Multiple sequence alignment - TraesCS7D01G340900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G340900 chr7D 100.000 5708 0 0 1 5708 436741420 436735713 0.000000e+00 10541
1 TraesCS7D01G340900 chr7B 94.062 5221 203 49 416 5558 453153709 453148518 0.000000e+00 7825
2 TraesCS7D01G340900 chr7B 79.048 315 40 10 104 411 453208721 453208426 5.840000e-45 193
3 TraesCS7D01G340900 chr7B 87.898 157 18 1 5553 5708 453148247 453148091 3.510000e-42 183
4 TraesCS7D01G340900 chr7A 94.091 5111 199 41 622 5692 486141991 486147038 0.000000e+00 7670
5 TraesCS7D01G340900 chr7A 93.846 65 4 0 1214 1278 527945185 527945121 1.310000e-16 99
6 TraesCS7D01G340900 chr1D 81.220 410 73 3 3584 3991 165203033 165203440 1.530000e-85 327
7 TraesCS7D01G340900 chr1B 81.188 404 72 3 3590 3991 246769236 246768835 7.130000e-84 322
8 TraesCS7D01G340900 chr2A 84.295 312 39 8 297 600 745560862 745560553 4.320000e-76 296
9 TraesCS7D01G340900 chr2A 83.113 302 42 7 307 600 765803730 765804030 3.390000e-67 267
10 TraesCS7D01G340900 chr5A 82.353 306 43 6 304 600 617979066 617979369 7.340000e-64 255
11 TraesCS7D01G340900 chr2D 80.519 308 50 8 302 600 425250635 425250941 1.600000e-55 228
12 TraesCS7D01G340900 chr6B 80.392 306 48 10 305 600 345205049 345204746 7.440000e-54 222
13 TraesCS7D01G340900 chr4A 78.947 304 51 10 306 600 144841602 144841303 1.620000e-45 195
14 TraesCS7D01G340900 chr4A 81.385 231 34 6 375 597 642908139 642908368 4.540000e-41 180
15 TraesCS7D01G340900 chr3A 78.322 286 47 12 323 599 484110189 484110468 2.730000e-38 171
16 TraesCS7D01G340900 chr3A 95.385 65 3 0 1214 1278 155431475 155431411 2.810000e-18 104
17 TraesCS7D01G340900 chr6D 76.238 303 52 13 307 600 16937632 16937341 5.960000e-30 143
18 TraesCS7D01G340900 chr6D 86.957 115 15 0 103 217 368370571 368370457 4.640000e-26 130
19 TraesCS7D01G340900 chr3D 95.385 65 3 0 1214 1278 137487805 137487741 2.810000e-18 104
20 TraesCS7D01G340900 chr3B 95.385 65 3 0 1214 1278 200875403 200875339 2.810000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G340900 chr7D 436735713 436741420 5707 True 10541 10541 100.000 1 5708 1 chr7D.!!$R1 5707
1 TraesCS7D01G340900 chr7B 453148091 453153709 5618 True 4004 7825 90.980 416 5708 2 chr7B.!!$R2 5292
2 TraesCS7D01G340900 chr7A 486141991 486147038 5047 False 7670 7670 94.091 622 5692 1 chr7A.!!$F1 5070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.386478 GTACCTGACGTTCGAGCGTT 60.386 55.000 27.76 14.72 45.79 4.84 F
473 474 0.393820 TTTAACGTCCGCTCCAACCT 59.606 50.000 0.00 0.00 0.00 3.50 F
799 833 1.134220 ACACGCCAGGAAAGAAGAACA 60.134 47.619 0.00 0.00 0.00 3.18 F
2084 2147 0.999406 CGATGTCCTTGCTAACCACG 59.001 55.000 0.00 0.00 0.00 4.94 F
2516 2586 4.568152 AGTGTGGAAACCAATTCTTTCG 57.432 40.909 0.00 0.00 38.18 3.46 F
2997 3074 5.895636 TGTCTTGAACATGTGAAGTGTTT 57.104 34.783 14.50 0.00 39.72 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2116 1.068741 AGGACATCGGTCGATAAAGCC 59.931 52.381 5.50 5.47 45.28 4.35 R
2064 2127 1.369625 GTGGTTAGCAAGGACATCGG 58.630 55.000 0.00 0.00 0.00 4.18 R
2166 2233 2.756840 TGCTCATCAGTCACCAAGAG 57.243 50.000 0.00 0.00 0.00 2.85 R
3130 3207 2.356278 GCCCATCTGGAAGGCACA 59.644 61.111 0.00 0.00 46.34 4.57 R
4184 4264 4.877323 GTTGGAAACGTTCTGAAAGACT 57.123 40.909 10.28 0.00 39.45 3.24 R
4919 5001 1.302033 CAGGACACAGACCAGGCAC 60.302 63.158 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.989279 GCAATGATATCCCAACAGTGTT 57.011 40.909 1.64 1.64 33.23 3.32
22 23 5.329035 GCAATGATATCCCAACAGTGTTT 57.671 39.130 5.57 0.00 33.23 2.83
23 24 6.449635 GCAATGATATCCCAACAGTGTTTA 57.550 37.500 5.57 0.00 33.23 2.01
24 25 6.862209 GCAATGATATCCCAACAGTGTTTAA 58.138 36.000 5.57 0.00 33.23 1.52
25 26 6.974622 GCAATGATATCCCAACAGTGTTTAAG 59.025 38.462 5.57 0.00 33.23 1.85
26 27 7.483307 CAATGATATCCCAACAGTGTTTAAGG 58.517 38.462 5.57 7.90 0.00 2.69
27 28 6.381498 TGATATCCCAACAGTGTTTAAGGA 57.619 37.500 17.32 17.32 0.00 3.36
28 29 6.785076 TGATATCCCAACAGTGTTTAAGGAA 58.215 36.000 18.40 11.06 0.00 3.36
29 30 7.235079 TGATATCCCAACAGTGTTTAAGGAAA 58.765 34.615 18.40 6.03 0.00 3.13
30 31 7.393234 TGATATCCCAACAGTGTTTAAGGAAAG 59.607 37.037 18.40 1.97 0.00 2.62
31 32 4.862371 TCCCAACAGTGTTTAAGGAAAGT 58.138 39.130 5.57 0.00 0.00 2.66
32 33 5.265989 TCCCAACAGTGTTTAAGGAAAGTT 58.734 37.500 5.57 0.00 0.00 2.66
33 34 5.126384 TCCCAACAGTGTTTAAGGAAAGTTG 59.874 40.000 5.57 0.00 35.97 3.16
34 35 4.803613 CCAACAGTGTTTAAGGAAAGTTGC 59.196 41.667 5.57 0.00 35.15 4.17
35 36 5.406649 CAACAGTGTTTAAGGAAAGTTGCA 58.593 37.500 5.57 0.00 0.00 4.08
36 37 5.852282 ACAGTGTTTAAGGAAAGTTGCAT 57.148 34.783 0.00 0.00 0.00 3.96
37 38 6.220726 ACAGTGTTTAAGGAAAGTTGCATT 57.779 33.333 0.00 0.00 0.00 3.56
38 39 6.042143 ACAGTGTTTAAGGAAAGTTGCATTG 58.958 36.000 0.00 0.00 0.00 2.82
39 40 6.127479 ACAGTGTTTAAGGAAAGTTGCATTGA 60.127 34.615 0.00 0.00 0.00 2.57
40 41 6.756074 CAGTGTTTAAGGAAAGTTGCATTGAA 59.244 34.615 0.00 0.00 0.00 2.69
41 42 7.439056 CAGTGTTTAAGGAAAGTTGCATTGAAT 59.561 33.333 0.00 0.00 0.00 2.57
42 43 7.653311 AGTGTTTAAGGAAAGTTGCATTGAATC 59.347 33.333 0.00 0.00 0.00 2.52
43 44 6.928492 TGTTTAAGGAAAGTTGCATTGAATCC 59.072 34.615 0.00 0.00 0.00 3.01
44 45 6.662865 TTAAGGAAAGTTGCATTGAATCCA 57.337 33.333 8.27 0.00 0.00 3.41
45 46 5.750352 AAGGAAAGTTGCATTGAATCCAT 57.250 34.783 8.27 0.00 0.00 3.41
46 47 5.334724 AGGAAAGTTGCATTGAATCCATC 57.665 39.130 8.27 0.00 0.00 3.51
47 48 5.021458 AGGAAAGTTGCATTGAATCCATCT 58.979 37.500 8.27 0.00 0.00 2.90
48 49 5.105473 AGGAAAGTTGCATTGAATCCATCTG 60.105 40.000 8.27 0.00 0.00 2.90
49 50 5.105635 GGAAAGTTGCATTGAATCCATCTGA 60.106 40.000 0.00 0.00 0.00 3.27
50 51 5.578005 AAGTTGCATTGAATCCATCTGAG 57.422 39.130 0.00 0.00 0.00 3.35
51 52 3.380637 AGTTGCATTGAATCCATCTGAGC 59.619 43.478 0.00 0.00 0.00 4.26
52 53 2.304092 TGCATTGAATCCATCTGAGCC 58.696 47.619 0.00 0.00 0.00 4.70
53 54 2.092049 TGCATTGAATCCATCTGAGCCT 60.092 45.455 0.00 0.00 0.00 4.58
54 55 2.293677 GCATTGAATCCATCTGAGCCTG 59.706 50.000 0.00 0.00 0.00 4.85
55 56 2.723322 TTGAATCCATCTGAGCCTGG 57.277 50.000 0.00 0.00 0.00 4.45
56 57 1.588239 TGAATCCATCTGAGCCTGGT 58.412 50.000 0.00 0.00 34.03 4.00
57 58 1.211212 TGAATCCATCTGAGCCTGGTG 59.789 52.381 0.00 0.00 34.03 4.17
58 59 1.487976 GAATCCATCTGAGCCTGGTGA 59.512 52.381 0.00 0.00 34.03 4.02
59 60 1.817087 ATCCATCTGAGCCTGGTGAT 58.183 50.000 0.00 0.00 34.03 3.06
60 61 1.588239 TCCATCTGAGCCTGGTGATT 58.412 50.000 0.00 0.00 34.03 2.57
61 62 1.918262 TCCATCTGAGCCTGGTGATTT 59.082 47.619 0.00 0.00 34.03 2.17
62 63 3.114606 TCCATCTGAGCCTGGTGATTTA 58.885 45.455 0.00 0.00 34.03 1.40
63 64 3.718434 TCCATCTGAGCCTGGTGATTTAT 59.282 43.478 0.00 0.00 34.03 1.40
64 65 4.070716 CCATCTGAGCCTGGTGATTTATC 58.929 47.826 0.00 0.00 0.00 1.75
65 66 4.445305 CCATCTGAGCCTGGTGATTTATCA 60.445 45.833 0.00 0.00 0.00 2.15
66 67 4.412796 TCTGAGCCTGGTGATTTATCAG 57.587 45.455 0.00 0.00 37.51 2.90
81 82 9.049523 GTGATTTATCAGCAGACATATTCTTGA 57.950 33.333 0.00 0.00 37.51 3.02
82 83 9.049523 TGATTTATCAGCAGACATATTCTTGAC 57.950 33.333 0.00 0.00 29.30 3.18
83 84 7.792374 TTTATCAGCAGACATATTCTTGACC 57.208 36.000 0.00 0.00 28.96 4.02
84 85 3.785486 TCAGCAGACATATTCTTGACCG 58.215 45.455 0.00 0.00 28.96 4.79
85 86 2.286294 CAGCAGACATATTCTTGACCGC 59.714 50.000 0.00 0.00 28.96 5.68
86 87 1.599542 GCAGACATATTCTTGACCGCC 59.400 52.381 0.00 0.00 28.96 6.13
87 88 2.743183 GCAGACATATTCTTGACCGCCT 60.743 50.000 0.00 0.00 28.96 5.52
