Multiple sequence alignment - TraesCS7D01G339800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G339800 chr7D 100.000 4790 0 0 1 4790 434145736 434150525 0.000000e+00 8846.0
1 TraesCS7D01G339800 chr7D 85.897 234 20 6 394 619 126715654 126715426 2.400000e-58 237.0
2 TraesCS7D01G339800 chr7D 76.744 344 68 11 3243 3580 366451956 366452293 1.140000e-41 182.0
3 TraesCS7D01G339800 chr7D 100.000 40 0 0 5123 5162 434150858 434150897 1.990000e-09 75.0
4 TraesCS7D01G339800 chr7B 95.386 3901 123 22 647 4511 451351938 451355817 0.000000e+00 6154.0
5 TraesCS7D01G339800 chr7B 92.336 274 17 2 4505 4776 451359183 451359454 2.250000e-103 387.0
6 TraesCS7D01G339800 chr7B 86.147 231 19 9 394 614 48050747 48050520 2.400000e-58 237.0
7 TraesCS7D01G339800 chr7B 91.667 72 5 1 156 227 61605311 61605381 1.180000e-16 99.0
8 TraesCS7D01G339800 chr7A 95.787 2872 91 19 1475 4326 484594303 484597164 0.000000e+00 4606.0
9 TraesCS7D01G339800 chr7A 95.416 829 35 1 649 1477 484593422 484594247 0.000000e+00 1317.0
10 TraesCS7D01G339800 chr7A 79.040 1083 199 26 3057 4125 14190592 14189524 0.000000e+00 717.0
11 TraesCS7D01G339800 chr7A 89.767 215 15 1 4448 4655 484597211 484597425 8.520000e-68 268.0
12 TraesCS7D01G339800 chr7A 76.923 351 68 12 3243 3587 404474285 404474628 2.450000e-43 187.0
13 TraesCS7D01G339800 chr4A 79.367 1105 204 23 3033 4125 721384733 721385825 0.000000e+00 756.0
14 TraesCS7D01G339800 chr4A 86.695 233 15 10 390 614 668444300 668444524 1.440000e-60 244.0
15 TraesCS7D01G339800 chr4A 90.123 81 6 2 156 235 127224648 127224727 2.540000e-18 104.0
16 TraesCS7D01G339800 chr5D 79.088 1119 198 32 3028 4125 115950491 115951594 0.000000e+00 737.0
17 TraesCS7D01G339800 chr5D 82.367 414 71 2 2522 2934 115949937 115950349 4.910000e-95 359.0
18 TraesCS7D01G339800 chr5D 86.147 231 26 3 391 619 487518697 487518923 1.440000e-60 244.0
19 TraesCS7D01G339800 chr5D 91.304 69 5 1 162 230 255700764 255700697 5.500000e-15 93.5
20 TraesCS7D01G339800 chr5D 89.796 49 3 1 4655 4701 425702199 425702151 1.550000e-05 62.1
21 TraesCS7D01G339800 chr5B 79.088 1119 198 31 3028 4125 127504495 127505598 0.000000e+00 737.0
22 TraesCS7D01G339800 chr5B 82.135 431 75 2 2506 2935 127503925 127504354 8.170000e-98 368.0
23 TraesCS7D01G339800 chr5B 90.278 72 6 1 156 227 687259145 687259215 5.500000e-15 93.5
24 TraesCS7D01G339800 chr5A 79.070 1118 200 31 3028 4125 122956599 122957702 0.000000e+00 737.0
25 TraesCS7D01G339800 chr5A 82.093 430 75 2 2506 2934 122956029 122956457 2.940000e-97 366.0
26 TraesCS7D01G339800 chr2B 89.461 408 39 4 2522 2927 110854160 110854565 3.560000e-141 512.0
27 TraesCS7D01G339800 chr2B 78.010 764 144 17 1606 2352 110853234 110853990 4.710000e-125 459.0
28 TraesCS7D01G339800 chr2B 75.740 169 40 1 1770 1938 236527944 236527777 3.310000e-12 84.2
29 TraesCS7D01G339800 chr2A 87.991 433 47 5 2495 2925 72693412 72693841 1.660000e-139 507.0
30 TraesCS7D01G339800 chr2A 77.997 759 145 15 1606 2348 72692513 72693265 1.690000e-124 457.0
31 TraesCS7D01G339800 chr2A 73.494 249 59 7 1770 2015 194130693 194130449 2.560000e-13 87.9
32 TraesCS7D01G339800 chr2D 89.313 393 39 3 2534 2925 73323867 73323477 1.670000e-134 490.0
33 TraesCS7D01G339800 chr2D 77.105 760 150 17 1606 2348 73324861 73324109 7.990000e-113 418.0
34 TraesCS7D01G339800 chr2D 73.729 236 57 5 1770 2003 179692826 179692594 2.560000e-13 87.9
35 TraesCS7D01G339800 chr2D 88.889 72 7 1 156 227 184841391 184841461 2.560000e-13 87.9
36 TraesCS7D01G339800 chrUn 80.542 406 68 11 2492 2890 5436087 5435686 8.400000e-78 302.0
37 TraesCS7D01G339800 chr4D 88.679 212 20 4 390 598 433396137 433395927 6.630000e-64 255.0
38 TraesCS7D01G339800 chr3D 87.069 232 20 5 394 619 356953688 356953461 2.390000e-63 254.0
39 TraesCS7D01G339800 chr3D 88.158 76 7 2 156 230 2721123 2721049 7.120000e-14 89.8
40 TraesCS7D01G339800 chr3D 90.698 43 1 3 4660 4702 456868298 456868337 3.000000e-03 54.7
41 TraesCS7D01G339800 chr6B 86.498 237 19 8 391 619 600593950 600594181 1.110000e-61 248.0
42 TraesCS7D01G339800 chr6B 86.784 227 19 10 395 614 682658519 682658297 5.160000e-60 243.0
43 TraesCS7D01G339800 chr6B 88.889 72 7 1 156 227 48874050 48874120 2.560000e-13 87.9
44 TraesCS7D01G339800 chr6B 94.872 39 2 0 26 64 503928623 503928661 1.550000e-05 62.1
45 TraesCS7D01G339800 chr6B 91.304 46 2 1 4655 4698 554650601 554650556 1.550000e-05 62.1
46 TraesCS7D01G339800 chr4B 82.828 297 25 10 342 619 512159236 512159525 5.160000e-60 243.0
47 TraesCS7D01G339800 chr4B 81.319 91 15 2 4668 4757 27403978 27403889 7.170000e-09 73.1
48 TraesCS7D01G339800 chr6A 91.304 69 5 1 162 230 177807521 177807454 5.500000e-15 93.5
49 TraesCS7D01G339800 chr1A 90.278 72 6 1 156 227 497890477 497890547 5.500000e-15 93.5
50 TraesCS7D01G339800 chr3A 87.692 65 5 2 4655 4716 32104650 32104714 7.170000e-09 73.1
51 TraesCS7D01G339800 chr6D 91.667 48 2 1 4653 4698 401153799 401153846 1.200000e-06 65.8
52 TraesCS7D01G339800 chr6D 94.872 39 2 0 26 64 319347070 319347032 1.550000e-05 62.1
53 TraesCS7D01G339800 chr6D 86.538 52 5 1 4653 4702 386228170 386228221 7.220000e-04 56.5
54 TraesCS7D01G339800 chr1D 86.792 53 5 1 4653 4703 42884888 42884836 2.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G339800 chr7D 434145736 434150897 5161 False 4460.500000 8846 100.000000 1 5162 2 chr7D.!!$F2 5161
1 TraesCS7D01G339800 chr7B 451351938 451359454 7516 False 3270.500000 6154 93.861000 647 4776 2 chr7B.!!$F2 4129
2 TraesCS7D01G339800 chr7A 484593422 484597425 4003 False 2063.666667 4606 93.656667 649 4655 3 chr7A.!!$F2 4006
3 TraesCS7D01G339800 chr7A 14189524 14190592 1068 True 717.000000 717 79.040000 3057 4125 1 chr7A.!!$R1 1068
4 TraesCS7D01G339800 chr4A 721384733 721385825 1092 False 756.000000 756 79.367000 3033 4125 1 chr4A.!!$F3 1092
5 TraesCS7D01G339800 chr5D 115949937 115951594 1657 False 548.000000 737 80.727500 2522 4125 2 chr5D.!!$F2 1603
6 TraesCS7D01G339800 chr5B 127503925 127505598 1673 False 552.500000 737 80.611500 2506 4125 2 chr5B.!!$F2 1619
7 TraesCS7D01G339800 chr5A 122956029 122957702 1673 False 551.500000 737 80.581500 2506 4125 2 chr5A.!!$F1 1619
8 TraesCS7D01G339800 chr2B 110853234 110854565 1331 False 485.500000 512 83.735500 1606 2927 2 chr2B.!!$F1 1321
9 TraesCS7D01G339800 chr2A 72692513 72693841 1328 False 482.000000 507 82.994000 1606 2925 2 chr2A.!!$F1 1319
10 TraesCS7D01G339800 chr2D 73323477 73324861 1384 True 454.000000 490 83.209000 1606 2925 2 chr2D.!!$R2 1319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.104304 AACACGGACGCAGAGTTTCT 59.896 50.000 0.00 0.0 0.00 2.52 F
346 347 0.106708 AGTTTCTGCACCGAGCTTGA 59.893 50.000 1.22 0.0 45.94 3.02 F
349 350 0.179059 TTCTGCACCGAGCTTGAACA 60.179 50.000 1.22 0.0 45.94 3.18 F
982 983 0.248255 CGCTGACGACATCGACATCT 60.248 55.000 8.54 0.0 42.29 2.90 F
2373 2464 0.515564 CACCGACCATTCCGTTTCAC 59.484 55.000 0.00 0.0 0.00 3.18 F
2376 2467 1.196808 CCGACCATTCCGTTTCACAAG 59.803 52.381 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1255 1.449070 GTGGTCGAATTCCCCGGTC 60.449 63.158 0.00 0.0 0.00 4.79 R
2337 2428 1.561542 GGTGTTGATGGAGACCTGGAT 59.438 52.381 0.00 0.0 30.65 3.41 R
2357 2448 1.871039 ACTTGTGAAACGGAATGGTCG 59.129 47.619 0.00 0.0 42.39 4.79 R
2376 2467 0.038709 TGCCTGCGCACCAAAATTAC 60.039 50.000 5.66 0.0 41.12 1.89 R
3648 3856 1.472662 CGGACCACTTCACCTCCAGT 61.473 60.000 0.00 0.0 0.00 4.00 R
4248 4487 1.578206 GGCGGTTCTCCAAGCTGTTC 61.578 60.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.746957 AGATCAAGGGCTGGGACC 58.253 61.111 0.00 0.00 0.00 4.46
36 37 3.160679 CCCCCTGGGTGATCATTAATC 57.839 52.381 12.71 0.00 38.25 1.75
37 38 2.446666 CCCCCTGGGTGATCATTAATCA 59.553 50.000 12.71 0.00 38.25 2.57
38 39 3.117169 CCCCCTGGGTGATCATTAATCAA 60.117 47.826 12.71 0.00 45.88 2.57
39 40 4.449672 CCCCCTGGGTGATCATTAATCAAT 60.450 45.833 12.71 0.00 45.88 2.57
40 41 5.222316 CCCCCTGGGTGATCATTAATCAATA 60.222 44.000 12.71 0.00 45.88 1.90
41 42 6.314120 CCCCTGGGTGATCATTAATCAATAA 58.686 40.000 12.71 0.00 45.88 1.40
42 43 6.782000 CCCCTGGGTGATCATTAATCAATAAA 59.218 38.462 12.71 0.00 45.88 1.40
43 44 7.289782 CCCCTGGGTGATCATTAATCAATAAAA 59.710 37.037 12.71 0.00 45.88 1.52
