Multiple sequence alignment - TraesCS7D01G339600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G339600 chr7D 100.000 3050 0 0 1 3050 433874900 433877949 0.000000e+00 5633.0
1 TraesCS7D01G339600 chr7D 82.301 678 96 14 14 669 232473430 232474105 1.590000e-157 566.0
2 TraesCS7D01G339600 chr7D 86.076 316 29 7 2491 2797 58896903 58897212 2.930000e-85 326.0
3 TraesCS7D01G339600 chr7D 78.125 192 30 7 673 857 611867593 611867779 8.940000e-21 111.0
4 TraesCS7D01G339600 chr7B 94.560 1544 51 18 882 2419 451289148 451290664 0.000000e+00 2355.0
5 TraesCS7D01G339600 chr7A 92.020 1391 73 21 886 2251 484524503 484525880 0.000000e+00 1919.0
6 TraesCS7D01G339600 chr7A 86.851 578 57 9 2487 3046 602236767 602237343 2.000000e-176 628.0
7 TraesCS7D01G339600 chr7A 83.136 676 89 14 15 669 93030585 93029914 7.280000e-166 593.0
8 TraesCS7D01G339600 chr3D 93.803 468 28 1 2583 3050 424649665 424650131 0.000000e+00 702.0
9 TraesCS7D01G339600 chr3D 88.571 560 40 9 2490 3039 56283841 56283296 0.000000e+00 658.0
10 TraesCS7D01G339600 chr3D 88.571 560 39 11 2490 3039 56297782 56297238 0.000000e+00 656.0
11 TraesCS7D01G339600 chr3D 82.422 677 98 14 14 669 267285092 267285768 3.410000e-159 571.0
12 TraesCS7D01G339600 chr3D 80.945 677 101 14 14 669 528090951 528090282 7.540000e-141 510.0
13 TraesCS7D01G339600 chr3D 80.506 672 110 10 15 665 583387137 583387808 2.110000e-136 496.0
14 TraesCS7D01G339600 chr3D 80.916 262 48 2 1686 1946 612272827 612272567 3.990000e-49 206.0
15 TraesCS7D01G339600 chr5D 89.062 576 42 12 2492 3050 404490779 404491350 0.000000e+00 695.0
16 TraesCS7D01G339600 chr5D 87.392 579 54 11 2486 3050 404104687 404104114 0.000000e+00 647.0
17 TraesCS7D01G339600 chr5D 82.127 677 97 11 15 669 37605314 37604640 2.660000e-155 558.0
18 TraesCS7D01G339600 chr6D 88.368 576 52 8 2487 3048 412488649 412489223 0.000000e+00 678.0
19 TraesCS7D01G339600 chr6D 92.026 464 32 2 2587 3050 431071714 431072172 0.000000e+00 647.0
20 TraesCS7D01G339600 chr6D 79.622 687 112 14 5 669 356769029 356768349 4.600000e-128 468.0
21 TraesCS7D01G339600 chr6D 86.071 280 37 2 1668 1946 325756278 325756556 1.780000e-77 300.0
22 TraesCS7D01G339600 chr3A 86.482 577 54 14 2490 3048 59956202 59956772 2.010000e-171 612.0
23 TraesCS7D01G339600 chr3A 81.737 668 101 14 23 669 277490334 277489667 3.460000e-149 538.0
24 TraesCS7D01G339600 chr3A 79.252 294 59 2 1654 1946 746917857 746917565 1.430000e-48 204.0
25 TraesCS7D01G339600 chrUn 83.068 691 91 17 1 669 49502339 49501653 3.360000e-169 604.0
26 TraesCS7D01G339600 chr1D 84.524 588 71 7 49 617 493958370 493957784 5.710000e-157 564.0
27 TraesCS7D01G339600 chr1D 85.102 443 62 4 229 668 365879587 365879146 1.670000e-122 449.0
28 TraesCS7D01G339600 chr1D 77.368 190 34 8 673 857 282178881 282178696 1.500000e-18 104.0
29 TraesCS7D01G339600 chr1D 78.528 163 24 7 673 828 4978079 4978237 2.500000e-16 97.1
30 TraesCS7D01G339600 chr2A 83.305 593 79 7 2 574 49760794 49761386 2.080000e-146 529.0
31 TraesCS7D01G339600 chr2A 85.870 276 39 0 1671 1946 671282827 671283102 8.270000e-76 294.0
32 TraesCS7D01G339600 chr5A 81.975 638 89 12 43 657 77320822 77320188 4.510000e-143 518.0
33 TraesCS7D01G339600 chr5A 78.756 193 32 6 672 857 455997230 455997040 1.490000e-23 121.0
34 TraesCS7D01G339600 chr1B 80.854 679 104 13 14 669 681836637 681835962 7.540000e-141 510.0
35 TraesCS7D01G339600 chr1B 84.444 180 20 4 673 846 162141986 162142163 1.450000e-38 171.0
36 TraesCS7D01G339600 chr1A 82.450 604 84 8 48 630 540691943 540692545 2.710000e-140 508.0