88 89 3.535561 CAGACATATTCTTGACCGCCTT 58.464 45.455 0.00 0.00 28.96 4.35
89 90 3.310774 CAGACATATTCTTGACCGCCTTG 59.689 47.826 0.00 0.00 28.96 3.61
90 91 3.055094 AGACATATTCTTGACCGCCTTGT 60.055 43.478 0.00 0.00 0.00 3.16
91 92 3.686016 ACATATTCTTGACCGCCTTGTT 58.314 40.909 0.00 0.00 0.00 2.83
92 93 4.079253 ACATATTCTTGACCGCCTTGTTT 58.921 39.130 0.00 0.00 0.00 2.83
93 94 5.250200 ACATATTCTTGACCGCCTTGTTTA 58.750 37.500 0.00 0.00 0.00 2.01
94 95 5.885912 ACATATTCTTGACCGCCTTGTTTAT 59.114 36.000 0.00 0.00 0.00 1.40
95 96 6.377146 ACATATTCTTGACCGCCTTGTTTATT 59.623 34.615 0.00 0.00 0.00 1.40
96 97 5.722021 ATTCTTGACCGCCTTGTTTATTT 57.278 34.783 0.00 0.00 0.00 1.40
97 98 4.759516 TCTTGACCGCCTTGTTTATTTC 57.240 40.909 0.00 0.00 0.00 2.17
98 99 4.138290 TCTTGACCGCCTTGTTTATTTCA 58.862 39.130 0.00 0.00 0.00 2.69
99 100 3.907894 TGACCGCCTTGTTTATTTCAC 57.092 42.857 0.00 0.00 0.00 3.18
100 101 3.215151 TGACCGCCTTGTTTATTTCACA 58.785 40.909 0.00 0.00 0.00 3.58
101 102 3.823873 TGACCGCCTTGTTTATTTCACAT 59.176 39.130 0.00 0.00 0.00 3.21
102 103 4.165779 GACCGCCTTGTTTATTTCACATG 58.834 43.478 0.00 0.00 0.00 3.21
103 104 3.823873 ACCGCCTTGTTTATTTCACATGA 59.176 39.130 0.00 0.00 0.00 3.07
104 105 4.279671 ACCGCCTTGTTTATTTCACATGAA 59.720 37.500 0.00 0.00 0.00 2.57
105 106 4.858692 CCGCCTTGTTTATTTCACATGAAG 59.141 41.667 0.00 0.00 35.21 3.02
106 107 5.460646 CGCCTTGTTTATTTCACATGAAGT 58.539 37.500 0.00 0.00 35.21 3.01
107 108 5.920273 CGCCTTGTTTATTTCACATGAAGTT 59.080 36.000 0.00 0.00 35.21 2.66
108 109 6.129115 CGCCTTGTTTATTTCACATGAAGTTG 60.129 38.462 0.00 0.00 35.21 3.16
109 110 6.701400 GCCTTGTTTATTTCACATGAAGTTGT 59.299 34.615 0.00 0.00 35.21 3.32
110 111 7.224557 GCCTTGTTTATTTCACATGAAGTTGTT 59.775 33.333 0.00 0.00 35.21 2.83
111 112 9.743057 CCTTGTTTATTTCACATGAAGTTGTTA 57.257 29.630 0.00 0.00 35.21 2.41
114 115 9.190858 TGTTTATTTCACATGAAGTTGTTATGC 57.809 29.630 0.00 0.00 35.21 3.14
115 116 9.410556 GTTTATTTCACATGAAGTTGTTATGCT 57.589 29.630 0.00 0.00 35.21 3.79
116 117 9.979578 TTTATTTCACATGAAGTTGTTATGCTT 57.020 25.926 0.00 0.00 35.21 3.91
117 118 7.878477 ATTTCACATGAAGTTGTTATGCTTG 57.122 32.000 0.00 0.00 35.21 4.01
118 119 4.797471 TCACATGAAGTTGTTATGCTTGC 58.203 39.130 0.00 0.00 0.00 4.01
119 120 3.922240 CACATGAAGTTGTTATGCTTGCC 59.078 43.478 0.00 0.00 0.00 4.52
120 121 3.573538 ACATGAAGTTGTTATGCTTGCCA 59.426 39.130 0.00 0.00 0.00 4.92
121 122 4.039004 ACATGAAGTTGTTATGCTTGCCAA 59.961 37.500 0.00 0.00 0.00 4.52
122 123 3.976169 TGAAGTTGTTATGCTTGCCAAC 58.024 40.909 7.64 7.64 37.93 3.77
123 124 3.636300 TGAAGTTGTTATGCTTGCCAACT 59.364 39.130 10.84 10.84 46.92 3.16
124 125 4.824537 TGAAGTTGTTATGCTTGCCAACTA 59.175 37.500 14.75 2.73 44.88 2.24
125 126 5.300539 TGAAGTTGTTATGCTTGCCAACTAA 59.699 36.000 14.75 7.65 44.88 2.24
126 127 5.782893 AGTTGTTATGCTTGCCAACTAAA 57.217 34.783 13.52 0.00 44.08 1.85
127 128 6.155475 AGTTGTTATGCTTGCCAACTAAAA 57.845 33.333 13.52 0.00 44.08 1.52
128 129 6.758254 AGTTGTTATGCTTGCCAACTAAAAT 58.242 32.000 13.52 0.00 44.08 1.82
129 130 7.216494 AGTTGTTATGCTTGCCAACTAAAATT 58.784 30.769 13.52 0.00 44.08 1.82
130 131 7.171337 AGTTGTTATGCTTGCCAACTAAAATTG 59.829 33.333 13.52 0.00 44.08 2.32
131 132 6.520272 TGTTATGCTTGCCAACTAAAATTGT 58.480 32.000 8.09 0.00 0.00 2.71
132 133 6.644592 TGTTATGCTTGCCAACTAAAATTGTC 59.355 34.615 8.09 0.00 0.00 3.18
133 134 4.662468 TGCTTGCCAACTAAAATTGTCA 57.338 36.364 0.00 0.00 0.00 3.58
134 135 5.212532 TGCTTGCCAACTAAAATTGTCAT 57.787 34.783 0.00 0.00 0.00 3.06
135 136 5.229423 TGCTTGCCAACTAAAATTGTCATC 58.771 37.500 0.00 0.00 0.00 2.92
136 137 5.010922 TGCTTGCCAACTAAAATTGTCATCT 59.989 36.000 0.00 0.00 0.00 2.90
137 138 5.928264 GCTTGCCAACTAAAATTGTCATCTT 59.072 36.000 0.00 0.00 0.00 2.40
138 139 6.089954 GCTTGCCAACTAAAATTGTCATCTTC 59.910 38.462 0.00 0.00 0.00 2.87
139 140 5.698832 TGCCAACTAAAATTGTCATCTTCG 58.301 37.500 0.00 0.00 0.00 3.79
140 141 5.471797 TGCCAACTAAAATTGTCATCTTCGA 59.528 36.000 0.00 0.00 0.00 3.71
141 142 6.024049 GCCAACTAAAATTGTCATCTTCGAG 58.976 40.000 0.00 0.00 0.00 4.04
142 143 6.348540 GCCAACTAAAATTGTCATCTTCGAGT 60.349 38.462 0.00 0.00 0.00 4.18
143 144 7.237173 CCAACTAAAATTGTCATCTTCGAGTC 58.763 38.462 0.00 0.00 0.00 3.36
144 145 6.633668 ACTAAAATTGTCATCTTCGAGTCG 57.366 37.500 6.09 6.09 0.00 4.18
145 146 3.999229 AAATTGTCATCTTCGAGTCGC 57.001 42.857 7.92 0.00 0.00 5.19
146 147 2.949451 ATTGTCATCTTCGAGTCGCT 57.051 45.000 7.92 0.00 0.00 4.93
147 148 4.371855 AATTGTCATCTTCGAGTCGCTA 57.628 40.909 7.92 0.00 0.00 4.26
148 149 3.842732 TTGTCATCTTCGAGTCGCTAA 57.157 42.857 7.92 0.00 0.00 3.09
149 150 3.842732 TGTCATCTTCGAGTCGCTAAA 57.157 42.857 7.92 0.00 0.00 1.85
150 151 3.499048 TGTCATCTTCGAGTCGCTAAAC 58.501 45.455 7.92 1.98 0.00 2.01
151 152 3.190744 TGTCATCTTCGAGTCGCTAAACT 59.809 43.478 7.92 0.00 0.00 2.66
152 153 4.167268 GTCATCTTCGAGTCGCTAAACTT 58.833 43.478 7.92 0.00 0.00 2.66
153 154 4.030753 GTCATCTTCGAGTCGCTAAACTTG 59.969 45.833 7.92 0.00 32.73 3.16
154 155 2.325761 TCTTCGAGTCGCTAAACTTGC 58.674 47.619 7.92 0.00 31.69 4.01
164 165 3.992840 GCTAAACTTGCGAACGAAAAC 57.007 42.857 0.00 0.00 0.00 2.43
165 166 2.396185 GCTAAACTTGCGAACGAAAACG 59.604 45.455 0.00 0.00 0.00 3.60
166 167 2.530832 AAACTTGCGAACGAAAACGT 57.469 40.000 0.00 0.00 0.00 3.99
167 168 2.530832 AACTTGCGAACGAAAACGTT 57.469 40.000 7.69 7.69 34.52 3.99
168 169 2.081336 ACTTGCGAACGAAAACGTTC 57.919 45.000 20.49 20.49 43.19 3.95
193 194 2.945315 CGATGTGCTCGTACCTGAC 58.055 57.895 0.00 0.00 42.56 3.51
201 202 4.053067 CGTACCTGACGTTCGAGC 57.947 61.111 0.00 0.00 46.86 5.03
202 203 1.862147 CGTACCTGACGTTCGAGCG 60.862 63.158 20.50 20.50 46.86 5.03
203 204 2.504461 CGTACCTGACGTTCGAGCGT 62.504 60.000 27.47 27.47 46.86 5.07
204 205 0.386478 GTACCTGACGTTCGAGCGTT 60.386 55.000 27.76 14.72 45.79 4.84
205 206 1.135972 GTACCTGACGTTCGAGCGTTA 60.136 52.381 27.76 22.45 45.79 3.18
206 207 0.524862 ACCTGACGTTCGAGCGTTAT 59.475 50.000 27.76 7.79 45.79 1.89
207 208 1.189403 CCTGACGTTCGAGCGTTATC 58.811 55.000 27.76 15.88 45.79 1.75
208 209 1.466866 CCTGACGTTCGAGCGTTATCA 60.467 52.381 27.76 19.38 45.79 2.15
209 210 1.840741 CTGACGTTCGAGCGTTATCAG 59.159 52.381 27.76 23.98 45.79 2.90
210 211 1.465777 TGACGTTCGAGCGTTATCAGA 59.534 47.619 27.76 6.18 45.79 3.27
211 212 2.096980 TGACGTTCGAGCGTTATCAGAT 59.903 45.455 27.76 2.57 45.79 2.90
212 213 3.106672 GACGTTCGAGCGTTATCAGATT 58.893 45.455 27.76 1.78 45.79 2.40
213 214 3.106672 ACGTTCGAGCGTTATCAGATTC 58.893 45.455 22.04 0.00 43.04 2.52
214 215 2.468040 CGTTCGAGCGTTATCAGATTCC 59.532 50.000 13.95 0.00 0.00 3.01
215 216 3.707793 GTTCGAGCGTTATCAGATTCCT 58.292 45.455 0.00 0.00 0.00 3.36
216 217 4.113354 GTTCGAGCGTTATCAGATTCCTT 58.887 43.478 0.00 0.00 0.00 3.36
217 218 5.279384 GTTCGAGCGTTATCAGATTCCTTA 58.721 41.667 0.00 0.00 0.00 2.69
218 219 5.109662 TCGAGCGTTATCAGATTCCTTAG 57.890 43.478 0.00 0.00 0.00 2.18
219 220 4.820173 TCGAGCGTTATCAGATTCCTTAGA 59.180 41.667 0.00 0.00 0.00 2.10
220 221 5.473846 TCGAGCGTTATCAGATTCCTTAGAT 59.526 40.000 0.00 0.00 0.00 1.98
221 222 6.016192 TCGAGCGTTATCAGATTCCTTAGATT 60.016 38.462 0.00 0.00 0.00 2.40
222 223 7.174426 TCGAGCGTTATCAGATTCCTTAGATTA 59.826 37.037 0.00 0.00 0.00 1.75
223 224 7.808381 CGAGCGTTATCAGATTCCTTAGATTAA 59.192 37.037 0.00 0.00 0.00 1.40
224 225 8.819643 AGCGTTATCAGATTCCTTAGATTAAC 57.180 34.615 0.00 0.00 0.00 2.01
225 226 7.873505 AGCGTTATCAGATTCCTTAGATTAACC 59.126 37.037 0.00 0.00 0.00 2.85
226 227 7.148787 GCGTTATCAGATTCCTTAGATTAACCG 60.149 40.741 0.00 0.00 0.00 4.44