44 45 8.143835 CCCTGGGTGATCATTAATCAATAAAAC 58.856 37.037 3.97 0.00 45.88 2.43
45 46 8.143835 CCTGGGTGATCATTAATCAATAAAACC 58.856 37.037 0.00 0.00 45.88 3.27
46 47 8.837099 TGGGTGATCATTAATCAATAAAACCT 57.163 30.769 0.00 0.00 45.88 3.50
47 48 9.928618 TGGGTGATCATTAATCAATAAAACCTA 57.071 29.630 0.00 0.00 45.88 3.08
58 59 6.554334 TCAATAAAACCTAGTGAGTTGTGC 57.446 37.500 0.00 0.00 0.00 4.57
59 60 6.296026 TCAATAAAACCTAGTGAGTTGTGCT 58.704 36.000 0.00 0.00 0.00 4.40
60 61 7.446769 TCAATAAAACCTAGTGAGTTGTGCTA 58.553 34.615 0.00 0.00 0.00 3.49
61 62 7.934665 TCAATAAAACCTAGTGAGTTGTGCTAA 59.065 33.333 0.00 0.00 0.00 3.09
62 63 8.564574 CAATAAAACCTAGTGAGTTGTGCTAAA 58.435 33.333 0.00 0.00 0.00 1.85
63 64 8.685838 ATAAAACCTAGTGAGTTGTGCTAAAA 57.314 30.769 0.00 0.00 0.00 1.52
64 65 7.399245 AAAACCTAGTGAGTTGTGCTAAAAA 57.601 32.000 0.00 0.00 0.00 1.94
65 66 7.582667 AAACCTAGTGAGTTGTGCTAAAAAT 57.417 32.000 0.00 0.00 0.00 1.82
66 67 6.560253 ACCTAGTGAGTTGTGCTAAAAATG 57.440 37.500 0.00 0.00 0.00 2.32
67 68 6.296026 ACCTAGTGAGTTGTGCTAAAAATGA 58.704 36.000 0.00 0.00 0.00 2.57
68 69 6.942576 ACCTAGTGAGTTGTGCTAAAAATGAT 59.057 34.615 0.00 0.00 0.00 2.45
69 70 7.094634 ACCTAGTGAGTTGTGCTAAAAATGATG 60.095 37.037 0.00 0.00 0.00 3.07
70 71 6.882610 AGTGAGTTGTGCTAAAAATGATGA 57.117 33.333 0.00 0.00 0.00 2.92
71 72 7.275888 AGTGAGTTGTGCTAAAAATGATGAA 57.724 32.000 0.00 0.00 0.00 2.57
72 73 7.889469 AGTGAGTTGTGCTAAAAATGATGAAT 58.111 30.769 0.00 0.00 0.00 2.57
73 74 8.362639 AGTGAGTTGTGCTAAAAATGATGAATT 58.637 29.630 0.00 0.00 0.00 2.17
74 75 8.430063 GTGAGTTGTGCTAAAAATGATGAATTG 58.570 33.333 0.00 0.00 0.00 2.32
75 76 8.143193 TGAGTTGTGCTAAAAATGATGAATTGT 58.857 29.630 0.00 0.00 0.00 2.71
76 77 8.524870 AGTTGTGCTAAAAATGATGAATTGTC 57.475 30.769 0.00 0.00 0.00 3.18
77 78 7.326789 AGTTGTGCTAAAAATGATGAATTGTCG 59.673 33.333 0.00 0.00 0.00 4.35
78 79 6.907741 TGTGCTAAAAATGATGAATTGTCGA 58.092 32.000 0.00 0.00 0.00 4.20
79 80 7.366513 TGTGCTAAAAATGATGAATTGTCGAA 58.633 30.769 0.00 0.00 0.00 3.71
80 81 8.028354 TGTGCTAAAAATGATGAATTGTCGAAT 58.972 29.630 0.00 0.00 0.00 3.34
81 82 9.502145 GTGCTAAAAATGATGAATTGTCGAATA 57.498 29.630 0.00 0.00 0.00 1.75
86 87 9.520204 AAAAATGATGAATTGTCGAATATCACC 57.480 29.630 0.00 0.00 0.00 4.02
87 88 8.455903 AAATGATGAATTGTCGAATATCACCT 57.544 30.769 0.00 0.00 0.00 4.00
88 89 8.455903 AATGATGAATTGTCGAATATCACCTT 57.544 30.769 0.00 0.00 0.00 3.50
89 90 7.864108 TGATGAATTGTCGAATATCACCTTT 57.136 32.000 0.00 0.00 0.00 3.11
90 91 8.279970 TGATGAATTGTCGAATATCACCTTTT 57.720 30.769 0.00 0.00 0.00 2.27
91 92 8.739039 TGATGAATTGTCGAATATCACCTTTTT 58.261 29.630 0.00 0.00 0.00 1.94
128 129 6.909550 TTTTTGTATGTGGCAGTCCTATTT 57.090 33.333 0.00 0.00 0.00 1.40
129 130 6.909550 TTTTGTATGTGGCAGTCCTATTTT 57.090 33.333 0.00 0.00 0.00 1.82
130 131 6.509418 TTTGTATGTGGCAGTCCTATTTTC 57.491 37.500 0.00 0.00 0.00 2.29
131 132 4.523083 TGTATGTGGCAGTCCTATTTTCC 58.477 43.478 0.00 0.00 0.00 3.13
132 133 4.227300 TGTATGTGGCAGTCCTATTTTCCT 59.773 41.667 0.00 0.00 0.00 3.36
133 134 3.806949 TGTGGCAGTCCTATTTTCCTT 57.193 42.857 0.00 0.00 0.00 3.36
134 135 3.686016 TGTGGCAGTCCTATTTTCCTTC 58.314 45.455 0.00 0.00 0.00 3.46
135 136 3.017442 GTGGCAGTCCTATTTTCCTTCC 58.983 50.000 0.00 0.00 0.00 3.46
136 137 2.025321 TGGCAGTCCTATTTTCCTTCCC 60.025 50.000 0.00 0.00 0.00 3.97
137 138 2.242452 GGCAGTCCTATTTTCCTTCCCT 59.758 50.000 0.00 0.00 0.00 4.20
138 139 3.309193 GGCAGTCCTATTTTCCTTCCCTT 60.309 47.826 0.00 0.00 0.00 3.95
139 140 4.344978 GCAGTCCTATTTTCCTTCCCTTT 58.655 43.478 0.00 0.00 0.00 3.11
140 141 4.772624 GCAGTCCTATTTTCCTTCCCTTTT 59.227 41.667 0.00 0.00 0.00 2.27
141 142 5.336770 GCAGTCCTATTTTCCTTCCCTTTTG 60.337 44.000 0.00 0.00 0.00 2.44
142 143 4.772624 AGTCCTATTTTCCTTCCCTTTTGC 59.227 41.667 0.00 0.00 0.00 3.68
143 144 4.526650 GTCCTATTTTCCTTCCCTTTTGCA 59.473 41.667 0.00 0.00 0.00 4.08
144 145 4.526650 TCCTATTTTCCTTCCCTTTTGCAC 59.473 41.667 0.00 0.00 0.00 4.57
145 146 4.283212 CCTATTTTCCTTCCCTTTTGCACA 59.717 41.667 0.00 0.00 0.00 4.57
146 147 4.980339 ATTTTCCTTCCCTTTTGCACAT 57.020 36.364 0.00 0.00 0.00 3.21
147 148 6.154363 CCTATTTTCCTTCCCTTTTGCACATA 59.846 38.462 0.00 0.00 0.00 2.29
148 149 5.878406 TTTTCCTTCCCTTTTGCACATAA 57.122 34.783 0.00 0.00 0.00 1.90
149 150 4.864704 TTCCTTCCCTTTTGCACATAAC 57.135 40.909 0.00 0.00 0.00 1.89
150 151 4.112634 TCCTTCCCTTTTGCACATAACT 57.887 40.909 0.00 0.00 0.00 2.24
151 152 5.249780 TCCTTCCCTTTTGCACATAACTA 57.750 39.130 0.00 0.00 0.00 2.24
152 153 5.636123 TCCTTCCCTTTTGCACATAACTAA 58.364 37.500 0.00 0.00 0.00 2.24
153 154 6.252995 TCCTTCCCTTTTGCACATAACTAAT 58.747 36.000 0.00 0.00 0.00 1.73
154 155 6.723977 TCCTTCCCTTTTGCACATAACTAATT 59.276 34.615 0.00 0.00 0.00 1.40
155 156 7.234577 TCCTTCCCTTTTGCACATAACTAATTT 59.765 33.333 0.00 0.00 0.00 1.82
156 157 8.527810 CCTTCCCTTTTGCACATAACTAATTTA 58.472 33.333 0.00 0.00 0.00 1.40
157 158 9.921637 CTTCCCTTTTGCACATAACTAATTTAA 57.078 29.630 0.00 0.00 0.00 1.52
159 160 9.921637 TCCCTTTTGCACATAACTAATTTAAAG 57.078 29.630 0.00 0.00 0.00 1.85
160 161 9.921637 CCCTTTTGCACATAACTAATTTAAAGA 57.078 29.630 0.00 0.00 0.00 2.52
183 184 8.403606 AGAAATATAAGACCGTTTAGAACACG 57.596 34.615 0.00 0.00 37.39 4.49
184 185 8.246180 AGAAATATAAGACCGTTTAGAACACGA 58.754 33.333 0.00 0.00 40.20 4.35
185 186 8.761575 AAATATAAGACCGTTTAGAACACGAA 57.238 30.769 0.00 0.00 40.20 3.85
186 187 8.761575 AATATAAGACCGTTTAGAACACGAAA 57.238 30.769 0.00 0.00 40.20 3.46
187 188 6.701432 ATAAGACCGTTTAGAACACGAAAG 57.299 37.500 0.00 0.00 40.20 2.62
204 205 6.570690 ACGAAAGTAATGATCTAAACGCTC 57.429 37.500 0.00 0.00 46.88 5.03
205 206 6.331061 ACGAAAGTAATGATCTAAACGCTCT 58.669 36.000 0.00 0.00 46.88 4.09
206 207 6.812160 ACGAAAGTAATGATCTAAACGCTCTT 59.188 34.615 0.00 0.00 46.88 2.85
207 208 7.972277 ACGAAAGTAATGATCTAAACGCTCTTA 59.028 33.333 0.00 0.00 46.88 2.10
208 209 8.969267 CGAAAGTAATGATCTAAACGCTCTTAT 58.031 33.333 0.00 0.00 0.00 1.73
224 225 8.197988 ACGCTCTTATATTTTGTTTACAGAGG 57.802 34.615 0.00 0.00 0.00 3.69
225 226 7.280205 ACGCTCTTATATTTTGTTTACAGAGGG 59.720 37.037 8.01 8.01 38.18 4.30
226 227 7.494625 CGCTCTTATATTTTGTTTACAGAGGGA 59.505 37.037 0.00 0.00 35.55 4.20
227 228 9.174166 GCTCTTATATTTTGTTTACAGAGGGAA 57.826 33.333 0.00 0.00 0.00 3.97
266 267 9.463443 AGTACATGTAATCTTTGAAAACTTTGC 57.537 29.630 7.25 0.00 0.00 3.68
267 268 9.243637 GTACATGTAATCTTTGAAAACTTTGCA 57.756 29.630 7.25 0.00 0.00 4.08
268 269 8.891671 ACATGTAATCTTTGAAAACTTTGCAT 57.108 26.923 0.00 0.00 0.00 3.96
269 270 8.767085 ACATGTAATCTTTGAAAACTTTGCATG 58.233 29.630 16.16 16.16 40.60 4.06
270 271 7.176285 TGTAATCTTTGAAAACTTTGCATGC 57.824 32.000 11.82 11.82 0.00 4.06
271 272 6.760298 TGTAATCTTTGAAAACTTTGCATGCA 59.240 30.769 18.46 18.46 0.00 3.96
272 273 6.870971 AATCTTTGAAAACTTTGCATGCAT 57.129 29.167 23.37 4.78 0.00 3.96
273 274 5.660629 TCTTTGAAAACTTTGCATGCATG 57.339 34.783 23.37 22.70 0.00 4.06
283 284 2.277692 CATGCATGCCGAACAGCG 60.278 61.111 14.93 0.00 40.47 5.18
294 295 1.497991 CGAACAGCGGACAAGAAAGA 58.502 50.000 0.00 0.00 36.03 2.52
295 296 1.864711 CGAACAGCGGACAAGAAAGAA 59.135 47.619 0.00 0.00 36.03 2.52
296 297 2.480419 CGAACAGCGGACAAGAAAGAAT 59.520 45.455 0.00 0.00 36.03 2.40
297 298 3.058914 CGAACAGCGGACAAGAAAGAATT 60.059 43.478 0.00 0.00 36.03 2.17
298 299 4.467735 GAACAGCGGACAAGAAAGAATTC 58.532 43.478 0.00 0.00 35.70 2.17
299 300 2.814336 ACAGCGGACAAGAAAGAATTCC 59.186 45.455 0.65 0.00 36.12 3.01
300 301 3.077359 CAGCGGACAAGAAAGAATTCCT 58.923 45.455 0.65 0.00 36.12 3.36
301 302 3.077359 AGCGGACAAGAAAGAATTCCTG 58.923 45.455 0.65 0.00 36.12 3.86
302 303 3.074412 GCGGACAAGAAAGAATTCCTGA 58.926 45.455 0.65 0.00 36.12 3.86
303 304 3.502211 GCGGACAAGAAAGAATTCCTGAA 59.498 43.478 0.65 0.00 36.12 3.02
304 305 4.023193 GCGGACAAGAAAGAATTCCTGAAA 60.023 41.667 0.65 0.00 36.12 2.69
305 306 5.507315 GCGGACAAGAAAGAATTCCTGAAAA 60.507 40.000 0.65 0.00 36.12 2.29
306 307 6.145535 CGGACAAGAAAGAATTCCTGAAAAG 58.854 40.000 0.65 0.00 36.12 2.27
307 308 6.450545 GGACAAGAAAGAATTCCTGAAAAGG 58.549 40.000 0.65 0.00 36.12 3.11
308 309 6.265422 GGACAAGAAAGAATTCCTGAAAAGGA 59.735 38.462 0.65 0.00 36.12 3.36
