31.64 4.85
666 677 1.668151 GTGTCGAACTCACCTGGCC 60.668 63.158 0.00 0.00 0.00 5.36
670 681 1.450312 CGAACTCACCTGGCCATCC 60.450 63.158 5.51 0.00 0.00 3.51
924 954 4.514577 ATCTCCCTTGACCGCGCG 62.515 66.667 25.67 25.67 0.00 6.86
947 977 4.142780 TCGACCATCGATCGAGCT 57.857 55.556 23.84 4.47 44.82 4.09
948 978 3.300711 TCGACCATCGATCGAGCTA 57.699 52.632 23.84 0.00 44.82 3.32
958 988 0.109964 GATCGAGCTAGCTACGCCAG 60.110 60.000 19.38 5.41 0.00 4.85
1087 1117 3.400054 CCTCCCCGTCCAAGGACC 61.400 72.222 13.35 0.00 41.76 4.46
1121 1151 3.195698 GGTCCGTGCGATCTTGCC 61.196 66.667 0.00 0.00 0.00 4.52
1125 1155 1.448540 CCGTGCGATCTTGCCTCTT 60.449 57.895 0.00 0.00 0.00 2.85
1135 1169 1.414919 TCTTGCCTCTTGTACACCGTT 59.585 47.619 0.00 0.00 0.00 4.44
1137 1171 2.736144 TGCCTCTTGTACACCGTTAG 57.264 50.000 0.00 0.00 0.00 2.34
1139 1173 2.366266 TGCCTCTTGTACACCGTTAGTT 59.634 45.455 0.00 0.00 0.00 2.24
1144 1178 5.860716 CCTCTTGTACACCGTTAGTTCTTAC 59.139 44.000 0.00 0.00 0.00 2.34
1471 1505 2.126618 TTGGTACGCAGCGTCTCG 60.127 61.111 26.87 0.00 41.54 4.04
1520 1555 7.447430 CATTTGCTCAAACGAAAAATGTATCC 58.553 34.615 0.00 0.00 34.85 2.59
1524 1559 3.432592 TCAAACGAAAAATGTATCCGCGA 59.567 39.130 8.23 0.00 0.00 5.87
1528 1563 2.601314 CGAAAAATGTATCCGCGACAGA 59.399 45.455 8.23 0.00 0.00 3.41
1585 1699 2.164624 GGCGATGTTAGGAGCTCGATAT 59.835 50.000 7.83 0.01 33.07 1.63
1611 1810 4.282703 ACTGACCAGTGGTAGTAAACGAAT 59.717 41.667 16.72 0.00 40.75 3.34
1624 1823 9.890085 GGTAGTAAACGAATTTTTGTTTTTGAC 57.110 29.630 12.58 6.68 40.87 3.18
1640 1839 8.829514 TGTTTTTGACAACATAGTAAACGAAG 57.170 30.769 0.00 0.00 34.69 3.79
1641 1840 7.429920 TGTTTTTGACAACATAGTAAACGAAGC 59.570 33.333 0.00 0.00 34.69 3.86
1642 1841 6.854496 TTTGACAACATAGTAAACGAAGCT 57.146 33.333 0.00 0.00 0.00 3.74
1643 1842 6.854496 TTGACAACATAGTAAACGAAGCTT 57.146 33.333 0.00 0.00 0.00 3.74
1644 1843 6.854496 TGACAACATAGTAAACGAAGCTTT 57.146 33.333 0.00 0.00 0.00 3.51
1645 1844 6.655062 TGACAACATAGTAAACGAAGCTTTG 58.345 36.000 12.41 12.41 0.00 2.77
1650 1849 8.469125 CAACATAGTAAACGAAGCTTTGTTTTC 58.531 33.333 37.33 32.66 40.87 2.29
1653 1852 9.233232 CATAGTAAACGAAGCTTTGTTTTCTTT 57.767 29.630 36.30 29.98 40.87 2.52
1654 1853 9.797556 ATAGTAAACGAAGCTTTGTTTTCTTTT 57.202 25.926 36.30 26.95 40.87 2.27
1677 2495 2.385315 GTGAAAACGAAGCTTTGCTCC 58.615 47.619 13.93 1.80 38.25 4.70
1756 2574 2.438868 CTGGGTTAGCCAGTTTTTGC 57.561 50.000 21.14 0.00 36.17 3.68
1759 2577 1.001745 GGTTAGCCAGTTTTTGCGCG 61.002 55.000 0.00 0.00 34.09 6.86
1760 2578 0.317519 GTTAGCCAGTTTTTGCGCGT 60.318 50.000 8.43 0.00 0.00 6.01
1806 2624 2.202298 CAAACTAAAGCGCGCCCG 60.202 61.111 30.33 16.04 37.57 6.13
1807 2625 2.357760 AAACTAAAGCGCGCCCGA 60.358 55.556 30.33 12.20 36.29 5.14
1808 2626 2.388232 AAACTAAAGCGCGCCCGAG 61.388 57.895 30.33 23.51 36.29 4.63
1877 2697 5.631929 CGATTCGATACATATTTGGTTCCGA 59.368 40.000 0.00 0.00 0.00 4.55
1878 2698 6.310467 CGATTCGATACATATTTGGTTCCGAT 59.690 38.462 0.00 0.00 0.00 4.18
1879 2699 7.486870 CGATTCGATACATATTTGGTTCCGATA 59.513 37.037 0.00 0.00 0.00 2.92
1880 2700 9.146984 GATTCGATACATATTTGGTTCCGATAA 57.853 33.333 0.00 0.00 0.00 1.75
1881 2701 9.667107 ATTCGATACATATTTGGTTCCGATAAT 57.333 29.630 0.00 0.00 0.00 1.28
1882 2702 9.496873 TTCGATACATATTTGGTTCCGATAATT 57.503 29.630 0.00 0.00 0.00 1.40
1883 2703 8.931775 TCGATACATATTTGGTTCCGATAATTG 58.068 33.333 0.00 0.00 0.00 2.32
1884 2704 8.931775 CGATACATATTTGGTTCCGATAATTGA 58.068 33.333 0.00 0.00 0.00 2.57
1888 2708 9.567776 ACATATTTGGTTCCGATAATTGATACA 57.432 29.630 0.00 0.00 0.00 2.29
1957 2783 2.799917 CGTCACATAGCCTGCTTCTACC 60.800 54.545 0.00 0.00 0.00 3.18
2012 2844 1.745864 GACTCGGACTCTGCCTCGA 60.746 63.158 0.00 0.00 0.00 4.04
2020 2852 1.680735 GACTCTGCCTCGATGATGTCT 59.319 52.381 0.00 0.00 0.00 3.41
2023 2855 1.066152 TCTGCCTCGATGATGTCTTCG 59.934 52.381 10.87 10.87 42.56 3.79
2038 2870 2.183858 CTTCGTCCGACGTCTGAGCA 62.184 60.000 19.89 0.00 43.14 4.26
2304 3364 4.814294 GGAAGGACGCACGCGGAT 62.814 66.667 16.70 0.00 44.69 4.18
2428 3498 0.586319 GCTGCAATTTATAGGCGCGA 59.414 50.000 12.10 0.00 0.00 5.87
2473 3543 2.743928 CGAGCTGCCGCCTTTTCT 60.744 61.111 0.00 0.00 36.60 2.52
2574 3657 3.805307 CAATTTACCCCGCGCGCA 61.805 61.111 32.61 10.12 0.00 6.09
2608 3691 3.247173 GCGATTGTTGGAGATGCTCTTAG 59.753 47.826 0.00 0.00 0.00 2.18
2609 3692 4.437239 CGATTGTTGGAGATGCTCTTAGT 58.563 43.478 0.00 0.00 0.00 2.24
2610 3693 4.269603 CGATTGTTGGAGATGCTCTTAGTG 59.730 45.833 0.00 0.00 0.00 2.74
2611 3694 4.623932 TTGTTGGAGATGCTCTTAGTGT 57.376 40.909 0.00 0.00 0.00 3.55
2612 3695 5.738619 TTGTTGGAGATGCTCTTAGTGTA 57.261 39.130 0.00 0.00 0.00 2.90
2613 3696 5.330455 TGTTGGAGATGCTCTTAGTGTAG 57.670 43.478 0.00 0.00 0.00 2.74
2616 3699 6.436218 TGTTGGAGATGCTCTTAGTGTAGTTA 59.564 38.462 0.00 0.00 0.00 2.24
2650 3733 0.533951 AAGCTAAAAGGCATGCAGGC 59.466 50.000 21.36 16.47 44.61 4.85
2744 3827 0.667453 TAGTTGGCGTCACGTACACA 59.333 50.000 0.00 0.00 0.00 3.72
2745 3828 0.596600 AGTTGGCGTCACGTACACAG 60.597 55.000 0.00 0.00 0.00 3.66
2763 3846 2.276116 GGCTCACCGACTCACCTCA 61.276 63.158 0.00 0.00 0.00 3.86
2823 3906 1.374252 GTGTCTGCACCCCGTACTG 60.374 63.158 0.00 0.00 39.61 2.74
2826 3909 3.706373 CTGCACCCCGTACTGGCT 61.706 66.667 0.00 0.00 35.87 4.75
2843 3926 8.173130 CGTACTGGCTATTTTTCGTTAAATTCT 58.827 33.333 3.56 0.00 0.00 2.40
2844 3927 9.836076 GTACTGGCTATTTTTCGTTAAATTCTT 57.164 29.630 3.56 0.00 0.00 2.52
2967 4053 2.367030 TATTTGTTGCATGCAGTGGC 57.633 45.000 21.50 12.75 41.68 5.01
2977 4063 3.418714 GCAGTGGCTAGATGCTGC 58.581 61.111 14.08 14.08 45.70 5.25
2990 4076 2.962253 GCTGCGATCTGGCCGTAC 60.962 66.667 0.00 0.00 0.00 3.67
2999 4085 2.736144 TCTGGCCGTACAAAGTACTG 57.264 50.000 0.00 0.80 0.00 2.74
3000 4086 1.965643 TCTGGCCGTACAAAGTACTGT 59.034 47.619 0.00 0.00 0.00 3.55
3001 4087 2.029649 TCTGGCCGTACAAAGTACTGTC 60.030 50.000 0.00 1.74 0.00 3.51
3002 4088 1.965643 TGGCCGTACAAAGTACTGTCT 59.034 47.619 0.00 0.00 0.00 3.41
3003 4089 2.366266 TGGCCGTACAAAGTACTGTCTT 59.634 45.455 0.00 0.00 0.00 3.01
3004 4090 2.735134 GGCCGTACAAAGTACTGTCTTG 59.265 50.000 0.00 0.00 0.00 3.02
3006 4092 3.801293 GCCGTACAAAGTACTGTCTTGGT 60.801 47.826 9.90 5.68 35.91 3.67
3008 4094 4.500205 CCGTACAAAGTACTGTCTTGGTCA 60.500 45.833 9.90 0.00 34.05 4.02
3010 4096 4.755266 ACAAAGTACTGTCTTGGTCAGT 57.245 40.909 9.90 4.11 46.10 3.41
3011 4097 5.099042 ACAAAGTACTGTCTTGGTCAGTT 57.901 39.130 9.90 0.00 42.50 3.16
3013 4099 6.646267 ACAAAGTACTGTCTTGGTCAGTTTA 58.354 36.000 9.90 0.00 42.50 2.01
3016 4102 7.730364 AAGTACTGTCTTGGTCAGTTTATTG 57.270 36.000 0.00 0.00 42.50 1.90
3017 4103 7.062749 AGTACTGTCTTGGTCAGTTTATTGA 57.937 36.000 0.00 0.00 42.50 2.57
3018 4104 7.680730 AGTACTGTCTTGGTCAGTTTATTGAT 58.319 34.615 0.00 0.00 42.50 2.57
3019 4105 8.812972 AGTACTGTCTTGGTCAGTTTATTGATA 58.187 33.333 0.00 0.00 42.50 2.15
3020 4106 9.088512 GTACTGTCTTGGTCAGTTTATTGATAG 57.911 37.037 3.98 0.00 42.50 2.08
3060 4206 7.841956 TGAAAGTTCAAACAGAAAAATACCCA 58.158 30.769 0.00 0.00 38.13 4.51
3078 4224 4.648651 ACCCAGAATGTTTTACGTAGCTT 58.351 39.130 0.00 0.00 0.00 3.74
3085 4231 9.872757 CAGAATGTTTTACGTAGCTTAAAAGAA 57.127 29.630 0.00 0.00 30.80 2.52
3127 4278 1.684450 TGTACTTGTGTTCAGGCGAGA 59.316 47.619 0.00 0.00 0.00 4.04
3427 4578 1.244019 GGCGACCAAGAAACAGGCAT 61.244 55.000 0.00 0.00 0.00 4.40
3434 4585 1.870055 AAGAAACAGGCATGGCAGCG 61.870 55.000 22.64 11.66 34.64 5.18
3460 4611 1.374947 CTTGAGCCCGTTCCAGGAA 59.625 57.895 0.00 0.00 0.00 3.36
3512 4663 4.771356 ACCGACATGACGACGCCG 62.771 66.667 19.00 4.33 42.50 6.46
3532 4683 2.438434 GCGTGGCCACCTGCTTAT 60.438 61.111 29.95 0.00 40.92 1.73
3559 4710 0.820891 ACTTCCAGCAGCACAAGGTG 60.821 55.000 0.00 0.00 45.83 4.00
3593 4744 4.937620 GCCATTCTCTCTGTACATGTTTCA 59.062 41.667 2.30 3.37 0.00 2.69