227 228 7.328737 CGTTATCAGATTCCTTAGATTAACCGG 59.671 40.741 0.00 0.00 0.00 5.28
228 229 6.749036 ATCAGATTCCTTAGATTAACCGGT 57.251 37.500 0.00 0.00 0.00 5.28
229 230 6.555463 TCAGATTCCTTAGATTAACCGGTT 57.445 37.500 25.64 25.64 0.00 4.44
230 231 6.954232 TCAGATTCCTTAGATTAACCGGTTT 58.046 36.000 27.64 8.51 0.00 3.27
231 232 7.046033 TCAGATTCCTTAGATTAACCGGTTTC 58.954 38.462 27.64 18.10 0.00 2.78
232 233 7.048512 CAGATTCCTTAGATTAACCGGTTTCT 58.951 38.462 27.64 24.22 0.00 2.52
233 234 7.011482 CAGATTCCTTAGATTAACCGGTTTCTG 59.989 40.741 27.64 21.56 0.00 3.02
234 235 5.093849 TCCTTAGATTAACCGGTTTCTGG 57.906 43.478 27.64 19.64 0.00 3.86
235 236 4.778958 TCCTTAGATTAACCGGTTTCTGGA 59.221 41.667 27.64 21.45 0.00 3.86
236 237 5.427481 TCCTTAGATTAACCGGTTTCTGGAT 59.573 40.000 27.64 11.84 0.00 3.41
237 238 6.612456 TCCTTAGATTAACCGGTTTCTGGATA 59.388 38.462 27.64 5.14 0.00 2.59
238 239 6.929606 CCTTAGATTAACCGGTTTCTGGATAG 59.070 42.308 27.64 16.77 0.00 2.08
239 240 4.704965 AGATTAACCGGTTTCTGGATAGC 58.295 43.478 27.64 5.48 0.00 2.97
240 241 3.985019 TTAACCGGTTTCTGGATAGCA 57.015 42.857 27.64 0.00 0.00 3.49
241 242 2.871096 AACCGGTTTCTGGATAGCAA 57.129 45.000 15.86 0.00 0.00 3.91
242 243 2.109425 ACCGGTTTCTGGATAGCAAC 57.891 50.000 0.00 0.00 30.53 4.17
243 244 1.006832 CCGGTTTCTGGATAGCAACG 58.993 55.000 0.00 0.00 31.85 4.10
244 245 1.404986 CCGGTTTCTGGATAGCAACGA 60.405 52.381 0.00 0.00 31.85 3.85
245 246 2.343101 CGGTTTCTGGATAGCAACGAA 58.657 47.619 0.00 0.00 31.85 3.85
246 247 2.936498 CGGTTTCTGGATAGCAACGAAT 59.064 45.455 0.00 0.00 31.85 3.34
247 248 3.374058 CGGTTTCTGGATAGCAACGAATT 59.626 43.478 0.00 0.00 31.85 2.17
248 249 4.662145 GGTTTCTGGATAGCAACGAATTG 58.338 43.478 0.00 0.00 38.99 2.32
249 250 4.438744 GGTTTCTGGATAGCAACGAATTGG 60.439 45.833 0.00 0.00 36.23 3.16
250 251 3.904800 TCTGGATAGCAACGAATTGGA 57.095 42.857 0.00 0.00 36.23 3.53
251 252 3.531538 TCTGGATAGCAACGAATTGGAC 58.468 45.455 0.00 0.00 36.23 4.02
252 253 3.055458 TCTGGATAGCAACGAATTGGACA 60.055 43.478 0.00 0.00 36.23 4.02
253 254 3.680490 TGGATAGCAACGAATTGGACAA 58.320 40.909 0.00 0.00 36.23 3.18
254 255 4.269183 TGGATAGCAACGAATTGGACAAT 58.731 39.130 0.00 0.00 36.23 2.71
255 256 5.432645 TGGATAGCAACGAATTGGACAATA 58.567 37.500 0.00 0.00 36.23 1.90
256 257 6.061441 TGGATAGCAACGAATTGGACAATAT 58.939 36.000 0.00 0.00 36.23 1.28
257 258 7.220740 TGGATAGCAACGAATTGGACAATATA 58.779 34.615 0.00 0.00 36.23 0.86
258 259 7.882791 TGGATAGCAACGAATTGGACAATATAT 59.117 33.333 0.00 0.00 36.23 0.86
259 260 9.378551 GGATAGCAACGAATTGGACAATATATA 57.621 33.333 0.00 0.00 36.23 0.86
262 263 8.268850 AGCAACGAATTGGACAATATATATCC 57.731 34.615 8.44 8.44 36.23 2.59
263 264 7.064609 AGCAACGAATTGGACAATATATATCCG 59.935 37.037 10.09 0.00 36.23 4.18
264 265 6.903883 ACGAATTGGACAATATATATCCGC 57.096 37.500 10.09 1.95 35.06 5.54
265 266 5.815740 ACGAATTGGACAATATATATCCGCC 59.184 40.000 10.09 0.00 35.06 6.13
266 267 5.815222 CGAATTGGACAATATATATCCGCCA 59.185 40.000 10.09 1.56 35.06 5.69
267 268 6.315144 CGAATTGGACAATATATATCCGCCAA 59.685 38.462 18.01 18.01 38.39 4.52
268 269 7.148323 CGAATTGGACAATATATATCCGCCAAA 60.148 37.037 18.92 9.23 37.65 3.28
269 270 7.630242 ATTGGACAATATATATCCGCCAAAG 57.370 36.000 18.92 0.18 37.65 2.77
270 271 6.367374 TGGACAATATATATCCGCCAAAGA 57.633 37.500 10.09 0.00 35.06 2.52
271 272 6.774673 TGGACAATATATATCCGCCAAAGAA 58.225 36.000 10.09 0.00 35.06 2.52
272 273 7.227873 TGGACAATATATATCCGCCAAAGAAA 58.772 34.615 10.09 0.00 35.06 2.52
273 274 7.721842 TGGACAATATATATCCGCCAAAGAAAA 59.278 33.333 10.09 0.00 35.06 2.29
274 275 8.573035 GGACAATATATATCCGCCAAAGAAAAA 58.427 33.333 0.00 0.00 0.00 1.94
276 277 9.912634 ACAATATATATCCGCCAAAGAAAAATG 57.087 29.630 0.00 0.00 0.00 2.32
280 281 4.599047 ATCCGCCAAAGAAAAATGAACA 57.401 36.364 0.00 0.00 0.00 3.18
281 282 4.392921 TCCGCCAAAGAAAAATGAACAA 57.607 36.364 0.00 0.00 0.00 2.83
282 283 4.954875 TCCGCCAAAGAAAAATGAACAAT 58.045 34.783 0.00 0.00 0.00 2.71
283 284 6.090483 TCCGCCAAAGAAAAATGAACAATA 57.910 33.333 0.00 0.00 0.00 1.90
284 285 6.696411 TCCGCCAAAGAAAAATGAACAATAT 58.304 32.000 0.00 0.00 0.00 1.28
285 286 7.831753 TCCGCCAAAGAAAAATGAACAATATA 58.168 30.769 0.00 0.00 0.00 0.86
286 287 8.474025 TCCGCCAAAGAAAAATGAACAATATAT 58.526 29.630 0.00 0.00 0.00 0.86
287 288 9.743057 CCGCCAAAGAAAAATGAACAATATATA 57.257 29.630 0.00 0.00 0.00 0.86
311 312 7.078249 ACATTTGAATTTTCCTTTTAGGGCT 57.922 32.000 0.00 0.00 35.59 5.19
312 313 7.161404 ACATTTGAATTTTCCTTTTAGGGCTC 58.839 34.615 0.00 0.00 35.59 4.70
313 314 6.994421 TTTGAATTTTCCTTTTAGGGCTCT 57.006 33.333 0.00 0.00 35.59 4.09
314 315 6.994421 TTGAATTTTCCTTTTAGGGCTCTT 57.006 33.333 0.00 0.00 35.59 2.85
315 316 6.994421 TGAATTTTCCTTTTAGGGCTCTTT 57.006 33.333 0.00 0.00 35.59 2.52
316 317 7.373617 TGAATTTTCCTTTTAGGGCTCTTTT 57.626 32.000 0.00 0.00 35.59 2.27
317 318 7.216494 TGAATTTTCCTTTTAGGGCTCTTTTG 58.784 34.615 0.00 0.00 35.59 2.44
318 319 6.994421 ATTTTCCTTTTAGGGCTCTTTTGA 57.006 33.333 0.00 0.00 35.59 2.69
319 320 6.994421 TTTTCCTTTTAGGGCTCTTTTGAT 57.006 33.333 0.00 0.00 35.59 2.57
320 321 6.994421 TTTCCTTTTAGGGCTCTTTTGATT 57.006 33.333 0.00 0.00 35.59 2.57
321 322 6.994421 TTCCTTTTAGGGCTCTTTTGATTT 57.006 33.333 0.00 0.00 35.59 2.17
322 323 8.485578 TTTCCTTTTAGGGCTCTTTTGATTTA 57.514 30.769 0.00 0.00 35.59 1.40
323 324 8.485578 TTCCTTTTAGGGCTCTTTTGATTTAA 57.514 30.769 0.00 0.00 35.59 1.52
324 325 8.485578 TCCTTTTAGGGCTCTTTTGATTTAAA 57.514 30.769 0.00 0.00 35.59 1.52
325 326 8.585018 TCCTTTTAGGGCTCTTTTGATTTAAAG 58.415 33.333 0.00 0.00 35.59 1.85
326 327 7.819415 CCTTTTAGGGCTCTTTTGATTTAAAGG 59.181 37.037 0.00 0.00 36.12 3.11
327 328 8.485578 TTTTAGGGCTCTTTTGATTTAAAGGA 57.514 30.769 0.00 0.00 36.12 3.36
328 329 8.485578 TTTAGGGCTCTTTTGATTTAAAGGAA 57.514 30.769 0.00 0.00 34.45 3.36
329 330 6.994421 AGGGCTCTTTTGATTTAAAGGAAA 57.006 33.333 0.00 0.00 34.45 3.13
330 331 7.559335 AGGGCTCTTTTGATTTAAAGGAAAT 57.441 32.000 0.00 0.00 40.62 2.17
359 360 7.709149 AAGATTTTTGGAAGATCGAAATCCT 57.291 32.000 13.57 0.00 37.40 3.24
360 361 7.709149 AGATTTTTGGAAGATCGAAATCCTT 57.291 32.000 13.57 4.72 37.40 3.36
361 362 8.807948 AGATTTTTGGAAGATCGAAATCCTTA 57.192 30.769 13.57 2.45 37.40 2.69
362 363 8.897752 AGATTTTTGGAAGATCGAAATCCTTAG 58.102 33.333 13.57 0.00 37.40 2.18
363 364 8.807948 ATTTTTGGAAGATCGAAATCCTTAGA 57.192 30.769 13.57 1.31 34.24 2.10
364 365 8.630054 TTTTTGGAAGATCGAAATCCTTAGAA 57.370 30.769 13.57 0.45 34.24 2.10
365 366 8.807948 TTTTGGAAGATCGAAATCCTTAGAAT 57.192 30.769 13.57 0.00 34.24 2.40
366 367 8.807948 TTTGGAAGATCGAAATCCTTAGAATT 57.192 30.769 13.57 0.00 34.24 2.17
367 368 8.807948 TTGGAAGATCGAAATCCTTAGAATTT 57.192 30.769 13.57 0.00 34.24 1.82
368 369 8.807948 TGGAAGATCGAAATCCTTAGAATTTT 57.192 30.769 13.57 0.00 34.24 1.82
369 370 9.243105 TGGAAGATCGAAATCCTTAGAATTTTT 57.757 29.630 13.57 0.00 34.24 1.94
392 393 7.873719 TTTTCTATGTTGGTTCTTTGACTCA 57.126 32.000 0.00 0.00 0.00 3.41
393 394 8.463930 TTTTCTATGTTGGTTCTTTGACTCAT 57.536 30.769 0.00 0.00 0.00 2.90
394 395 9.567776 TTTTCTATGTTGGTTCTTTGACTCATA 57.432 29.630 0.00 0.00 0.00 2.15
395 396 8.777865 TTCTATGTTGGTTCTTTGACTCATAG 57.222 34.615 0.00 0.00 36.55 2.23
396 397 7.331026 TCTATGTTGGTTCTTTGACTCATAGG 58.669 38.462 0.00 0.00 36.17 2.57
397 398 5.560722 TGTTGGTTCTTTGACTCATAGGA 57.439 39.130 0.00 0.00 0.00 2.94
398 399 6.126863 TGTTGGTTCTTTGACTCATAGGAT 57.873 37.500 0.00 0.00 0.00 3.24