319 320 4.065088 TCCTGAAAAGGAATCTGAACACG 58.935 43.478 0.00 0.00 34.56 4.49
320 321 3.189287 CCTGAAAAGGAATCTGAACACGG 59.811 47.826 0.00 0.00 0.00 4.94
321 322 4.065088 CTGAAAAGGAATCTGAACACGGA 58.935 43.478 0.00 0.00 0.00 4.69
322 323 3.813166 TGAAAAGGAATCTGAACACGGAC 59.187 43.478 0.00 0.00 0.00 4.79
323 324 2.080286 AAGGAATCTGAACACGGACG 57.920 50.000 0.00 0.00 0.00 4.79
324 325 0.389948 AGGAATCTGAACACGGACGC 60.390 55.000 0.00 0.00 0.00 5.19
325 326 0.669318 GGAATCTGAACACGGACGCA 60.669 55.000 0.00 0.00 0.00 5.24
326 327 0.716108 GAATCTGAACACGGACGCAG 59.284 55.000 0.00 0.00 0.00 5.18
327 328 0.317160 AATCTGAACACGGACGCAGA 59.683 50.000 0.00 0.00 41.14 4.26
328 329 0.109086 ATCTGAACACGGACGCAGAG 60.109 55.000 0.00 0.00 40.34 3.35
329 330 1.007271 CTGAACACGGACGCAGAGT 60.007 57.895 0.00 0.00 0.00 3.24
330 331 0.597637 CTGAACACGGACGCAGAGTT 60.598 55.000 0.00 0.00 0.00 3.01
331 332 0.179094 TGAACACGGACGCAGAGTTT 60.179 50.000 0.00 0.00 0.00 2.66
332 333 0.507358 GAACACGGACGCAGAGTTTC 59.493 55.000 0.00 0.00 0.00 2.78
333 334 0.104304 AACACGGACGCAGAGTTTCT 59.896 50.000 0.00 0.00 0.00 2.52
334 335 0.597637 ACACGGACGCAGAGTTTCTG 60.598 55.000 1.75 1.75 46.90 3.02
342 343 2.157421 CAGAGTTTCTGCACCGAGC 58.843 57.895 0.00 0.00 37.72 5.03
343 344 0.320247 CAGAGTTTCTGCACCGAGCT 60.320 55.000 0.00 0.00 45.94 4.09
344 345 0.394565 AGAGTTTCTGCACCGAGCTT 59.605 50.000 0.00 0.00 45.94 3.74
345 346 0.514691 GAGTTTCTGCACCGAGCTTG 59.485 55.000 0.00 0.00 45.94 4.01
346 347 0.106708 AGTTTCTGCACCGAGCTTGA 59.893 50.000 1.22 0.00 45.94 3.02
347 348 0.944386 GTTTCTGCACCGAGCTTGAA 59.056 50.000 1.22 3.87 45.94 2.69
348 349 0.944386 TTTCTGCACCGAGCTTGAAC 59.056 50.000 1.22 0.00 45.94 3.18
349 350 0.179059 TTCTGCACCGAGCTTGAACA 60.179 50.000 1.22 0.00 45.94 3.18
350 351 0.601046 TCTGCACCGAGCTTGAACAG 60.601 55.000 1.22 6.99 45.94 3.16
351 352 0.882042 CTGCACCGAGCTTGAACAGT 60.882 55.000 1.22 0.00 45.94 3.55
352 353 0.391228 TGCACCGAGCTTGAACAGTA 59.609 50.000 1.22 0.00 45.94 2.74
353 354 1.202592 TGCACCGAGCTTGAACAGTAA 60.203 47.619 1.22 0.00 45.94 2.24
354 355 1.871039 GCACCGAGCTTGAACAGTAAA 59.129 47.619 1.22 0.00 41.15 2.01
355 356 2.289547 GCACCGAGCTTGAACAGTAAAA 59.710 45.455 1.22 0.00 41.15 1.52
356 357 3.058224 GCACCGAGCTTGAACAGTAAAAT 60.058 43.478 1.22 0.00 41.15 1.82
357 358 4.712763 CACCGAGCTTGAACAGTAAAATC 58.287 43.478 1.22 0.00 0.00 2.17
358 359 4.213270 CACCGAGCTTGAACAGTAAAATCA 59.787 41.667 1.22 0.00 0.00 2.57
359 360 4.452455 ACCGAGCTTGAACAGTAAAATCAG 59.548 41.667 1.22 0.00 0.00 2.90
360 361 4.690748 CCGAGCTTGAACAGTAAAATCAGA 59.309 41.667 1.22 0.00 0.00 3.27
361 362 5.179368 CCGAGCTTGAACAGTAAAATCAGAA 59.821 40.000 1.22 0.00 0.00 3.02
362 363 6.302615 CGAGCTTGAACAGTAAAATCAGAAG 58.697 40.000 0.00 0.00 0.00 2.85
363 364 6.146184 CGAGCTTGAACAGTAAAATCAGAAGA 59.854 38.462 0.00 0.00 0.00 2.87
364 365 7.307396 CGAGCTTGAACAGTAAAATCAGAAGAA 60.307 37.037 0.00 0.00 0.00 2.52
365 366 8.225603 AGCTTGAACAGTAAAATCAGAAGAAA 57.774 30.769 0.00 0.00 0.00 2.52
366 367 8.686334 AGCTTGAACAGTAAAATCAGAAGAAAA 58.314 29.630 0.00 0.00 0.00 2.29
367 368 9.301153 GCTTGAACAGTAAAATCAGAAGAAAAA 57.699 29.630 0.00 0.00 0.00 1.94
411 412 9.575783 TTTTTATCGACAAAAGTTTTAAGTGCT 57.424 25.926 1.40 0.00 0.00 4.40
412 413 9.575783 TTTTATCGACAAAAGTTTTAAGTGCTT 57.424 25.926 0.00 0.00 0.00 3.91
413 414 8.555166 TTATCGACAAAAGTTTTAAGTGCTTG 57.445 30.769 0.00 0.00 0.00 4.01
414 415 4.796312 TCGACAAAAGTTTTAAGTGCTTGC 59.204 37.500 0.00 0.00 0.00 4.01
415 416 4.316377 CGACAAAAGTTTTAAGTGCTTGCG 60.316 41.667 0.00 0.00 0.00 4.85
416 417 4.739195 ACAAAAGTTTTAAGTGCTTGCGA 58.261 34.783 0.00 0.00 0.00 5.10
417 418 5.164954 ACAAAAGTTTTAAGTGCTTGCGAA 58.835 33.333 0.00 0.00 0.00 4.70
418 419 5.635700 ACAAAAGTTTTAAGTGCTTGCGAAA 59.364 32.000 0.00 0.00 0.00 3.46
419 420 6.146347 ACAAAAGTTTTAAGTGCTTGCGAAAA 59.854 30.769 0.00 0.00 0.00 2.29
420 421 6.902224 AAAGTTTTAAGTGCTTGCGAAAAT 57.098 29.167 0.00 0.00 0.00 1.82
421 422 6.902224 AAGTTTTAAGTGCTTGCGAAAATT 57.098 29.167 0.00 0.00 0.00 1.82
422 423 6.510746 AGTTTTAAGTGCTTGCGAAAATTC 57.489 33.333 0.00 0.00 0.00 2.17
438 439 7.496704 CGAAAATTCGTCATGAAATCACATT 57.503 32.000 7.37 0.00 45.09 2.71
439 440 7.594850 CGAAAATTCGTCATGAAATCACATTC 58.405 34.615 7.37 0.00 45.09 2.67
440 441 7.253420 CGAAAATTCGTCATGAAATCACATTCC 60.253 37.037 7.37 0.00 45.09 3.01
441 442 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
442 443 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
443 444 7.864108 ATTCGTCATGAAATCACATTCCTAA 57.136 32.000 0.00 0.00 40.71 2.69
444 445 7.680442 TTCGTCATGAAATCACATTCCTAAA 57.320 32.000 0.00 0.00 32.37 1.85
445 446 7.680442 TCGTCATGAAATCACATTCCTAAAA 57.320 32.000 0.00 0.00 0.00 1.52
446 447 7.751732 TCGTCATGAAATCACATTCCTAAAAG 58.248 34.615 0.00 0.00 0.00 2.27
447 448 7.606073 TCGTCATGAAATCACATTCCTAAAAGA 59.394 33.333 0.00 0.00 0.00 2.52
448 449 7.693951 CGTCATGAAATCACATTCCTAAAAGAC 59.306 37.037 0.00 0.00 0.00 3.01
449 450 7.693951 GTCATGAAATCACATTCCTAAAAGACG 59.306 37.037 0.00 0.00 0.00 4.18
450 451 7.390440 TCATGAAATCACATTCCTAAAAGACGT 59.610 33.333 0.00 0.00 0.00 4.34
451 452 6.898041 TGAAATCACATTCCTAAAAGACGTG 58.102 36.000 0.00 0.00 0.00 4.49
452 453 5.880054 AATCACATTCCTAAAAGACGTGG 57.120 39.130 0.00 0.00 0.00 4.94
453 454 4.610605 TCACATTCCTAAAAGACGTGGA 57.389 40.909 0.00 0.00 0.00 4.02
454 455 4.963373 TCACATTCCTAAAAGACGTGGAA 58.037 39.130 5.37 5.37 41.96 3.53
455 456 5.369833 TCACATTCCTAAAAGACGTGGAAA 58.630 37.500 6.85 0.00 41.22 3.13
456 457 5.823570 TCACATTCCTAAAAGACGTGGAAAA 59.176 36.000 6.85 0.00 41.22 2.29
457 458 6.319152 TCACATTCCTAAAAGACGTGGAAAAA 59.681 34.615 6.85 0.00 41.22 1.94
481 482 7.801716 AAAACAGTACTCTGAAAATGCTACA 57.198 32.000 0.00 0.00 43.76 2.74
482 483 7.986085 AAACAGTACTCTGAAAATGCTACAT 57.014 32.000 0.00 0.00 43.76 2.29
483 484 7.986085 AACAGTACTCTGAAAATGCTACATT 57.014 32.000 0.00 0.00 43.76 2.71
484 485 7.602517 ACAGTACTCTGAAAATGCTACATTC 57.397 36.000 0.00 0.00 43.76 2.67
485 486 7.161404 ACAGTACTCTGAAAATGCTACATTCA 58.839 34.615 0.00 0.00 43.76 2.57
486 487 7.661437 ACAGTACTCTGAAAATGCTACATTCAA 59.339 33.333 0.00 0.00 43.76 2.69
487 488 8.506437 CAGTACTCTGAAAATGCTACATTCAAA 58.494 33.333 0.00 0.00 43.76 2.69
488 489 9.066892 AGTACTCTGAAAATGCTACATTCAAAA 57.933 29.630 0.00 0.00 33.08 2.44
489 490 9.334693 GTACTCTGAAAATGCTACATTCAAAAG 57.665 33.333 0.00 0.00 33.08 2.27
490 491 6.865205 ACTCTGAAAATGCTACATTCAAAAGC 59.135 34.615 0.00 0.00 33.08 3.51
491 492 5.858049 TCTGAAAATGCTACATTCAAAAGCG 59.142 36.000 0.00 0.00 39.14 4.68
492 493 5.527951 TGAAAATGCTACATTCAAAAGCGT 58.472 33.333 0.00 0.00 39.14 5.07
493 494 5.982516 TGAAAATGCTACATTCAAAAGCGTT 59.017 32.000 0.00 0.00 45.04 4.84
505 506 3.502191 AAAAGCGTTTTGAAGCACTGA 57.498 38.095 0.00 0.00 35.48 3.41
506 507 3.502191 AAAGCGTTTTGAAGCACTGAA 57.498 38.095 0.00 0.00 35.48 3.02
507 508 3.715628 AAGCGTTTTGAAGCACTGAAT 57.284 38.095 0.00 0.00 35.48 2.57
508 509 3.715628 AGCGTTTTGAAGCACTGAATT 57.284 38.095 0.00 0.00 35.48 2.17
509 510 3.374745 AGCGTTTTGAAGCACTGAATTG 58.625 40.909 0.00 0.00 35.48 2.32
510 511 3.115554 GCGTTTTGAAGCACTGAATTGT 58.884 40.909 0.00 0.00 0.00 2.71
511 512 3.551485 GCGTTTTGAAGCACTGAATTGTT 59.449 39.130 0.00 0.00 0.00 2.83
512 513 4.032786 GCGTTTTGAAGCACTGAATTGTTT 59.967 37.500 0.00 0.00 0.00 2.83
513 514 5.445806 GCGTTTTGAAGCACTGAATTGTTTT 60.446 36.000 0.00 0.00 0.00 2.43
514 515 6.533185 CGTTTTGAAGCACTGAATTGTTTTT 58.467 32.000 0.00 0.00 0.00 1.94
541 542 4.802876 TTTTTGCCACGCCTTAAAAATG 57.197 36.364 0.00 0.00 29.87 2.32
542 543 3.460857 TTTGCCACGCCTTAAAAATGT 57.539 38.095 0.00 0.00 0.00 2.71
543 544 2.430546 TGCCACGCCTTAAAAATGTG 57.569 45.000 0.00 0.00 0.00 3.21
544 545 1.957177 TGCCACGCCTTAAAAATGTGA 59.043 42.857 0.00 0.00 32.39 3.58
545 546 2.560542 TGCCACGCCTTAAAAATGTGAT 59.439 40.909 0.00 0.00 32.39 3.06
546 547 3.006323 TGCCACGCCTTAAAAATGTGATT 59.994 39.130 0.00 0.00 32.39 2.57
547 548 3.612423 GCCACGCCTTAAAAATGTGATTC 59.388 43.478 0.00 0.00 32.39 2.52
548 549 4.173256 CCACGCCTTAAAAATGTGATTCC 58.827 43.478 0.00 0.00 32.39 3.01
549 550 4.321601 CCACGCCTTAAAAATGTGATTCCA 60.322 41.667 0.00 0.00 32.39 3.53