3651 4810 2.610219 TTCCATCACGAACAAATGCG 57.390 45.000 0.00 0.00 0.00 4.73
3851 5010 2.683212 AGCCGAGCAGGAAGAGCT 60.683 61.111 2.12 0.00 46.82 4.09
4322 5501 6.936968 ATTACTTGAGTACTCCCTTTGTCT 57.063 37.500 20.11 0.00 0.00 3.41
4341 5520 7.834068 TTGTCTTCTTATTAGTCTGCATGTC 57.166 36.000 0.00 0.00 0.00 3.06
4361 5540 2.893398 CCACTAGGCCTGGTCGAC 59.107 66.667 20.49 7.13 0.00 4.20
4362 5541 1.682684 CCACTAGGCCTGGTCGACT 60.683 63.158 20.49 0.00 0.00 4.18
4363 5542 0.395311 CCACTAGGCCTGGTCGACTA 60.395 60.000 20.49 8.77 0.00 2.59
4364 5543 1.025812 CACTAGGCCTGGTCGACTAG 58.974 60.000 20.49 21.05 39.00 2.57
4365 5544 0.106619 ACTAGGCCTGGTCGACTAGG 60.107 60.000 36.23 36.23 46.21 3.02
4366 5545 0.824182 CTAGGCCTGGTCGACTAGGG 60.824 65.000 38.97 26.35 43.95 3.53
4368 5547 4.208686 GCCTGGTCGACTAGGGCG 62.209 72.222 38.97 21.03 43.95 6.13
4369 5548 3.528370 CCTGGTCGACTAGGGCGG 61.528 72.222 33.92 14.49 40.53 6.13
4370 5549 2.439701 CTGGTCGACTAGGGCGGA 60.440 66.667 20.34 0.00 0.00 5.54
4371 5550 2.036098 TGGTCGACTAGGGCGGAA 59.964 61.111 16.46 0.00 0.00 4.30
4372 5551 1.380785 TGGTCGACTAGGGCGGAAT 60.381 57.895 16.46 0.00 0.00 3.01
4373 5552 1.067582 GGTCGACTAGGGCGGAATG 59.932 63.158 16.46 0.00 0.00 2.67
4374 5553 1.389609 GGTCGACTAGGGCGGAATGA 61.390 60.000 16.46 0.00 0.00 2.57
4375 5554 0.248949 GTCGACTAGGGCGGAATGAC 60.249 60.000 8.70 0.00 0.00 3.06
4376 5555 0.681887 TCGACTAGGGCGGAATGACA 60.682 55.000 7.31 0.00 0.00 3.58
4377 5556 0.527817 CGACTAGGGCGGAATGACAC 60.528 60.000 0.00 0.00 0.00 3.67
4378 5557 0.824759 GACTAGGGCGGAATGACACT 59.175 55.000 0.00 0.00 0.00 3.55
4379 5558 1.207329 GACTAGGGCGGAATGACACTT 59.793 52.381 0.00 0.00 0.00 3.16
4380 5559 2.429610 GACTAGGGCGGAATGACACTTA 59.570 50.000 0.00 0.00 0.00 2.24
4381 5560 2.835764 ACTAGGGCGGAATGACACTTAA 59.164 45.455 0.00 0.00 0.00 1.85
4382 5561 2.109425 AGGGCGGAATGACACTTAAC 57.891 50.000 0.00 0.00 0.00 2.01
4383 5562 1.628846 AGGGCGGAATGACACTTAACT 59.371 47.619 0.00 0.00 0.00 2.24
4384 5563 1.737793 GGGCGGAATGACACTTAACTG 59.262 52.381 0.00 0.00 0.00 3.16
4385 5564 2.614481 GGGCGGAATGACACTTAACTGA 60.614 50.000 0.00 0.00 0.00 3.41
4386 5565 2.415512 GGCGGAATGACACTTAACTGAC 59.584 50.000 0.00 0.00 0.00 3.51
4387 5566 3.064207 GCGGAATGACACTTAACTGACA 58.936 45.455 0.00 0.00 0.00 3.58
4388 5567 3.120649 GCGGAATGACACTTAACTGACAC 60.121 47.826 0.00 0.00 0.00 3.67
4389 5568 3.432252 CGGAATGACACTTAACTGACACC 59.568 47.826 0.00 0.00 0.00 4.16
4390 5569 4.385825 GGAATGACACTTAACTGACACCA 58.614 43.478 0.00 0.00 0.00 4.17
4391 5570 5.003804 GGAATGACACTTAACTGACACCAT 58.996 41.667 0.00 0.00 0.00 3.55
4392 5571 5.122396 GGAATGACACTTAACTGACACCATC 59.878 44.000 0.00 0.00 0.00 3.51
4393 5572 3.649073 TGACACTTAACTGACACCATCG 58.351 45.455 0.00 0.00 0.00 3.84
4394 5573 3.319689 TGACACTTAACTGACACCATCGA 59.680 43.478 0.00 0.00 0.00 3.59
4395 5574 4.021456 TGACACTTAACTGACACCATCGAT 60.021 41.667 0.00 0.00 0.00 3.59
4396 5575 4.245660 ACACTTAACTGACACCATCGATG 58.754 43.478 18.76 18.76 0.00 3.84
4397 5576 4.245660 CACTTAACTGACACCATCGATGT 58.754 43.478 23.27 7.29 0.00 3.06
4398 5577 4.091945 CACTTAACTGACACCATCGATGTG 59.908 45.833 23.27 21.20 0.00 3.21
4399 5578 2.099141 AACTGACACCATCGATGTGG 57.901 50.000 23.27 13.87 45.04 4.17
4400 5579 0.391661 ACTGACACCATCGATGTGGC 60.392 55.000 23.27 21.60 43.27 5.01
4401 5580 0.391528 CTGACACCATCGATGTGGCA 60.392 55.000 25.14 25.14 43.27 4.92
4402 5581 0.252761 TGACACCATCGATGTGGCAT 59.747 50.000 23.88 6.84 43.27 4.40
4403 5582 0.659427 GACACCATCGATGTGGCATG 59.341 55.000 23.27 14.75 43.27 4.06
4404 5583 0.252761 ACACCATCGATGTGGCATGA 59.747 50.000 23.27 0.00 43.27 3.07
4405 5584 1.339920 ACACCATCGATGTGGCATGAA 60.340 47.619 23.27 0.00 43.27 2.57
4406 5585 1.064505 CACCATCGATGTGGCATGAAC 59.935 52.381 23.27 0.00 43.27 3.18
4407 5586 0.305617 CCATCGATGTGGCATGAACG 59.694 55.000 23.27 0.83 31.43 3.95
4408 5587 0.316442 CATCGATGTGGCATGAACGC 60.316 55.000 17.50 0.00 0.00 4.84
4419 5598 1.792367 GCATGAACGCCTTTTTGTTCC 59.208 47.619 0.00 0.00 42.93 3.62
4420 5599 2.403259 CATGAACGCCTTTTTGTTCCC 58.597 47.619 2.98 0.00 42.93 3.97
4421 5600 1.475403 TGAACGCCTTTTTGTTCCCA 58.525 45.000 2.98 0.00 42.93 4.37
4422 5601 1.135333 TGAACGCCTTTTTGTTCCCAC 59.865 47.619 2.98 0.00 42.93 4.61
4423 5602 0.101579 AACGCCTTTTTGTTCCCACG 59.898 50.000 0.00 0.00 0.00 4.94
4424 5603 1.660264 CGCCTTTTTGTTCCCACGC 60.660 57.895 0.00 0.00 0.00 5.34
4425 5604 1.739667 GCCTTTTTGTTCCCACGCT 59.260 52.632 0.00 0.00 0.00 5.07
4426 5605 0.597377 GCCTTTTTGTTCCCACGCTG 60.597 55.000 0.00 0.00 0.00 5.18
4427 5606 0.744281 CCTTTTTGTTCCCACGCTGT 59.256 50.000 0.00 0.00 0.00 4.40
4428 5607 1.269051 CCTTTTTGTTCCCACGCTGTC 60.269 52.381 0.00 0.00 0.00 3.51
4429 5608 1.403679 CTTTTTGTTCCCACGCTGTCA 59.596 47.619 0.00 0.00 0.00 3.58
4430 5609 1.686355 TTTTGTTCCCACGCTGTCAT 58.314 45.000 0.00 0.00 0.00 3.06
4431 5610 0.950836 TTTGTTCCCACGCTGTCATG 59.049 50.000 0.00 0.00 0.00 3.07
4432 5611 0.107643 TTGTTCCCACGCTGTCATGA 59.892 50.000 0.00 0.00 0.00 3.07
4433 5612 0.320683 TGTTCCCACGCTGTCATGAG 60.321 55.000 0.00 0.00 0.00 2.90
4434 5613 0.320771 GTTCCCACGCTGTCATGAGT 60.321 55.000 0.00 0.00 0.00 3.41
4435 5614 0.396435 TTCCCACGCTGTCATGAGTT 59.604 50.000 0.00 0.00 0.00 3.01
4436 5615 0.396435 TCCCACGCTGTCATGAGTTT 59.604 50.000 0.00 0.00 0.00 2.66
4437 5616 0.798776 CCCACGCTGTCATGAGTTTC 59.201 55.000 0.00 0.00 0.00 2.78
4438 5617 1.609061 CCCACGCTGTCATGAGTTTCT 60.609 52.381 0.00 0.00 0.00 2.52
4439 5618 2.146342 CCACGCTGTCATGAGTTTCTT 58.854 47.619 0.00 0.00 0.00 2.52
4440 5619 2.096069 CCACGCTGTCATGAGTTTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
4441 5620 2.545526 CACGCTGTCATGAGTTTCTTGT 59.454 45.455 0.00 0.00 0.00 3.16
4442 5621 3.002656 CACGCTGTCATGAGTTTCTTGTT 59.997 43.478 0.00 0.00 0.00 2.83
4443 5622 3.627577 ACGCTGTCATGAGTTTCTTGTTT 59.372 39.130 0.00 0.00 0.00 2.83
4444 5623 4.096382 ACGCTGTCATGAGTTTCTTGTTTT 59.904 37.500 0.00 0.00 0.00 2.43
4445 5624 5.036737 CGCTGTCATGAGTTTCTTGTTTTT 58.963 37.500 0.00 0.00 0.00 1.94
4475 5654 4.386716 CGATATGTCGTACGCTAGTTCT 57.613 45.455 11.24 0.00 42.78 3.01
4476 5655 4.770287 CGATATGTCGTACGCTAGTTCTT 58.230 43.478 11.24 0.00 42.78 2.52
4477 5656 5.909210 CGATATGTCGTACGCTAGTTCTTA 58.091 41.667 11.24 0.65 42.78 2.10
4478 5657 6.008275 CGATATGTCGTACGCTAGTTCTTAG 58.992 44.000 11.24 0.00 42.78 2.18
4479 5658 4.548991 ATGTCGTACGCTAGTTCTTAGG 57.451 45.455 11.24 0.00 0.00 2.69
4480 5659 2.096496 TGTCGTACGCTAGTTCTTAGGC 59.904 50.000 11.24 0.00 0.00 3.93
4481 5660 2.354199 GTCGTACGCTAGTTCTTAGGCT 59.646 50.000 11.24 0.00 0.00 4.58
4482 5661 2.353889 TCGTACGCTAGTTCTTAGGCTG 59.646 50.000 11.24 0.00 0.00 4.85
4483 5662 2.353889 CGTACGCTAGTTCTTAGGCTGA 59.646 50.000 0.52 0.00 0.00 4.26
4484 5663 3.181503 CGTACGCTAGTTCTTAGGCTGAA 60.182 47.826 0.52 0.00 0.00 3.02
4485 5664 3.233684 ACGCTAGTTCTTAGGCTGAAC 57.766 47.619 9.13 9.13 42.77 3.18
4486 5665 2.094130 ACGCTAGTTCTTAGGCTGAACC 60.094 50.000 12.58 0.05 43.28 3.62
4487 5666 2.541556 GCTAGTTCTTAGGCTGAACCG 58.458 52.381 12.58 7.03 46.52 4.44
4488 5667 2.165845 GCTAGTTCTTAGGCTGAACCGA 59.834 50.000 12.58 3.01 46.52 4.69
4489 5668 3.181474 GCTAGTTCTTAGGCTGAACCGAT 60.181 47.826 12.58 0.25 46.52 4.18
4490 5669 3.528597 AGTTCTTAGGCTGAACCGATC 57.471 47.619 12.58 0.00 46.52 3.69
4491 5670 3.100671 AGTTCTTAGGCTGAACCGATCT 58.899 45.455 12.58 0.00 46.52 2.75
4492 5671 4.279145 AGTTCTTAGGCTGAACCGATCTA 58.721 43.478 12.58 0.00 46.52 1.98
4493 5672 4.098196 AGTTCTTAGGCTGAACCGATCTAC 59.902 45.833 12.58 0.00 46.52 2.59
4494 5673 3.628008 TCTTAGGCTGAACCGATCTACA 58.372 45.455 0.00 0.00 46.52 2.74
4495 5674 3.380637 TCTTAGGCTGAACCGATCTACAC 59.619 47.826 0.00 0.00 46.52 2.90
4496 5675 0.456221 AGGCTGAACCGATCTACACG 59.544 55.000 0.00 0.00 46.52 4.49