37 TraesCS7D01G339600 chr6B 82.222 585 82 10 15 577 274559016 274558432 4.570000e-133 484.0
38 TraesCS7D01G339600 chr6B 76.650 197 34 8 673 860 719234624 719234431 6.960000e-17 99.0
39 TraesCS7D01G339600 chr6A 82.253 586 71 13 15 577 195134522 195135097 2.750000e-130 475.0
40 TraesCS7D01G339600 chr6A 86.380 279 38 0 1668 1946 464538521 464538799 3.820000e-79 305.0
41 TraesCS7D01G339600 chr2D 80.652 491 74 10 14 485 632463508 632463996 8.040000e-96 361.0
42 TraesCS7D01G339600 chr2D 85.870 276 39 0 1671 1946 526345850 526346125 8.270000e-76 294.0
43 TraesCS7D01G339600 chr2B 85.507 276 40 0 1671 1946 622657641 622657916 3.850000e-74 289.0
44 TraesCS7D01G339600 chr4D 84.932 146 16 2 673 812 339474317 339474172 3.170000e-30 143.0
45 TraesCS7D01G339600 chr3B 80.952 168 25 3 672 833 698127603 698127437 3.190000e-25 126.0
46 TraesCS7D01G339600 chr5B 80.000 160 23 5 673 823 608646566 608646407 3.220000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G339600 chr7D 433874900 433877949 3049 False 5633 5633 100.000 1 3050 1 chr7D.!!$F3 3049
1 TraesCS7D01G339600 chr7D 232473430 232474105 675 False 566 566 82.301 14 669 1 chr7D.!!$F2 655
2 TraesCS7D01G339600 chr7B 451289148 451290664 1516 False 2355 2355 94.560 882 2419 1 chr7B.!!$F1 1537
3 TraesCS7D01G339600 chr7A 484524503 484525880 1377 False 1919 1919 92.020 886 2251 1 chr7A.!!$F1 1365
4 TraesCS7D01G339600 chr7A 602236767 602237343 576 False 628 628 86.851 2487 3046 1 chr7A.!!$F2 559
5 TraesCS7D01G339600 chr7A 93029914 93030585 671 True 593 593 83.136 15 669 1 chr7A.!!$R1 654
6 TraesCS7D01G339600 chr3D 56283296 56283841 545 True 658 658 88.571 2490 3039 1 chr3D.!!$R1 549
7 TraesCS7D01G339600 chr3D 56297238 56297782 544 True 656 656 88.571 2490 3039 1 chr3D.!!$R2 549
8 TraesCS7D01G339600 chr3D 267285092 267285768 676 False 571 571 82.422 14 669 1 chr3D.!!$F1 655
9 TraesCS7D01G339600 chr3D 528090282 528090951 669 True 510 510 80.945 14 669 1 chr3D.!!$R3 655
10 TraesCS7D01G339600 chr3D 583387137 583387808 671 False 496 496 80.506 15 665 1 chr3D.!!$F3 650
11 TraesCS7D01G339600 chr5D 404490779 404491350 571 False 695 695 89.062 2492 3050 1 chr5D.!!$F1 558
12 TraesCS7D01G339600 chr5D 404104114 404104687 573 True 647 647 87.392 2486 3050 1 chr5D.!!$R2 564
13 TraesCS7D01G339600 chr5D 37604640 37605314 674 True 558 558 82.127 15 669 1 chr5D.!!$R1 654
14 TraesCS7D01G339600 chr6D 412488649 412489223 574 False 678 678 88.368 2487 3048 1 chr6D.!!$F2 561
15 TraesCS7D01G339600 chr6D 356768349 356769029 680 True 468 468 79.622 5 669 1 chr6D.!!$R1 664
16 TraesCS7D01G339600 chr3A 59956202 59956772 570 False 612 612 86.482 2490 3048 1 chr3A.!!$F1 558
17 TraesCS7D01G339600 chr3A 277489667 277490334 667 True 538 538 81.737 23 669 1 chr3A.!!$R1 646
18 TraesCS7D01G339600 chrUn 49501653 49502339 686 True 604 604 83.068 1 669 1 chrUn.!!$R1 668
19 TraesCS7D01G339600 chr1D 493957784 493958370 586 True 564 564 84.524 49 617 1 chr1D.!!$R3 568
20 TraesCS7D01G339600 chr2A 49760794 49761386 592 False 529 529 83.305 2 574 1 chr2A.!!$F1 572
21 TraesCS7D01G339600 chr5A 77320188 77320822 634 True 518 518 81.975 43 657 1 chr5A.!!$R1 614
22 TraesCS7D01G339600 chr1B 681835962 681836637 675 True 510 510 80.854 14 669 1 chr1B.!!$R1 655
23 TraesCS7D01G339600 chr1A 540691943 540692545 602 False 508 508 82.450 48 630 1 chr1A.!!$F1 582
24 TraesCS7D01G339600 chr6B 274558432 274559016 584 True 484 484 82.222 15 577 1 chr6B.!!$R1 562
25 TraesCS7D01G339600 chr6A 195134522 195135097 575 False 475 475 82.253 15 577 1 chr6A.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 160 0.108138 ATGATATTCGGCGGCCTAGC 60.108 55.0 18.34 6.26 0.0 3.42 F