550 551 4.621034 CACGCCTTAAAAATGTGATTCCAC 59.379 41.667 0.00 0.00 43.46 4.02
551 552 4.173256 CGCCTTAAAAATGTGATTCCACC 58.827 43.478 0.00 0.00 42.53 4.61
552 553 4.321601 CGCCTTAAAAATGTGATTCCACCA 60.322 41.667 0.00 0.00 42.53 4.17
553 554 4.929211 GCCTTAAAAATGTGATTCCACCAC 59.071 41.667 0.00 0.00 42.53 4.16
554 555 5.510520 GCCTTAAAAATGTGATTCCACCACA 60.511 40.000 0.00 0.00 46.90 4.17
555 556 6.520272 CCTTAAAAATGTGATTCCACCACAA 58.480 36.000 0.00 0.00 46.12 3.33
556 557 6.989169 CCTTAAAAATGTGATTCCACCACAAA 59.011 34.615 0.00 0.00 46.12 2.83
557 558 7.661027 CCTTAAAAATGTGATTCCACCACAAAT 59.339 33.333 0.00 0.00 46.12 2.32
558 559 8.970859 TTAAAAATGTGATTCCACCACAAATT 57.029 26.923 0.00 0.00 46.12 1.82
559 560 7.878547 AAAAATGTGATTCCACCACAAATTT 57.121 28.000 0.00 0.00 46.12 1.82
560 561 7.878547 AAAATGTGATTCCACCACAAATTTT 57.121 28.000 0.00 0.00 46.12 1.82
561 562 7.878547 AAATGTGATTCCACCACAAATTTTT 57.121 28.000 0.00 0.00 46.12 1.94
562 563 6.864360 ATGTGATTCCACCACAAATTTTTG 57.136 33.333 0.00 1.56 46.12 2.44
563 564 4.574013 TGTGATTCCACCACAAATTTTTGC 59.426 37.500 3.00 0.00 41.07 3.68
564 565 4.574013 GTGATTCCACCACAAATTTTTGCA 59.426 37.500 3.00 0.00 38.22 4.08
565 566 5.065731 GTGATTCCACCACAAATTTTTGCAA 59.934 36.000 0.00 0.00 38.22 4.08
566 567 5.296283 TGATTCCACCACAAATTTTTGCAAG 59.704 36.000 0.00 0.00 41.79 4.01
567 568 2.941720 TCCACCACAAATTTTTGCAAGC 59.058 40.909 0.00 0.00 41.79 4.01
568 569 2.681848 CCACCACAAATTTTTGCAAGCA 59.318 40.909 0.00 0.00 41.79 3.91
569 570 3.487209 CCACCACAAATTTTTGCAAGCAC 60.487 43.478 0.00 0.00 41.79 4.40
570 571 3.374678 CACCACAAATTTTTGCAAGCACT 59.625 39.130 0.00 0.00 41.79 4.40
571 572 4.009002 ACCACAAATTTTTGCAAGCACTT 58.991 34.783 0.00 0.00 41.79 3.16
572 573 5.064452 CACCACAAATTTTTGCAAGCACTTA 59.936 36.000 0.00 0.00 41.79 2.24
573 574 5.294060 ACCACAAATTTTTGCAAGCACTTAG 59.706 36.000 0.00 0.00 41.79 2.18
574 575 5.523188 CCACAAATTTTTGCAAGCACTTAGA 59.477 36.000 0.00 0.00 41.79 2.10
575 576 6.036953 CCACAAATTTTTGCAAGCACTTAGAA 59.963 34.615 0.00 0.00 41.79 2.10
576 577 6.901357 CACAAATTTTTGCAAGCACTTAGAAC 59.099 34.615 0.00 0.00 41.79 3.01
577 578 6.818142 ACAAATTTTTGCAAGCACTTAGAACT 59.182 30.769 0.00 0.00 41.79 3.01
578 579 7.334171 ACAAATTTTTGCAAGCACTTAGAACTT 59.666 29.630 0.00 0.00 41.79 2.66
579 580 7.848223 AATTTTTGCAAGCACTTAGAACTTT 57.152 28.000 0.00 0.00 0.00 2.66
580 581 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
581 582 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
582 583 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
583 584 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
584 585 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
585 586 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
586 587 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
587 588 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
588 589 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
589 590 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
590 591 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
591 592 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
592 593 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
593 594 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
594 595 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
595 596 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
596 597 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
597 598 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
598 599 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
599 600 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
600 601 6.818142 ACTTTTGTCAATGTTTCTCCCAAAAG 59.182 34.615 16.19 16.19 46.23 2.27
601 602 6.537453 TTTGTCAATGTTTCTCCCAAAAGA 57.463 33.333 0.00 0.00 0.00 2.52
602 603 6.537453 TTGTCAATGTTTCTCCCAAAAGAA 57.463 33.333 0.00 0.00 33.50 2.52
603 604 6.537453 TGTCAATGTTTCTCCCAAAAGAAA 57.463 33.333 0.00 0.00 41.70 2.52
604 605 7.123355 TGTCAATGTTTCTCCCAAAAGAAAT 57.877 32.000 2.72 0.00 44.64 2.17
605 606 7.563906 TGTCAATGTTTCTCCCAAAAGAAATT 58.436 30.769 2.72 0.00 44.64 1.82
606 607 7.495279 TGTCAATGTTTCTCCCAAAAGAAATTG 59.505 33.333 2.72 4.90 44.64 2.32
607 608 6.991531 TCAATGTTTCTCCCAAAAGAAATTGG 59.008 34.615 2.72 0.00 44.64 3.16
627 628 9.934190 AAATTGGATTTTTCTGAAAACATTTCG 57.066 25.926 14.70 0.00 37.56 3.46
628 629 8.885494 ATTGGATTTTTCTGAAAACATTTCGA 57.115 26.923 14.70 5.36 37.56 3.71
629 630 7.928908 TGGATTTTTCTGAAAACATTTCGAG 57.071 32.000 14.70 0.00 37.56 4.04
630 631 6.420604 TGGATTTTTCTGAAAACATTTCGAGC 59.579 34.615 14.70 2.18 37.56 5.03
631 632 6.420604 GGATTTTTCTGAAAACATTTCGAGCA 59.579 34.615 14.70 0.00 37.56 4.26
632 633 6.810888 TTTTTCTGAAAACATTTCGAGCAG 57.189 33.333 14.70 0.00 30.07 4.24
633 634 5.749596 TTTCTGAAAACATTTCGAGCAGA 57.250 34.783 0.00 0.00 0.00 4.26
634 635 5.749596 TTCTGAAAACATTTCGAGCAGAA 57.250 34.783 0.00 0.00 38.23 3.02
635 636 7.543868 TTTTTCTGAAAACATTTCGAGCAGAAA 59.456 29.630 14.70 0.00 44.38 2.52
643 644 3.988379 TTTCGAGCAGAAATGCACTTT 57.012 38.095 2.73 0.00 43.35 2.66
644 645 3.542712 TTCGAGCAGAAATGCACTTTC 57.457 42.857 11.41 11.41 43.07 2.62
645 646 1.460743 TCGAGCAGAAATGCACTTTCG 59.539 47.619 12.75 3.44 46.53 3.46
651 652 3.303990 GCAGAAATGCACTTTCGTCTGAA 60.304 43.478 11.93 0.00 46.53 3.02
705 706 2.509561 GCGCCTTTCTCCCTCGAC 60.510 66.667 0.00 0.00 0.00 4.20
756 757 0.823769 CATCTCGATCCGTCCCTCCA 60.824 60.000 0.00 0.00 0.00 3.86
796 797 1.361204 TGCAAACATCTCCCTCTCCA 58.639 50.000 0.00 0.00 0.00 3.86
966 967 1.006102 CCTCTCCAACGACAACGCT 60.006 57.895 0.00 0.00 43.96 5.07
982 983 0.248255 CGCTGACGACATCGACATCT 60.248 55.000 8.54 0.00 42.29 2.90
1198 1199 2.746277 GCGCCAAGATGGACCGTT 60.746 61.111 0.00 0.00 40.96 4.44
1468 1469 1.270094 GCCCCTACAGGTTTGCAAAAC 60.270 52.381 19.75 19.75 0.00 2.43
1471 1472 2.296190 CCCTACAGGTTTGCAAAACTCC 59.704 50.000 26.70 17.13 32.57 3.85
1493 1552 9.048446 ACTCCAGAAATTTCAATCAAAATGTTG 57.952 29.630 19.99 5.05 35.95 3.33
1501 1560 2.330231 ATCAAAATGTTGCGACACGG 57.670 45.000 9.51 0.00 38.91 4.94
1523 1598 5.608146 GGCACGTGATTTAAATTTTGAAGC 58.392 37.500 22.23 0.00 0.00 3.86
1525 1600 5.665217 GCACGTGATTTAAATTTTGAAGCGG 60.665 40.000 22.23 0.00 0.00 5.52
1670 1749 2.738147 CGAGTACTGGTTCGCCTTG 58.262 57.895 0.00 0.00 38.36 3.61
1916 1995 3.311322 AGAAGCTCTTCGTCTACATCTCG 59.689 47.826 4.19 0.00 43.97 4.04
2015 2094 2.169789 CAAGCACTCCATCGAGCCG 61.170 63.158 0.00 0.00 40.03 5.52
2357 2448 0.984230 TCCAGGTCTCCATCAACACC 59.016 55.000 0.00 0.00 0.00 4.16
2373 2464 0.515564 CACCGACCATTCCGTTTCAC 59.484 55.000 0.00 0.00 0.00 3.18
2375 2466 1.231221 CCGACCATTCCGTTTCACAA 58.769 50.000 0.00 0.00 0.00 3.33
2376 2467 1.196808 CCGACCATTCCGTTTCACAAG 59.803 52.381 0.00 0.00 0.00 3.16
2425 2573 3.924073 TCATGTTACGATCTTGTCAACCG 59.076 43.478 0.00 0.00 0.00 4.44
2448 2602 5.684704 GATTAGGTGATGATCAAGAACCCA 58.315 41.667 16.93 5.38 0.00 4.51
2454 2608 3.010472 TGATGATCAAGAACCCACACCAT 59.990 43.478 0.00 0.00 0.00 3.55
2625 2779 1.375523 GTCCGCGGTCTTGTCCAAT 60.376 57.895 27.15 0.00 0.00 3.16
2946 3100 2.751688 GTCGGCCAAACCAGGGTA 59.248 61.111 2.24 0.00 39.03 3.69
3090 3298 3.001406 GTGGCCGAGTACCAGGGT 61.001 66.667 0.00 0.00 38.04 4.34
3648 3856 2.262603 CTCGTGCTGCTGTGCCTA 59.737 61.111 0.00 0.00 0.00 3.93
3672 3880 0.042131 AGGTGAAGTGGTCCGGGATA 59.958 55.000 0.00 0.00 0.00 2.59
4165 4379 1.153549 GGCATCGAGGTGTGAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
4166 4380 1.608717 GGCATCGAGGTGTGAGGACT 61.609 60.000 0.00 0.00 0.00 3.85
4167 4381 0.179124 GCATCGAGGTGTGAGGACTC 60.179 60.000 0.00 0.00 0.00 3.36
4191 4410 0.871592 CAGGAAATCGATCGAGCGCA 60.872 55.000 23.84 7.98 0.00 6.09
4248 4487 3.494626 TCAGCTACGAAGTGCAGAAAAAG 59.505 43.478 0.00 0.00 45.73 2.27
4264 4510 4.339530 AGAAAAAGAACAGCTTGGAGAACC 59.660 41.667 0.00 0.00 36.80 3.62
4387 4639 2.901839 AGCTGGGAAAAGAACGTACCTA 59.098 45.455 0.00 0.00 0.00 3.08
4388 4640 2.998670 GCTGGGAAAAGAACGTACCTAC 59.001 50.000 0.00 0.00 0.00 3.18
4413 4665 2.330440 ACGCACTGATATCATGGCAA 57.670 45.000 21.58 0.00 0.00 4.52
4414 4666 1.942657 ACGCACTGATATCATGGCAAC 59.057 47.619 21.58 4.64 0.00 4.17