4497 5676 0.172803 GGCTGAACCGATCTACACGT 59.827 55.000 0.00 0.00 0.00 4.49
4498 5677 1.402968 GGCTGAACCGATCTACACGTA 59.597 52.381 0.00 0.00 0.00 3.57
4499 5678 2.034305 GGCTGAACCGATCTACACGTAT 59.966 50.000 0.00 0.00 0.00 3.06
4500 5679 3.490419 GGCTGAACCGATCTACACGTATT 60.490 47.826 0.00 0.00 0.00 1.89
4501 5680 3.486108 GCTGAACCGATCTACACGTATTG 59.514 47.826 0.00 0.00 0.00 1.90
4502 5681 3.441163 TGAACCGATCTACACGTATTGC 58.559 45.455 0.00 0.00 0.00 3.56
4503 5682 3.119424 TGAACCGATCTACACGTATTGCA 60.119 43.478 0.00 0.00 0.00 4.08
4504 5683 3.513680 ACCGATCTACACGTATTGCAA 57.486 42.857 0.00 0.00 0.00 4.08
4505 5684 4.054780 ACCGATCTACACGTATTGCAAT 57.945 40.909 17.56 17.56 0.00 3.56
4506 5685 5.190992 ACCGATCTACACGTATTGCAATA 57.809 39.130 15.21 15.21 0.00 1.90
4507 5686 5.220381 ACCGATCTACACGTATTGCAATAG 58.780 41.667 19.41 14.90 0.00 1.73
4508 5687 4.621460 CCGATCTACACGTATTGCAATAGG 59.379 45.833 28.74 28.74 34.02 2.57
4509 5688 4.621460 CGATCTACACGTATTGCAATAGGG 59.379 45.833 31.68 24.53 32.55 3.53
4510 5689 5.564063 CGATCTACACGTATTGCAATAGGGA 60.564 44.000 31.68 22.76 32.55 4.20
4511 5690 5.601583 TCTACACGTATTGCAATAGGGAA 57.398 39.130 31.68 19.96 32.55 3.97
4512 5691 5.979993 TCTACACGTATTGCAATAGGGAAA 58.020 37.500 31.68 19.70 32.55 3.13
4513 5692 6.408035 TCTACACGTATTGCAATAGGGAAAA 58.592 36.000 31.68 18.40 32.55 2.29
4514 5693 5.560966 ACACGTATTGCAATAGGGAAAAG 57.439 39.130 31.68 21.15 32.55 2.27
4515 5694 5.250200 ACACGTATTGCAATAGGGAAAAGA 58.750 37.500 31.68 6.41 32.55 2.52
4516 5695 5.708230 ACACGTATTGCAATAGGGAAAAGAA 59.292 36.000 31.68 5.74 32.55 2.52
4517 5696 6.377146 ACACGTATTGCAATAGGGAAAAGAAT 59.623 34.615 31.68 13.78 32.55 2.40
4518 5697 7.093945 ACACGTATTGCAATAGGGAAAAGAATT 60.094 33.333 31.68 13.22 32.55 2.17
4519 5698 7.432252 CACGTATTGCAATAGGGAAAAGAATTC 59.568 37.037 31.68 12.40 32.55 2.17
4520 5699 6.918022 CGTATTGCAATAGGGAAAAGAATTCC 59.082 38.462 24.86 7.35 37.86 3.01
4521 5700 6.872585 ATTGCAATAGGGAAAAGAATTCCA 57.127 33.333 11.02 0.00 40.32 3.53
4522 5701 5.659440 TGCAATAGGGAAAAGAATTCCAC 57.341 39.130 9.27 0.00 40.32 4.02
4523 5702 5.332743 TGCAATAGGGAAAAGAATTCCACT 58.667 37.500 9.27 6.53 40.32 4.00
4524 5703 5.418840 TGCAATAGGGAAAAGAATTCCACTC 59.581 40.000 9.27 0.00 40.32 3.51
4525 5704 5.449177 GCAATAGGGAAAAGAATTCCACTCG 60.449 44.000 9.27 0.00 40.32 4.18
4526 5705 5.693769 ATAGGGAAAAGAATTCCACTCGA 57.306 39.130 9.27 0.00 40.32 4.04
4527 5706 4.576330 AGGGAAAAGAATTCCACTCGAT 57.424 40.909 9.27 0.00 40.32 3.59
4528 5707 4.518249 AGGGAAAAGAATTCCACTCGATC 58.482 43.478 9.27 0.00 40.32 3.69
4529 5708 4.226168 AGGGAAAAGAATTCCACTCGATCT 59.774 41.667 9.27 0.00 40.32 2.75
4530 5709 4.944317 GGGAAAAGAATTCCACTCGATCTT 59.056 41.667 9.27 0.00 40.32 2.40
4586 5766 2.841215 TCGCTTCTTCCTTCCGAAAAA 58.159 42.857 0.00 0.00 0.00 1.94
4613 5793 3.121396 TCCGTCGTGTAAAAATTTCGTCG 60.121 43.478 8.22 8.22 34.36 5.12
4635 6031 3.060740 GGTCCGTCGTTAGCAAATATTCG 60.061 47.826 0.00 0.00 0.00 3.34
4641 6037 4.027458 GTCGTTAGCAAATATTCGTACGCA 60.027 41.667 11.24 0.00 0.00 5.24
4648 6044 4.898488 GCAAATATTCGTACGCAGTCAATC 59.102 41.667 11.24 0.00 43.93 2.67
4689 6085 0.604780 CCATCGATCACATGGGCCTC 60.605 60.000 4.53 0.00 37.71 4.70
4702 6098 3.695606 GCCTCAGCCCACTCACGA 61.696 66.667 0.00 0.00 0.00 4.35
4761 6157 4.644103 TCGATACCTGTAGTAGTTTGCC 57.356 45.455 0.00 0.00 33.42 4.52
4766 6162 2.230750 ACCTGTAGTAGTTTGCCGAGTC 59.769 50.000 0.00 0.00 0.00 3.36
4773 6169 2.031465 TTTGCCGAGTCGAACCCC 59.969 61.111 15.64 0.00 0.00 4.95
4775 6171 2.326773 TTTGCCGAGTCGAACCCCAA 62.327 55.000 15.64 6.31 0.00 4.12
4782 6178 1.003718 GTCGAACCCCAACCCTCTG 60.004 63.158 0.00 0.00 0.00 3.35
4798 6194 5.077564 ACCCTCTGGTTTAATTTCAACTCC 58.922 41.667 0.00 0.00 44.75 3.85
4799 6195 4.462834 CCCTCTGGTTTAATTTCAACTCCC 59.537 45.833 0.00 0.00 0.00 4.30
4800 6196 5.325239 CCTCTGGTTTAATTTCAACTCCCT 58.675 41.667 0.00 0.00 0.00 4.20
4801 6197 5.416013 CCTCTGGTTTAATTTCAACTCCCTC 59.584 44.000 0.00 0.00 0.00 4.30
4802 6198 5.321927 TCTGGTTTAATTTCAACTCCCTCC 58.678 41.667 0.00 0.00 0.00 4.30
4803 6199 4.076394 TGGTTTAATTTCAACTCCCTCCG 58.924 43.478 0.00 0.00 0.00 4.63
4804 6200 4.077108 GGTTTAATTTCAACTCCCTCCGT 58.923 43.478 0.00 0.00 0.00 4.69
4805 6201 4.521639 GGTTTAATTTCAACTCCCTCCGTT 59.478 41.667 0.00 0.00 0.00 4.44
4806 6202 5.010314 GGTTTAATTTCAACTCCCTCCGTTT 59.990 40.000 0.00 0.00 0.00 3.60
4807 6203 5.952526 TTAATTTCAACTCCCTCCGTTTC 57.047 39.130 0.00 0.00 0.00 2.78
4808 6204 2.265589 TTTCAACTCCCTCCGTTTCC 57.734 50.000 0.00 0.00 0.00 3.13
4809 6205 1.133363 TTCAACTCCCTCCGTTTCCA 58.867 50.000 0.00 0.00 0.00 3.53
4810 6206 1.133363 TCAACTCCCTCCGTTTCCAA 58.867 50.000 0.00 0.00 0.00 3.53
4811 6207 1.491332 TCAACTCCCTCCGTTTCCAAA 59.509 47.619 0.00 0.00 0.00 3.28
4812 6208 2.107552 TCAACTCCCTCCGTTTCCAAAT 59.892 45.455 0.00 0.00 0.00 2.32
4813 6209 3.328343 TCAACTCCCTCCGTTTCCAAATA 59.672 43.478 0.00 0.00 0.00 1.40
4814 6210 4.018779 TCAACTCCCTCCGTTTCCAAATAT 60.019 41.667 0.00 0.00 0.00 1.28
4815 6211 4.586306 ACTCCCTCCGTTTCCAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
4816 6212 4.930696 ACTCCCTCCGTTTCCAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
4817 6213 4.705023 ACTCCCTCCGTTTCCAAATATTTG 59.295 41.667 19.40 19.40 37.90 2.32
4818 6214 4.668636 TCCCTCCGTTTCCAAATATTTGT 58.331 39.130 23.24 0.00 36.45 2.83
4819 6215 4.703093 TCCCTCCGTTTCCAAATATTTGTC 59.297 41.667 23.24 11.68 36.45 3.18
4820 6216 4.705023 CCCTCCGTTTCCAAATATTTGTCT 59.295 41.667 23.24 0.00 36.45 3.41
4821 6217 5.185056 CCCTCCGTTTCCAAATATTTGTCTT 59.815 40.000 23.24 0.00 36.45 3.01
4822 6218 6.295067 CCCTCCGTTTCCAAATATTTGTCTTT 60.295 38.462 23.24 0.00 36.45 2.52
4823 6219 6.806739 CCTCCGTTTCCAAATATTTGTCTTTC 59.193 38.462 23.24 10.84 36.45 2.62
4824 6220 7.309194 CCTCCGTTTCCAAATATTTGTCTTTCT 60.309 37.037 23.24 0.00 36.45 2.52
4825 6221 8.624367 TCCGTTTCCAAATATTTGTCTTTCTA 57.376 30.769 23.24 5.03 36.45 2.10
4826 6222 9.069082 TCCGTTTCCAAATATTTGTCTTTCTAA 57.931 29.630 23.24 6.95 36.45 2.10
4827 6223 9.341899 CCGTTTCCAAATATTTGTCTTTCTAAG 57.658 33.333 23.24 7.88 36.45 2.18
4828 6224 8.850452 CGTTTCCAAATATTTGTCTTTCTAAGC 58.150 33.333 23.24 9.22 36.45 3.09
4829 6225 9.691362 GTTTCCAAATATTTGTCTTTCTAAGCA 57.309 29.630 23.24 0.00 36.45 3.91
4852 6248 9.554724 AGCATTTTAAATGAACTACAACATACG 57.445 29.630 20.37 0.00 0.00 3.06
4853 6249 8.794406 GCATTTTAAATGAACTACAACATACGG 58.206 33.333 20.37 0.00 0.00 4.02
4858 6254 9.872721 TTAAATGAACTACAACATACGGATGTA 57.127 29.630 15.10 0.00 45.93 2.29
4859 6255 8.958119 AAATGAACTACAACATACGGATGTAT 57.042 30.769 15.10 8.21 45.93 2.29
4894 6290 9.981460 ATTTTAGAGGGTAGATTCACTCATTTT 57.019 29.630 0.00 0.00 40.03 1.82
4895 6291 8.792830 TTTAGAGGGTAGATTCACTCATTTTG 57.207 34.615 0.00 0.00 40.03 2.44
4896 6292 5.189180 AGAGGGTAGATTCACTCATTTTGC 58.811 41.667 0.00 0.00 40.03 3.68
4897 6293 5.045286 AGAGGGTAGATTCACTCATTTTGCT 60.045 40.000 0.00 0.00 40.03 3.91
4898 6294 5.189180 AGGGTAGATTCACTCATTTTGCTC 58.811 41.667 0.00 0.00 0.00 4.26
4899 6295 5.045286 AGGGTAGATTCACTCATTTTGCTCT 60.045 40.000 0.00 0.00 0.00 4.09
4900 6296 5.065731 GGGTAGATTCACTCATTTTGCTCTG 59.934 44.000 0.00 0.00 0.00 3.35
4901 6297 5.645497 GGTAGATTCACTCATTTTGCTCTGT 59.355 40.000 0.00 0.00 0.00 3.41
4902 6298 6.818644 GGTAGATTCACTCATTTTGCTCTGTA 59.181 38.462 0.00 0.00 0.00 2.74
4903 6299 7.497249 GGTAGATTCACTCATTTTGCTCTGTAT 59.503 37.037 0.00 0.00 0.00 2.29
4904 6300 7.934855 AGATTCACTCATTTTGCTCTGTATT 57.065 32.000 0.00 0.00 0.00 1.89
4905 6301 8.345724 AGATTCACTCATTTTGCTCTGTATTT 57.654 30.769 0.00 0.00 0.00 1.40
4906 6302 9.453572 AGATTCACTCATTTTGCTCTGTATTTA 57.546 29.630 0.00 0.00 0.00 1.40
4907 6303 9.713740 GATTCACTCATTTTGCTCTGTATTTAG 57.286 33.333 0.00 0.00 0.00 1.85