822 849 0.178987 TACTCTGCCGGATCCTCCTC 60.179 60.0 5.05 0.00 33.3 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2049 0.105964 CCGAAGGCATTATGGACCGA 59.894 55.0 0.00 0.0 46.14 4.69 R
2487 2540 0.108472 CGCTGTTGGAGATGCTCTCA 60.108 55.0 13.06 0.0 45.12 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 117 7.095017 GGAAGAAGATGACGAAGACTTTGAAAT 60.095 37.037 9.54 2.38 0.00 2.17
123 125 7.535139 TGACGAAGACTTTGAAATTGTTCTTT 58.465 30.769 9.54 0.00 34.60 2.52
158 160 0.108138 ATGATATTCGGCGGCCTAGC 60.108 55.000 18.34 6.26 0.00 3.42
318 342 7.571244 GCAAAAGTCGTTGAGAAGTATGATGAA 60.571 37.037 0.00 0.00 0.00 2.57
328 352 9.739276 TTGAGAAGTATGATGAATGGTTTAAGT 57.261 29.630 0.00 0.00 0.00 2.24
406 432 3.625764 GGCTGTTCGAGTTTTGGCATATA 59.374 43.478 0.00 0.00 0.00 0.86
415 441 4.672899 AGTTTTGGCATATAGGTGTTGGT 58.327 39.130 0.00 0.00 0.00 3.67
449 475 2.899976 TGACTATGTACGCATTGGTGG 58.100 47.619 0.00 0.00 36.58 4.61
450 476 1.597663 GACTATGTACGCATTGGTGGC 59.402 52.381 0.00 0.00 36.58 5.01
451 477 0.944386 CTATGTACGCATTGGTGGCC 59.056 55.000 0.00 0.00 36.58 5.36
523 549 0.406750 TGGACCGGAGTACTTGAGGA 59.593 55.000 9.46 0.00 0.00 3.71
542 568 2.434702 GGACACCCAACGAGGAAGATAT 59.565 50.000 0.00 0.00 41.22 1.63
543 569 3.458189 GACACCCAACGAGGAAGATATG 58.542 50.000 0.00 0.00 41.22 1.78
594 620 0.466922 GATGGTCAGGGATGCTTGGG 60.467 60.000 0.00 0.00 0.00 4.12
617 643 3.261643 TCACTTGACTGTATGCACTGGAT 59.738 43.478 0.00 0.00 0.00 3.41
646 673 3.507162 TTGTTCTGCAGGATGAAAGGA 57.493 42.857 15.13 0.00 39.69 3.36
658 685 6.409704 CAGGATGAAAGGATCAGTACAAAGA 58.590 40.000 0.00 0.00 42.53 2.52
659 686 7.052873 CAGGATGAAAGGATCAGTACAAAGAT 58.947 38.462 0.00 0.00 42.53 2.40
669 696 4.960938 TCAGTACAAAGATCACTGCAACT 58.039 39.130 5.47 2.35 39.60 3.16
670 697 6.096673 TCAGTACAAAGATCACTGCAACTA 57.903 37.500 5.47 0.00 39.60 2.24
671 698 5.926542 TCAGTACAAAGATCACTGCAACTAC 59.073 40.000 5.47 0.00 39.60 2.73
672 699 5.696270 CAGTACAAAGATCACTGCAACTACA 59.304 40.000 0.00 0.00 33.86 2.74
673 700 6.369890 CAGTACAAAGATCACTGCAACTACAT 59.630 38.462 0.00 0.00 33.86 2.29
674 701 7.545615 CAGTACAAAGATCACTGCAACTACATA 59.454 37.037 0.00 0.00 33.86 2.29
675 702 8.260818 AGTACAAAGATCACTGCAACTACATAT 58.739 33.333 0.00 0.00 0.00 1.78
676 703 7.312657 ACAAAGATCACTGCAACTACATATG 57.687 36.000 0.00 0.00 0.00 1.78
677 704 6.881065 ACAAAGATCACTGCAACTACATATGT 59.119 34.615 13.93 13.93 0.00 2.29
678 705 6.915544 AAGATCACTGCAACTACATATGTG 57.084 37.500 18.81 10.62 0.00 3.21
679 706 5.982356 AGATCACTGCAACTACATATGTGT 58.018 37.500 18.81 11.24 42.39 3.72
680 707 5.814188 AGATCACTGCAACTACATATGTGTG 59.186 40.000 18.81 14.78 39.39 3.82
681 708 3.684305 TCACTGCAACTACATATGTGTGC 59.316 43.478 23.59 23.59 39.39 4.57
682 709 3.686241 CACTGCAACTACATATGTGTGCT 59.314 43.478 27.23 14.79 39.39 4.40
683 710 4.869861 CACTGCAACTACATATGTGTGCTA 59.130 41.667 27.23 18.35 39.39 3.49
684 711 5.351189 CACTGCAACTACATATGTGTGCTAA 59.649 40.000 27.23 15.70 39.39 3.09
685 712 6.037500 CACTGCAACTACATATGTGTGCTAAT 59.962 38.462 27.23 16.87 39.39 1.73
686 713 7.224557 CACTGCAACTACATATGTGTGCTAATA 59.775 37.037 27.23 14.99 39.39 0.98
687 714 7.933577 ACTGCAACTACATATGTGTGCTAATAT 59.066 33.333 27.23 14.16 39.39 1.28
688 715 8.086851 TGCAACTACATATGTGTGCTAATATG 57.913 34.615 27.23 15.15 40.88 1.78
689 716 7.714813 TGCAACTACATATGTGTGCTAATATGT 59.285 33.333 27.23 11.73 46.57 2.29
690 717 9.203421 GCAACTACATATGTGTGCTAATATGTA 57.797 33.333 23.29 12.51 44.37 2.29
695 722 8.087982 ACATATGTGTGCTAATATGTAGTTGC 57.912 34.615 7.78 0.00 44.37 4.17