399 400 6.542821 TGTTGGTTCTTTGACTCATAGGATT 58.457 36.000 0.00 0.00 0.00 3.01
400 401 6.430925 TGTTGGTTCTTTGACTCATAGGATTG 59.569 38.462 0.00 0.00 0.00 2.67
401 402 5.500234 TGGTTCTTTGACTCATAGGATTGG 58.500 41.667 0.00 0.00 0.00 3.16
402 403 5.250543 TGGTTCTTTGACTCATAGGATTGGA 59.749 40.000 0.00 0.00 0.00 3.53
403 404 6.069440 TGGTTCTTTGACTCATAGGATTGGAT 60.069 38.462 0.00 0.00 0.00 3.41
404 405 6.484977 GGTTCTTTGACTCATAGGATTGGATC 59.515 42.308 0.00 0.00 0.00 3.36
405 406 7.278875 GTTCTTTGACTCATAGGATTGGATCT 58.721 38.462 0.00 0.00 0.00 2.75
406 407 7.060383 TCTTTGACTCATAGGATTGGATCTC 57.940 40.000 0.00 0.00 0.00 2.75
407 408 6.612863 TCTTTGACTCATAGGATTGGATCTCA 59.387 38.462 0.00 0.00 0.00 3.27
408 409 7.291885 TCTTTGACTCATAGGATTGGATCTCAT 59.708 37.037 0.00 0.00 0.00 2.90
409 410 8.496534 TTTGACTCATAGGATTGGATCTCATA 57.503 34.615 0.00 0.00 0.00 2.15
410 411 7.715266 TGACTCATAGGATTGGATCTCATAG 57.285 40.000 0.00 0.00 0.00 2.23
411 412 6.666980 TGACTCATAGGATTGGATCTCATAGG 59.333 42.308 0.00 0.00 0.00 2.57
412 413 6.809428 ACTCATAGGATTGGATCTCATAGGA 58.191 40.000 0.00 0.00 0.00 2.94
413 414 7.251936 ACTCATAGGATTGGATCTCATAGGAA 58.748 38.462 0.00 0.00 0.00 3.36
414 415 7.905649 ACTCATAGGATTGGATCTCATAGGAAT 59.094 37.037 0.00 0.00 0.00 3.01
465 466 5.473796 TTCATAGGAAATTTAACGTCCGC 57.526 39.130 0.00 0.00 36.49 5.54
466 467 4.761975 TCATAGGAAATTTAACGTCCGCT 58.238 39.130 0.00 0.00 36.49 5.52
467 468 4.807304 TCATAGGAAATTTAACGTCCGCTC 59.193 41.667 0.00 0.00 36.49 5.03
468 469 2.353323 AGGAAATTTAACGTCCGCTCC 58.647 47.619 0.00 0.00 36.49 4.70
469 470 2.078392 GGAAATTTAACGTCCGCTCCA 58.922 47.619 0.00 0.00 0.00 3.86
471 472 3.485633 GAAATTTAACGTCCGCTCCAAC 58.514 45.455 0.00 0.00 0.00 3.77
472 473 1.445871 ATTTAACGTCCGCTCCAACC 58.554 50.000 0.00 0.00 0.00 3.77
473 474 0.393820 TTTAACGTCCGCTCCAACCT 59.606 50.000 0.00 0.00 0.00 3.50
513 516 6.815089 TGTTTTTCTATGGCATCAAACACTT 58.185 32.000 1.65 0.00 31.00 3.16
523 526 6.934056 TGGCATCAAACACTTATTGCTAATT 58.066 32.000 0.00 0.00 0.00 1.40
553 564 7.817418 TGATTTAAATGGGCATTACTACTCC 57.183 36.000 5.17 0.00 0.00 3.85
554 565 6.485313 TGATTTAAATGGGCATTACTACTCCG 59.515 38.462 5.17 0.00 0.00 4.63
557 568 3.963428 ATGGGCATTACTACTCCGATC 57.037 47.619 0.00 0.00 0.00 3.69
563 574 4.463186 GGCATTACTACTCCGATCCTATGT 59.537 45.833 0.00 0.00 0.00 2.29
601 620 7.822161 TCAAAATCCTGTGAATCAAAGAGAA 57.178 32.000 1.15 0.00 0.00 2.87
613 632 7.819900 GTGAATCAAAGAGAACCTGTACAGTAT 59.180 37.037 21.18 9.59 0.00 2.12
614 633 9.031537 TGAATCAAAGAGAACCTGTACAGTATA 57.968 33.333 21.18 0.00 0.00 1.47
632 654 8.043429 ACAGTATACTACCCTACAGACTACAT 57.957 38.462 4.74 0.00 0.00 2.29
635 657 9.391227 AGTATACTACCCTACAGACTACATACT 57.609 37.037 2.75 0.00 0.00 2.12
642 664 8.272659 ACCCTACAGACTACATACTCTACATA 57.727 38.462 0.00 0.00 0.00 2.29
714 743 1.530013 AAACTGCACCATCCTGCTGC 61.530 55.000 0.00 0.00 39.14 5.25
799 833 1.134220 ACACGCCAGGAAAGAAGAACA 60.134 47.619 0.00 0.00 0.00 3.18
1312 1354 2.519013 GTGCCCTTGGATTGTCTCTTT 58.481 47.619 0.00 0.00 0.00 2.52
1517 1569 6.727824 ACTGAAATTTCATGACTAAGACGG 57.272 37.500 20.76 7.58 36.46 4.79
1684 1739 1.833630 ACGATCATTCTTGGCCTGAGA 59.166 47.619 3.32 4.61 0.00 3.27
1795 1857 5.939883 TCATTAACTGAGTACTGCAATGCTT 59.060 36.000 6.82 0.00 0.00 3.91
1829 1891 9.574516 AGATTATAATGTTTAGTTAGGCCCTTG 57.425 33.333 1.78 0.00 0.00 3.61
1957 2020 5.964958 TTCTTTAAAATCAGGAGGCAGTG 57.035 39.130 0.00 0.00 0.00 3.66
1964 2027 2.550830 TCAGGAGGCAGTGTTCTTTC 57.449 50.000 0.00 0.00 0.00 2.62
2011 2074 5.838521 AGAATGTTTGTTAAACTCCACCCAT 59.161 36.000 6.07 0.00 41.90 4.00
2023 2086 4.310740 ACTCCACCCATCTCTTAATCCAT 58.689 43.478 0.00 0.00 0.00 3.41
2046 2109 8.405531 CCATTCTTCAACACAGTTTAGAGAAAA 58.594 33.333 0.00 0.00 0.00 2.29
2071 2134 2.218953 TGGCTTTATCGACCGATGTC 57.781 50.000 14.42 1.13 36.17 3.06
2084 2147 0.999406 CGATGTCCTTGCTAACCACG 59.001 55.000 0.00 0.00 0.00 4.94
2147 2214 4.655440 TGTGTGTAACCGATCATTTTCG 57.345 40.909 0.00 0.00 38.83 3.46
2166 2233 9.731519 CATTTTCGAAAGCAATTATTTCTTGTC 57.268 29.630 10.98 0.00 35.05 3.18
2167 2234 9.696917 ATTTTCGAAAGCAATTATTTCTTGTCT 57.303 25.926 10.98 0.00 35.05 3.41
2329 2398 7.362920 GGTTTTGGTGAATGAGTAAGCACATAT 60.363 37.037 0.00 0.00 33.09 1.78
2516 2586 4.568152 AGTGTGGAAACCAATTCTTTCG 57.432 40.909 0.00 0.00 38.18 3.46
2777 2848 7.953493 TCCCAAGGTTACCTCATTTTTCTTTAT 59.047 33.333 3.62 0.00 30.89 1.40
2997 3074 5.895636 TGTCTTGAACATGTGAAGTGTTT 57.104 34.783 14.50 0.00 39.72 2.83
3130 3207 6.825721 GGACAAGATTCACAGTTCAATAGGAT 59.174 38.462 0.00 0.00 0.00 3.24
3267 3346 9.615295 TTTTAAGTAAATTATTGTGGCGAGAAC 57.385 29.630 0.00 0.00 0.00 3.01
3371 3450 7.588143 TTTGTTAGTTTGAACATGTTTGTGG 57.412 32.000 13.36 0.00 39.04 4.17
3520 3599 6.478512 TTTCAGGTTTTTGTTTCTATGGCT 57.521 33.333 0.00 0.00 0.00 4.75
3586 3666 7.771183 ACAGTGACAACAAAATAACATCTTGT 58.229 30.769 0.00 0.00 34.81 3.16
4070 4150 6.381498 TCTTATGTCCACCTGTATTTTGGA 57.619 37.500 0.00 0.00 37.07 3.53
4181 4261 7.074653 ACTTTTGTTGGTCCTAGAATACTGA 57.925 36.000 0.00 0.00 0.00 3.41
4184 4264 6.428083 TTGTTGGTCCTAGAATACTGAACA 57.572 37.500 0.00 0.00 0.00 3.18
4264 4344 4.333913 AGCTACTTGATACATCTGCCTG 57.666 45.455 0.00 0.00 0.00 4.85
4266 4346 4.054671 GCTACTTGATACATCTGCCTGTC 58.945 47.826 0.00 0.00 0.00 3.51
4518 4598 2.123018 AGATGATATGGGAGGGCACA 57.877 50.000 0.00 0.00 0.00 4.57
4802 4884 5.645929 TCTCTCTTTACAGTTTGTGTTTGCA 59.354 36.000 0.00 0.00 40.94 4.08
4814 4896 2.267426 GTGTTTGCACCTTTTCGCTTT 58.733 42.857 0.00 0.00 39.61 3.51
5042 5125 3.244526 TGCATCAACTGAGGAACTGCTTA 60.245 43.478 0.00 0.00 41.55 3.09
5054 5137 6.756074 TGAGGAACTGCTTAAAACATTTGTTG 59.244 34.615 0.00 0.00 41.55 3.33
5064 5147 7.569226 GCTTAAAACATTTGTTGCATACACCTG 60.569 37.037 0.00 0.00 38.44 4.00
5072 5155 6.701145 TTGTTGCATACACCTGAACTTTTA 57.299 33.333 0.00 0.00 36.21 1.52
5135 5222 2.314323 AGCCAACCACAAGCAAAAAG 57.686 45.000 0.00 0.00 0.00 2.27
5136 5223 1.554617 AGCCAACCACAAGCAAAAAGT 59.445 42.857 0.00 0.00 0.00 2.66
5137 5224 2.027285 AGCCAACCACAAGCAAAAAGTT 60.027 40.909 0.00 0.00 0.00 2.66
5138 5225 2.095692 GCCAACCACAAGCAAAAAGTTG 59.904 45.455 0.00 0.00 37.83 3.16
5139 5226 2.677337 CCAACCACAAGCAAAAAGTTGG 59.323 45.455 11.87 11.87 45.76 3.77
5140 5227 2.022764 ACCACAAGCAAAAAGTTGGC 57.977 45.000 0.00 0.00 35.10 4.52
5141 5228 1.554617 ACCACAAGCAAAAAGTTGGCT 59.445 42.857 0.00 0.00 35.10 4.75
5142 5229 2.763448 ACCACAAGCAAAAAGTTGGCTA 59.237 40.909 0.00 0.00 35.10 3.93
5143 5230 3.181476 ACCACAAGCAAAAAGTTGGCTAG 60.181 43.478 0.00 0.00 35.10 3.42
5144 5231 2.796593 CACAAGCAAAAAGTTGGCTAGC 59.203 45.455 6.04 6.04 35.10 3.42
5145 5232 2.430332 ACAAGCAAAAAGTTGGCTAGCA 59.570 40.909 18.24 0.00 35.10 3.49
5146 5233 3.118811 ACAAGCAAAAAGTTGGCTAGCAA 60.119 39.130 18.24 0.85 35.10 3.91
5147 5234 3.817709 AGCAAAAAGTTGGCTAGCAAA 57.182 38.095 18.24 9.18 35.10 3.68
5197 5284 2.554893 GCTTCCCACGTTTTGTCCAATA 59.445 45.455 0.00 0.00 0.00 1.90
5267 5354 7.325338 CGGAAATATTAGCAATCATTCAAGCAG 59.675 37.037 0.00 0.00 0.00 4.24
5273 5360 1.134907 CAATCATTCAAGCAGTGCCCC 60.135 52.381 12.58 0.00 0.00 5.80
5347 5440 5.586243 CACCATCTATACAAACCCACTTCAG 59.414 44.000 0.00 0.00 0.00 3.02
5350 5443 2.969821 ATACAAACCCACTTCAGGCA 57.030 45.000 0.00 0.00 0.00 4.75
5396 5489 8.129496 AGGAAAAGAAAGACACAACCTTTTTA 57.871 30.769 0.00 0.00 37.23 1.52
5458 5559 1.809209 GCTCTTCTCGGCTGCTCAC 60.809 63.158 0.00 0.00 0.00 3.51