4908 6304 8.621532 TTCACTCATTTTGCTCTGTATTTAGT 57.378 30.769 0.00 0.00 0.00 2.24
4909 6305 8.256611 TCACTCATTTTGCTCTGTATTTAGTC 57.743 34.615 0.00 0.00 0.00 2.59
4910 6306 7.877612 TCACTCATTTTGCTCTGTATTTAGTCA 59.122 33.333 0.00 0.00 0.00 3.41
4911 6307 7.959651 CACTCATTTTGCTCTGTATTTAGTCAC 59.040 37.037 0.00 0.00 0.00 3.67
4912 6308 7.880195 ACTCATTTTGCTCTGTATTTAGTCACT 59.120 33.333 0.00 0.00 0.00 3.41
4913 6309 8.621532 TCATTTTGCTCTGTATTTAGTCACTT 57.378 30.769 0.00 0.00 0.00 3.16
4914 6310 8.506437 TCATTTTGCTCTGTATTTAGTCACTTG 58.494 33.333 0.00 0.00 0.00 3.16
4915 6311 7.801716 TTTTGCTCTGTATTTAGTCACTTGT 57.198 32.000 0.00 0.00 0.00 3.16
4916 6312 7.801716 TTTGCTCTGTATTTAGTCACTTGTT 57.198 32.000 0.00 0.00 0.00 2.83
4917 6313 6.785488 TGCTCTGTATTTAGTCACTTGTTG 57.215 37.500 0.00 0.00 0.00 3.33
4918 6314 6.521162 TGCTCTGTATTTAGTCACTTGTTGA 58.479 36.000 0.00 0.00 0.00 3.18
4919 6315 6.989759 TGCTCTGTATTTAGTCACTTGTTGAA 59.010 34.615 0.00 0.00 35.39 2.69
4920 6316 7.497579 TGCTCTGTATTTAGTCACTTGTTGAAA 59.502 33.333 0.00 0.00 35.39 2.69
4921 6317 8.507249 GCTCTGTATTTAGTCACTTGTTGAAAT 58.493 33.333 0.00 0.00 35.39 2.17
4923 6319 9.778741 TCTGTATTTAGTCACTTGTTGAAATCT 57.221 29.630 0.00 0.00 35.39 2.40
4925 6321 9.778741 TGTATTTAGTCACTTGTTGAAATCTCT 57.221 29.630 0.00 0.00 35.39 3.10
4931 6327 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4932 6328 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4933 6329 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4934 6330 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4935 6331 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4936 6332 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4939 6335 9.342308 TGTTGAAATCTCTAGAAAGACAAATGT 57.658 29.630 0.00 0.00 0.00 2.71
4943 6339 9.617975 GAAATCTCTAGAAAGACAAATGTTTGG 57.382 33.333 9.98 0.00 42.34 3.28
4944 6340 7.693969 ATCTCTAGAAAGACAAATGTTTGGG 57.306 36.000 9.98 0.00 42.34 4.12
4945 6341 6.837312 TCTCTAGAAAGACAAATGTTTGGGA 58.163 36.000 9.98 0.00 42.34 4.37
4946 6342 7.287061 TCTCTAGAAAGACAAATGTTTGGGAA 58.713 34.615 9.98 0.00 42.34 3.97
4947 6343 7.228706 TCTCTAGAAAGACAAATGTTTGGGAAC 59.771 37.037 9.98 0.05 42.34 3.62
4948 6344 4.932146 AGAAAGACAAATGTTTGGGAACG 58.068 39.130 9.98 0.00 42.34 3.95
4949 6345 3.726291 AAGACAAATGTTTGGGAACGG 57.274 42.857 9.98 0.00 42.34 4.44
4950 6346 2.938838 AGACAAATGTTTGGGAACGGA 58.061 42.857 9.98 0.00 42.34 4.69
4951 6347 2.884639 AGACAAATGTTTGGGAACGGAG 59.115 45.455 9.98 0.00 42.34 4.63
4952 6348 1.960689 ACAAATGTTTGGGAACGGAGG 59.039 47.619 9.98 0.00 42.34 4.30
4953 6349 1.272212 CAAATGTTTGGGAACGGAGGG 59.728 52.381 0.00 0.00 38.65 4.30
4954 6350 0.774908 AATGTTTGGGAACGGAGGGA 59.225 50.000 0.00 0.00 38.65 4.20
4955 6351 0.328258 ATGTTTGGGAACGGAGGGAG 59.672 55.000 0.00 0.00 38.65 4.30
4959 6355 0.616679 TTGGGAACGGAGGGAGTAGG 60.617 60.000 0.00 0.00 0.00 3.18
4985 6381 3.753272 CACATCCAACTGACAAAGGTAGG 59.247 47.826 0.00 0.00 0.00 3.18
4994 6390 6.368779 ACTGACAAAGGTAGGCTTTATGTA 57.631 37.500 0.00 0.00 0.00 2.29
4995 6391 6.775708 ACTGACAAAGGTAGGCTTTATGTAA 58.224 36.000 0.00 0.00 0.00 2.41
4999 6395 8.107095 TGACAAAGGTAGGCTTTATGTAAAGAT 58.893 33.333 14.90 6.38 44.07 2.40
5037 6433 2.550208 CCTTATATTGTCCCACCTCGCC 60.550 54.545 0.00 0.00 0.00 5.54
5083 6479 8.839343 TGATTTATATACACTTGCCACTTGATG 58.161 33.333 0.00 0.00 0.00 3.07
5102 6498 8.613060 CTTGATGTCAAGTTACTATATGGCAT 57.387 34.615 13.32 4.88 46.11 4.40
5103 6499 9.710900 CTTGATGTCAAGTTACTATATGGCATA 57.289 33.333 10.07 10.07 46.11 3.14
5108 6504 9.283768 TGTCAAGTTACTATATGGCATATTTGG 57.716 33.333 23.96 16.24 0.00 3.28
5109 6505 8.730680 GTCAAGTTACTATATGGCATATTTGGG 58.269 37.037 23.96 14.15 0.00 4.12
5110 6506 8.664992 TCAAGTTACTATATGGCATATTTGGGA 58.335 33.333 23.96 9.82 0.00 4.37
5111 6507 8.950210 CAAGTTACTATATGGCATATTTGGGAG 58.050 37.037 23.96 16.76 0.00 4.30
5112 6508 7.633789 AGTTACTATATGGCATATTTGGGAGG 58.366 38.462 23.96 9.21 0.00 4.30
5113 6509 4.860022 ACTATATGGCATATTTGGGAGGC 58.140 43.478 23.96 0.00 0.00 4.70
5114 6510 2.198827 TATGGCATATTTGGGAGGCG 57.801 50.000 2.32 0.00 0.00 5.52
5115 6511 1.181098 ATGGCATATTTGGGAGGCGC 61.181 55.000 0.00 0.00 0.00 6.53
5116 6512 2.639286 GCATATTTGGGAGGCGCG 59.361 61.111 0.00 0.00 0.00 6.86
5117 6513 2.908073 GCATATTTGGGAGGCGCGG 61.908 63.158 8.83 0.00 0.00 6.46
5118 6514 1.227823 CATATTTGGGAGGCGCGGA 60.228 57.895 8.83 0.00 0.00 5.54
5119 6515 0.817634 CATATTTGGGAGGCGCGGAA 60.818 55.000 8.83 0.00 0.00 4.30
5120 6516 0.818040 ATATTTGGGAGGCGCGGAAC 60.818 55.000 8.83 0.00 0.00 3.62
5121 6517 1.906105 TATTTGGGAGGCGCGGAACT 61.906 55.000 8.83 0.00 0.00 3.01
5122 6518 3.771945 TATTTGGGAGGCGCGGAACTC 62.772 57.143 8.83 1.46 0.00 3.01
5124 6520 4.821589 GGGAGGCGCGGAACTCTG 62.822 72.222 8.83 0.00 34.22 3.35
5125 6521 4.070552 GGAGGCGCGGAACTCTGT 62.071 66.667 8.83 0.00 34.22 3.41
5126 6522 2.048127 GAGGCGCGGAACTCTGTT 60.048 61.111 8.83 0.00 0.00 3.16
5127 6523 2.048127 AGGCGCGGAACTCTGTTC 60.048 61.111 8.83 2.16 0.00 3.18
5128 6524 3.479269 GGCGCGGAACTCTGTTCG 61.479 66.667 8.83 2.37 0.00 3.95
5129 6525 3.479269 GCGCGGAACTCTGTTCGG 61.479 66.667 8.83 11.82 0.00 4.30
5130 6526 2.257371 CGCGGAACTCTGTTCGGA 59.743 61.111 17.87 0.00 0.00 4.55
5131 6527 1.372499 CGCGGAACTCTGTTCGGAA 60.372 57.895 17.87 0.00 0.00 4.30
5132 6528 1.615107 CGCGGAACTCTGTTCGGAAC 61.615 60.000 13.86 13.86 0.00 3.62
5133 6529 0.599204 GCGGAACTCTGTTCGGAACA 60.599 55.000 21.30 21.30 39.52 3.18
5134 6530 1.860676 CGGAACTCTGTTCGGAACAA 58.139 50.000 22.60 13.30 41.61 2.83
5135 6531 2.413837 CGGAACTCTGTTCGGAACAAT 58.586 47.619 22.60 9.96 41.61 2.71
5136 6532 2.157668 CGGAACTCTGTTCGGAACAATG 59.842 50.000 22.60 18.99 41.61 2.82
5137 6533 3.399330 GGAACTCTGTTCGGAACAATGA 58.601 45.455 22.60 16.33 41.61 2.57
5138 6534 3.813166 GGAACTCTGTTCGGAACAATGAA 59.187 43.478 22.60 9.20 41.61 2.57
5139 6535 4.083802 GGAACTCTGTTCGGAACAATGAAG 60.084 45.833 22.60 18.20 41.61 3.02
5140 6536 4.336889 ACTCTGTTCGGAACAATGAAGA 57.663 40.909 22.60 15.08 41.61 2.87
5141 6537 4.899502 ACTCTGTTCGGAACAATGAAGAT 58.100 39.130 22.60 5.52 41.61 2.40
5142 6538 4.692625 ACTCTGTTCGGAACAATGAAGATG 59.307 41.667 22.60 9.94 41.61 2.90
5143 6539 4.893608 TCTGTTCGGAACAATGAAGATGA 58.106 39.130 22.60 11.91 41.61 2.92
5144 6540 4.931601 TCTGTTCGGAACAATGAAGATGAG 59.068 41.667 22.60 8.65 41.61 2.90
5145 6541 3.436704 TGTTCGGAACAATGAAGATGAGC 59.563 43.478 20.52 0.00 38.72 4.26
5146 6542 2.632377 TCGGAACAATGAAGATGAGCC 58.368 47.619 0.00 0.00 0.00 4.70
5147 6543 2.027285 TCGGAACAATGAAGATGAGCCA 60.027 45.455 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.065491 TGCATCGCCACAACCTAGAAT 60.065 47.619 0.00 0.00 0.00 2.40
76 79 4.379243 CGTGCCAGCTTCGGGACT 62.379 66.667 12.08 0.00 44.71 3.85
179 183 0.393944 ACACATCCGCCGTCTCTCTA 60.394 55.000 0.00 0.00 0.00 2.43
227 231 3.492656 GCAACAGAGTGTGGTAAGTGAGA 60.493 47.826 0.00 0.00 0.00 3.27
329 334 8.330302 CAAAAAGAATACAGGAAAACAAAGCTG 58.670 33.333 0.00 0.00 0.00 4.24
396 402 1.067425 CACGACCAAACGATACAGGGA 60.067 52.381 0.00 0.00 37.03 4.20
506 514 0.679640 CAGGCTTGGGTCCGCAATTA 60.680 55.000 0.00 0.00 0.00 1.40
537 545 4.769345 ATTTCTTTTGCCCTCCACAAAA 57.231 36.364 0.00 0.00 42.93 2.44
538 546 4.444164 GGAATTTCTTTTGCCCTCCACAAA 60.444 41.667 0.00 0.00 35.30 2.83
625 636 1.068055 GCATCTTTGCTGTGGAACCAG 60.068 52.381 0.00 0.00 45.77 4.00
647 658 1.367840 GCCAGGTGAGTTCGACACT 59.632 57.895 4.84 2.78 39.07 3.55
652 663 1.450312 GGATGGCCAGGTGAGTTCG 60.450 63.158 13.05 0.00 0.00 3.95
665 676 1.152819 CTCCATGGGTGCTGGATGG 60.153 63.158 13.02 0.00 41.83 3.51
666 677 0.033796 AACTCCATGGGTGCTGGATG 60.034 55.000 13.02 0.00 41.83 3.51
670 681 1.308069 CGGAAACTCCATGGGTGCTG 61.308 60.000 13.02 6.44 35.91 4.41