696 723 7.714813 ACATATGTGTGCTAATATGTAGTTGCA 59.285 33.333 7.78 0.00 44.37 4.08
697 724 8.558700 CATATGTGTGCTAATATGTAGTTGCAA 58.441 33.333 0.00 0.00 33.78 4.08
698 725 7.572523 ATGTGTGCTAATATGTAGTTGCAAT 57.427 32.000 0.59 0.00 32.10 3.56
699 726 6.784176 TGTGTGCTAATATGTAGTTGCAATG 58.216 36.000 0.59 0.00 32.10 2.82
700 727 6.374053 TGTGTGCTAATATGTAGTTGCAATGT 59.626 34.615 0.59 0.00 32.10 2.71
701 728 6.688385 GTGTGCTAATATGTAGTTGCAATGTG 59.312 38.462 0.59 0.00 32.10 3.21
702 729 6.597280 TGTGCTAATATGTAGTTGCAATGTGA 59.403 34.615 0.59 0.00 32.10 3.58
703 730 7.120432 TGTGCTAATATGTAGTTGCAATGTGAA 59.880 33.333 0.59 0.00 32.10 3.18
704 731 7.429340 GTGCTAATATGTAGTTGCAATGTGAAC 59.571 37.037 0.59 0.00 32.10 3.18
705 732 7.336679 TGCTAATATGTAGTTGCAATGTGAACT 59.663 33.333 0.59 0.00 36.40 3.01
706 733 8.826710 GCTAATATGTAGTTGCAATGTGAACTA 58.173 33.333 0.59 0.00 34.28 2.24
709 736 9.448438 AATATGTAGTTGCAATGTGAACTAGAA 57.552 29.630 0.59 0.00 35.76 2.10
710 737 7.928307 ATGTAGTTGCAATGTGAACTAGAAT 57.072 32.000 0.59 0.00 35.76 2.40
711 738 7.744087 TGTAGTTGCAATGTGAACTAGAATT 57.256 32.000 0.59 0.00 35.76 2.17
712 739 8.165239 TGTAGTTGCAATGTGAACTAGAATTT 57.835 30.769 0.59 0.00 35.76 1.82
713 740 8.289618 TGTAGTTGCAATGTGAACTAGAATTTC 58.710 33.333 0.59 0.00 35.76 2.17
714 741 6.681777 AGTTGCAATGTGAACTAGAATTTCC 58.318 36.000 0.59 0.00 30.47 3.13
715 742 6.491403 AGTTGCAATGTGAACTAGAATTTCCT 59.509 34.615 0.59 0.00 30.47 3.36
716 743 7.665559 AGTTGCAATGTGAACTAGAATTTCCTA 59.334 33.333 0.59 0.00 30.47 2.94
717 744 7.994425 TGCAATGTGAACTAGAATTTCCTAA 57.006 32.000 0.00 0.00 0.00 2.69
718 745 8.044060 TGCAATGTGAACTAGAATTTCCTAAG 57.956 34.615 0.00 0.00 0.00 2.18
719 746 7.665559 TGCAATGTGAACTAGAATTTCCTAAGT 59.334 33.333 0.00 0.00 0.00 2.24
720 747 8.515414 GCAATGTGAACTAGAATTTCCTAAGTT 58.485 33.333 0.00 8.38 0.00 2.66
742 769 9.917129 AAGTTAGAAAAACAAAATTATACCCCG 57.083 29.630 0.00 0.00 0.00 5.73
743 770 9.081204 AGTTAGAAAAACAAAATTATACCCCGT 57.919 29.630 0.00 0.00 0.00 5.28
744 771 9.695526 GTTAGAAAAACAAAATTATACCCCGTT 57.304 29.630 0.00 0.00 0.00 4.44
759 786 5.156608 ACCCCGTTATATTTAAGGGATCG 57.843 43.478 14.08 5.84 43.17 3.69
760 787 4.019950 ACCCCGTTATATTTAAGGGATCGG 60.020 45.833 14.08 10.09 43.17 4.18
761 788 4.019950 CCCCGTTATATTTAAGGGATCGGT 60.020 45.833 14.08 0.00 43.17 4.69
762 789 5.173664 CCCGTTATATTTAAGGGATCGGTC 58.826 45.833 14.08 0.00 43.17 4.79
763 790 5.173664 CCGTTATATTTAAGGGATCGGTCC 58.826 45.833 6.02 6.02 43.17 4.46
771 798 4.734652 GGATCGGTCCAGCCAAAA 57.265 55.556 10.69 0.00 44.42 2.44
772 799 2.482326 GGATCGGTCCAGCCAAAAG 58.518 57.895 10.69 0.00 44.42 2.27
773 800 0.322546 GGATCGGTCCAGCCAAAAGT 60.323 55.000 10.69 0.00 44.42 2.66
774 801 1.534729 GATCGGTCCAGCCAAAAGTT 58.465 50.000 0.00 0.00 36.97 2.66
775 802 2.617021 GGATCGGTCCAGCCAAAAGTTA 60.617 50.000 10.69 0.00 44.42 2.24
776 803 2.178912 TCGGTCCAGCCAAAAGTTAG 57.821 50.000 0.00 0.00 36.97 2.34
777 804 1.418637 TCGGTCCAGCCAAAAGTTAGT 59.581 47.619 0.00 0.00 36.97 2.24
778 805 2.633967 TCGGTCCAGCCAAAAGTTAGTA 59.366 45.455 0.00 0.00 36.97 1.82
779 806 3.000727 CGGTCCAGCCAAAAGTTAGTAG 58.999 50.000 0.00 0.00 36.97 2.57
780 807 3.556423 CGGTCCAGCCAAAAGTTAGTAGT 60.556 47.826 0.00 0.00 36.97 2.73
781 808 3.751698 GGTCCAGCCAAAAGTTAGTAGTG 59.248 47.826 0.00 0.00 37.17 2.74
782 809 4.386711 GTCCAGCCAAAAGTTAGTAGTGT 58.613 43.478 0.00 0.00 0.00 3.55
783 810 5.511888 GGTCCAGCCAAAAGTTAGTAGTGTA 60.512 44.000 0.00 0.00 37.17 2.90
784 811 5.993441 GTCCAGCCAAAAGTTAGTAGTGTAA 59.007 40.000 0.00 0.00 0.00 2.41