5506 5607 3.670991 GCGCGTTGTTTTTCCATATTTGA 59.329 39.130 8.43 0.00 0.00 2.69
5527 5628 4.527427 TGAGGTTGGAAATTGATCATTGCA 59.473 37.500 0.00 0.00 0.00 4.08
5544 5645 1.524621 CAAGGGATGCACCTAGCCG 60.525 63.158 0.00 0.00 44.83 5.52
5574 5951 1.103803 TGCATCCTCTGACTCGTACC 58.896 55.000 0.00 0.00 0.00 3.34
5587 5964 1.134367 CTCGTACCGGCATCTTCAAGA 59.866 52.381 0.00 0.00 0.00 3.02
5644 6021 2.241722 CGATTTGTTTGCGGACATGTC 58.758 47.619 17.91 17.91 0.00 3.06
5655 6033 1.404717 CGGACATGTCTGTGGAAGAGG 60.405 57.143 24.11 0.03 34.84 3.69
5685 6063 5.471556 TCCGTCACAAATTAGACACCTAA 57.528 39.130 6.47 0.00 39.04 2.69
5693 6071 5.475564 ACAAATTAGACACCTAACGGCATTT 59.524 36.000 0.00 0.00 37.67 2.32
5694 6072 6.655848 ACAAATTAGACACCTAACGGCATTTA 59.344 34.615 0.00 0.00 37.67 1.40
5695 6073 7.338449 ACAAATTAGACACCTAACGGCATTTAT 59.662 33.333 0.00 0.00 37.67 1.40
5701 6079 5.890334 ACACCTAACGGCATTTATCATTTG 58.110 37.500 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.989279 AACACTGTTGGGATATCATTGC 57.011 40.909 4.83 0.00 0.00 3.56
1 2 7.339212 TCCTTAAACACTGTTGGGATATCATTG 59.661 37.037 4.83 0.00 0.00 2.82
2 3 7.410174 TCCTTAAACACTGTTGGGATATCATT 58.590 34.615 4.83 0.00 0.00 2.57
3 4 6.969043 TCCTTAAACACTGTTGGGATATCAT 58.031 36.000 4.83 0.00 0.00 2.45
4 5 6.381498 TCCTTAAACACTGTTGGGATATCA 57.619 37.500 4.83 0.00 0.00 2.15
5 6 7.393515 ACTTTCCTTAAACACTGTTGGGATATC 59.606 37.037 10.45 0.00 0.00 1.63
6 7 7.238710 ACTTTCCTTAAACACTGTTGGGATAT 58.761 34.615 10.45 0.00 0.00 1.63
7 8 6.607019 ACTTTCCTTAAACACTGTTGGGATA 58.393 36.000 10.45 6.91 0.00 2.59
8 9 5.454966 ACTTTCCTTAAACACTGTTGGGAT 58.545 37.500 10.45 0.00 0.00 3.85
9 10 4.862371 ACTTTCCTTAAACACTGTTGGGA 58.138 39.130 0.00 1.87 0.00 4.37
10 11 5.348164 CAACTTTCCTTAAACACTGTTGGG 58.652 41.667 0.00 0.00 29.79 4.12
11 12 4.803613 GCAACTTTCCTTAAACACTGTTGG 59.196 41.667 0.00 0.00 32.12 3.77
12 13 5.406649 TGCAACTTTCCTTAAACACTGTTG 58.593 37.500 0.00 0.00 33.48 3.33
13 14 5.652994 TGCAACTTTCCTTAAACACTGTT 57.347 34.783 0.00 0.00 0.00 3.16
14 15 5.852282 ATGCAACTTTCCTTAAACACTGT 57.148 34.783 0.00 0.00 0.00 3.55
15 16 6.272318 TCAATGCAACTTTCCTTAAACACTG 58.728 36.000 0.00 0.00 0.00 3.66
16 17 6.463995 TCAATGCAACTTTCCTTAAACACT 57.536 33.333 0.00 0.00 0.00 3.55
17 18 7.095649 GGATTCAATGCAACTTTCCTTAAACAC 60.096 37.037 0.00 0.00 0.00 3.32
18 19 6.928492 GGATTCAATGCAACTTTCCTTAAACA 59.072 34.615 0.00 0.00 0.00 2.83
19 20 6.928492 TGGATTCAATGCAACTTTCCTTAAAC 59.072 34.615 0.00 0.00 0.00 2.01
20 21 7.060383 TGGATTCAATGCAACTTTCCTTAAA 57.940 32.000 0.00 0.00 0.00 1.52
21 22 6.662865 TGGATTCAATGCAACTTTCCTTAA 57.337 33.333 0.00 0.00 0.00 1.85
22 23 6.664816 AGATGGATTCAATGCAACTTTCCTTA 59.335 34.615 0.00 0.00 29.83 2.69
23 24 5.482878 AGATGGATTCAATGCAACTTTCCTT 59.517 36.000 0.00 0.00 29.83 3.36
24 25 5.021458 AGATGGATTCAATGCAACTTTCCT 58.979 37.500 0.00 0.00 29.83 3.36
25 26 5.105635 TCAGATGGATTCAATGCAACTTTCC 60.106 40.000 0.00 0.00 31.67 3.13
26 27 5.957798 TCAGATGGATTCAATGCAACTTTC 58.042 37.500 0.00 0.00 31.67 2.62
27 28 5.623824 GCTCAGATGGATTCAATGCAACTTT 60.624 40.000 0.00 0.00 31.67 2.66
28 29 4.142227 GCTCAGATGGATTCAATGCAACTT 60.142 41.667 0.00 0.00 31.67 2.66
29 30 3.380637 GCTCAGATGGATTCAATGCAACT 59.619 43.478 0.00 0.00 34.21 3.16
30 31 3.490419 GGCTCAGATGGATTCAATGCAAC 60.490 47.826 0.00 0.00 33.18 4.17
31 32 2.691526 GGCTCAGATGGATTCAATGCAA 59.308 45.455 0.00 0.00 33.18 4.08
32 33 2.092049 AGGCTCAGATGGATTCAATGCA 60.092 45.455 0.00 0.00 34.26 3.96
33 34 2.293677 CAGGCTCAGATGGATTCAATGC 59.706 50.000 0.00 0.00 0.00 3.56
34 35 2.885266 CCAGGCTCAGATGGATTCAATG 59.115 50.000 0.00 0.00 39.02 2.82
35 36 2.512896 ACCAGGCTCAGATGGATTCAAT 59.487 45.455 3.42 0.00 39.02 2.57
36 37 1.918262 ACCAGGCTCAGATGGATTCAA 59.082 47.619 3.42 0.00 39.02 2.69
37 38 1.211212 CACCAGGCTCAGATGGATTCA 59.789 52.381 3.42 0.00 39.02 2.57
38 39 1.487976 TCACCAGGCTCAGATGGATTC 59.512 52.381 3.42 0.00 39.02 2.52
39 40 1.588239 TCACCAGGCTCAGATGGATT 58.412 50.000 3.42 0.00 39.02 3.01
40 41 1.817087 ATCACCAGGCTCAGATGGAT 58.183 50.000 3.42 0.00 39.02 3.41
41 42 1.588239 AATCACCAGGCTCAGATGGA 58.412 50.000 3.42 0.00 39.02 3.41
42 43 2.431954 AAATCACCAGGCTCAGATGG 57.568 50.000 0.00 0.00 42.60 3.51
43 44 4.711399 TGATAAATCACCAGGCTCAGATG 58.289 43.478 0.00 0.00 0.00 2.90
44 45 4.746089 GCTGATAAATCACCAGGCTCAGAT 60.746 45.833 0.00 0.00 32.36 2.90
45 46 3.432749 GCTGATAAATCACCAGGCTCAGA 60.433 47.826 0.00 0.00 32.36 3.27
46 47 2.877168 GCTGATAAATCACCAGGCTCAG 59.123 50.000 0.00 0.00 32.50 3.35
47 48 2.239402 TGCTGATAAATCACCAGGCTCA 59.761 45.455 0.00 0.00 32.50 4.26
48 49 2.877168 CTGCTGATAAATCACCAGGCTC 59.123 50.000 7.20 0.00 37.03 4.70
49 50 2.507058 TCTGCTGATAAATCACCAGGCT 59.493 45.455 12.96 0.00 39.70 4.58
50 51 2.615912 GTCTGCTGATAAATCACCAGGC 59.384 50.000 12.96 9.03 39.70 4.85
51 52 3.877559 TGTCTGCTGATAAATCACCAGG 58.122 45.455 12.96 0.00 39.70 4.45
52 53 7.660617 AGAATATGTCTGCTGATAAATCACCAG 59.339 37.037 8.41 8.41 40.29 4.00
53 54 7.512130 AGAATATGTCTGCTGATAAATCACCA 58.488 34.615 0.00 0.00 34.29 4.17
54 55 7.976135 AGAATATGTCTGCTGATAAATCACC 57.024 36.000 0.00 0.00 34.29 4.02
55 56 9.049523 TCAAGAATATGTCTGCTGATAAATCAC 57.950 33.333 0.00 0.00 36.40 3.06
56 57 9.049523 GTCAAGAATATGTCTGCTGATAAATCA 57.950 33.333 0.00 0.00 36.40 2.57
57 58 8.502387 GGTCAAGAATATGTCTGCTGATAAATC 58.498 37.037 0.00 0.00 36.40 2.17
58 59 7.172190 CGGTCAAGAATATGTCTGCTGATAAAT 59.828 37.037 0.00 0.00 36.40 1.40
59 60 6.479990 CGGTCAAGAATATGTCTGCTGATAAA 59.520 38.462 0.00 0.00 36.40 1.40
60 61 5.985530 CGGTCAAGAATATGTCTGCTGATAA 59.014 40.000 0.00 0.00 36.40 1.75
61 62 5.532557 CGGTCAAGAATATGTCTGCTGATA 58.467 41.667 0.00 0.00 36.40 2.15
62 63 4.375272 CGGTCAAGAATATGTCTGCTGAT 58.625 43.478 0.00 0.00 36.40 2.90
63 64 3.785486 CGGTCAAGAATATGTCTGCTGA 58.215 45.455 0.00 0.00 36.40 4.26
64 65 2.286294 GCGGTCAAGAATATGTCTGCTG 59.714 50.000 0.00 0.00 37.63 4.41
65 66 2.555199 GCGGTCAAGAATATGTCTGCT 58.445 47.619 0.00 0.00 37.63 4.24
66 67 1.599542 GGCGGTCAAGAATATGTCTGC 59.400 52.381 0.00 0.00 39.17 4.26
67 68 3.185246 AGGCGGTCAAGAATATGTCTG 57.815 47.619 0.00 0.00 36.40 3.51
68 69 3.055094 ACAAGGCGGTCAAGAATATGTCT 60.055 43.478 0.00 0.00 38.69 3.41
69 70 3.270877 ACAAGGCGGTCAAGAATATGTC 58.729 45.455 0.00 0.00 0.00 3.06
70 71 3.350219 ACAAGGCGGTCAAGAATATGT 57.650 42.857 0.00 0.00 0.00 2.29
71 72 4.701956 AAACAAGGCGGTCAAGAATATG 57.298 40.909 0.00 0.00 0.00 1.78
72 73 7.122055 TGAAATAAACAAGGCGGTCAAGAATAT 59.878 33.333 0.00 0.00 0.00 1.28
73 74 6.431543 TGAAATAAACAAGGCGGTCAAGAATA 59.568 34.615 0.00 0.00 0.00 1.75
74 75 5.242838 TGAAATAAACAAGGCGGTCAAGAAT 59.757 36.000 0.00 0.00 0.00 2.40
75 76 4.580995 TGAAATAAACAAGGCGGTCAAGAA 59.419 37.500 0.00 0.00 0.00 2.52
76 77 4.023536 GTGAAATAAACAAGGCGGTCAAGA 60.024 41.667 0.00 0.00 0.00 3.02
77 78 4.226761 GTGAAATAAACAAGGCGGTCAAG 58.773 43.478 0.00 0.00 0.00 3.02
78 79 3.632604 TGTGAAATAAACAAGGCGGTCAA 59.367 39.130 0.00 0.00 0.00 3.18
79 80 3.215151 TGTGAAATAAACAAGGCGGTCA 58.785 40.909 0.00 0.00 0.00 4.02
80 81 3.907894 TGTGAAATAAACAAGGCGGTC 57.092 42.857 0.00 0.00 0.00 4.79
81 82 3.823873 TCATGTGAAATAAACAAGGCGGT 59.176 39.130 0.00 0.00 0.00 5.68
82 83 4.433186 TCATGTGAAATAAACAAGGCGG 57.567 40.909 0.00 0.00 0.00 6.13
83 84 5.460646 ACTTCATGTGAAATAAACAAGGCG 58.539 37.500 0.00 0.00 33.07 5.52
84 85 6.701400 ACAACTTCATGTGAAATAAACAAGGC 59.299 34.615 0.00 0.00 33.07 4.35
85 86 8.647143 AACAACTTCATGTGAAATAAACAAGG 57.353 30.769 0.00 0.00 32.81 3.61