675 686 1.452108 GAGGCGGAAACTCCATGGG 60.452 63.158 13.02 5.22 35.91 4.00
934 964 1.201976 CGTAGCTAGCTCGATCGATGG 60.202 57.143 23.26 9.24 0.00 3.51
935 965 2.152237 CGTAGCTAGCTCGATCGATG 57.848 55.000 23.26 13.59 0.00 3.84
958 988 1.269051 CGGGGGCGCTTTAATTTGATC 60.269 52.381 7.64 0.00 0.00 2.92
994 1024 1.429423 GCTTCTTGCCCATGTACGC 59.571 57.895 0.00 0.00 35.15 4.42
1101 1131 1.696832 GCAAGATCGCACGGACCTTC 61.697 60.000 0.00 0.00 0.00 3.46
1121 1151 5.860716 GGTAAGAACTAACGGTGTACAAGAG 59.139 44.000 0.00 0.00 0.00 2.85
1125 1155 4.584325 ACTGGTAAGAACTAACGGTGTACA 59.416 41.667 0.00 0.00 35.34 2.90
1265 1299 1.675310 CGCTGCCCTCATTGGTCAA 60.675 57.895 0.00 0.00 0.00 3.18
1435 1469 0.398664 AGTAGCCCCGGTAGAATGCT 60.399 55.000 0.00 0.80 36.11 3.79
1471 1505 1.460273 TTTGGAAGAACTTGGCGGGC 61.460 55.000 0.00 0.00 0.00 6.13
1520 1555 2.179517 GAGGTCCTGTCTGTCGCG 59.820 66.667 0.00 0.00 0.00 5.87
1524 1559 2.990740 AAGAGAGAGGTCCTGTCTGT 57.009 50.000 22.83 16.25 43.89 3.41
1528 1563 2.588464 TCGAAAGAGAGAGGTCCTGT 57.412 50.000 0.00 0.00 34.84 4.00
1585 1699 2.865119 TACTACCACTGGTCAGTCGA 57.135 50.000 3.21 0.00 40.20 4.20
1624 1823 7.908193 AAACAAAGCTTCGTTTACTATGTTG 57.092 32.000 13.76 0.00 33.68 3.33
1630 1829 7.062956 CCAAAAGAAAACAAAGCTTCGTTTACT 59.937 33.333 15.57 1.46 34.32 2.24
1631 1830 7.170773 CCAAAAGAAAACAAAGCTTCGTTTAC 58.829 34.615 15.57 0.00 34.32 2.01
1632 1831 6.311690 CCCAAAAGAAAACAAAGCTTCGTTTA 59.688 34.615 15.57 0.00 34.32 2.01
1633 1832 5.121611 CCCAAAAGAAAACAAAGCTTCGTTT 59.878 36.000 9.73 9.73 36.92 3.60
1634 1833 4.629634 CCCAAAAGAAAACAAAGCTTCGTT 59.370 37.500 0.00 0.00 0.00 3.85
1635 1834 4.180817 CCCAAAAGAAAACAAAGCTTCGT 58.819 39.130 0.00 0.00 0.00 3.85
1636 1835 4.032786 CACCCAAAAGAAAACAAAGCTTCG 59.967 41.667 0.00 0.00 0.00 3.79
1637 1836 5.175127 TCACCCAAAAGAAAACAAAGCTTC 58.825 37.500 0.00 0.00 0.00 3.86
1638 1837 5.159273 TCACCCAAAAGAAAACAAAGCTT 57.841 34.783 0.00 0.00 0.00 3.74
1639 1838 4.817318 TCACCCAAAAGAAAACAAAGCT 57.183 36.364 0.00 0.00 0.00 3.74
1640 1839 5.871465 TTTCACCCAAAAGAAAACAAAGC 57.129 34.783 0.00 0.00 31.35 3.51
1650 1849 3.436700 AGCTTCGTTTTCACCCAAAAG 57.563 42.857 0.00 0.00 34.49 2.27
1653 1852 2.737039 GCAAAGCTTCGTTTTCACCCAA 60.737 45.455 0.00 0.00 0.00 4.12
1654 1853 1.202359 GCAAAGCTTCGTTTTCACCCA 60.202 47.619 0.00 0.00 0.00 4.51
1712 2530 2.347452 TGTATTCTGACTTTTAGCGCGC 59.653 45.455 26.66 26.66 0.00 6.86
1817 2635 3.370366 CAGATGAAATATAGCGCTCCTGC 59.630 47.826 16.34 0.00 0.00 4.85
1846 2664 9.006839 ACCAAATATGTATCGAATCGTAGTAGA 57.993 33.333 1.52 0.00 0.00 2.59
1853 2671 5.631929 TCGGAACCAAATATGTATCGAATCG 59.368 40.000 0.00 0.00 0.00 3.34
1888 2708 9.931210 GCAACTAAACTATCTACGCATTATTTT 57.069 29.630 0.00 0.00 0.00 1.82
1889 2709 9.326413 AGCAACTAAACTATCTACGCATTATTT 57.674 29.630 0.00 0.00 0.00 1.40
1890 2710 8.888579 AGCAACTAAACTATCTACGCATTATT 57.111 30.769 0.00 0.00 0.00 1.40
1891 2711 9.408069 GTAGCAACTAAACTATCTACGCATTAT 57.592 33.333 0.00 0.00 0.00 1.28
1892 2712 7.588854 CGTAGCAACTAAACTATCTACGCATTA 59.411 37.037 6.67 0.00 41.46 1.90
1908 2728 9.722184 ACTATGAACTATCTATCGTAGCAACTA 57.278 33.333 0.00 0.00 38.26 2.24
1910 2730 9.332301 GAACTATGAACTATCTATCGTAGCAAC 57.668 37.037 0.00 0.00 38.26 4.17
1911 2731 8.228464 CGAACTATGAACTATCTATCGTAGCAA 58.772 37.037 0.00 0.00 38.26 3.91
1912 2732 7.387122 ACGAACTATGAACTATCTATCGTAGCA 59.613 37.037 0.00 0.00 38.99 3.49
1913 2733 7.741198 ACGAACTATGAACTATCTATCGTAGC 58.259 38.462 0.00 0.00 38.99 3.58
1926 2752 4.504461 CAGGCTATGTGACGAACTATGAAC 59.496 45.833 0.00 0.00 0.00 3.18
2012 2844 0.809385 ACGTCGGACGAAGACATCAT 59.191 50.000 34.40 8.08 46.05 2.45
2020 2852 1.583495 ATGCTCAGACGTCGGACGAA 61.583 55.000 34.40 16.18 46.05 3.85
2023 2855 0.029567 CCTATGCTCAGACGTCGGAC 59.970 60.000 14.65 11.80 0.00 4.79
2038 2870 1.153429 GCGGTTCCTTGACGCCTAT 60.153 57.895 0.00 0.00 46.92 2.57
2290 3350 4.796231 GACATCCGCGTGCGTCCT 62.796 66.667 13.70 0.00 37.81 3.85
2549 3627 2.094649 CGCGGGGTAAATTGGCTTTTTA 60.095 45.455 0.00 0.00 0.00 1.52
2584 3667 0.391661 AGCATCTCCAACAATCGCGT 60.392 50.000 5.77 0.00 0.00 6.01
2608 3691 5.100751 AGTCACTGTGTACGTAACTACAC 57.899 43.478 11.53 11.53 44.68 2.90
2609 3692 6.566564 GCTTAGTCACTGTGTACGTAACTACA 60.567 42.308 7.79 2.67 0.00 2.74
2610 3693 5.792468 GCTTAGTCACTGTGTACGTAACTAC 59.208 44.000 7.79 0.00 0.00 2.73
2611 3694 5.702670 AGCTTAGTCACTGTGTACGTAACTA 59.297 40.000 7.79 4.37 0.00 2.24
2612 3695 4.518211 AGCTTAGTCACTGTGTACGTAACT 59.482 41.667 7.79 5.34 0.00 2.24
2613 3696 4.791974 AGCTTAGTCACTGTGTACGTAAC 58.208 43.478 7.79 0.00 0.00 2.50
2616 3699 5.443185 TTTAGCTTAGTCACTGTGTACGT 57.557 39.130 7.79 0.00 0.00 3.57
2744 3827 1.979693 GAGGTGAGTCGGTGAGCCT 60.980 63.158 0.00 0.00 0.00 4.58
2745 3828 1.608717 ATGAGGTGAGTCGGTGAGCC 61.609 60.000 0.00 0.00 0.00 4.70
2763 3846 1.614903 CATAAATGGCACCGCATGGAT 59.385 47.619 0.00 0.00 39.21 3.41
2888 3971 9.573133 GGTCTTCCTGTTTATTCATTACAAATG 57.427 33.333 0.00 0.00 0.00 2.32
2889 3972 9.533831 AGGTCTTCCTGTTTATTCATTACAAAT 57.466 29.630 0.00 0.00 43.33 2.32
2890 3973 8.934023 AGGTCTTCCTGTTTATTCATTACAAA 57.066 30.769 0.00 0.00 43.33 2.83
2951 4037 0.883153 CTAGCCACTGCATGCAACAA 59.117 50.000 22.88 0.00 41.13 2.83
2952 4038 0.036590 TCTAGCCACTGCATGCAACA 59.963 50.000 22.88 0.00 41.13 3.33
2967 4053 0.669932 GGCCAGATCGCAGCATCTAG 60.670 60.000 0.00 2.71 31.47 2.43
2977 4063 2.159282 AGTACTTTGTACGGCCAGATCG 60.159 50.000 2.24 0.00 0.00 3.69
2990 4076 7.730364 ATAAACTGACCAAGACAGTACTTTG 57.270 36.000 0.00 0.00 46.01 2.77
2999 4085 9.654663 AACTACTATCAATAAACTGACCAAGAC 57.345 33.333 0.00 0.00 0.00 3.01
3000 4086 9.653287 CAACTACTATCAATAAACTGACCAAGA 57.347 33.333 0.00 0.00 0.00 3.02
3001 4087 9.653287 TCAACTACTATCAATAAACTGACCAAG 57.347 33.333 0.00 0.00 0.00 3.61
3006 4092 9.890629 AGCATTCAACTACTATCAATAAACTGA 57.109 29.630 0.00 0.00 0.00 3.41
3018 4104 9.719355 TGAACTTTCAATAGCATTCAACTACTA 57.281 29.630 0.00 0.00 33.55 1.82
3019 4105 8.621532 TGAACTTTCAATAGCATTCAACTACT 57.378 30.769 0.00 0.00 33.55 2.57
3020 4106 9.677567 TTTGAACTTTCAATAGCATTCAACTAC 57.322 29.630 5.26 0.00 45.65 2.73
3057 4203 6.730960 TTAAGCTACGTAAAACATTCTGGG 57.269 37.500 0.00 0.00 0.00 4.45
3088 4234 7.510549 AGTACAATGTTACACTCTGCATTTT 57.489 32.000 0.00 0.00 30.17 1.82
3089 4235 7.013274 ACAAGTACAATGTTACACTCTGCATTT 59.987 33.333 0.00 0.00 30.17 2.32
3090 4236 6.486657 ACAAGTACAATGTTACACTCTGCATT 59.513 34.615 0.00 0.00 32.48 3.56
3091 4237 5.997746 ACAAGTACAATGTTACACTCTGCAT 59.002 36.000 0.00 0.00 0.00 3.96
3092 4238 5.236263 CACAAGTACAATGTTACACTCTGCA 59.764 40.000 0.00 0.00 0.00 4.41
3093 4239 5.236478 ACACAAGTACAATGTTACACTCTGC 59.764 40.000 0.00 0.00 0.00 4.26
3193 4344 2.436646 GTGTGATGGACCTGGCGG 60.437 66.667 0.00 0.00 0.00 6.13
3406 4557 1.301401 CCTGTTTCTTGGTCGCCGA 60.301 57.895 0.00 0.00 0.00 5.54
3427 4578 4.927782 AAGTTGCCGACGCTGCCA 62.928 61.111 0.00 0.00 35.36 4.92
3487 4638 2.438254 TCATGTCGGTGCATGGCC 60.438 61.111 0.00 0.00 44.54 5.36
3491 4642 1.805539 CGTCGTCATGTCGGTGCAT 60.806 57.895 12.31 0.00 0.00 3.96
3495 4646 4.771356 CGGCGTCGTCATGTCGGT 62.771 66.667 12.31 0.00 32.69 4.69
3520 4671 3.133464 TGCGCATAAGCAGGTGGC 61.133 61.111 5.66 0.00 42.92 5.01
3529 4680 1.016627 GCTGGAAGTCATGCGCATAA 58.983 50.000 24.84 5.58 35.30 1.90
3532 4683 2.032376 TGCTGGAAGTCATGCGCA 59.968 55.556 14.96 14.96 35.30 6.09
3559 4710 1.078143 AGAATGGCAGGGAAGACGC 60.078 57.895 0.00 0.00 0.00 5.19
3593 4744 8.630037 ACTAGCAGTTTTACAATTTGTTTAGCT 58.370 29.630 7.45 10.86 0.00 3.32
3610 4761 9.515226 TGGAATTTAATCTGTAAACTAGCAGTT 57.485 29.630 0.00 0.00 40.80 3.16
3613 4764 9.679661 TGATGGAATTTAATCTGTAAACTAGCA 57.320 29.630 0.00 0.00 0.00 3.49
3628 4787 5.092105 CGCATTTGTTCGTGATGGAATTTA 58.908 37.500 0.00 0.00 0.00 1.40
3739 4898 1.672356 CGCTAAGTGCTGGTTGGCT 60.672 57.895 0.00 0.00 40.11 4.75