785 812 6.484308 GTCCAGCCAAAAGTTAGTAGTGTAAA 59.516 38.462 0.00 0.00 0.00 2.01
786 813 7.174426 GTCCAGCCAAAAGTTAGTAGTGTAAAT 59.826 37.037 0.00 0.00 0.00 1.40
787 814 8.377034 TCCAGCCAAAAGTTAGTAGTGTAAATA 58.623 33.333 0.00 0.00 0.00 1.40
788 815 9.174166 CCAGCCAAAAGTTAGTAGTGTAAATAT 57.826 33.333 0.00 0.00 0.00 1.28
812 839 6.663944 ATTTTACTAAGCTTTACTCTGCCG 57.336 37.500 3.20 0.00 0.00 5.69
813 840 2.674796 ACTAAGCTTTACTCTGCCGG 57.325 50.000 3.20 0.00 0.00 6.13
814 841 2.176889 ACTAAGCTTTACTCTGCCGGA 58.823 47.619 5.05 0.00 0.00 5.14
815 842 2.766828 ACTAAGCTTTACTCTGCCGGAT 59.233 45.455 5.05 0.00 0.00 4.18
816 843 2.317530 AAGCTTTACTCTGCCGGATC 57.682 50.000 5.05 0.00 0.00 3.36
817 844 0.466124 AGCTTTACTCTGCCGGATCC 59.534 55.000 5.05 0.00 0.00 3.36
818 845 0.466124 GCTTTACTCTGCCGGATCCT 59.534 55.000 5.05 0.00 0.00 3.24
819 846 1.539280 GCTTTACTCTGCCGGATCCTC 60.539 57.143 5.05 1.86 0.00 3.71
820 847 1.069358 CTTTACTCTGCCGGATCCTCC 59.931 57.143 5.05 0.56 0.00 4.30
821 848 0.261991 TTACTCTGCCGGATCCTCCT 59.738 55.000 5.05 0.00 33.30 3.69
822 849 0.178987 TACTCTGCCGGATCCTCCTC 60.179 60.000 5.05 0.00 33.30 3.71
823 850 1.456518 CTCTGCCGGATCCTCCTCA 60.457 63.158 5.05 1.30 33.30 3.86
824 851 1.001631 TCTGCCGGATCCTCCTCAA 59.998 57.895 5.05 0.00 33.30 3.02
825 852 0.399091 TCTGCCGGATCCTCCTCAAT 60.399 55.000 5.05 0.00 33.30 2.57
826 853 0.471617 CTGCCGGATCCTCCTCAATT 59.528 55.000 5.05 0.00 33.30 2.32
827 854 0.918983 TGCCGGATCCTCCTCAATTT 59.081 50.000 5.05 0.00 33.30 1.82
828 855 1.284785 TGCCGGATCCTCCTCAATTTT 59.715 47.619 5.05 0.00 33.30 1.82
829 856 2.507886 TGCCGGATCCTCCTCAATTTTA 59.492 45.455 5.05 0.00 33.30 1.52
830 857 3.138283 TGCCGGATCCTCCTCAATTTTAT 59.862 43.478 5.05 0.00 33.30 1.40
831 858 4.349636 TGCCGGATCCTCCTCAATTTTATA 59.650 41.667 5.05 0.00 33.30 0.98
832 859 4.938226 GCCGGATCCTCCTCAATTTTATAG 59.062 45.833 5.05 0.00 33.30 1.31
833 860 5.513267 GCCGGATCCTCCTCAATTTTATAGT 60.513 44.000 5.05 0.00 33.30 2.12
834 861 6.534634 CCGGATCCTCCTCAATTTTATAGTT 58.465 40.000 10.75 0.00 33.30 2.24
835 862 6.428159 CCGGATCCTCCTCAATTTTATAGTTG 59.572 42.308 10.75 0.00 33.30 3.16
836 863 7.217200 CGGATCCTCCTCAATTTTATAGTTGA 58.783 38.462 10.75 0.00 33.30 3.18
837 864 7.880195 CGGATCCTCCTCAATTTTATAGTTGAT 59.120 37.037 10.75 0.00 34.18 2.57
838 865 9.225436 GGATCCTCCTCAATTTTATAGTTGATC 57.775 37.037 3.84 0.00 34.18 2.92
839 866 8.839310 ATCCTCCTCAATTTTATAGTTGATCG 57.161 34.615 0.00 0.00 34.18 3.69
840 867 7.217200 TCCTCCTCAATTTTATAGTTGATCGG 58.783 38.462 0.00 0.00 34.18 4.18
841 868 6.073003 CCTCCTCAATTTTATAGTTGATCGGC 60.073 42.308 0.00 0.00 34.18 5.54
842 869 6.591935 TCCTCAATTTTATAGTTGATCGGCT 58.408 36.000 0.00 0.00 34.18 5.52
843 870 7.732025 TCCTCAATTTTATAGTTGATCGGCTA 58.268 34.615 0.00 0.00 34.18 3.93
844 871 7.872993 TCCTCAATTTTATAGTTGATCGGCTAG 59.127 37.037 3.13 0.00 34.18 3.42
845 872 7.872993 CCTCAATTTTATAGTTGATCGGCTAGA 59.127 37.037 0.00 0.00 34.18 2.43
846 873 9.261180 CTCAATTTTATAGTTGATCGGCTAGAA 57.739 33.333 0.00 2.05 34.18 2.10
847 874 9.778741 TCAATTTTATAGTTGATCGGCTAGAAT 57.221 29.630 0.00 2.58 29.93 2.40
863 890 6.860790 GCTAGAATTAGCCTAAGTATCCCT 57.139 41.667 0.00 0.00 45.34 4.20
864 891 7.957992 GCTAGAATTAGCCTAAGTATCCCTA 57.042 40.000 0.00 0.00 45.34 3.53
865 892 8.002984 GCTAGAATTAGCCTAAGTATCCCTAG 57.997 42.308 0.00 0.00 45.34 3.02
866 893 7.616542 GCTAGAATTAGCCTAAGTATCCCTAGT 59.383 40.741 0.00 0.00 45.34 2.57
867 894 7.784470 AGAATTAGCCTAAGTATCCCTAGTG 57.216 40.000 0.00 0.00 0.00 2.74
868 895 6.726764 AGAATTAGCCTAAGTATCCCTAGTGG 59.273 42.308 0.00 0.00 0.00 4.00