4434 4686 5.352569 GCAACATGGCATACATATACTCCTC 59.647 44.000 0.00 0.00 37.84 3.71
4435 4687 6.466812 CAACATGGCATACATATACTCCTCA 58.533 40.000 0.00 0.00 37.84 3.86
4511 8135 4.210328 TCGTTGCACATTGCCGTATATTAG 59.790 41.667 0.00 0.00 44.23 1.73
4609 8240 7.011773 CACTGATCTCAAGTTTTACATTCGTG 58.988 38.462 0.00 0.00 0.00 4.35
4645 8276 2.618053 CTCGAGGACCAACATTGTACC 58.382 52.381 3.91 0.00 0.00 3.34
4663 8294 5.329399 TGTACCACTTGATTAGGGCATTTT 58.671 37.500 0.00 0.00 0.00 1.82
4668 8299 4.858692 CACTTGATTAGGGCATTTTCAACG 59.141 41.667 0.00 0.00 0.00 4.10
4669 8300 4.082245 ACTTGATTAGGGCATTTTCAACGG 60.082 41.667 0.00 0.00 0.00 4.44
4670 8301 3.691575 TGATTAGGGCATTTTCAACGGA 58.308 40.909 0.00 0.00 0.00 4.69
4671 8302 3.442273 TGATTAGGGCATTTTCAACGGAC 59.558 43.478 0.00 0.00 0.00 4.79
4672 8303 1.828979 TAGGGCATTTTCAACGGACC 58.171 50.000 0.00 0.00 0.00 4.46
4674 8305 0.898326 GGGCATTTTCAACGGACCCT 60.898 55.000 0.00 0.00 32.88 4.34
4676 8307 1.243902 GCATTTTCAACGGACCCTCA 58.756 50.000 0.00 0.00 0.00 3.86
4677 8308 1.611491 GCATTTTCAACGGACCCTCAA 59.389 47.619 0.00 0.00 0.00 3.02
4680 8311 1.682740 TTTCAACGGACCCTCAAACC 58.317 50.000 0.00 0.00 0.00 3.27
4691 8322 2.808958 CTCAAACCGCCCGCATACG 61.809 63.158 0.00 0.00 39.67 3.06
4693 8324 2.816520 AAACCGCCCGCATACGTC 60.817 61.111 0.00 0.00 37.70 4.34
4712 8343 1.226974 CGGATCGCGTTGTCTGGAT 60.227 57.895 5.77 0.00 0.00 3.41
4731 8362 0.106769 TGTGTTGTGCCATCCAGTGT 60.107 50.000 0.00 0.00 0.00 3.55
4765 8396 3.550656 CCGAGCGGTTCAGTTCAC 58.449 61.111 0.00 0.00 0.00 3.18
4788 8419 4.543590 TTTTTCTGGCAAACTGAAACCA 57.456 36.364 0.00 0.00 43.75 3.67
4789 8420 4.543590 TTTTCTGGCAAACTGAAACCAA 57.456 36.364 0.00 0.00 43.75 3.67
5141 8772 2.861462 CAAAAGACAACCGGAGCAAA 57.139 45.000 9.46 0.00 0.00 3.68
5142 8773 3.369546 CAAAAGACAACCGGAGCAAAT 57.630 42.857 9.46 0.00 0.00 2.32
5143 8774 3.716601 CAAAAGACAACCGGAGCAAATT 58.283 40.909 9.46 0.00 0.00 1.82
5144 8775 4.119136 CAAAAGACAACCGGAGCAAATTT 58.881 39.130 9.46 0.00 0.00 1.82
5145 8776 4.400529 AAAGACAACCGGAGCAAATTTT 57.599 36.364 9.46 0.00 0.00 1.82
5146 8777 3.369546 AGACAACCGGAGCAAATTTTG 57.630 42.857 9.46 1.26 0.00 2.44
5147 8778 2.693074 AGACAACCGGAGCAAATTTTGT 59.307 40.909 9.46 5.30 0.00 2.83
5148 8779 2.794350 GACAACCGGAGCAAATTTTGTG 59.206 45.455 9.46 2.28 0.00 3.33
5149 8780 2.134346 CAACCGGAGCAAATTTTGTGG 58.866 47.619 9.46 9.70 0.00 4.17
5150 8781 0.678950 ACCGGAGCAAATTTTGTGGG 59.321 50.000 9.46 8.95 0.00 4.61
5151 8782 0.678950 CCGGAGCAAATTTTGTGGGT 59.321 50.000 10.65 0.00 0.00 4.51
5152 8783 1.336795 CCGGAGCAAATTTTGTGGGTC 60.337 52.381 10.65 0.65 0.00 4.46
5153 8784 1.339610 CGGAGCAAATTTTGTGGGTCA 59.660 47.619 10.65 0.00 0.00 4.02
5154 8785 2.607771 CGGAGCAAATTTTGTGGGTCAG 60.608 50.000 10.65 1.07 0.00 3.51
5155 8786 2.365293 GGAGCAAATTTTGTGGGTCAGT 59.635 45.455 10.65 0.00 0.00 3.41
5156 8787 3.383761 GAGCAAATTTTGTGGGTCAGTG 58.616 45.455 10.65 0.00 0.00 3.66
5157 8788 2.765699 AGCAAATTTTGTGGGTCAGTGT 59.234 40.909 10.65 0.00 0.00 3.55
5158 8789 3.197549 AGCAAATTTTGTGGGTCAGTGTT 59.802 39.130 10.65 0.00 0.00 3.32
5159 8790 3.309410 GCAAATTTTGTGGGTCAGTGTTG 59.691 43.478 10.65 0.00 0.00 3.33
5160 8791 4.753233 CAAATTTTGTGGGTCAGTGTTGA 58.247 39.130 0.78 0.00 0.00 3.18
5161 8792 5.174395 CAAATTTTGTGGGTCAGTGTTGAA 58.826 37.500 0.78 0.00 34.49 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.003548 GGGTCCCAGCCCTTGATCT 61.004 63.158 1.78 0.00 45.22 2.75
1 2 2.597903 GGGTCCCAGCCCTTGATC 59.402 66.667 1.78 0.00 45.22 2.92
16 17 2.446666 TGATTAATGATCACCCAGGGGG 59.553 50.000 11.37 5.67 39.83 5.40
17 18 3.882102 TGATTAATGATCACCCAGGGG 57.118 47.619 11.37 6.87 39.83 4.79
18 19 7.838079 TTTATTGATTAATGATCACCCAGGG 57.162 36.000 2.85 2.85 44.28 4.45
19 20 8.143835 GGTTTTATTGATTAATGATCACCCAGG 58.856 37.037 0.00 0.00 44.28 4.45
20 21 8.917088 AGGTTTTATTGATTAATGATCACCCAG 58.083 33.333 0.00 0.00 44.28 4.45
21 22 8.837099 AGGTTTTATTGATTAATGATCACCCA 57.163 30.769 0.00 0.00 44.28 4.51
32 33 8.726988 GCACAACTCACTAGGTTTTATTGATTA 58.273 33.333 0.00 0.00 0.00 1.75
33 34 7.448469 AGCACAACTCACTAGGTTTTATTGATT 59.552 33.333 0.00 0.00 0.00 2.57
34 35 6.942576 AGCACAACTCACTAGGTTTTATTGAT 59.057 34.615 0.00 0.00 0.00 2.57
35 36 6.296026 AGCACAACTCACTAGGTTTTATTGA 58.704 36.000 0.00 0.00 0.00 2.57
36 37 6.560253 AGCACAACTCACTAGGTTTTATTG 57.440 37.500 0.00 0.00 0.00 1.90
37 38 8.685838 TTTAGCACAACTCACTAGGTTTTATT 57.314 30.769 0.00 0.00 0.00 1.40
38 39 8.685838 TTTTAGCACAACTCACTAGGTTTTAT 57.314 30.769 0.00 0.00 0.00 1.40
39 40 8.508883 TTTTTAGCACAACTCACTAGGTTTTA 57.491 30.769 0.00 0.00 0.00 1.52
40 41 7.399245 TTTTTAGCACAACTCACTAGGTTTT 57.601 32.000 0.00 0.00 0.00 2.43
41 42 7.284489 TCATTTTTAGCACAACTCACTAGGTTT 59.716 33.333 0.00 0.00 0.00 3.27
42 43 6.770785 TCATTTTTAGCACAACTCACTAGGTT 59.229 34.615 0.00 0.00 0.00 3.50
43 44 6.296026 TCATTTTTAGCACAACTCACTAGGT 58.704 36.000 0.00 0.00 0.00 3.08
44 45 6.801539 TCATTTTTAGCACAACTCACTAGG 57.198 37.500 0.00 0.00 0.00 3.02
45 46 8.032952 TCATCATTTTTAGCACAACTCACTAG 57.967 34.615 0.00 0.00 0.00 2.57
46 47 7.977789 TCATCATTTTTAGCACAACTCACTA 57.022 32.000 0.00 0.00 0.00 2.74
47 48 6.882610 TCATCATTTTTAGCACAACTCACT 57.117 33.333 0.00 0.00 0.00 3.41
48 49 8.430063 CAATTCATCATTTTTAGCACAACTCAC 58.570 33.333 0.00 0.00 0.00 3.51
49 50 8.143193 ACAATTCATCATTTTTAGCACAACTCA 58.857 29.630 0.00 0.00 0.00 3.41
50 51 8.524870 ACAATTCATCATTTTTAGCACAACTC 57.475 30.769 0.00 0.00 0.00 3.01
51 52 7.326789 CGACAATTCATCATTTTTAGCACAACT 59.673 33.333 0.00 0.00 0.00 3.16
52 53 7.325821 TCGACAATTCATCATTTTTAGCACAAC 59.674 33.333 0.00 0.00 0.00 3.32
53 54 7.366513 TCGACAATTCATCATTTTTAGCACAA 58.633 30.769 0.00 0.00 0.00 3.33
54 55 6.907741 TCGACAATTCATCATTTTTAGCACA 58.092 32.000 0.00 0.00 0.00 4.57
55 56 7.795431 TTCGACAATTCATCATTTTTAGCAC 57.205 32.000 0.00 0.00 0.00 4.40
60 61 9.520204 GGTGATATTCGACAATTCATCATTTTT 57.480 29.630 0.00 0.00 0.00 1.94
61 62 8.906867 AGGTGATATTCGACAATTCATCATTTT 58.093 29.630 0.00 0.00 0.00 1.82
62 63 8.455903 AGGTGATATTCGACAATTCATCATTT 57.544 30.769 0.00 0.00 0.00 2.32
63 64 8.455903 AAGGTGATATTCGACAATTCATCATT 57.544 30.769 0.00 0.00 0.00 2.57
64 65 8.455903 AAAGGTGATATTCGACAATTCATCAT 57.544 30.769 0.00 0.00 0.00 2.45
65 66 7.864108 AAAGGTGATATTCGACAATTCATCA 57.136 32.000 0.00 0.00 0.00 3.07
105 106 6.909550 AAATAGGACTGCCACATACAAAAA 57.090 33.333 0.00 0.00 36.29 1.94
106 107 6.071616 GGAAAATAGGACTGCCACATACAAAA 60.072 38.462 0.00 0.00 36.29 2.44
107 108 5.417580 GGAAAATAGGACTGCCACATACAAA 59.582 40.000 0.00 0.00 36.29 2.83
108 109 4.947388 GGAAAATAGGACTGCCACATACAA 59.053 41.667 0.00 0.00 36.29 2.41
109 110 4.227300 AGGAAAATAGGACTGCCACATACA 59.773 41.667 0.00 0.00 36.29 2.29
110 111 4.781934 AGGAAAATAGGACTGCCACATAC 58.218 43.478 0.00 0.00 36.29 2.39
111 112 5.437060 GAAGGAAAATAGGACTGCCACATA 58.563 41.667 0.00 0.00 36.29 2.29
112 113 4.273318 GAAGGAAAATAGGACTGCCACAT 58.727 43.478 0.00 0.00 36.29 3.21
113 114 3.561313 GGAAGGAAAATAGGACTGCCACA 60.561 47.826 0.00 0.00 36.29 4.17
114 115 3.017442 GGAAGGAAAATAGGACTGCCAC 58.983 50.000 0.00 0.00 36.29 5.01
115 116 2.025321 GGGAAGGAAAATAGGACTGCCA 60.025 50.000 0.00 0.00 36.29 4.92
116 117 2.242452 AGGGAAGGAAAATAGGACTGCC 59.758 50.000 0.00 0.00 0.00 4.85
117 118 3.653835 AGGGAAGGAAAATAGGACTGC 57.346 47.619 0.00 0.00 0.00 4.40
118 119 5.336770 GCAAAAGGGAAGGAAAATAGGACTG 60.337 44.000 0.00 0.00 0.00 3.51
119 120 4.772624 GCAAAAGGGAAGGAAAATAGGACT 59.227 41.667 0.00 0.00 0.00 3.85
120 121 4.526650 TGCAAAAGGGAAGGAAAATAGGAC 59.473 41.667 0.00 0.00 0.00 3.85
121 122 4.526650 GTGCAAAAGGGAAGGAAAATAGGA 59.473 41.667 0.00 0.00 0.00 2.94
122 123 4.283212 TGTGCAAAAGGGAAGGAAAATAGG 59.717 41.667 0.00 0.00 0.00 2.57
123 124 5.467035 TGTGCAAAAGGGAAGGAAAATAG 57.533 39.130 0.00 0.00 0.00 1.73
124 125 7.234577 AGTTATGTGCAAAAGGGAAGGAAAATA 59.765 33.333 0.00 0.00 0.00 1.40
125 126 4.980339 ATGTGCAAAAGGGAAGGAAAAT 57.020 36.364 0.00 0.00 0.00 1.82
126 127 5.365314 AGTTATGTGCAAAAGGGAAGGAAAA 59.635 36.000 0.00 0.00 0.00 2.29
127 128 4.898861 AGTTATGTGCAAAAGGGAAGGAAA 59.101 37.500 0.00 0.00 0.00 3.13
128 129 4.479158 AGTTATGTGCAAAAGGGAAGGAA 58.521 39.130 0.00 0.00 0.00 3.36