3851 5010 1.377725 GGTACAGGTCCGTCGGAGA 60.378 63.158 15.95 0.00 29.39 3.71
4348 5527 1.229359 CCCTAGTCGACCAGGCCTA 59.771 63.158 22.99 2.27 0.00 3.93
4349 5528 2.042843 CCCTAGTCGACCAGGCCT 60.043 66.667 22.99 0.00 0.00 5.19
4350 5529 3.851128 GCCCTAGTCGACCAGGCC 61.851 72.222 22.99 10.00 37.66 5.19
4351 5530 4.208686 CGCCCTAGTCGACCAGGC 62.209 72.222 22.99 23.61 40.33 4.85
4352 5531 3.528370 CCGCCCTAGTCGACCAGG 61.528 72.222 21.67 21.67 0.00 4.45
4353 5532 1.392710 ATTCCGCCCTAGTCGACCAG 61.393 60.000 13.01 8.18 0.00 4.00
4354 5533 1.380785 ATTCCGCCCTAGTCGACCA 60.381 57.895 13.01 0.00 0.00 4.02
4355 5534 1.067582 CATTCCGCCCTAGTCGACC 59.932 63.158 13.01 0.00 0.00 4.79
4356 5535 0.248949 GTCATTCCGCCCTAGTCGAC 60.249 60.000 7.70 7.70 0.00 4.20
4357 5536 0.681887 TGTCATTCCGCCCTAGTCGA 60.682 55.000 3.55 0.00 0.00 4.20
4358 5537 0.527817 GTGTCATTCCGCCCTAGTCG 60.528 60.000 0.00 0.00 0.00 4.18
4359 5538 0.824759 AGTGTCATTCCGCCCTAGTC 59.175 55.000 0.00 0.00 0.00 2.59
4360 5539 1.276622 AAGTGTCATTCCGCCCTAGT 58.723 50.000 0.00 0.00 0.00 2.57
4361 5540 3.118738 AGTTAAGTGTCATTCCGCCCTAG 60.119 47.826 0.00 0.00 0.00 3.02
4362 5541 2.835764 AGTTAAGTGTCATTCCGCCCTA 59.164 45.455 0.00 0.00 0.00 3.53
4363 5542 1.628846 AGTTAAGTGTCATTCCGCCCT 59.371 47.619 0.00 0.00 0.00 5.19
4364 5543 1.737793 CAGTTAAGTGTCATTCCGCCC 59.262 52.381 1.85 0.00 0.00 6.13
4365 5544 2.415512 GTCAGTTAAGTGTCATTCCGCC 59.584 50.000 10.08 0.00 0.00 6.13
4366 5545 3.064207 TGTCAGTTAAGTGTCATTCCGC 58.936 45.455 10.08 0.00 0.00 5.54
4367 5546 3.432252 GGTGTCAGTTAAGTGTCATTCCG 59.568 47.826 12.38 0.00 0.00 4.30
4368 5547 4.385825 TGGTGTCAGTTAAGTGTCATTCC 58.614 43.478 12.38 10.52 0.00 3.01
4369 5548 5.163953 CGATGGTGTCAGTTAAGTGTCATTC 60.164 44.000 12.38 9.17 0.00 2.67
4370 5549 4.690748 CGATGGTGTCAGTTAAGTGTCATT 59.309 41.667 12.38 2.96 0.00 2.57
4371 5550 4.021456 TCGATGGTGTCAGTTAAGTGTCAT 60.021 41.667 12.38 10.59 0.00 3.06
4372 5551 3.319689 TCGATGGTGTCAGTTAAGTGTCA 59.680 43.478 10.08 8.05 0.00 3.58
4373 5552 3.909430 TCGATGGTGTCAGTTAAGTGTC 58.091 45.455 10.08 5.46 0.00 3.67
4374 5553 4.245660 CATCGATGGTGTCAGTTAAGTGT 58.754 43.478 17.96 0.00 0.00 3.55
4375 5554 4.091945 CACATCGATGGTGTCAGTTAAGTG 59.908 45.833 28.09 9.53 0.00 3.16
4376 5555 4.245660 CACATCGATGGTGTCAGTTAAGT 58.754 43.478 28.09 0.37 0.00 2.24
4377 5556 3.618594 CCACATCGATGGTGTCAGTTAAG 59.381 47.826 28.09 6.36 34.77 1.85
4378 5557 3.595173 CCACATCGATGGTGTCAGTTAA 58.405 45.455 28.09 0.00 34.77 2.01
4379 5558 2.676750 GCCACATCGATGGTGTCAGTTA 60.677 50.000 28.09 0.00 42.28 2.24
4380 5559 1.945819 GCCACATCGATGGTGTCAGTT 60.946 52.381 28.09 2.64 42.28 3.16
4381 5560 0.391661 GCCACATCGATGGTGTCAGT 60.392 55.000 28.09 3.42 42.28 3.41
4382 5561 0.391528 TGCCACATCGATGGTGTCAG 60.392 55.000 28.09 11.33 42.28 3.51
4383 5562 0.252761 ATGCCACATCGATGGTGTCA 59.747 50.000 28.09 19.02 42.28 3.58
4384 5563 0.659427 CATGCCACATCGATGGTGTC 59.341 55.000 28.09 14.49 42.28 3.67
4385 5564 0.252761 TCATGCCACATCGATGGTGT 59.747 50.000 28.09 7.38 42.28 4.16
4386 5565 1.064505 GTTCATGCCACATCGATGGTG 59.935 52.381 28.09 21.39 42.28 4.17
4387 5566 1.382522 GTTCATGCCACATCGATGGT 58.617 50.000 28.09 11.93 42.28 3.55
4388 5567 0.305617 CGTTCATGCCACATCGATGG 59.694 55.000 28.09 15.29 43.26 3.51
4389 5568 0.316442 GCGTTCATGCCACATCGATG 60.316 55.000 23.68 23.68 0.00 3.84
4390 5569 2.016961 GCGTTCATGCCACATCGAT 58.983 52.632 0.00 0.00 0.00 3.59
4391 5570 3.485110 GCGTTCATGCCACATCGA 58.515 55.556 0.00 0.00 0.00 3.59
4399 5578 1.792367 GGAACAAAAAGGCGTTCATGC 59.208 47.619 0.00 0.00 42.67 4.06
4400 5579 2.223923 TGGGAACAAAAAGGCGTTCATG 60.224 45.455 0.00 0.00 42.67 3.07
4401 5580 2.035632 TGGGAACAAAAAGGCGTTCAT 58.964 42.857 0.00 0.00 42.67 2.57
4402 5581 1.135333 GTGGGAACAAAAAGGCGTTCA 59.865 47.619 0.00 0.00 46.06 3.18
4403 5582 1.847818 GTGGGAACAAAAAGGCGTTC 58.152 50.000 0.00 0.00 46.06 3.95
4404 5583 0.101579 CGTGGGAACAAAAAGGCGTT 59.898 50.000 0.00 0.00 46.06 4.84
4405 5584 1.731093 CGTGGGAACAAAAAGGCGT 59.269 52.632 0.00 0.00 46.06 5.68
4406 5585 1.660264 GCGTGGGAACAAAAAGGCG 60.660 57.895 0.00 0.00 46.06 5.52
4407 5586 0.597377 CAGCGTGGGAACAAAAAGGC 60.597 55.000 0.00 0.00 46.06 4.35
4408 5587 0.744281 ACAGCGTGGGAACAAAAAGG 59.256 50.000 0.00 0.00 46.06 3.11
4409 5588 1.403679 TGACAGCGTGGGAACAAAAAG 59.596 47.619 0.00 0.00 46.06 2.27
4410 5589 1.464734 TGACAGCGTGGGAACAAAAA 58.535 45.000 0.00 0.00 46.06 1.94
4411 5590 1.336440 CATGACAGCGTGGGAACAAAA 59.664 47.619 0.00 0.00 46.06 2.44
4412 5591 0.950836 CATGACAGCGTGGGAACAAA 59.049 50.000 0.00 0.00 46.06 2.83
4413 5592 0.107643 TCATGACAGCGTGGGAACAA 59.892 50.000 0.00 0.00 46.06 2.83
4414 5593 0.320683 CTCATGACAGCGTGGGAACA 60.321 55.000 0.00 0.00 33.08 3.18
4415 5594 0.320771 ACTCATGACAGCGTGGGAAC 60.321 55.000 0.00 0.00 35.01 3.62
4416 5595 0.396435 AACTCATGACAGCGTGGGAA 59.604 50.000 0.00 0.00 35.01 3.97
4417 5596 0.396435 AAACTCATGACAGCGTGGGA 59.604 50.000 0.00 0.00 35.01 4.37
4418 5597 0.798776 GAAACTCATGACAGCGTGGG 59.201 55.000 0.00 0.00 37.53 4.61
4419 5598 1.800805 AGAAACTCATGACAGCGTGG 58.199 50.000 0.00 0.00 0.00 4.94
4420 5599 2.545526 ACAAGAAACTCATGACAGCGTG 59.454 45.455 0.00 0.00 0.00 5.34
4421 5600 2.838736 ACAAGAAACTCATGACAGCGT 58.161 42.857 0.00 0.00 0.00 5.07
4422 5601 3.885484 AACAAGAAACTCATGACAGCG 57.115 42.857 0.00 0.00 0.00 5.18
4455 5634 6.305639 CCTAAGAACTAGCGTACGACATATC 58.694 44.000 21.65 10.79 0.00 1.63
4456 5635 5.334724 GCCTAAGAACTAGCGTACGACATAT 60.335 44.000 21.65 0.67 0.00 1.78
4457 5636 4.024556 GCCTAAGAACTAGCGTACGACATA 60.025 45.833 21.65 7.26 0.00 2.29
4458 5637 3.243002 GCCTAAGAACTAGCGTACGACAT 60.243 47.826 21.65 6.37 0.00 3.06
4459 5638 2.096496 GCCTAAGAACTAGCGTACGACA 59.904 50.000 21.65 4.07 0.00 4.35
4460 5639 2.354199 AGCCTAAGAACTAGCGTACGAC 59.646 50.000 21.65 10.59 0.00 4.34
4461 5640 2.353889 CAGCCTAAGAACTAGCGTACGA 59.646 50.000 21.65 0.00 0.00 3.43
4462 5641 2.353889 TCAGCCTAAGAACTAGCGTACG 59.646 50.000 11.84 11.84 0.00 3.67
4463 5642 4.104066 GTTCAGCCTAAGAACTAGCGTAC 58.896 47.826 0.00 0.00 41.56 3.67
4464 5643 3.129988 GGTTCAGCCTAAGAACTAGCGTA 59.870 47.826 6.09 0.00 43.67 4.42
4465 5644 2.094130 GGTTCAGCCTAAGAACTAGCGT 60.094 50.000 6.09 0.00 43.67 5.07
4466 5645 2.541556 GGTTCAGCCTAAGAACTAGCG 58.458 52.381 6.09 0.00 43.67 4.26
4467 5646 2.165845 TCGGTTCAGCCTAAGAACTAGC 59.834 50.000 6.09 0.00 43.67 3.42
4468 5647 4.339814 AGATCGGTTCAGCCTAAGAACTAG 59.660 45.833 6.09 0.00 43.67 2.57
4469 5648 4.279145 AGATCGGTTCAGCCTAAGAACTA 58.721 43.478 6.09 0.00 43.67 2.24
4470 5649 3.100671 AGATCGGTTCAGCCTAAGAACT 58.899 45.455 6.09 0.00 43.67 3.01
4471 5650 3.528597 AGATCGGTTCAGCCTAAGAAC 57.471 47.619 0.00 0.00 43.49 3.01
4472 5651 4.021229 TGTAGATCGGTTCAGCCTAAGAA 58.979 43.478 0.00 0.00 34.25 2.52
4473 5652 3.380637 GTGTAGATCGGTTCAGCCTAAGA 59.619 47.826 0.00 0.00 34.25 2.10
4474 5653 3.707793 GTGTAGATCGGTTCAGCCTAAG 58.292 50.000 0.00 0.00 34.25 2.18
4475 5654 2.098607 CGTGTAGATCGGTTCAGCCTAA 59.901 50.000 0.00 0.00 34.25 2.69
4476 5655 1.674441 CGTGTAGATCGGTTCAGCCTA 59.326 52.381 0.00 0.00 34.25 3.93
4477 5656 0.456221 CGTGTAGATCGGTTCAGCCT 59.544 55.000 0.00 0.00 34.25 4.58
4478 5657 0.172803 ACGTGTAGATCGGTTCAGCC 59.827 55.000 0.00 0.00 0.00 4.85
4479 5658 2.838386 TACGTGTAGATCGGTTCAGC 57.162 50.000 0.00 0.00 0.00 4.26
4480 5659 3.486108 GCAATACGTGTAGATCGGTTCAG 59.514 47.826 0.00 0.00 0.00 3.02
4481 5660 3.119424 TGCAATACGTGTAGATCGGTTCA 60.119 43.478 0.00 0.00 0.00 3.18
4482 5661 3.441163 TGCAATACGTGTAGATCGGTTC 58.559 45.455 0.00 0.00 0.00 3.62
4483 5662 3.513680 TGCAATACGTGTAGATCGGTT 57.486 42.857 0.00 0.00 0.00 4.44
4484 5663 3.513680 TTGCAATACGTGTAGATCGGT 57.486 42.857 0.00 0.00 0.00 4.69
4485 5664 4.621460 CCTATTGCAATACGTGTAGATCGG 59.379 45.833 15.21 7.27 0.00 4.18