88 89 9.190858 GCATAACAACTTCATGTGAAATAAACA 57.809 29.630 0.00 0.00 32.81 2.83
89 90 9.410556 AGCATAACAACTTCATGTGAAATAAAC 57.589 29.630 0.00 0.00 32.81 2.01
90 91 9.979578 AAGCATAACAACTTCATGTGAAATAAA 57.020 25.926 0.00 0.00 32.81 1.40
91 92 9.409312 CAAGCATAACAACTTCATGTGAAATAA 57.591 29.630 0.00 0.00 32.81 1.40
92 93 7.541783 GCAAGCATAACAACTTCATGTGAAATA 59.458 33.333 0.00 0.00 32.81 1.40
93 94 6.366877 GCAAGCATAACAACTTCATGTGAAAT 59.633 34.615 0.00 0.00 32.81 2.17
94 95 5.691305 GCAAGCATAACAACTTCATGTGAAA 59.309 36.000 0.00 0.00 32.81 2.69
95 96 5.221880 GCAAGCATAACAACTTCATGTGAA 58.778 37.500 0.00 0.00 32.81 3.18
96 97 4.321156 GGCAAGCATAACAACTTCATGTGA 60.321 41.667 0.00 0.00 32.81 3.58
97 98 3.922240 GGCAAGCATAACAACTTCATGTG 59.078 43.478 0.00 0.00 32.81 3.21
98 99 3.573538 TGGCAAGCATAACAACTTCATGT 59.426 39.130 0.00 0.00 34.24 3.21
99 100 4.177165 TGGCAAGCATAACAACTTCATG 57.823 40.909 0.00 0.00 0.00 3.07
100 101 4.559153 GTTGGCAAGCATAACAACTTCAT 58.441 39.130 0.00 0.00 39.90 2.57
101 102 3.976169 GTTGGCAAGCATAACAACTTCA 58.024 40.909 0.00 0.00 39.90 3.02
105 106 7.042119 ACAATTTTAGTTGGCAAGCATAACAAC 60.042 33.333 0.00 8.37 42.51 3.32
106 107 6.989169 ACAATTTTAGTTGGCAAGCATAACAA 59.011 30.769 0.00 0.00 33.40 2.83
107 108 6.520272 ACAATTTTAGTTGGCAAGCATAACA 58.480 32.000 0.00 0.00 33.40 2.41
108 109 6.644592 TGACAATTTTAGTTGGCAAGCATAAC 59.355 34.615 0.00 0.00 43.81 1.89
109 110 6.753180 TGACAATTTTAGTTGGCAAGCATAA 58.247 32.000 0.00 0.00 43.81 1.90
110 111 6.338214 TGACAATTTTAGTTGGCAAGCATA 57.662 33.333 0.00 0.00 43.81 3.14
111 112 5.212532 TGACAATTTTAGTTGGCAAGCAT 57.787 34.783 0.00 0.00 43.81 3.79
112 113 4.662468 TGACAATTTTAGTTGGCAAGCA 57.338 36.364 0.00 0.00 43.81 3.91
117 118 5.938322 TCGAAGATGACAATTTTAGTTGGC 58.062 37.500 0.00 0.00 37.63 4.52
118 119 7.133891 ACTCGAAGATGACAATTTTAGTTGG 57.866 36.000 0.00 0.00 33.89 3.77
119 120 6.950428 CGACTCGAAGATGACAATTTTAGTTG 59.050 38.462 0.00 0.00 33.89 3.16
120 121 6.401153 GCGACTCGAAGATGACAATTTTAGTT 60.401 38.462 1.63 0.00 33.89 2.24
121 122 5.062308 GCGACTCGAAGATGACAATTTTAGT 59.938 40.000 1.63 0.00 33.89 2.24
122 123 5.289675 AGCGACTCGAAGATGACAATTTTAG 59.710 40.000 1.63 0.00 33.89 1.85
123 124 5.168569 AGCGACTCGAAGATGACAATTTTA 58.831 37.500 1.63 0.00 33.89 1.52
124 125 3.997021 AGCGACTCGAAGATGACAATTTT 59.003 39.130 1.63 0.00 33.89 1.82
125 126 3.589988 AGCGACTCGAAGATGACAATTT 58.410 40.909 1.63 0.00 33.89 1.82
126 127 3.238108 AGCGACTCGAAGATGACAATT 57.762 42.857 1.63 0.00 33.89 2.32
127 128 2.949451 AGCGACTCGAAGATGACAAT 57.051 45.000 1.63 0.00 33.89 2.71
128 129 3.842732 TTAGCGACTCGAAGATGACAA 57.157 42.857 1.63 0.00 33.89 3.18
129 130 3.190744 AGTTTAGCGACTCGAAGATGACA 59.809 43.478 1.63 0.00 33.89 3.58
130 131 3.760537 AGTTTAGCGACTCGAAGATGAC 58.239 45.455 1.63 0.00 33.89 3.06
131 132 4.166523 CAAGTTTAGCGACTCGAAGATGA 58.833 43.478 1.63 0.00 33.89 2.92
132 133 3.241804 GCAAGTTTAGCGACTCGAAGATG 60.242 47.826 1.63 0.00 33.89 2.90
133 134 2.924290 GCAAGTTTAGCGACTCGAAGAT 59.076 45.455 1.63 0.00 33.89 2.40
134 135 2.325761 GCAAGTTTAGCGACTCGAAGA 58.674 47.619 1.63 0.00 0.00 2.87
135 136 2.771210 GCAAGTTTAGCGACTCGAAG 57.229 50.000 1.63 0.00 0.00 3.79
143 144 4.945242 CGTTTTCGTTCGCAAGTTTAGCG 61.945 47.826 0.53 0.53 46.32 4.26
144 145 2.396185 CGTTTTCGTTCGCAAGTTTAGC 59.604 45.455 0.00 0.00 38.65 3.09
185 186 1.208614 ACGCTCGAACGTCAGGTAC 59.791 57.895 8.27 0.00 44.43 3.34
186 187 3.659334 ACGCTCGAACGTCAGGTA 58.341 55.556 8.27 0.00 44.43 3.08
193 194 2.468040 GGAATCTGATAACGCTCGAACG 59.532 50.000 6.68 6.68 39.50 3.95
194 195 3.707793 AGGAATCTGATAACGCTCGAAC 58.292 45.455 0.00 0.00 0.00 3.95
195 196 4.386867 AAGGAATCTGATAACGCTCGAA 57.613 40.909 0.00 0.00 0.00 3.71
196 197 4.820173 TCTAAGGAATCTGATAACGCTCGA 59.180 41.667 0.00 0.00 0.00 4.04
197 198 5.109662 TCTAAGGAATCTGATAACGCTCG 57.890 43.478 0.00 0.00 0.00 5.03
198 199 8.917655 GTTAATCTAAGGAATCTGATAACGCTC 58.082 37.037 0.00 0.00 0.00 5.03
199 200 7.873505 GGTTAATCTAAGGAATCTGATAACGCT 59.126 37.037 0.00 0.00 0.00 5.07
200 201 7.148787 CGGTTAATCTAAGGAATCTGATAACGC 60.149 40.741 0.00 0.00 0.00 4.84
201 202 7.328737 CCGGTTAATCTAAGGAATCTGATAACG 59.671 40.741 0.00 0.00 0.00 3.18
202 203 8.148999 ACCGGTTAATCTAAGGAATCTGATAAC 58.851 37.037 0.00 0.00 0.00 1.89
203 204 8.258850 ACCGGTTAATCTAAGGAATCTGATAA 57.741 34.615 0.00 0.00 0.00 1.75
204 205 7.850935 ACCGGTTAATCTAAGGAATCTGATA 57.149 36.000 0.00 0.00 0.00 2.15
205 206 6.749036 ACCGGTTAATCTAAGGAATCTGAT 57.251 37.500 0.00 0.00 0.00 2.90
206 207 6.555463 AACCGGTTAATCTAAGGAATCTGA 57.445 37.500 20.78 0.00 0.00 3.27
207 208 7.011482 CAGAAACCGGTTAATCTAAGGAATCTG 59.989 40.741 22.60 19.62 34.63 2.90
208 209 7.048512 CAGAAACCGGTTAATCTAAGGAATCT 58.951 38.462 22.60 11.98 0.00 2.40
209 210 6.260271 CCAGAAACCGGTTAATCTAAGGAATC 59.740 42.308 22.60 9.69 0.00 2.52
210 211 6.069847 TCCAGAAACCGGTTAATCTAAGGAAT 60.070 38.462 22.60 0.00 0.00 3.01
211 212 5.248934 TCCAGAAACCGGTTAATCTAAGGAA 59.751 40.000 22.60 6.80 0.00 3.36
212 213 4.778958 TCCAGAAACCGGTTAATCTAAGGA 59.221 41.667 22.60 19.58 0.00 3.36
213 214 5.093849 TCCAGAAACCGGTTAATCTAAGG 57.906 43.478 22.60 17.71 0.00 2.69
214 215 6.424207 GCTATCCAGAAACCGGTTAATCTAAG 59.576 42.308 22.60 14.66 0.00 2.18
215 216 6.126997 TGCTATCCAGAAACCGGTTAATCTAA 60.127 38.462 22.60 12.23 0.00 2.10
216 217 5.364446 TGCTATCCAGAAACCGGTTAATCTA 59.636 40.000 22.60 7.10 0.00 1.98
217 218 4.163458 TGCTATCCAGAAACCGGTTAATCT 59.837 41.667 22.60 17.99 0.00 2.40
218 219 4.448210 TGCTATCCAGAAACCGGTTAATC 58.552 43.478 22.60 15.77 0.00 1.75
219 220 4.497291 TGCTATCCAGAAACCGGTTAAT 57.503 40.909 22.60 9.52 0.00 1.40
220 221 3.985019 TGCTATCCAGAAACCGGTTAA 57.015 42.857 22.60 4.49 0.00 2.01
221 222 3.602483 GTTGCTATCCAGAAACCGGTTA 58.398 45.455 22.60 4.40 34.57 2.85
222 223 2.433436 GTTGCTATCCAGAAACCGGTT 58.567 47.619 15.86 15.86 34.57 4.44
223 224 1.674817 CGTTGCTATCCAGAAACCGGT 60.675 52.381 0.00 0.00 37.04 5.28
224 225 1.006832 CGTTGCTATCCAGAAACCGG 58.993 55.000 0.00 0.00 37.04 5.28
225 226 2.004583 TCGTTGCTATCCAGAAACCG 57.995 50.000 0.00 0.00 37.04 4.44
226 227 4.438744 CCAATTCGTTGCTATCCAGAAACC 60.439 45.833 0.00 0.00 37.04 3.27
227 228 4.394920 TCCAATTCGTTGCTATCCAGAAAC 59.605 41.667 0.00 0.00 37.01 2.78
228 229 4.394920 GTCCAATTCGTTGCTATCCAGAAA 59.605 41.667 0.00 0.00 0.00 2.52
229 230 3.938963 GTCCAATTCGTTGCTATCCAGAA 59.061 43.478 0.00 0.00 0.00 3.02
230 231 3.055458 TGTCCAATTCGTTGCTATCCAGA 60.055 43.478 0.00 0.00 0.00 3.86
231 232 3.270027 TGTCCAATTCGTTGCTATCCAG 58.730 45.455 0.00 0.00 0.00 3.86
232 233 3.342377 TGTCCAATTCGTTGCTATCCA 57.658 42.857 0.00 0.00 0.00 3.41
233 234 4.900635 ATTGTCCAATTCGTTGCTATCC 57.099 40.909 0.00 0.00 0.00 2.59
236 237 9.378551 GGATATATATTGTCCAATTCGTTGCTA 57.621 33.333 10.45 0.00 32.50 3.49
237 238 7.064609 CGGATATATATTGTCCAATTCGTTGCT 59.935 37.037 13.99 0.00 32.50 3.91
238 239 7.180079 CGGATATATATTGTCCAATTCGTTGC 58.820 38.462 13.99 0.00 32.50 4.17
239 240 7.180079 GCGGATATATATTGTCCAATTCGTTG 58.820 38.462 13.99 0.00 32.50 4.10
240 241 6.315393 GGCGGATATATATTGTCCAATTCGTT 59.685 38.462 13.99 0.00 32.50 3.85
241 242 5.815740 GGCGGATATATATTGTCCAATTCGT 59.184 40.000 13.99 0.00 32.50 3.85
242 243 5.815222 TGGCGGATATATATTGTCCAATTCG 59.185 40.000 13.99 3.41 32.50 3.34
243 244 7.624360 TTGGCGGATATATATTGTCCAATTC 57.376 36.000 14.40 0.00 32.50 2.17
244 245 7.888021 TCTTTGGCGGATATATATTGTCCAATT 59.112 33.333 17.05 0.00 33.07 2.32