129 130 4.112634 AGTTATGTGCAAAAGGGAAGGA 57.887 40.909 0.00 0.00 0.00 3.36
130 131 5.975693 TTAGTTATGTGCAAAAGGGAAGG 57.024 39.130 0.00 0.00 0.00 3.46
131 132 9.921637 TTAAATTAGTTATGTGCAAAAGGGAAG 57.078 29.630 0.00 0.00 0.00 3.46
133 134 9.921637 CTTTAAATTAGTTATGTGCAAAAGGGA 57.078 29.630 0.00 0.00 0.00 4.20
134 135 9.921637 TCTTTAAATTAGTTATGTGCAAAAGGG 57.078 29.630 0.00 0.00 0.00 3.95
157 158 8.866956 CGTGTTCTAAACGGTCTTATATTTCTT 58.133 33.333 0.00 0.00 37.39 2.52
158 159 8.246180 TCGTGTTCTAAACGGTCTTATATTTCT 58.754 33.333 0.00 0.00 41.34 2.52
159 160 8.398491 TCGTGTTCTAAACGGTCTTATATTTC 57.602 34.615 0.00 0.00 41.34 2.17
160 161 8.761575 TTCGTGTTCTAAACGGTCTTATATTT 57.238 30.769 0.00 0.00 41.34 1.40
161 162 8.761575 TTTCGTGTTCTAAACGGTCTTATATT 57.238 30.769 0.00 0.00 41.34 1.28
162 163 8.031277 ACTTTCGTGTTCTAAACGGTCTTATAT 58.969 33.333 0.00 0.00 41.34 0.86
163 164 7.370383 ACTTTCGTGTTCTAAACGGTCTTATA 58.630 34.615 0.00 0.00 41.34 0.98
164 165 6.218746 ACTTTCGTGTTCTAAACGGTCTTAT 58.781 36.000 0.00 0.00 41.34 1.73
165 166 5.591099 ACTTTCGTGTTCTAAACGGTCTTA 58.409 37.500 0.00 0.00 41.34 2.10
166 167 4.436332 ACTTTCGTGTTCTAAACGGTCTT 58.564 39.130 0.00 0.00 41.34 3.01
167 168 4.050852 ACTTTCGTGTTCTAAACGGTCT 57.949 40.909 0.00 0.00 41.34 3.85
168 169 5.888412 TTACTTTCGTGTTCTAAACGGTC 57.112 39.130 0.00 0.00 41.34 4.79
169 170 5.984926 TCATTACTTTCGTGTTCTAAACGGT 59.015 36.000 0.00 0.00 41.34 4.83
170 171 6.456447 TCATTACTTTCGTGTTCTAAACGG 57.544 37.500 0.00 0.00 41.34 4.44
171 172 7.950236 AGATCATTACTTTCGTGTTCTAAACG 58.050 34.615 0.00 0.00 42.36 3.60
175 176 9.069078 CGTTTAGATCATTACTTTCGTGTTCTA 57.931 33.333 0.00 0.00 0.00 2.10
176 177 7.411588 GCGTTTAGATCATTACTTTCGTGTTCT 60.412 37.037 0.00 0.00 0.00 3.01
177 178 6.677411 GCGTTTAGATCATTACTTTCGTGTTC 59.323 38.462 0.00 0.00 0.00 3.18
178 179 6.367969 AGCGTTTAGATCATTACTTTCGTGTT 59.632 34.615 0.00 0.00 0.00 3.32
179 180 5.867716 AGCGTTTAGATCATTACTTTCGTGT 59.132 36.000 0.00 0.00 0.00 4.49
180 181 6.253727 AGAGCGTTTAGATCATTACTTTCGTG 59.746 38.462 0.00 0.00 37.82 4.35
181 182 6.331061 AGAGCGTTTAGATCATTACTTTCGT 58.669 36.000 0.00 0.00 37.82 3.85
182 183 6.814076 AGAGCGTTTAGATCATTACTTTCG 57.186 37.500 0.00 0.00 37.82 3.46
198 199 8.665685 CCTCTGTAAACAAAATATAAGAGCGTT 58.334 33.333 0.00 0.00 0.00 4.84
199 200 7.280205 CCCTCTGTAAACAAAATATAAGAGCGT 59.720 37.037 0.00 0.00 0.00 5.07
200 201 7.494625 TCCCTCTGTAAACAAAATATAAGAGCG 59.505 37.037 0.00 0.00 0.00 5.03
201 202 8.732746 TCCCTCTGTAAACAAAATATAAGAGC 57.267 34.615 0.00 0.00 0.00 4.09
240 241 9.463443 GCAAAGTTTTCAAAGATTACATGTACT 57.537 29.630 4.68 0.00 0.00 2.73
241 242 9.243637 TGCAAAGTTTTCAAAGATTACATGTAC 57.756 29.630 4.68 0.00 0.00 2.90
242 243 9.979578 ATGCAAAGTTTTCAAAGATTACATGTA 57.020 25.926 0.08 0.08 0.00 2.29
243 244 8.767085 CATGCAAAGTTTTCAAAGATTACATGT 58.233 29.630 2.69 2.69 0.00 3.21
244 245 7.742963 GCATGCAAAGTTTTCAAAGATTACATG 59.257 33.333 14.21 0.00 33.57 3.21
245 246 7.441760 TGCATGCAAAGTTTTCAAAGATTACAT 59.558 29.630 20.30 0.00 0.00 2.29
246 247 6.760298 TGCATGCAAAGTTTTCAAAGATTACA 59.240 30.769 20.30 0.00 0.00 2.41
247 248 7.176285 TGCATGCAAAGTTTTCAAAGATTAC 57.824 32.000 20.30 0.00 0.00 1.89
248 249 7.798801 CATGCATGCAAAGTTTTCAAAGATTA 58.201 30.769 26.68 0.00 0.00 1.75
249 250 6.664515 CATGCATGCAAAGTTTTCAAAGATT 58.335 32.000 26.68 0.00 0.00 2.40
250 251 6.236017 CATGCATGCAAAGTTTTCAAAGAT 57.764 33.333 26.68 0.00 0.00 2.40
251 252 5.660629 CATGCATGCAAAGTTTTCAAAGA 57.339 34.783 26.68 0.00 0.00 2.52
266 267 2.277692 CGCTGTTCGGCATGCATG 60.278 61.111 22.70 22.70 33.78 4.06
275 276 1.497991 TCTTTCTTGTCCGCTGTTCG 58.502 50.000 0.00 0.00 38.08 3.95
276 277 4.467735 GAATTCTTTCTTGTCCGCTGTTC 58.532 43.478 0.00 0.00 0.00 3.18
277 278 3.253432 GGAATTCTTTCTTGTCCGCTGTT 59.747 43.478 5.23 0.00 32.16 3.16
278 279 2.814336 GGAATTCTTTCTTGTCCGCTGT 59.186 45.455 5.23 0.00 32.16 4.40
279 280 3.077359 AGGAATTCTTTCTTGTCCGCTG 58.923 45.455 5.23 0.00 33.38 5.18
280 281 3.077359 CAGGAATTCTTTCTTGTCCGCT 58.923 45.455 5.23 0.00 34.99 5.52
281 282 3.074412 TCAGGAATTCTTTCTTGTCCGC 58.926 45.455 5.23 0.00 39.34 5.54
282 283 5.689383 TTTCAGGAATTCTTTCTTGTCCG 57.311 39.130 5.23 0.00 39.34 4.79
283 284 6.450545 CCTTTTCAGGAATTCTTTCTTGTCC 58.549 40.000 5.23 0.00 44.19 4.02
298 299 3.189287 CCGTGTTCAGATTCCTTTTCAGG 59.811 47.826 0.00 0.00 42.50 3.86
299 300 4.065088 TCCGTGTTCAGATTCCTTTTCAG 58.935 43.478 0.00 0.00 0.00 3.02
300 301 3.813166 GTCCGTGTTCAGATTCCTTTTCA 59.187 43.478 0.00 0.00 0.00 2.69
301 302 3.120649 CGTCCGTGTTCAGATTCCTTTTC 60.121 47.826 0.00 0.00 0.00 2.29
302 303 2.806244 CGTCCGTGTTCAGATTCCTTTT 59.194 45.455 0.00 0.00 0.00 2.27
303 304 2.413837 CGTCCGTGTTCAGATTCCTTT 58.586 47.619 0.00 0.00 0.00 3.11
304 305 1.939838 GCGTCCGTGTTCAGATTCCTT 60.940 52.381 0.00 0.00 0.00 3.36
305 306 0.389948 GCGTCCGTGTTCAGATTCCT 60.390 55.000 0.00 0.00 0.00 3.36
306 307 0.669318 TGCGTCCGTGTTCAGATTCC 60.669 55.000 0.00 0.00 0.00 3.01
307 308 0.716108 CTGCGTCCGTGTTCAGATTC 59.284 55.000 0.00 0.00 0.00 2.52
308 309 0.317160 TCTGCGTCCGTGTTCAGATT 59.683 50.000 0.00 0.00 31.35 2.40
309 310 0.109086 CTCTGCGTCCGTGTTCAGAT 60.109 55.000 0.00 0.00 35.34 2.90
310 311 1.285950 CTCTGCGTCCGTGTTCAGA 59.714 57.895 0.00 0.00 34.74 3.27
311 312 0.597637 AACTCTGCGTCCGTGTTCAG 60.598 55.000 0.00 0.00 0.00 3.02
312 313 0.179094 AAACTCTGCGTCCGTGTTCA 60.179 50.000 0.00 0.00 0.00 3.18
313 314 0.507358 GAAACTCTGCGTCCGTGTTC 59.493 55.000 0.00 0.00 0.00 3.18
314 315 0.104304 AGAAACTCTGCGTCCGTGTT 59.896 50.000 0.00 0.00 0.00 3.32
315 316 0.597637 CAGAAACTCTGCGTCCGTGT 60.598 55.000 0.00 0.00 37.72 4.49
316 317 2.145225 CAGAAACTCTGCGTCCGTG 58.855 57.895 0.00 0.00 37.72 4.94
317 318 4.655527 CAGAAACTCTGCGTCCGT 57.344 55.556 0.00 0.00 37.72 4.69
324 325 0.320247 AGCTCGGTGCAGAAACTCTG 60.320 55.000 4.74 0.00 46.90 3.35
325 326 0.394565 AAGCTCGGTGCAGAAACTCT 59.605 50.000 4.74 0.00 45.94 3.24
326 327 0.514691 CAAGCTCGGTGCAGAAACTC 59.485 55.000 4.74 0.00 45.94 3.01
327 328 0.106708 TCAAGCTCGGTGCAGAAACT 59.893 50.000 4.74 0.00 45.94 2.66
328 329 0.944386 TTCAAGCTCGGTGCAGAAAC 59.056 50.000 4.74 0.00 45.94 2.78
329 330 0.944386 GTTCAAGCTCGGTGCAGAAA 59.056 50.000 4.74 0.00 45.94 2.52
330 331 0.179059 TGTTCAAGCTCGGTGCAGAA 60.179 50.000 4.74 5.50 45.94 3.02
331 332 0.601046 CTGTTCAAGCTCGGTGCAGA 60.601 55.000 4.74 0.00 45.94 4.26
332 333 0.882042 ACTGTTCAAGCTCGGTGCAG 60.882 55.000 4.74 0.00 45.94 4.41
333 334 0.391228 TACTGTTCAAGCTCGGTGCA 59.609 50.000 4.74 0.00 45.94 4.57
334 335 1.508632 TTACTGTTCAAGCTCGGTGC 58.491 50.000 0.00 0.00 43.29 5.01
335 336 4.213270 TGATTTTACTGTTCAAGCTCGGTG 59.787 41.667 0.00 0.00 0.00 4.94
336 337 4.385825 TGATTTTACTGTTCAAGCTCGGT 58.614 39.130 0.00 0.00 0.00 4.69
337 338 4.690748 TCTGATTTTACTGTTCAAGCTCGG 59.309 41.667 0.00 0.00 0.00 4.63
338 339 5.845985 TCTGATTTTACTGTTCAAGCTCG 57.154 39.130 0.00 0.00 0.00 5.03
339 340 7.426929 TCTTCTGATTTTACTGTTCAAGCTC 57.573 36.000 0.00 0.00 0.00 4.09
340 341 7.807977 TTCTTCTGATTTTACTGTTCAAGCT 57.192 32.000 0.00 0.00 0.00 3.74
341 342 8.856490 TTTTCTTCTGATTTTACTGTTCAAGC 57.144 30.769 0.00 0.00 0.00 4.01
385 386 9.575783 AGCACTTAAAACTTTTGTCGATAAAAA 57.424 25.926 18.82 13.26 0.00 1.94
386 387 9.575783 AAGCACTTAAAACTTTTGTCGATAAAA 57.424 25.926 17.57 17.57 0.00 1.52
387 388 9.015577 CAAGCACTTAAAACTTTTGTCGATAAA 57.984 29.630 2.90 2.90 0.00 1.40
388 389 7.166804 GCAAGCACTTAAAACTTTTGTCGATAA 59.833 33.333 0.00 0.00 0.00 1.75
389 390 6.635239 GCAAGCACTTAAAACTTTTGTCGATA 59.365 34.615 0.00 0.00 0.00 2.92
390 391 5.458779 GCAAGCACTTAAAACTTTTGTCGAT 59.541 36.000 0.00 0.00 0.00 3.59
391 392 4.796312 GCAAGCACTTAAAACTTTTGTCGA 59.204 37.500 0.00 0.00 0.00 4.20
392 393 4.316377 CGCAAGCACTTAAAACTTTTGTCG 60.316 41.667 0.00 0.00 0.00 4.35
393 394 4.796312 TCGCAAGCACTTAAAACTTTTGTC 59.204 37.500 0.00 0.00 37.18 3.18
394 395 4.739195 TCGCAAGCACTTAAAACTTTTGT 58.261 34.783 0.00 0.00 37.18 2.83
395 396 5.694674 TTCGCAAGCACTTAAAACTTTTG 57.305 34.783 0.00 0.00 37.18 2.44
396 397 6.713792 TTTTCGCAAGCACTTAAAACTTTT 57.286 29.167 0.00 0.00 37.18 2.27
397 398 6.902224 ATTTTCGCAAGCACTTAAAACTTT 57.098 29.167 0.00 0.00 37.18 2.66