869 896 2.610873 AGCCTAAGTATCCCTAGTGGC 58.389 52.381 0.00 0.00 39.40 5.01
870 897 2.180308 AGCCTAAGTATCCCTAGTGGCT 59.820 50.000 0.00 0.00 43.81 4.75
871 898 2.973406 GCCTAAGTATCCCTAGTGGCTT 59.027 50.000 0.00 0.00 36.52 4.35
872 899 3.244249 GCCTAAGTATCCCTAGTGGCTTG 60.244 52.174 0.00 0.00 36.52 4.01
873 900 3.244249 CCTAAGTATCCCTAGTGGCTTGC 60.244 52.174 0.00 0.00 0.00 4.01
874 901 1.879575 AGTATCCCTAGTGGCTTGCA 58.120 50.000 0.00 0.00 0.00 4.08
875 902 1.486726 AGTATCCCTAGTGGCTTGCAC 59.513 52.381 0.00 0.00 0.00 4.57
876 903 1.209504 GTATCCCTAGTGGCTTGCACA 59.790 52.381 0.00 0.00 0.00 4.57
877 904 0.698238 ATCCCTAGTGGCTTGCACAA 59.302 50.000 0.00 0.00 0.00 3.33
878 905 0.476338 TCCCTAGTGGCTTGCACAAA 59.524 50.000 0.00 0.00 0.00 2.83
879 906 0.883833 CCCTAGTGGCTTGCACAAAG 59.116 55.000 0.00 0.00 39.07 2.77
880 907 0.883833 CCTAGTGGCTTGCACAAAGG 59.116 55.000 0.00 0.00 36.30 3.11
916 943 7.201785 CGAACCTAACACCAAAAATAGGCATAT 60.202 37.037 0.00 0.00 38.79 1.78
948 975 2.704725 TTCAAAATGAACAGCCGCTC 57.295 45.000 0.00 0.00 30.26 5.03
949 976 1.603456 TCAAAATGAACAGCCGCTCA 58.397 45.000 0.00 0.00 0.00 4.26
950 977 1.536766 TCAAAATGAACAGCCGCTCAG 59.463 47.619 0.00 0.00 0.00 3.35
951 978 0.242017 AAAATGAACAGCCGCTCAGC 59.758 50.000 0.00 0.00 0.00 4.26
952 979 1.589716 AAATGAACAGCCGCTCAGCC 61.590 55.000 0.00 0.00 0.00 4.85
984 1011 1.758440 AAAGCTCAGTGGCCGAGTCA 61.758 55.000 7.81 0.00 32.83 3.41
1030 1058 2.757894 TCTACCTCTCATCCTCCCAC 57.242 55.000 0.00 0.00 0.00 4.61
1034 1062 1.127343 CCTCTCATCCTCCCACTTCC 58.873 60.000 0.00 0.00 0.00 3.46
1035 1063 1.343884 CCTCTCATCCTCCCACTTCCT 60.344 57.143 0.00 0.00 0.00 3.36
1117 1145 1.811359 CTTCAGCTTGGCCTCTTTCAG 59.189 52.381 3.32 0.00 0.00 3.02
1191 1219 1.676529 GCTCTGTCATCGCCTACAGTA 59.323 52.381 9.64 0.00 42.96 2.74
1192 1220 2.099263 GCTCTGTCATCGCCTACAGTAA 59.901 50.000 9.64 0.00 42.96 2.24
1193 1221 3.793801 GCTCTGTCATCGCCTACAGTAAG 60.794 52.174 9.64 4.07 42.96 2.34
1194 1222 3.617284 TCTGTCATCGCCTACAGTAAGA 58.383 45.455 9.64 0.00 42.96 2.10
1204 1232 4.989168 CGCCTACAGTAAGAAGTTCTGTTT 59.011 41.667 6.06 0.00 41.66 2.83
1212 1240 8.837389 ACAGTAAGAAGTTCTGTTTCAATTACC 58.163 33.333 6.06 0.00 39.00 2.85
1357 1385 2.648454 GCGATTTGCCACGGGTTT 59.352 55.556 0.00 0.00 37.76 3.27
1558 1586 0.679505 TACGTATCCTCAGCCCATGC 59.320 55.000 0.00 0.00 37.95 4.06
1607 1635 1.518102 GCACGAAAACGAACGACACTA 59.482 47.619 0.14 0.00 0.00 2.74
1621 1649 4.479619 ACGACACTAATACGGACTGTTTC 58.520 43.478 0.00 0.00 0.00 2.78
1633 1661 2.155279 GACTGTTTCCTTTCTCAGGCC 58.845 52.381 0.00 0.00 43.55 5.19
1810 1838 3.499737 GGCGCCAACATCCTCGTG 61.500 66.667 24.80 0.00 0.00 4.35
1976 2004 4.961511 TGTGCGACGACCACAGCC 62.962 66.667 0.00 0.00 38.21 4.85
2021 2049 0.036010 CAGCCATGGGAAGAGTCGTT 60.036 55.000 15.13 0.00 0.00 3.85
2022 2050 0.250513 AGCCATGGGAAGAGTCGTTC 59.749 55.000 15.13 0.00 0.00 3.95
2283 2334 4.569943 GCTGTGATCCTTCTCTGTTTGTA 58.430 43.478 0.00 0.00 0.00 2.41
2332 2385 3.874543 TGTGTTATGTGTGATTATCGCCC 59.125 43.478 3.14 0.00 0.00 6.13
2345 2398 5.746721 TGATTATCGCCCGTATATCGATTTG 59.253 40.000 1.71 0.00 42.18 2.32
2410 2463 8.028938 TGGTTTCTTCTTCAGCTTTTATAATGC 58.971 33.333 0.00 3.60 0.00 3.56
2419 2472 9.234384 CTTCAGCTTTTATAATGCATTCTTCAG 57.766 33.333 16.86 8.05 34.29 3.02
2420 2473 8.510243 TCAGCTTTTATAATGCATTCTTCAGA 57.490 30.769 16.86 0.00 34.29 3.27
2421 2474 8.400947 TCAGCTTTTATAATGCATTCTTCAGAC 58.599 33.333 16.86 2.56 34.29 3.51
2422 2475 8.186163 CAGCTTTTATAATGCATTCTTCAGACA 58.814 33.333 16.86 0.00 34.29 3.41