245 246 7.402054 TCTTTGGCGGATATATATTGTCCAAT 58.598 34.615 17.05 0.00 33.07 3.16
246 247 6.774673 TCTTTGGCGGATATATATTGTCCAA 58.225 36.000 14.40 14.40 32.23 3.53
247 248 6.367374 TCTTTGGCGGATATATATTGTCCA 57.633 37.500 13.99 2.30 32.23 4.02
248 249 7.681939 TTTCTTTGGCGGATATATATTGTCC 57.318 36.000 0.00 6.73 0.00 4.02
250 251 9.912634 CATTTTTCTTTGGCGGATATATATTGT 57.087 29.630 0.00 0.00 0.00 2.71
254 255 9.126151 TGTTCATTTTTCTTTGGCGGATATATA 57.874 29.630 0.00 0.00 0.00 0.86
255 256 8.006298 TGTTCATTTTTCTTTGGCGGATATAT 57.994 30.769 0.00 0.00 0.00 0.86
256 257 7.397892 TGTTCATTTTTCTTTGGCGGATATA 57.602 32.000 0.00 0.00 0.00 0.86
257 258 6.279513 TGTTCATTTTTCTTTGGCGGATAT 57.720 33.333 0.00 0.00 0.00 1.63
258 259 5.713792 TGTTCATTTTTCTTTGGCGGATA 57.286 34.783 0.00 0.00 0.00 2.59
259 260 4.599047 TGTTCATTTTTCTTTGGCGGAT 57.401 36.364 0.00 0.00 0.00 4.18
260 261 4.392921 TTGTTCATTTTTCTTTGGCGGA 57.607 36.364 0.00 0.00 0.00 5.54
261 262 6.966435 ATATTGTTCATTTTTCTTTGGCGG 57.034 33.333 0.00 0.00 0.00 6.13
285 286 8.825774 AGCCCTAAAAGGAAAATTCAAATGTAT 58.174 29.630 0.00 0.00 37.67 2.29
286 287 8.201242 AGCCCTAAAAGGAAAATTCAAATGTA 57.799 30.769 0.00 0.00 37.67 2.29
287 288 7.016563 AGAGCCCTAAAAGGAAAATTCAAATGT 59.983 33.333 0.00 0.00 37.67 2.71
288 289 7.389232 AGAGCCCTAAAAGGAAAATTCAAATG 58.611 34.615 0.00 0.00 37.67 2.32
289 290 7.559335 AGAGCCCTAAAAGGAAAATTCAAAT 57.441 32.000 0.00 0.00 37.67 2.32
290 291 6.994421 AGAGCCCTAAAAGGAAAATTCAAA 57.006 33.333 0.00 0.00 37.67 2.69
291 292 6.994421 AAGAGCCCTAAAAGGAAAATTCAA 57.006 33.333 0.00 0.00 37.67 2.69
292 293 6.994421 AAAGAGCCCTAAAAGGAAAATTCA 57.006 33.333 0.00 0.00 37.67 2.57
293 294 7.441836 TCAAAAGAGCCCTAAAAGGAAAATTC 58.558 34.615 0.00 0.00 37.67 2.17
294 295 7.373617 TCAAAAGAGCCCTAAAAGGAAAATT 57.626 32.000 0.00 0.00 37.67 1.82
295 296 6.994421 TCAAAAGAGCCCTAAAAGGAAAAT 57.006 33.333 0.00 0.00 37.67 1.82
296 297 6.994421 ATCAAAAGAGCCCTAAAAGGAAAA 57.006 33.333 0.00 0.00 37.67 2.29
297 298 6.994421 AATCAAAAGAGCCCTAAAAGGAAA 57.006 33.333 0.00 0.00 37.67 3.13
298 299 6.994421 AAATCAAAAGAGCCCTAAAAGGAA 57.006 33.333 0.00 0.00 37.67 3.36
299 300 8.485578 TTTAAATCAAAAGAGCCCTAAAAGGA 57.514 30.769 0.00 0.00 37.67 3.36
300 301 7.819415 CCTTTAAATCAAAAGAGCCCTAAAAGG 59.181 37.037 0.00 0.00 38.50 3.11
301 302 8.585018 TCCTTTAAATCAAAAGAGCCCTAAAAG 58.415 33.333 0.00 0.00 38.50 2.27
302 303 8.485578 TCCTTTAAATCAAAAGAGCCCTAAAA 57.514 30.769 0.00 0.00 38.50 1.52
303 304 8.485578 TTCCTTTAAATCAAAAGAGCCCTAAA 57.514 30.769 0.00 0.00 38.50 1.85
304 305 8.485578 TTTCCTTTAAATCAAAAGAGCCCTAA 57.514 30.769 0.00 0.00 38.50 2.69
305 306 8.664669 ATTTCCTTTAAATCAAAAGAGCCCTA 57.335 30.769 0.00 0.00 38.50 3.53
306 307 6.994421 TTTCCTTTAAATCAAAAGAGCCCT 57.006 33.333 0.00 0.00 38.50 5.19
333 334 9.413734 AGGATTTCGATCTTCCAAAAATCTTAT 57.586 29.630 10.38 0.00 36.83 1.73
334 335 8.807948 AGGATTTCGATCTTCCAAAAATCTTA 57.192 30.769 10.38 0.00 36.83 2.10
335 336 7.709149 AGGATTTCGATCTTCCAAAAATCTT 57.291 32.000 10.38 0.00 36.83 2.40
336 337 7.709149 AAGGATTTCGATCTTCCAAAAATCT 57.291 32.000 10.38 0.00 36.83 2.40
337 338 8.893727 TCTAAGGATTTCGATCTTCCAAAAATC 58.106 33.333 10.38 2.75 36.21 2.17
338 339 8.807948 TCTAAGGATTTCGATCTTCCAAAAAT 57.192 30.769 10.38 0.00 31.65 1.82
339 340 8.630054 TTCTAAGGATTTCGATCTTCCAAAAA 57.370 30.769 10.38 0.00 31.65 1.94
340 341 8.807948 ATTCTAAGGATTTCGATCTTCCAAAA 57.192 30.769 10.38 1.77 31.65 2.44
341 342 8.807948 AATTCTAAGGATTTCGATCTTCCAAA 57.192 30.769 10.38 2.03 31.65 3.28
342 343 8.807948 AAATTCTAAGGATTTCGATCTTCCAA 57.192 30.769 10.38 0.00 31.65 3.53
343 344 8.807948 AAAATTCTAAGGATTTCGATCTTCCA 57.192 30.769 10.38 0.00 31.65 3.53
367 368 8.287439 TGAGTCAAAGAACCAACATAGAAAAA 57.713 30.769 0.00 0.00 0.00 1.94
368 369 7.873719 TGAGTCAAAGAACCAACATAGAAAA 57.126 32.000 0.00 0.00 0.00 2.29
369 370 9.219603 CTATGAGTCAAAGAACCAACATAGAAA 57.780 33.333 0.00 0.00 38.53 2.52
370 371 7.824289 CCTATGAGTCAAAGAACCAACATAGAA 59.176 37.037 0.00 0.00 38.53 2.10
371 372 7.180229 TCCTATGAGTCAAAGAACCAACATAGA 59.820 37.037 0.00 0.00 38.53 1.98
372 373 7.331026 TCCTATGAGTCAAAGAACCAACATAG 58.669 38.462 0.00 0.00 37.06 2.23
373 374 7.252612 TCCTATGAGTCAAAGAACCAACATA 57.747 36.000 0.00 0.00 0.00 2.29
374 375 6.126863 TCCTATGAGTCAAAGAACCAACAT 57.873 37.500 0.00 0.00 0.00 2.71
375 376 5.560722 TCCTATGAGTCAAAGAACCAACA 57.439 39.130 0.00 0.00 0.00 3.33
376 377 6.127897 CCAATCCTATGAGTCAAAGAACCAAC 60.128 42.308 0.00 0.00 0.00 3.77
377 378 5.945784 CCAATCCTATGAGTCAAAGAACCAA 59.054 40.000 0.00 0.00 0.00 3.67
378 379 5.250543 TCCAATCCTATGAGTCAAAGAACCA 59.749 40.000 0.00 0.00 0.00 3.67
379 380 5.745227 TCCAATCCTATGAGTCAAAGAACC 58.255 41.667 0.00 0.00 0.00 3.62
380 381 7.278875 AGATCCAATCCTATGAGTCAAAGAAC 58.721 38.462 0.00 0.00 0.00 3.01
381 382 7.126268 TGAGATCCAATCCTATGAGTCAAAGAA 59.874 37.037 0.00 0.00 0.00 2.52
382 383 6.612863 TGAGATCCAATCCTATGAGTCAAAGA 59.387 38.462 0.00 0.00 0.00 2.52
383 384 6.824553 TGAGATCCAATCCTATGAGTCAAAG 58.175 40.000 0.00 0.00 0.00 2.77
384 385 6.813293 TGAGATCCAATCCTATGAGTCAAA 57.187 37.500 0.00 0.00 0.00 2.69
385 386 7.179872 CCTATGAGATCCAATCCTATGAGTCAA 59.820 40.741 0.00 0.00 0.00 3.18
386 387 6.666980 CCTATGAGATCCAATCCTATGAGTCA 59.333 42.308 0.00 0.00 0.00 3.41
387 388 6.894654 TCCTATGAGATCCAATCCTATGAGTC 59.105 42.308 0.00 0.00 0.00 3.36
388 389 6.809428 TCCTATGAGATCCAATCCTATGAGT 58.191 40.000 0.00 0.00 0.00 3.41
389 390 7.730672 TTCCTATGAGATCCAATCCTATGAG 57.269 40.000 0.00 0.00 0.00 2.90
390 391 8.691194 AATTCCTATGAGATCCAATCCTATGA 57.309 34.615 0.00 0.00 0.00 2.15
391 392 9.750783 AAAATTCCTATGAGATCCAATCCTATG 57.249 33.333 0.00 0.00 0.00 2.23
393 394 9.799106 GAAAAATTCCTATGAGATCCAATCCTA 57.201 33.333 0.00 0.00 0.00 2.94
394 395 8.284435 TGAAAAATTCCTATGAGATCCAATCCT 58.716 33.333 0.00 0.00 0.00 3.24
395 396 8.469309 TGAAAAATTCCTATGAGATCCAATCC 57.531 34.615 0.00 0.00 0.00 3.01
447 448 3.055963 TGGAGCGGACGTTAAATTTCCTA 60.056 43.478 0.00 0.00 0.00 2.94
450 451 3.485633 GTTGGAGCGGACGTTAAATTTC 58.514 45.455 0.00 0.00 0.00 2.17
454 455 0.393820 AGGTTGGAGCGGACGTTAAA 59.606 50.000 0.00 0.00 0.00 1.52
456 457 0.393820 AAAGGTTGGAGCGGACGTTA 59.606 50.000 0.00 0.00 0.00 3.18
457 458 0.464916 AAAAGGTTGGAGCGGACGTT 60.465 50.000 0.00 0.00 0.00 3.99
459 460 2.327228 AAAAAGGTTGGAGCGGACG 58.673 52.632 0.00 0.00 0.00 4.79
494 497 6.377996 AGCAATAAGTGTTTGATGCCATAGAA 59.622 34.615 0.00 0.00 32.69 2.10
495 498 5.887598 AGCAATAAGTGTTTGATGCCATAGA 59.112 36.000 0.00 0.00 32.69 1.98
497 500 7.637631 TTAGCAATAAGTGTTTGATGCCATA 57.362 32.000 0.00 0.00 32.69 2.74
498 501 6.528537 TTAGCAATAAGTGTTTGATGCCAT 57.471 33.333 0.00 0.00 32.69 4.40
530 533 6.708949 TCGGAGTAGTAATGCCCATTTAAATC 59.291 38.462 0.00 0.00 32.50 2.17
531 534 6.597562 TCGGAGTAGTAATGCCCATTTAAAT 58.402 36.000 0.00 0.00 32.50 1.40
535 546 4.505039 GGATCGGAGTAGTAATGCCCATTT 60.505 45.833 0.00 0.00 32.50 2.32
538 549 1.968493 GGATCGGAGTAGTAATGCCCA 59.032 52.381 0.00 0.00 0.00 5.36
539 550 2.249139 AGGATCGGAGTAGTAATGCCC 58.751 52.381 0.00 0.00 0.00 5.36
542 553 8.888579 AAAAACATAGGATCGGAGTAGTAATG 57.111 34.615 0.00 0.00 0.00 1.90
569 580 7.359595 TGATTCACAGGATTTTGAAAACGTAG 58.640 34.615 0.00 0.00 35.42 3.51
570 581 7.265647 TGATTCACAGGATTTTGAAAACGTA 57.734 32.000 0.00 0.00 35.42 3.57
571 582 6.142818 TGATTCACAGGATTTTGAAAACGT 57.857 33.333 0.00 0.00 35.42 3.99
572 583 7.434897 TCTTTGATTCACAGGATTTTGAAAACG 59.565 33.333 0.00 0.00 35.42 3.60