398 399 6.291585 CGAATTTTCGCAAGCACTTAAAACTT 60.292 34.615 0.00 0.00 44.26 2.66
399 400 5.173131 CGAATTTTCGCAAGCACTTAAAACT 59.827 36.000 0.00 0.00 44.26 2.66
400 401 5.354692 CGAATTTTCGCAAGCACTTAAAAC 58.645 37.500 0.00 0.00 44.26 2.43
401 402 5.553692 CGAATTTTCGCAAGCACTTAAAA 57.446 34.783 0.00 0.00 44.26 1.52
415 416 7.756722 AGGAATGTGATTTCATGACGAATTTTC 59.243 33.333 0.00 0.00 32.32 2.29
416 417 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
417 418 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
418 419 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
419 420 7.864108 TTAGGAATGTGATTTCATGACGAAT 57.136 32.000 0.00 0.00 32.32 3.34
420 421 7.680442 TTTAGGAATGTGATTTCATGACGAA 57.320 32.000 0.00 0.00 0.00 3.85
421 422 7.606073 TCTTTTAGGAATGTGATTTCATGACGA 59.394 33.333 0.00 0.00 0.00 4.20
422 423 7.693951 GTCTTTTAGGAATGTGATTTCATGACG 59.306 37.037 0.00 0.00 0.00 4.35
423 424 7.693951 CGTCTTTTAGGAATGTGATTTCATGAC 59.306 37.037 0.00 0.00 0.00 3.06
424 425 7.390440 ACGTCTTTTAGGAATGTGATTTCATGA 59.610 33.333 0.00 0.00 0.00 3.07
425 426 7.482743 CACGTCTTTTAGGAATGTGATTTCATG 59.517 37.037 0.00 0.00 0.00 3.07
426 427 7.362056 CCACGTCTTTTAGGAATGTGATTTCAT 60.362 37.037 0.00 0.00 0.00 2.57
427 428 6.072728 CCACGTCTTTTAGGAATGTGATTTCA 60.073 38.462 0.00 0.00 0.00 2.69
428 429 6.148811 TCCACGTCTTTTAGGAATGTGATTTC 59.851 38.462 0.00 0.00 0.00 2.17
429 430 6.001460 TCCACGTCTTTTAGGAATGTGATTT 58.999 36.000 0.00 0.00 0.00 2.17
430 431 5.556915 TCCACGTCTTTTAGGAATGTGATT 58.443 37.500 0.00 0.00 0.00 2.57
431 432 5.160607 TCCACGTCTTTTAGGAATGTGAT 57.839 39.130 0.00 0.00 0.00 3.06
432 433 4.610605 TCCACGTCTTTTAGGAATGTGA 57.389 40.909 0.00 0.00 0.00 3.58
433 434 5.682943 TTTCCACGTCTTTTAGGAATGTG 57.317 39.130 3.87 0.00 39.67 3.21
434 435 6.702716 TTTTTCCACGTCTTTTAGGAATGT 57.297 33.333 3.87 0.00 39.67 2.71
456 457 8.220755 TGTAGCATTTTCAGAGTACTGTTTTT 57.779 30.769 0.00 0.00 43.81 1.94
457 458 7.801716 TGTAGCATTTTCAGAGTACTGTTTT 57.198 32.000 0.00 0.00 43.81 2.43
458 459 7.986085 ATGTAGCATTTTCAGAGTACTGTTT 57.014 32.000 0.00 0.00 43.81 2.83
459 460 7.661437 TGAATGTAGCATTTTCAGAGTACTGTT 59.339 33.333 0.00 0.00 43.81 3.16
460 461 7.161404 TGAATGTAGCATTTTCAGAGTACTGT 58.839 34.615 0.00 0.00 43.81 3.55
461 462 7.601073 TGAATGTAGCATTTTCAGAGTACTG 57.399 36.000 0.00 0.00 44.66 2.74
462 463 8.621532 TTTGAATGTAGCATTTTCAGAGTACT 57.378 30.769 0.00 0.00 31.54 2.73
463 464 9.334693 CTTTTGAATGTAGCATTTTCAGAGTAC 57.665 33.333 0.00 0.00 31.54 2.73
464 465 8.023128 GCTTTTGAATGTAGCATTTTCAGAGTA 58.977 33.333 0.00 0.00 35.05 2.59
465 466 6.865205 GCTTTTGAATGTAGCATTTTCAGAGT 59.135 34.615 0.00 0.00 35.05 3.24
466 467 6.033196 CGCTTTTGAATGTAGCATTTTCAGAG 59.967 38.462 0.00 0.00 34.62 3.35
467 468 5.858049 CGCTTTTGAATGTAGCATTTTCAGA 59.142 36.000 0.00 0.00 34.62 3.27
468 469 5.630680 ACGCTTTTGAATGTAGCATTTTCAG 59.369 36.000 0.00 0.00 34.62 3.02
469 470 5.527951 ACGCTTTTGAATGTAGCATTTTCA 58.472 33.333 0.00 0.00 34.62 2.69
470 471 6.452244 AACGCTTTTGAATGTAGCATTTTC 57.548 33.333 0.00 0.00 34.62 2.29
471 472 6.843069 AAACGCTTTTGAATGTAGCATTTT 57.157 29.167 0.00 0.00 34.62 1.82
472 473 6.843069 AAAACGCTTTTGAATGTAGCATTT 57.157 29.167 0.00 0.00 32.41 2.32
485 486 3.502191 TCAGTGCTTCAAAACGCTTTT 57.498 38.095 0.00 0.00 0.00 2.27
486 487 3.502191 TTCAGTGCTTCAAAACGCTTT 57.498 38.095 0.00 0.00 0.00 3.51
487 488 3.715628 ATTCAGTGCTTCAAAACGCTT 57.284 38.095 0.00 0.00 0.00 4.68
488 489 3.181487 ACAATTCAGTGCTTCAAAACGCT 60.181 39.130 0.00 0.00 0.00 5.07
489 490 3.115554 ACAATTCAGTGCTTCAAAACGC 58.884 40.909 0.00 0.00 0.00 4.84
490 491 5.701029 AAACAATTCAGTGCTTCAAAACG 57.299 34.783 0.00 0.00 0.00 3.60
520 521 4.034510 CACATTTTTAAGGCGTGGCAAAAA 59.965 37.500 0.00 6.79 35.15 1.94
521 522 3.557595 CACATTTTTAAGGCGTGGCAAAA 59.442 39.130 0.00 0.00 0.00 2.44
522 523 3.126831 CACATTTTTAAGGCGTGGCAAA 58.873 40.909 0.00 0.00 0.00 3.68
523 524 2.362397 TCACATTTTTAAGGCGTGGCAA 59.638 40.909 0.00 0.00 0.00 4.52
524 525 1.957177 TCACATTTTTAAGGCGTGGCA 59.043 42.857 0.00 0.00 0.00 4.92
525 526 2.715737 TCACATTTTTAAGGCGTGGC 57.284 45.000 0.00 0.00 0.00 5.01
526 527 4.173256 GGAATCACATTTTTAAGGCGTGG 58.827 43.478 0.00 0.00 0.00 4.94
527 528 4.621034 GTGGAATCACATTTTTAAGGCGTG 59.379 41.667 0.00 0.00 43.13 5.34
528 529 4.321675 GGTGGAATCACATTTTTAAGGCGT 60.322 41.667 0.00 0.00 45.32 5.68
529 530 4.173256 GGTGGAATCACATTTTTAAGGCG 58.827 43.478 0.00 0.00 45.32 5.52
530 531 4.929211 GTGGTGGAATCACATTTTTAAGGC 59.071 41.667 0.00 0.00 45.32 4.35
531 532 6.095432 TGTGGTGGAATCACATTTTTAAGG 57.905 37.500 0.00 0.00 45.32 2.69
532 533 8.606040 ATTTGTGGTGGAATCACATTTTTAAG 57.394 30.769 0.00 0.00 45.32 1.85
533 534 8.970859 AATTTGTGGTGGAATCACATTTTTAA 57.029 26.923 0.00 0.00 45.32 1.52
534 535 8.970859 AAATTTGTGGTGGAATCACATTTTTA 57.029 26.923 0.00 0.00 45.32 1.52
535 536 7.878547 AAATTTGTGGTGGAATCACATTTTT 57.121 28.000 0.00 0.00 45.32 1.94
536 537 7.878547 AAAATTTGTGGTGGAATCACATTTT 57.121 28.000 0.00 0.00 45.32 1.82
537 538 7.681543 GCAAAAATTTGTGGTGGAATCACATTT 60.682 33.333 10.38 0.00 43.53 2.32
538 539 6.238703 GCAAAAATTTGTGGTGGAATCACATT 60.239 34.615 10.38 0.00 43.53 2.71
539 540 5.239087 GCAAAAATTTGTGGTGGAATCACAT 59.761 36.000 10.38 0.00 43.53 3.21
540 541 4.574013 GCAAAAATTTGTGGTGGAATCACA 59.426 37.500 10.38 0.00 41.49 3.58
541 542 4.574013 TGCAAAAATTTGTGGTGGAATCAC 59.426 37.500 10.38 0.00 40.33 3.06
542 543 4.774124 TGCAAAAATTTGTGGTGGAATCA 58.226 34.783 10.38 0.00 40.24 2.57
543 544 5.747951 TTGCAAAAATTTGTGGTGGAATC 57.252 34.783 10.38 0.00 40.24 2.52
544 545 4.036616 GCTTGCAAAAATTTGTGGTGGAAT 59.963 37.500 10.38 0.00 40.24 3.01
545 546 3.376546 GCTTGCAAAAATTTGTGGTGGAA 59.623 39.130 10.38 4.77 40.24 3.53
546 547 2.941720 GCTTGCAAAAATTTGTGGTGGA 59.058 40.909 10.38 0.00 40.24 4.02
547 548 2.681848 TGCTTGCAAAAATTTGTGGTGG 59.318 40.909 10.38 0.00 40.24 4.61
548 549 3.374678 AGTGCTTGCAAAAATTTGTGGTG 59.625 39.130 10.38 0.00 40.24 4.17
549 550 3.608796 AGTGCTTGCAAAAATTTGTGGT 58.391 36.364 10.38 0.00 40.24 4.16
550 551 4.619437 AAGTGCTTGCAAAAATTTGTGG 57.381 36.364 10.38 0.00 40.24 4.17
551 552 6.586868 TCTAAGTGCTTGCAAAAATTTGTG 57.413 33.333 3.80 3.80 40.24 3.33
552 553 6.818142 AGTTCTAAGTGCTTGCAAAAATTTGT 59.182 30.769 0.00 0.00 40.24 2.83
553 554 7.237920 AGTTCTAAGTGCTTGCAAAAATTTG 57.762 32.000 0.00 1.52 41.03 2.32
554 555 7.848223 AAGTTCTAAGTGCTTGCAAAAATTT 57.152 28.000 0.00 0.00 0.00 1.82
555 556 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
556 557 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
557 558 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
558 559 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
559 560 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
560 561 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
561 562 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
562 563 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
563 564 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
564 565 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
565 566 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
566 567 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
567 568 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
568 569 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
569 570 7.862873 GGGAGAAACATTGACAAAAGTTCTAAG 59.137 37.037 9.09 0.00 0.00 2.18
570 571 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
571 572 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
572 573 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
573 574 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
574 575 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
575 576 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
576 577 7.237920 CTTTTGGGAGAAACATTGACAAAAG 57.762 36.000 11.12 11.12 43.47 2.27
577 578 6.940739 TCTTTTGGGAGAAACATTGACAAAA 58.059 32.000 0.00 0.00 35.72 2.44
578 579 6.537453 TCTTTTGGGAGAAACATTGACAAA 57.463 33.333 0.00 0.00 0.00 2.83
579 580 6.537453 TTCTTTTGGGAGAAACATTGACAA 57.463 33.333 0.00 0.00 32.95 3.18
580 581 6.537453 TTTCTTTTGGGAGAAACATTGACA 57.463 33.333 0.00 0.00 39.90 3.58