2423 2476 8.910944 AGCTTTTATAATGCATTCTTCAGACAT 58.089 29.630 16.86 3.72 34.29 3.06
2424 2477 8.965172 GCTTTTATAATGCATTCTTCAGACATG 58.035 33.333 16.86 0.00 0.00 3.21
2429 2482 6.769134 AATGCATTCTTCAGACATGAATGA 57.231 33.333 5.99 0.00 44.25 2.57
2430 2483 5.813080 TGCATTCTTCAGACATGAATGAG 57.187 39.130 16.10 0.00 44.25 2.90
2431 2484 5.493809 TGCATTCTTCAGACATGAATGAGA 58.506 37.500 16.10 0.65 44.25 3.27
2432 2485 5.941647 TGCATTCTTCAGACATGAATGAGAA 59.058 36.000 16.10 8.89 44.25 2.87
2433 2486 6.431852 TGCATTCTTCAGACATGAATGAGAAA 59.568 34.615 16.10 2.23 44.25 2.52
2434 2487 6.746364 GCATTCTTCAGACATGAATGAGAAAC 59.254 38.462 16.10 3.42 44.25 2.78
2435 2488 6.808008 TTCTTCAGACATGAATGAGAAACC 57.192 37.500 0.00 0.00 44.32 3.27
2436 2489 5.868454 TCTTCAGACATGAATGAGAAACCA 58.132 37.500 0.00 0.00 44.32 3.67
2437 2490 5.702670 TCTTCAGACATGAATGAGAAACCAC 59.297 40.000 0.00 0.00 44.32 4.16
2438 2491 4.971939 TCAGACATGAATGAGAAACCACA 58.028 39.130 0.00 0.00 30.61 4.17
2439 2492 4.999311 TCAGACATGAATGAGAAACCACAG 59.001 41.667 0.00 0.00 30.61 3.66
2440 2493 3.755378 AGACATGAATGAGAAACCACAGC 59.245 43.478 0.00 0.00 0.00 4.40
2441 2494 3.489355 ACATGAATGAGAAACCACAGCA 58.511 40.909 0.00 0.00 0.00 4.41
2442 2495 3.890756 ACATGAATGAGAAACCACAGCAA 59.109 39.130 0.00 0.00 0.00 3.91
2443 2496 3.988379 TGAATGAGAAACCACAGCAAC 57.012 42.857 0.00 0.00 0.00 4.17
2444 2497 3.286353 TGAATGAGAAACCACAGCAACA 58.714 40.909 0.00 0.00 0.00 3.33
2445 2498 3.698539 TGAATGAGAAACCACAGCAACAA 59.301 39.130 0.00 0.00 0.00 2.83
2446 2499 3.996150 ATGAGAAACCACAGCAACAAG 57.004 42.857 0.00 0.00 0.00 3.16
2447 2500 2.722094 TGAGAAACCACAGCAACAAGT 58.278 42.857 0.00 0.00 0.00 3.16
2448 2501 3.088532 TGAGAAACCACAGCAACAAGTT 58.911 40.909 0.00 0.00 0.00 2.66
2449 2502 3.128589 TGAGAAACCACAGCAACAAGTTC 59.871 43.478 0.00 0.00 0.00 3.01
2450 2503 3.088532 AGAAACCACAGCAACAAGTTCA 58.911 40.909 0.00 0.00 0.00 3.18
2451 2504 3.701040 AGAAACCACAGCAACAAGTTCAT 59.299 39.130 0.00 0.00 0.00 2.57
2452 2505 3.441496 AACCACAGCAACAAGTTCATG 57.559 42.857 0.00 0.00 0.00 3.07
2453 2506 1.067516 ACCACAGCAACAAGTTCATGC 59.932 47.619 1.91 1.91 40.34 4.06
2454 2507 1.603678 CCACAGCAACAAGTTCATGCC 60.604 52.381 5.92 0.00 40.93 4.40
2455 2508 1.338973 CACAGCAACAAGTTCATGCCT 59.661 47.619 5.92 0.00 40.93 4.75
2456 2509 2.553602 CACAGCAACAAGTTCATGCCTA 59.446 45.455 5.92 0.00 40.93 3.93
2457 2510 2.816087 ACAGCAACAAGTTCATGCCTAG 59.184 45.455 5.92 0.00 40.93 3.02
2458 2511 1.815003 AGCAACAAGTTCATGCCTAGC 59.185 47.619 5.92 0.00 40.93 3.42
2459 2512 1.815003 GCAACAAGTTCATGCCTAGCT 59.185 47.619 0.00 0.00 34.03 3.32
2460 2513 2.159462 GCAACAAGTTCATGCCTAGCTC 60.159 50.000 0.00 0.00 34.03 4.09
2461 2514 3.341823 CAACAAGTTCATGCCTAGCTCT 58.658 45.455 0.00 0.00 0.00 4.09
2462 2515 3.710209 ACAAGTTCATGCCTAGCTCTT 57.290 42.857 0.00 0.00 0.00 2.85
2463 2516 3.604582 ACAAGTTCATGCCTAGCTCTTC 58.395 45.455 0.00 0.00 0.00 2.87
2464 2517 3.008375 ACAAGTTCATGCCTAGCTCTTCA 59.992 43.478 0.00 0.00 0.00 3.02
2465 2518 3.258971 AGTTCATGCCTAGCTCTTCAC 57.741 47.619 0.00 0.00 0.00 3.18
2466 2519 2.093235 AGTTCATGCCTAGCTCTTCACC 60.093 50.000 0.00 0.00 0.00 4.02
2467 2520 1.571955 TCATGCCTAGCTCTTCACCA 58.428 50.000 0.00 0.00 0.00 4.17
2468 2521 2.121948 TCATGCCTAGCTCTTCACCAT 58.878 47.619 0.00 0.00 0.00 3.55
2469 2522 2.103771 TCATGCCTAGCTCTTCACCATC 59.896 50.000 0.00 0.00 0.00 3.51
2470 2523 1.871418 TGCCTAGCTCTTCACCATCT 58.129 50.000 0.00 0.00 0.00 2.90
2471 2524 2.191400 TGCCTAGCTCTTCACCATCTT 58.809 47.619 0.00 0.00 0.00 2.40
2472 2525 2.169352 TGCCTAGCTCTTCACCATCTTC 59.831 50.000 0.00 0.00 0.00 2.87