573 584 8.647143 TCTTTGATTCACAGGATTTTGAAAAC 57.353 30.769 0.00 0.00 35.42 2.43
578 597 6.865205 GGTTCTCTTTGATTCACAGGATTTTG 59.135 38.462 0.19 0.00 0.00 2.44
586 605 5.924356 TGTACAGGTTCTCTTTGATTCACA 58.076 37.500 0.00 0.00 0.00 3.58
588 607 6.174720 ACTGTACAGGTTCTCTTTGATTCA 57.825 37.500 26.12 0.00 0.00 2.57
601 620 6.388100 TCTGTAGGGTAGTATACTGTACAGGT 59.612 42.308 26.12 16.46 46.32 4.00
613 632 7.927683 AGAGTATGTAGTCTGTAGGGTAGTA 57.072 40.000 0.00 0.00 34.80 1.82
614 633 6.828307 AGAGTATGTAGTCTGTAGGGTAGT 57.172 41.667 0.00 0.00 34.80 2.73
632 654 6.598457 AGCGAAGAGACAGTTTATGTAGAGTA 59.402 38.462 0.00 0.00 44.17 2.59
635 657 5.648526 AGAGCGAAGAGACAGTTTATGTAGA 59.351 40.000 0.00 0.00 44.17 2.59
642 664 4.442706 TCAAAAGAGCGAAGAGACAGTTT 58.557 39.130 0.00 0.00 0.00 2.66
646 668 3.735237 ACTCAAAAGAGCGAAGAGACA 57.265 42.857 0.00 0.00 0.00 3.41
714 743 2.282701 ACATAAAAATGGCAGCAGCG 57.717 45.000 0.00 0.00 43.41 5.18
799 833 4.127907 GTCGTTTCTTGGTCTCCTTTCTT 58.872 43.478 0.00 0.00 0.00 2.52
994 1036 1.227645 CGATCATGTCCATGGCCGT 60.228 57.895 6.96 0.00 39.24 5.68
1684 1739 5.189736 TGATTATAACACTCTGCCTCCAACT 59.810 40.000 0.00 0.00 0.00 3.16
1737 1799 3.909732 TGTCAGAACCCAAAACCTTCAT 58.090 40.909 0.00 0.00 0.00 2.57
1829 1891 1.917872 TGGTACAGTTCAAATGCCCC 58.082 50.000 0.00 0.00 0.00 5.80
1957 2020 8.402326 ACCAAACATAAGAAAAACGAAAGAAC 57.598 30.769 0.00 0.00 0.00 3.01
1964 2027 4.806247 TGCCAACCAAACATAAGAAAAACG 59.194 37.500 0.00 0.00 0.00 3.60
2011 2074 7.453393 ACTGTGTTGAAGAATGGATTAAGAGA 58.547 34.615 0.00 0.00 0.00 3.10
2046 2109 4.395959 TCGGTCGATAAAGCCATAGTTT 57.604 40.909 0.00 0.00 0.00 2.66
2053 2116 1.068741 AGGACATCGGTCGATAAAGCC 59.931 52.381 5.50 5.47 45.28 4.35
2064 2127 1.369625 GTGGTTAGCAAGGACATCGG 58.630 55.000 0.00 0.00 0.00 4.18
2071 2134 4.454504 ACTTGAATAACGTGGTTAGCAAGG 59.545 41.667 23.09 13.60 42.19 3.61
2084 2147 9.821662 ATTCGCTACACTTTTAACTTGAATAAC 57.178 29.630 0.00 0.00 0.00 1.89
2114 2181 9.256477 GATCGGTTACACACATTCTATTTGATA 57.744 33.333 0.00 0.00 0.00 2.15
2147 2214 8.084684 ACCAAGAGACAAGAAATAATTGCTTTC 58.915 33.333 7.05 7.05 33.69 2.62
2166 2233 2.756840 TGCTCATCAGTCACCAAGAG 57.243 50.000 0.00 0.00 0.00 2.85
2167 2234 5.011431 CCTATATGCTCATCAGTCACCAAGA 59.989 44.000 0.00 0.00 0.00 3.02
2280 2349 5.874810 CCATATATAACTGATGAACACCCGG 59.125 44.000 0.00 0.00 0.00 5.73
2282 2351 8.691661 AAACCATATATAACTGATGAACACCC 57.308 34.615 0.00 0.00 0.00 4.61
2590 2660 6.529125 CACAAAAGAACAGCCAACATATCATC 59.471 38.462 0.00 0.00 0.00 2.92
2818 2889 6.051717 CAGGTACAAGAGGACTTATTGATGG 58.948 44.000 0.00 0.00 34.70 3.51
3011 3088 7.332678 GCAGAAATTTTGAAGGCTTCATGTAAT 59.667 33.333 28.98 22.92 39.84 1.89
3114 3191 3.264193 AGGCACATCCTATTGAACTGTGA 59.736 43.478 5.25 0.00 45.41 3.58
3130 3207 2.356278 GCCCATCTGGAAGGCACA 59.644 61.111 0.00 0.00 46.34 4.57
3267 3346 5.408204 TGTTGCTACAGATATTGCATTCG 57.592 39.130 0.00 0.00 35.27 3.34
3364 3443 9.477484 CCAGTACAGTATATAAGATCCACAAAC 57.523 37.037 0.00 0.00 0.00 2.93
3520 3599 7.876936 ACTTTTGGACGTACAGAGATAGATA 57.123 36.000 17.25 0.00 0.00 1.98
4181 4261 5.391629 GTTGGAAACGTTCTGAAAGACTGTT 60.392 40.000 10.28 0.00 39.45 3.16
4184 4264 4.877323 GTTGGAAACGTTCTGAAAGACT 57.123 40.909 10.28 0.00 39.45 3.24
4264 4344 5.576447 TGAACAGAAAAAGAAACAGGGAC 57.424 39.130 0.00 0.00 0.00 4.46
4266 4346 7.438160 GGTAAATGAACAGAAAAAGAAACAGGG 59.562 37.037 0.00 0.00 0.00 4.45
4773 4855 7.321745 ACACAAACTGTAAAGAGAGAAAAGG 57.678 36.000 0.00 0.00 0.00 3.11
4814 4896 5.392767 TGTTACAACAAAGTGGCTGAAAA 57.607 34.783 0.00 0.00 35.67 2.29
4919 5001 1.302033 CAGGACACAGACCAGGCAC 60.302 63.158 0.00 0.00 0.00 5.01
5000 5083 2.512485 TGCATGTTTCAAGCAACTGG 57.488 45.000 0.00 0.00 35.14 4.00
5042 5125 5.911752 TCAGGTGTATGCAACAAATGTTTT 58.088 33.333 0.45 0.00 40.63 2.43
5054 5137 8.865590 TTCTTTTTAAAAGTTCAGGTGTATGC 57.134 30.769 15.85 0.00 0.00 3.14
5102 5187 1.269723 GTTGGCTTAGGCTCAAACCAC 59.730 52.381 7.43 0.00 38.73 4.16
5146 5233 9.547279 AACCTTAGGGAGAATACAATCATTTTT 57.453 29.630 2.32 0.00 36.25 1.94
5147 5234 9.547279 AAACCTTAGGGAGAATACAATCATTTT 57.453 29.630 2.32 0.00 36.25 1.82
5150 5237 7.561356 CCAAAACCTTAGGGAGAATACAATCAT 59.439 37.037 2.32 0.00 36.25 2.45
5151 5238 6.889722 CCAAAACCTTAGGGAGAATACAATCA 59.110 38.462 2.32 0.00 36.25 2.57
5152 5239 6.183360 GCCAAAACCTTAGGGAGAATACAATC 60.183 42.308 2.32 0.00 36.25 2.67
5154 5241 5.014202 GCCAAAACCTTAGGGAGAATACAA 58.986 41.667 2.32 0.00 36.25 2.41
5157 5244 5.506708 GAAGCCAAAACCTTAGGGAGAATA 58.493 41.667 2.32 0.00 36.25 1.75
5159 5246 3.499745 GGAAGCCAAAACCTTAGGGAGAA 60.500 47.826 2.32 0.00 36.25 2.87
5160 5247 2.041216 GGAAGCCAAAACCTTAGGGAGA 59.959 50.000 2.32 0.00 36.25 3.71
5161 5248 2.447443 GGAAGCCAAAACCTTAGGGAG 58.553 52.381 2.32 0.00 36.25 4.30
5162 5249 1.076513 GGGAAGCCAAAACCTTAGGGA 59.923 52.381 2.32 0.00 36.25 4.20
5163 5250 1.203125 TGGGAAGCCAAAACCTTAGGG 60.203 52.381 2.32 0.00 38.88 3.53
5164 5251 1.893137 GTGGGAAGCCAAAACCTTAGG 59.107 52.381 0.00 0.00 0.00 2.69
5165 5252 1.539827 CGTGGGAAGCCAAAACCTTAG 59.460 52.381 0.00 0.00 0.00 2.18
5216 5303 8.057742 CGCATGCTCAATCCAATTTAAATTTAC 58.942 33.333 17.13 0.00 0.00 2.01
5219 5306 5.524646 CCGCATGCTCAATCCAATTTAAATT 59.475 36.000 17.13 7.64 0.00 1.82
5220 5307 5.051816 CCGCATGCTCAATCCAATTTAAAT 58.948 37.500 17.13 0.00 0.00 1.40
5221 5308 4.159321 TCCGCATGCTCAATCCAATTTAAA 59.841 37.500 17.13 0.00 0.00 1.52
5222 5309 3.698539 TCCGCATGCTCAATCCAATTTAA 59.301 39.130 17.13 0.00 0.00 1.52
5223 5310 3.286353 TCCGCATGCTCAATCCAATTTA 58.714 40.909 17.13 0.00 0.00 1.40
5224 5311 2.101783 TCCGCATGCTCAATCCAATTT 58.898 42.857 17.13 0.00 0.00 1.82
5291 5384 1.139256 TGGTCACGCAGGTAACAGAAA 59.861 47.619 0.00 0.00 41.41 2.52
5294 5387 1.588674 TTTGGTCACGCAGGTAACAG 58.411 50.000 0.00 0.00 41.41 3.16
5336 5429 1.763770 CCTCTGCCTGAAGTGGGTT 59.236 57.895 0.00 0.00 0.00 4.11
5399 5492 7.226720 GCCATTATCGAGTATCTTCCTCAAAAA 59.773 37.037 0.00 0.00 0.00 1.94
5400 5493 6.706270 GCCATTATCGAGTATCTTCCTCAAAA 59.294 38.462 0.00 0.00 0.00 2.44
5401 5494 6.042093 AGCCATTATCGAGTATCTTCCTCAAA 59.958 38.462 0.00 0.00 0.00 2.69
5402 5495 5.540337 AGCCATTATCGAGTATCTTCCTCAA 59.460 40.000 0.00 0.00 0.00 3.02
5403 5496 5.080337 AGCCATTATCGAGTATCTTCCTCA 58.920 41.667 0.00 0.00 0.00 3.86
5406 5499 6.071840 AGTGTAGCCATTATCGAGTATCTTCC 60.072 42.308 0.00 0.00 0.00 3.46
5407 5500 6.915349 AGTGTAGCCATTATCGAGTATCTTC 58.085 40.000 0.00 0.00 0.00 2.87
5412 5505 4.023107 GCAGAGTGTAGCCATTATCGAGTA 60.023 45.833 0.00 0.00 0.00 2.59
5458 5559 0.034089 CTAGGCAAAGAGGGGTTGGG 60.034 60.000 0.00 0.00 0.00 4.12
5490 5591 6.985653 TCCAACCTCAAATATGGAAAAACA 57.014 33.333 0.00 0.00 38.95 2.83
5506 5607 5.484715 CTTGCAATGATCAATTTCCAACCT 58.515 37.500 0.00 0.00 0.00 3.50
5527 5628 1.271840 TTCGGCTAGGTGCATCCCTT 61.272 55.000 0.51 0.00 45.15 3.95
5544 5645 6.229733 AGTCAGAGGATGCATAATAGCTTTC 58.770 40.000 0.00 0.00 34.99 2.62
5574 5951 2.011947 TGCATTCTCTTGAAGATGCCG 58.988 47.619 14.55 0.00 37.55 5.69
5587 5964 4.441792 GTTTTGGACTTTTGGTGCATTCT 58.558 39.130 0.00 0.00 45.31 2.40
5640 6017 1.293062 ATGGCCTCTTCCACAGACAT 58.707 50.000 3.32 0.00 39.25 3.06
5644 6021 3.217626 GGATAAATGGCCTCTTCCACAG 58.782 50.000 3.32 0.00 39.25 3.66
5655 6033 6.183360 TGTCTAATTTGTGACGGATAAATGGC 60.183 38.462 0.00 0.00 36.10 4.40
5685 6063 2.357637 CCGGACAAATGATAAATGCCGT 59.642 45.455 0.00 0.00 34.32 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.