581 582 7.041848 CCAATTTCTTTTGGGAGAAACATTGAC 60.042 37.037 12.03 0.00 45.46 3.18
582 583 6.991531 CCAATTTCTTTTGGGAGAAACATTGA 59.008 34.615 12.03 0.00 45.46 2.57
583 584 6.991531 TCCAATTTCTTTTGGGAGAAACATTG 59.008 34.615 2.51 4.98 45.46 2.82
584 585 7.135591 TCCAATTTCTTTTGGGAGAAACATT 57.864 32.000 2.51 0.00 45.46 2.71
585 586 6.745794 TCCAATTTCTTTTGGGAGAAACAT 57.254 33.333 2.51 0.00 45.46 2.71
586 587 6.745794 ATCCAATTTCTTTTGGGAGAAACA 57.254 33.333 2.51 0.00 45.46 2.83
587 588 8.450578 AAAATCCAATTTCTTTTGGGAGAAAC 57.549 30.769 2.51 0.00 45.46 2.78
588 589 9.119418 GAAAAATCCAATTTCTTTTGGGAGAAA 57.881 29.630 3.56 2.91 46.36 2.52
589 590 8.493607 AGAAAAATCCAATTTCTTTTGGGAGAA 58.506 29.630 3.56 0.00 42.85 2.87
590 591 7.933033 CAGAAAAATCCAATTTCTTTTGGGAGA 59.067 33.333 3.56 0.00 42.85 3.71
591 592 7.933033 TCAGAAAAATCCAATTTCTTTTGGGAG 59.067 33.333 3.56 0.00 42.85 4.30
592 593 7.800092 TCAGAAAAATCCAATTTCTTTTGGGA 58.200 30.769 3.56 0.00 42.85 4.37
593 594 8.449251 TTCAGAAAAATCCAATTTCTTTTGGG 57.551 30.769 3.56 0.00 42.85 4.12
601 602 9.934190 CGAAATGTTTTCAGAAAAATCCAATTT 57.066 25.926 10.00 10.60 36.77 1.82
602 603 9.323985 TCGAAATGTTTTCAGAAAAATCCAATT 57.676 25.926 10.00 4.20 36.77 2.32
603 604 8.885494 TCGAAATGTTTTCAGAAAAATCCAAT 57.115 26.923 10.00 0.00 36.77 3.16
604 605 7.042791 GCTCGAAATGTTTTCAGAAAAATCCAA 60.043 33.333 10.00 0.00 36.77 3.53
605 606 6.420604 GCTCGAAATGTTTTCAGAAAAATCCA 59.579 34.615 10.00 5.04 36.77 3.41
606 607 6.420604 TGCTCGAAATGTTTTCAGAAAAATCC 59.579 34.615 10.00 0.00 36.77 3.01
607 608 7.379529 TCTGCTCGAAATGTTTTCAGAAAAATC 59.620 33.333 10.00 6.04 36.77 2.17
608 609 7.202526 TCTGCTCGAAATGTTTTCAGAAAAAT 58.797 30.769 10.00 4.16 36.77 1.82
609 610 6.559810 TCTGCTCGAAATGTTTTCAGAAAAA 58.440 32.000 10.00 2.05 31.13 1.94
610 611 6.130298 TCTGCTCGAAATGTTTTCAGAAAA 57.870 33.333 4.06 4.06 0.00 2.29
611 612 5.749596 TCTGCTCGAAATGTTTTCAGAAA 57.250 34.783 0.00 0.00 0.00 2.52
612 613 5.749596 TTCTGCTCGAAATGTTTTCAGAA 57.250 34.783 0.00 0.00 36.93 3.02
613 614 5.749596 TTTCTGCTCGAAATGTTTTCAGA 57.250 34.783 1.40 0.00 36.72 3.27
645 646 3.335786 TCGAATAGCTAGCGTTCAGAC 57.664 47.619 25.34 9.99 0.00 3.51
651 652 2.128035 GTGCAATCGAATAGCTAGCGT 58.872 47.619 9.55 0.00 0.00 5.07
681 682 1.372087 GGGAGAAAGGCGCTGTCATG 61.372 60.000 7.64 0.00 0.00 3.07
756 757 0.613012 GGCTTGGAGGGAATTGTGCT 60.613 55.000 0.00 0.00 0.00 4.40
796 797 1.956477 GTTGCAAACTGAGTCCCACAT 59.044 47.619 0.00 0.00 45.32 3.21
1104 1105 2.626780 GCGTGGCAAGGGAAGGTTC 61.627 63.158 1.91 0.00 0.00 3.62
1198 1199 2.032528 CTGCTCCGTGGAAAGCCA 59.967 61.111 0.00 0.00 43.47 4.75
1254 1255 1.449070 GTGGTCGAATTCCCCGGTC 60.449 63.158 0.00 0.00 0.00 4.79
1320 1321 3.449227 TCGTCCTGCGGCCAGTAG 61.449 66.667 2.24 4.55 41.72 2.57
1468 1469 8.013378 GCAACATTTTGATTGAAATTTCTGGAG 58.987 33.333 18.64 5.04 34.24 3.86
1471 1472 7.528182 GTCGCAACATTTTGATTGAAATTTCTG 59.472 33.333 18.64 8.65 34.24 3.02
1501 1560 5.297314 CGCTTCAAAATTTAAATCACGTGC 58.703 37.500 11.67 2.29 0.00 5.34
1505 1570 4.720946 GCGCCGCTTCAAAATTTAAATCAC 60.721 41.667 0.00 0.00 0.00 3.06
2337 2428 1.561542 GGTGTTGATGGAGACCTGGAT 59.438 52.381 0.00 0.00 30.65 3.41
2357 2448 1.871039 ACTTGTGAAACGGAATGGTCG 59.129 47.619 0.00 0.00 42.39 4.79
2373 2464 2.327568 CCTGCGCACCAAAATTACTTG 58.672 47.619 5.66 0.00 0.00 3.16
2375 2466 0.243636 GCCTGCGCACCAAAATTACT 59.756 50.000 5.66 0.00 34.03 2.24
2376 2467 0.038709 TGCCTGCGCACCAAAATTAC 60.039 50.000 5.66 0.00 41.12 1.89
2425 2573 5.529060 GTGGGTTCTTGATCATCACCTAATC 59.471 44.000 14.84 3.37 0.00 1.75
2617 2771 0.413037 ATGAAGGGCCCATTGGACAA 59.587 50.000 27.56 0.00 44.10 3.18
2625 2779 1.304381 GTTGAGCATGAAGGGCCCA 60.304 57.895 27.56 2.74 0.00 5.36
2784 2938 3.460103 GAAGAAGACGGTGTTGTGGTTA 58.540 45.455 0.00 0.00 0.00 2.85
3648 3856 1.472662 CGGACCACTTCACCTCCAGT 61.473 60.000 0.00 0.00 0.00 4.00
3672 3880 2.608988 CACCACTCCTCCAGCCCT 60.609 66.667 0.00 0.00 0.00 5.19
4165 4379 2.359214 TCGATCGATTTCCTGACCAGAG 59.641 50.000 15.15 0.00 0.00 3.35
4166 4380 2.359214 CTCGATCGATTTCCTGACCAGA 59.641 50.000 19.78 0.00 0.00 3.86
4167 4381 2.736978 CTCGATCGATTTCCTGACCAG 58.263 52.381 19.78 0.00 0.00 4.00
4212 4444 2.690778 GCTGATGGCGCGGTTCTTT 61.691 57.895 8.83 0.00 0.00 2.52
4248 4487 1.578206 GGCGGTTCTCCAAGCTGTTC 61.578 60.000 0.00 0.00 0.00 3.18
4264 4510 1.987770 GAAGACAAACAATGCATGGCG 59.012 47.619 0.00 0.00 0.00 5.69
4390 4642 2.029020 GCCATGATATCAGTGCGTAGGA 60.029 50.000 11.78 0.00 0.00 2.94
4391 4643 2.289010 TGCCATGATATCAGTGCGTAGG 60.289 50.000 18.88 10.17 0.00 3.18
4392 4644 3.030668 TGCCATGATATCAGTGCGTAG 57.969 47.619 18.88 5.38 0.00 3.51
4393 4645 3.130633 GTTGCCATGATATCAGTGCGTA 58.869 45.455 18.88 10.45 0.00 4.42
4413 4665 5.188555 CCTGAGGAGTATATGTATGCCATGT 59.811 44.000 0.00 0.00 34.86 3.21
4414 4666 5.668471 CCTGAGGAGTATATGTATGCCATG 58.332 45.833 0.00 0.00 34.86 3.66
4415 4667 4.163078 GCCTGAGGAGTATATGTATGCCAT 59.837 45.833 0.65 0.00 37.58 4.40
4416 4668 3.515502 GCCTGAGGAGTATATGTATGCCA 59.484 47.826 0.65 0.00 0.00 4.92
4417 4669 3.772025 AGCCTGAGGAGTATATGTATGCC 59.228 47.826 0.65 0.00 0.00 4.40
4418 4670 4.142049 GGAGCCTGAGGAGTATATGTATGC 60.142 50.000 0.65 0.00 0.00 3.14
4419 4671 5.268387 AGGAGCCTGAGGAGTATATGTATG 58.732 45.833 0.65 0.00 0.00 2.39
4420 4672 5.544441 AGGAGCCTGAGGAGTATATGTAT 57.456 43.478 0.65 0.00 0.00 2.29
4421 4673 6.464530 TTAGGAGCCTGAGGAGTATATGTA 57.535 41.667 0.65 0.00 0.00 2.29
4422 4674 3.913370 AGGAGCCTGAGGAGTATATGT 57.087 47.619 0.65 0.00 0.00 2.29
4423 4675 5.337169 GCTTTAGGAGCCTGAGGAGTATATG 60.337 48.000 0.65 0.00 46.01 1.78
4424 4676 4.775253 GCTTTAGGAGCCTGAGGAGTATAT 59.225 45.833 0.65 0.00 46.01 0.86
4425 4677 4.153411 GCTTTAGGAGCCTGAGGAGTATA 58.847 47.826 0.65 0.00 46.01 1.47
4460 4712 9.793259 TCAGAATTTCTGTACAATTAACCTTCT 57.207 29.630 22.44 1.45 44.58 2.85
4511 8135 7.265673 ACATAATACGGGAGCATATATGTGAC 58.734 38.462 14.14 6.10 0.00 3.67
4645 8276 4.858692 CGTTGAAAATGCCCTAATCAAGTG 59.141 41.667 0.00 0.00 31.24 3.16
4663 8294 1.070105 CGGTTTGAGGGTCCGTTGA 59.930 57.895 0.00 0.00 39.51 3.18
4671 8302 3.690685 TATGCGGGCGGTTTGAGGG 62.691 63.158 0.00 0.00 0.00 4.30
4672 8303 2.124901 TATGCGGGCGGTTTGAGG 60.125 61.111 0.00 0.00 0.00 3.86
4674 8305 2.816083 CGTATGCGGGCGGTTTGA 60.816 61.111 0.00 0.00 0.00 2.69
4676 8307 2.816520 GACGTATGCGGGCGGTTT 60.817 61.111 8.39 0.00 43.45 3.27
4677 8308 4.825252 GGACGTATGCGGGCGGTT 62.825 66.667 8.39 0.00 43.45 4.44
4691 8322 2.158959 CAGACAACGCGATCCGGAC 61.159 63.158 15.93 0.00 42.52 4.79
4693 8324 2.629050 ATCCAGACAACGCGATCCGG 62.629 60.000 15.93 9.41 42.52 5.14
4736 8367 2.519377 CCGCTCGGTGGACAATATAA 57.481 50.000 0.00 0.00 34.74 0.98
4748 8379 0.600255 AAGTGAACTGAACCGCTCGG 60.600 55.000 6.79 6.79 42.03 4.63
5122 8753 2.861462 TTTGCTCCGGTTGTCTTTTG 57.139 45.000 0.00 0.00 0.00 2.44
5123 8754 4.400529 AAATTTGCTCCGGTTGTCTTTT 57.599 36.364 0.00 0.00 0.00 2.27
5124 8755 4.119136 CAAAATTTGCTCCGGTTGTCTTT 58.881 39.130 0.00 0.00 0.00 2.52
5125 8756 3.132111 ACAAAATTTGCTCCGGTTGTCTT 59.868 39.130 5.52 0.00 0.00 3.01
5126 8757 2.693074 ACAAAATTTGCTCCGGTTGTCT 59.307 40.909 5.52 0.00 0.00 3.41
5127 8758 2.794350 CACAAAATTTGCTCCGGTTGTC 59.206 45.455 5.52 0.00 0.00 3.18
5128 8759 2.482839 CCACAAAATTTGCTCCGGTTGT 60.483 45.455 5.52 0.00 0.00 3.32
5129 8760 2.134346 CCACAAAATTTGCTCCGGTTG 58.866 47.619 5.52 0.00 0.00 3.77
5130 8761 1.069978 CCCACAAAATTTGCTCCGGTT 59.930 47.619 5.52 0.00 0.00 4.44
5131 8762 0.678950 CCCACAAAATTTGCTCCGGT 59.321 50.000 5.52 0.00 0.00 5.28
5132 8763 0.678950 ACCCACAAAATTTGCTCCGG 59.321 50.000 5.52 0.00 0.00 5.14
5133 8764 1.339610 TGACCCACAAAATTTGCTCCG 59.660 47.619 5.52 0.00 0.00 4.63
5134 8765 2.365293 ACTGACCCACAAAATTTGCTCC 59.635 45.455 5.52 0.00 0.00 4.70
5135 8766 3.181476 ACACTGACCCACAAAATTTGCTC 60.181 43.478 5.52 0.00 0.00 4.26
5136 8767 2.765699 ACACTGACCCACAAAATTTGCT 59.234 40.909 5.52 0.00 0.00 3.91
5137 8768 3.177997 ACACTGACCCACAAAATTTGC 57.822 42.857 5.52 0.00 0.00 3.68
5138 8769 4.753233 TCAACACTGACCCACAAAATTTG 58.247 39.130 3.89 3.89 0.00 2.32
5139 8770 5.413309 TTCAACACTGACCCACAAAATTT 57.587 34.783 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.