4486 5665 4.621460 CCCTATTGCAATACGTGTAGATCG 59.379 45.833 15.21 1.99 0.00 3.69
4487 5666 5.779922 TCCCTATTGCAATACGTGTAGATC 58.220 41.667 15.21 0.00 0.00 2.75
4488 5667 5.801531 TCCCTATTGCAATACGTGTAGAT 57.198 39.130 15.21 0.00 0.00 1.98
4489 5668 5.601583 TTCCCTATTGCAATACGTGTAGA 57.398 39.130 15.21 3.70 0.00 2.59
4490 5669 6.537301 TCTTTTCCCTATTGCAATACGTGTAG 59.463 38.462 15.21 6.37 0.00 2.74
4491 5670 6.408035 TCTTTTCCCTATTGCAATACGTGTA 58.592 36.000 15.21 0.00 0.00 2.90
4492 5671 5.250200 TCTTTTCCCTATTGCAATACGTGT 58.750 37.500 15.21 0.00 0.00 4.49
4493 5672 5.811399 TCTTTTCCCTATTGCAATACGTG 57.189 39.130 15.21 6.17 0.00 4.49
4494 5673 7.404671 AATTCTTTTCCCTATTGCAATACGT 57.595 32.000 15.21 0.00 0.00 3.57
4495 5674 6.918022 GGAATTCTTTTCCCTATTGCAATACG 59.082 38.462 15.21 11.23 32.48 3.06
4496 5675 7.706607 GTGGAATTCTTTTCCCTATTGCAATAC 59.293 37.037 15.21 1.18 37.79 1.89
4497 5676 7.619302 AGTGGAATTCTTTTCCCTATTGCAATA 59.381 33.333 17.94 17.94 37.79 1.90
4498 5677 6.441604 AGTGGAATTCTTTTCCCTATTGCAAT 59.558 34.615 17.56 17.56 37.79 3.56
4499 5678 5.779771 AGTGGAATTCTTTTCCCTATTGCAA 59.220 36.000 0.00 0.00 37.79 4.08
4500 5679 5.332743 AGTGGAATTCTTTTCCCTATTGCA 58.667 37.500 5.23 0.00 37.79 4.08
4501 5680 5.449177 CGAGTGGAATTCTTTTCCCTATTGC 60.449 44.000 5.23 0.00 37.79 3.56
4502 5681 5.880332 TCGAGTGGAATTCTTTTCCCTATTG 59.120 40.000 5.23 0.00 37.79 1.90
4503 5682 6.062258 TCGAGTGGAATTCTTTTCCCTATT 57.938 37.500 5.23 0.00 37.79 1.73
4504 5683 5.693769 TCGAGTGGAATTCTTTTCCCTAT 57.306 39.130 5.23 0.00 37.79 2.57
4505 5684 5.425539 AGATCGAGTGGAATTCTTTTCCCTA 59.574 40.000 5.23 0.00 37.79 3.53
4506 5685 4.226168 AGATCGAGTGGAATTCTTTTCCCT 59.774 41.667 5.23 0.00 37.79 4.20
4507 5686 4.518249 AGATCGAGTGGAATTCTTTTCCC 58.482 43.478 5.23 0.00 37.79 3.97
4508 5687 7.713073 AGATAAGATCGAGTGGAATTCTTTTCC 59.287 37.037 5.23 0.00 39.03 3.13
4509 5688 8.655651 AGATAAGATCGAGTGGAATTCTTTTC 57.344 34.615 5.23 3.54 0.00 2.29
4510 5689 9.454859 AAAGATAAGATCGAGTGGAATTCTTTT 57.545 29.630 5.23 0.00 0.00 2.27
4586 5766 4.996062 AATTTTTACACGACGGACGAAT 57.004 36.364 6.90 0.00 45.77 3.34
4613 5793 3.060740 CGAATATTTGCTAACGACGGACC 60.061 47.826 0.00 0.00 0.00 4.46
4635 6031 2.924290 GGACAGAAGATTGACTGCGTAC 59.076 50.000 0.00 0.00 37.61 3.67
4641 6037 3.306364 CGTGGAAGGACAGAAGATTGACT 60.306 47.826 0.00 0.00 0.00 3.41
4648 6044 1.613925 TCTCACGTGGAAGGACAGAAG 59.386 52.381 17.00 1.22 0.00 2.85
4700 6096 4.659172 TTTGCCTGGGCCACCTCG 62.659 66.667 0.00 0.00 41.09 4.63
4702 6098 2.285180 TTTTTGCCTGGGCCACCT 59.715 55.556 0.00 0.00 41.09 4.00
4731 6127 9.939802 AACTACTACAGGTATCGATTTCTTTTT 57.060 29.630 1.71 0.00 0.00 1.94
4732 6128 9.939802 AAACTACTACAGGTATCGATTTCTTTT 57.060 29.630 1.71 0.00 0.00 2.27
4733 6129 9.367444 CAAACTACTACAGGTATCGATTTCTTT 57.633 33.333 1.71 0.00 0.00 2.52
4735 6131 6.979238 GCAAACTACTACAGGTATCGATTTCT 59.021 38.462 1.71 0.00 0.00 2.52
4736 6132 6.200475 GGCAAACTACTACAGGTATCGATTTC 59.800 42.308 1.71 0.00 0.00 2.17
4737 6133 6.047231 GGCAAACTACTACAGGTATCGATTT 58.953 40.000 1.71 0.00 0.00 2.17
4738 6134 5.598769 GGCAAACTACTACAGGTATCGATT 58.401 41.667 1.71 0.00 0.00 3.34
4739 6135 4.261489 CGGCAAACTACTACAGGTATCGAT 60.261 45.833 2.16 2.16 0.00 3.59
4740 6136 3.065786 CGGCAAACTACTACAGGTATCGA 59.934 47.826 0.00 0.00 0.00 3.59
4742 6138 4.097589 ACTCGGCAAACTACTACAGGTATC 59.902 45.833 0.00 0.00 0.00 2.24
4743 6139 4.021916 ACTCGGCAAACTACTACAGGTAT 58.978 43.478 0.00 0.00 0.00 2.73
4744 6140 3.424703 ACTCGGCAAACTACTACAGGTA 58.575 45.455 0.00 0.00 0.00 3.08
4745 6141 2.230750 GACTCGGCAAACTACTACAGGT 59.769 50.000 0.00 0.00 0.00 4.00
4746 6142 2.731341 CGACTCGGCAAACTACTACAGG 60.731 54.545 0.00 0.00 0.00 4.00
4747 6143 2.161012 TCGACTCGGCAAACTACTACAG 59.839 50.000 0.00 0.00 0.00 2.74
4748 6144 2.153645 TCGACTCGGCAAACTACTACA 58.846 47.619 0.00 0.00 0.00 2.74
4749 6145 2.907910 TCGACTCGGCAAACTACTAC 57.092 50.000 0.00 0.00 0.00 2.73
4750 6146 2.095059 GGTTCGACTCGGCAAACTACTA 60.095 50.000 0.00 0.00 0.00 1.82
4751 6147 1.336609 GGTTCGACTCGGCAAACTACT 60.337 52.381 0.00 0.00 0.00 2.57
4752 6148 1.066136 GGTTCGACTCGGCAAACTAC 58.934 55.000 0.00 0.00 0.00 2.73
4753 6149 0.037975 GGGTTCGACTCGGCAAACTA 60.038 55.000 0.00 0.00 0.00 2.24
4761 6157 2.047560 GGGTTGGGGTTCGACTCG 60.048 66.667 0.00 0.00 0.00 4.18
4766 6162 2.351276 CCAGAGGGTTGGGGTTCG 59.649 66.667 0.00 0.00 34.46 3.95
4782 6178 4.077108 ACGGAGGGAGTTGAAATTAAACC 58.923 43.478 0.00 0.00 0.00 3.27
4784 6180 5.242171 GGAAACGGAGGGAGTTGAAATTAAA 59.758 40.000 0.00 0.00 31.43 1.52
4785 6181 4.763279 GGAAACGGAGGGAGTTGAAATTAA 59.237 41.667 0.00 0.00 31.43 1.40
4791 6187 1.133363 TTGGAAACGGAGGGAGTTGA 58.867 50.000 0.00 0.00 31.43 3.18
4792 6188 1.975660 TTTGGAAACGGAGGGAGTTG 58.024 50.000 0.00 0.00 31.43 3.16
4793 6189 2.971901 ATTTGGAAACGGAGGGAGTT 57.028 45.000 0.00 0.00 0.00 3.01
4794 6190 4.586306 AATATTTGGAAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
4795 6191 4.705023 ACAAATATTTGGAAACGGAGGGAG 59.295 41.667 27.43 2.64 42.34 4.30
4796 6192 4.668636 ACAAATATTTGGAAACGGAGGGA 58.331 39.130 27.43 0.00 42.34 4.20
4797 6193 4.705023 AGACAAATATTTGGAAACGGAGGG 59.295 41.667 27.43 3.22 42.34 4.30
4798 6194 5.897377 AGACAAATATTTGGAAACGGAGG 57.103 39.130 27.43 3.68 42.34 4.30
4799 6195 7.593825 AGAAAGACAAATATTTGGAAACGGAG 58.406 34.615 27.43 4.34 42.34 4.63
4800 6196 7.519032 AGAAAGACAAATATTTGGAAACGGA 57.481 32.000 27.43 0.00 42.34 4.69
4801 6197 9.341899 CTTAGAAAGACAAATATTTGGAAACGG 57.658 33.333 27.43 5.66 42.34 4.44
4802 6198 8.850452 GCTTAGAAAGACAAATATTTGGAAACG 58.150 33.333 27.43 6.31 42.34 3.60
4803 6199 9.691362 TGCTTAGAAAGACAAATATTTGGAAAC 57.309 29.630 27.43 16.80 42.34 2.78
4826 6222 9.554724 CGTATGTTGTAGTTCATTTAAAATGCT 57.445 29.630 0.00 0.00 0.00 3.79
4827 6223 8.794406 CCGTATGTTGTAGTTCATTTAAAATGC 58.206 33.333 0.00 0.00 0.00 3.56
4831 6227 9.221933 ACATCCGTATGTTGTAGTTCATTTAAA 57.778 29.630 0.00 0.00 44.07 1.52
4832 6228 8.780846 ACATCCGTATGTTGTAGTTCATTTAA 57.219 30.769 0.00 0.00 44.07 1.52
4834 6230 8.826710 CATACATCCGTATGTTGTAGTTCATTT 58.173 33.333 0.00 0.00 46.70 2.32
4835 6231 8.365399 CATACATCCGTATGTTGTAGTTCATT 57.635 34.615 0.00 0.00 46.70 2.57
4836 6232 7.946655 CATACATCCGTATGTTGTAGTTCAT 57.053 36.000 0.00 0.00 46.70 2.57
4868 6264 9.981460 AAAATGAGTGAATCTACCCTCTAAAAT 57.019 29.630 0.00 0.00 0.00 1.82
4869 6265 9.231297 CAAAATGAGTGAATCTACCCTCTAAAA 57.769 33.333 0.00 0.00 0.00 1.52
4870 6266 7.336931 GCAAAATGAGTGAATCTACCCTCTAAA 59.663 37.037 0.00 0.00 0.00 1.85
4871 6267 6.823689 GCAAAATGAGTGAATCTACCCTCTAA 59.176 38.462 0.00 0.00 0.00 2.10
4872 6268 6.156949 AGCAAAATGAGTGAATCTACCCTCTA 59.843 38.462 0.00 0.00 0.00 2.43
4873 6269 5.045286 AGCAAAATGAGTGAATCTACCCTCT 60.045 40.000 0.00 0.00 0.00 3.69
4874 6270 5.189180 AGCAAAATGAGTGAATCTACCCTC 58.811 41.667 0.00 0.00 0.00 4.30
4875 6271 5.045286 AGAGCAAAATGAGTGAATCTACCCT 60.045 40.000 0.00 0.00 0.00 4.34
4876 6272 5.065731 CAGAGCAAAATGAGTGAATCTACCC 59.934 44.000 0.00 0.00 0.00 3.69
4877 6273 5.645497 ACAGAGCAAAATGAGTGAATCTACC 59.355 40.000 0.00 0.00 0.00 3.18
4878 6274 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
4879 6275 9.453572 AAATACAGAGCAAAATGAGTGAATCTA 57.546 29.630 0.00 0.00 0.00 1.98
4880 6276 7.934855 AATACAGAGCAAAATGAGTGAATCT 57.065 32.000 0.00 0.00 0.00 2.40
4881 6277 9.713740 CTAAATACAGAGCAAAATGAGTGAATC 57.286 33.333 0.00 0.00 0.00 2.52
4882 6278 9.236006 ACTAAATACAGAGCAAAATGAGTGAAT 57.764 29.630 0.00 0.00 0.00 2.57
4883 6279 8.621532 ACTAAATACAGAGCAAAATGAGTGAA 57.378 30.769 0.00 0.00 0.00 3.18
4884 6280 7.877612 TGACTAAATACAGAGCAAAATGAGTGA 59.122 33.333 0.00 0.00 0.00 3.41
4885 6281 7.959651 GTGACTAAATACAGAGCAAAATGAGTG 59.040 37.037 0.00 0.00 0.00 3.51
4886 6282 7.880195 AGTGACTAAATACAGAGCAAAATGAGT 59.120 33.333 0.00 0.00 0.00 3.41
4887 6283 8.261492 AGTGACTAAATACAGAGCAAAATGAG 57.739 34.615 0.00 0.00 0.00 2.90
4888 6284 8.506437 CAAGTGACTAAATACAGAGCAAAATGA 58.494 33.333 0.00 0.00 0.00 2.57
4889 6285 8.292448 ACAAGTGACTAAATACAGAGCAAAATG 58.708 33.333 0.00 0.00 0.00 2.32
4890 6286 8.396272 ACAAGTGACTAAATACAGAGCAAAAT 57.604 30.769 0.00 0.00 0.00 1.82
4891 6287 7.801716 ACAAGTGACTAAATACAGAGCAAAA 57.198 32.000 0.00 0.00 0.00 2.44
4892 6288 7.497579 TCAACAAGTGACTAAATACAGAGCAAA 59.502 33.333 0.00 0.00 0.00 3.68
4893 6289 6.989759 TCAACAAGTGACTAAATACAGAGCAA 59.010 34.615 0.00 0.00 0.00 3.91
4894 6290 6.521162 TCAACAAGTGACTAAATACAGAGCA 58.479 36.000 0.00 0.00 0.00 4.26
4895 6291 7.421530 TTCAACAAGTGACTAAATACAGAGC 57.578 36.000 0.00 0.00 35.39 4.09
4897 6293 9.778741 AGATTTCAACAAGTGACTAAATACAGA 57.221 29.630 0.00 0.00 35.39 3.41
4899 6295 9.778741 AGAGATTTCAACAAGTGACTAAATACA 57.221 29.630 0.00 0.00 35.39 2.29
4905 6301 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4906 6302 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4907 6303 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4908 6304 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4909 6305 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4910 6306 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4913 6309 9.342308 ACATTTGTCTTTCTAGAGATTTCAACA 57.658 29.630 0.00 0.00 0.00 3.33
4917 6313 9.617975 CCAAACATTTGTCTTTCTAGAGATTTC 57.382 33.333 3.79 0.00 36.45 2.17
4918 6314 8.579863 CCCAAACATTTGTCTTTCTAGAGATTT 58.420 33.333 3.79 0.00 36.45 2.17
4919 6315 7.944554 TCCCAAACATTTGTCTTTCTAGAGATT 59.055 33.333 3.79 0.00 36.45 2.40
4920 6316 7.461749 TCCCAAACATTTGTCTTTCTAGAGAT 58.538 34.615 3.79 0.00 36.45 2.75
4921 6317 6.837312 TCCCAAACATTTGTCTTTCTAGAGA 58.163 36.000 3.79 0.00 36.45 3.10
4922 6318 7.363431 GTTCCCAAACATTTGTCTTTCTAGAG 58.637 38.462 3.79 0.00 36.45 2.43
4923 6319 6.017440 CGTTCCCAAACATTTGTCTTTCTAGA 60.017 38.462 3.79 0.00 36.45 2.43
4924 6320 6.142817 CGTTCCCAAACATTTGTCTTTCTAG 58.857 40.000 3.79 0.00 36.45 2.43
4925 6321 5.009210 CCGTTCCCAAACATTTGTCTTTCTA 59.991 40.000 3.79 0.00 36.45 2.10
4926 6322 4.202111 CCGTTCCCAAACATTTGTCTTTCT 60.202 41.667 3.79 0.00 36.45 2.52
4927 6323 4.048504 CCGTTCCCAAACATTTGTCTTTC 58.951 43.478 3.79 0.00 36.45 2.62
4928 6324 3.702045 TCCGTTCCCAAACATTTGTCTTT 59.298 39.130 3.79 0.00 36.45 2.52
4929 6325 3.292460 TCCGTTCCCAAACATTTGTCTT 58.708 40.909 3.79 0.00 36.45 3.01
4930 6326 2.884639 CTCCGTTCCCAAACATTTGTCT 59.115 45.455 3.79 0.00 36.45 3.41
4931 6327 2.030274 CCTCCGTTCCCAAACATTTGTC 60.030 50.000 3.79 0.00 36.45 3.18
4932 6328 1.960689 CCTCCGTTCCCAAACATTTGT 59.039 47.619 3.79 0.00 36.45 2.83
4933 6329 1.272212 CCCTCCGTTCCCAAACATTTG 59.728 52.381 0.00 0.00 34.93 2.32
4934 6330 1.146152 TCCCTCCGTTCCCAAACATTT 59.854 47.619 0.00 0.00 34.93 2.32
4935 6331 0.774908 TCCCTCCGTTCCCAAACATT 59.225 50.000 0.00 0.00 34.93 2.71
4936 6332 0.328258 CTCCCTCCGTTCCCAAACAT 59.672 55.000 0.00 0.00 34.93 2.71
4937 6333 1.057851 ACTCCCTCCGTTCCCAAACA 61.058 55.000 0.00 0.00 34.93 2.83
4938 6334 0.978907 TACTCCCTCCGTTCCCAAAC 59.021 55.000 0.00 0.00 0.00 2.93
4939 6335 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
4940 6336 0.616679 CCTACTCCCTCCGTTCCCAA 60.617 60.000 0.00 0.00 0.00 4.12
4941 6337 1.001248 CCTACTCCCTCCGTTCCCA 59.999 63.158 0.00 0.00 0.00 4.37
4942 6338 1.001376 ACCTACTCCCTCCGTTCCC 59.999 63.158 0.00 0.00 0.00 3.97
4943 6339 0.324091 TCACCTACTCCCTCCGTTCC 60.324 60.000 0.00 0.00 0.00 3.62
4944 6340 0.816373 GTCACCTACTCCCTCCGTTC 59.184 60.000 0.00 0.00 0.00 3.95
4945 6341 0.113776 TGTCACCTACTCCCTCCGTT 59.886 55.000 0.00 0.00 0.00 4.44
4946 6342 0.611340 GTGTCACCTACTCCCTCCGT 60.611 60.000 0.00 0.00 0.00 4.69
4947 6343 0.611062 TGTGTCACCTACTCCCTCCG 60.611 60.000 0.00 0.00 0.00 4.63
4948 6344 1.757699 GATGTGTCACCTACTCCCTCC 59.242 57.143 0.00 0.00 0.00 4.30
4949 6345 1.757699 GGATGTGTCACCTACTCCCTC 59.242 57.143 0.00 0.00 0.00 4.30
4950 6346 1.078823 TGGATGTGTCACCTACTCCCT 59.921 52.381 0.00 0.00 0.00 4.20
4951 6347 1.568504 TGGATGTGTCACCTACTCCC 58.431 55.000 0.00 0.00 0.00 4.30
4952 6348 2.567615 AGTTGGATGTGTCACCTACTCC 59.432 50.000 0.00 2.69 37.62 3.85
4953 6349 3.258372 TCAGTTGGATGTGTCACCTACTC 59.742 47.826 0.00 0.00 39.40 2.59
4954 6350 3.006967 GTCAGTTGGATGTGTCACCTACT 59.993 47.826 0.00 0.00 41.31 2.57
4955 6351 3.244078 TGTCAGTTGGATGTGTCACCTAC 60.244 47.826 0.00 0.00 33.49 3.18
4959 6355 3.003689 CCTTTGTCAGTTGGATGTGTCAC 59.996 47.826 0.00 0.00 0.00 3.67
5012 6408 4.344102 CGAGGTGGGACAATATAAGGAGAA 59.656 45.833 0.00 0.00 44.16 2.87
5083 6479 8.730680 CCCAAATATGCCATATAGTAACTTGAC 58.269 37.037 0.00 0.00 0.00 3.18
5088 6484 6.318900 GCCTCCCAAATATGCCATATAGTAAC 59.681 42.308 0.00 0.00 0.00 2.50
5089 6485 6.423182 GCCTCCCAAATATGCCATATAGTAA 58.577 40.000 0.00 0.00 0.00 2.24
5090 6486 5.396324 CGCCTCCCAAATATGCCATATAGTA 60.396 44.000 0.00 0.00 0.00 1.82
5091 6487 4.626287 CGCCTCCCAAATATGCCATATAGT 60.626 45.833 0.00 0.00 0.00 2.12
5092 6488 3.879295 CGCCTCCCAAATATGCCATATAG 59.121 47.826 0.00 0.00 0.00 1.31
5093 6489 3.884895 CGCCTCCCAAATATGCCATATA 58.115 45.455 0.00 0.00 0.00 0.86
5094 6490 2.726821 CGCCTCCCAAATATGCCATAT 58.273 47.619 0.00 0.00 0.00 1.78
5095 6491 1.886222 GCGCCTCCCAAATATGCCATA 60.886 52.381 0.00 0.00 0.00 2.74
5096 6492 1.181098 GCGCCTCCCAAATATGCCAT 61.181 55.000 0.00 0.00 0.00 4.40
5097 6493 1.827789 GCGCCTCCCAAATATGCCA 60.828 57.895 0.00 0.00 0.00 4.92
5098 6494 2.908073 CGCGCCTCCCAAATATGCC 61.908 63.158 0.00 0.00 0.00 4.40
5099 6495 2.639286 CGCGCCTCCCAAATATGC 59.361 61.111 0.00 0.00 0.00 3.14
5100 6496 0.817634 TTCCGCGCCTCCCAAATATG 60.818 55.000 0.00 0.00 0.00 1.78
5101 6497 0.818040 GTTCCGCGCCTCCCAAATAT 60.818 55.000 0.00 0.00 0.00 1.28
5102 6498 1.450669 GTTCCGCGCCTCCCAAATA 60.451 57.895 0.00 0.00 0.00 1.40
5103 6499 2.750237 GTTCCGCGCCTCCCAAAT 60.750 61.111 0.00 0.00 0.00 2.32
5104 6500 3.894547 GAGTTCCGCGCCTCCCAAA 62.895 63.158 0.00 0.00 0.00 3.28
5105 6501 4.388499 GAGTTCCGCGCCTCCCAA 62.388 66.667 0.00 0.00 0.00 4.12
5107 6503 4.821589 CAGAGTTCCGCGCCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
5108 6504 3.591254 AACAGAGTTCCGCGCCTCC 62.591 63.158 0.00 0.00 0.00 4.30
5109 6505 2.048127 AACAGAGTTCCGCGCCTC 60.048 61.111 0.00 5.51 0.00 4.70
5110 6506 2.048127 GAACAGAGTTCCGCGCCT 60.048 61.111 0.00 0.00 0.00 5.52
5111 6507 3.479269 CGAACAGAGTTCCGCGCC 61.479 66.667 0.00 0.00 0.00 6.53
5112 6508 3.479269 CCGAACAGAGTTCCGCGC 61.479 66.667 0.00 0.00 0.00 6.86
5113 6509 1.372499 TTCCGAACAGAGTTCCGCG 60.372 57.895 0.00 0.00 0.00 6.46
5114 6510 0.599204 TGTTCCGAACAGAGTTCCGC 60.599 55.000 9.99 0.00 36.25 5.54
5115 6511 1.860676 TTGTTCCGAACAGAGTTCCG 58.139 50.000 13.51 0.00 43.27 4.30
5116 6512 3.399330 TCATTGTTCCGAACAGAGTTCC 58.601 45.455 13.51 0.00 43.27 3.62
5117 6513 4.750098 TCTTCATTGTTCCGAACAGAGTTC 59.250 41.667 13.51 0.00 43.27 3.01
5118 6514 4.703897 TCTTCATTGTTCCGAACAGAGTT 58.296 39.130 13.51 0.00 43.27 3.01
5119 6515 4.336889 TCTTCATTGTTCCGAACAGAGT 57.663 40.909 13.51 2.68 43.27 3.24
5120 6516 4.931601 TCATCTTCATTGTTCCGAACAGAG 59.068 41.667 13.51 10.48 43.27 3.35
5121 6517 4.893608 TCATCTTCATTGTTCCGAACAGA 58.106 39.130 13.51 8.09 43.27 3.41
5122 6518 4.436584 GCTCATCTTCATTGTTCCGAACAG 60.437 45.833 13.51 4.36 43.27 3.16
5123 6519 3.436704 GCTCATCTTCATTGTTCCGAACA 59.563 43.478 9.99 9.99 40.21 3.18
5124 6520 3.181506 GGCTCATCTTCATTGTTCCGAAC 60.182 47.826 4.18 4.18 0.00 3.95
5125 6521 3.009723 GGCTCATCTTCATTGTTCCGAA 58.990 45.455 0.00 0.00 0.00 4.30
5126 6522 2.027285 TGGCTCATCTTCATTGTTCCGA 60.027 45.455 0.00 0.00 0.00 4.55
5127 6523 2.358957 TGGCTCATCTTCATTGTTCCG 58.641 47.619 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.