2473 2526 2.433970 GCCTAGCTCTTCACCATCTTCT 59.566 50.000 0.00 0.00 0.00 2.85
2474 2527 3.492482 GCCTAGCTCTTCACCATCTTCTC 60.492 52.174 0.00 0.00 0.00 2.87
2475 2528 3.960102 CCTAGCTCTTCACCATCTTCTCT 59.040 47.826 0.00 0.00 0.00 3.10
2476 2529 4.405358 CCTAGCTCTTCACCATCTTCTCTT 59.595 45.833 0.00 0.00 0.00 2.85
2477 2530 4.470334 AGCTCTTCACCATCTTCTCTTC 57.530 45.455 0.00 0.00 0.00 2.87
2478 2531 3.837146 AGCTCTTCACCATCTTCTCTTCA 59.163 43.478 0.00 0.00 0.00 3.02
2479 2532 3.932089 GCTCTTCACCATCTTCTCTTCAC 59.068 47.826 0.00 0.00 0.00 3.18
2480 2533 4.502962 CTCTTCACCATCTTCTCTTCACC 58.497 47.826 0.00 0.00 0.00 4.02
2481 2534 3.903714 TCTTCACCATCTTCTCTTCACCA 59.096 43.478 0.00 0.00 0.00 4.17
2482 2535 4.533707 TCTTCACCATCTTCTCTTCACCAT 59.466 41.667 0.00 0.00 0.00 3.55
2483 2536 4.478206 TCACCATCTTCTCTTCACCATC 57.522 45.455 0.00 0.00 0.00 3.51
2484 2537 4.099633 TCACCATCTTCTCTTCACCATCT 58.900 43.478 0.00 0.00 0.00 2.90
2485 2538 4.533707 TCACCATCTTCTCTTCACCATCTT 59.466 41.667 0.00 0.00 0.00 2.40
2486 2539 4.874966 CACCATCTTCTCTTCACCATCTTC 59.125 45.833 0.00 0.00 0.00 2.87
2487 2540 4.782156 ACCATCTTCTCTTCACCATCTTCT 59.218 41.667 0.00 0.00 0.00 2.85
2488 2541 5.117584 CCATCTTCTCTTCACCATCTTCTG 58.882 45.833 0.00 0.00 0.00 3.02
2545 2611 2.823829 GCTAAACTGATGCGCGGGG 61.824 63.158 8.83 0.00 0.00 5.73
2694 2766 4.988598 CACGCGGCCTCCACACTT 62.989 66.667 12.47 0.00 0.00 3.16
2798 2875 1.908793 CCGGGGATCGTCTGGCTAT 60.909 63.158 0.00 0.00 37.11 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 6.627243 TCTTCATCTTCAATTCAAATGGCTG 58.373 36.000 0.00 0.00 0.00 4.85
115 117 8.499967 CATCATTGAAAATCATGCAAAGAACAA 58.500 29.630 0.00 0.00 0.00 2.83
123 125 7.810759 CCGAATATCATCATTGAAAATCATGCA 59.189 33.333 0.00 0.00 34.96 3.96
158 160 2.421424 GCTACCAAATTGTGAGCCTCTG 59.579 50.000 5.37 0.00 0.00 3.35
164 166 6.149308 TGAGTTGTATGCTACCAAATTGTGAG 59.851 38.462 0.00 0.00 0.00 3.51
318 342 6.744112 TGCATTTCTTCGAAACTTAAACCAT 58.256 32.000 0.00 0.00 0.00 3.55
328 352 1.809547 TCCGCATGCATTTCTTCGAAA 59.190 42.857 19.57 0.00 0.00 3.46
406 432 0.038166 ATTGCATCGGACCAACACCT 59.962 50.000 0.00 0.00 0.00 4.00
415 441 4.707105 ACATAGTCATCAATTGCATCGGA 58.293 39.130 0.00 0.00 0.00 4.55
449 475 1.598701 GGCCTCCAAGATTGTGTGGC 61.599 60.000 0.00 13.89 37.32 5.01
450 476 1.308069 CGGCCTCCAAGATTGTGTGG 61.308 60.000 0.00 0.00 36.13 4.17
451 477 0.606401 ACGGCCTCCAAGATTGTGTG 60.606 55.000 0.00 0.00 0.00 3.82
498 524 4.069304 TCAAGTACTCCGGTCCAAAAATG 58.931 43.478 0.00 0.00 0.00 2.32
523 549 2.420129 GCATATCTTCCTCGTTGGGTGT 60.420 50.000 0.00 0.00 36.20 4.16
542 568 2.961741 CTCTCTACCATTAGCCTCTGCA 59.038 50.000 0.00 0.00 41.13 4.41
543 569 2.962421 ACTCTCTACCATTAGCCTCTGC 59.038 50.000 0.00 0.00 37.95 4.26
594 620 2.738846 CCAGTGCATACAGTCAAGTGAC 59.261 50.000 3.12 3.12 45.08 3.67
617 643 5.535783 TCATCCTGCAGAACAATTTTTCAGA 59.464 36.000 17.39 0.00 0.00 3.27
646 673 5.555017 AGTTGCAGTGATCTTTGTACTGAT 58.445 37.500 12.90 0.00 43.35 2.90
658 685 4.333649 GCACACATATGTAGTTGCAGTGAT 59.666 41.667 22.32 0.00 36.72 3.06
659 686 3.684305 GCACACATATGTAGTTGCAGTGA 59.316 43.478 22.32 0.00 36.72 3.41
669 696 9.203421 GCAACTACATATTAGCACACATATGTA 57.797 33.333 8.32 10.24 42.36 2.29
670 697 7.714813 TGCAACTACATATTAGCACACATATGT 59.285 33.333 1.41 1.41 44.91 2.29
671 698 8.086851 TGCAACTACATATTAGCACACATATG 57.913 34.615 0.00 0.00 38.73 1.78
672 699 8.675705 TTGCAACTACATATTAGCACACATAT 57.324 30.769 0.00 0.00 0.00 1.78
673 700 8.558700 CATTGCAACTACATATTAGCACACATA 58.441 33.333 0.00 0.00 0.00 2.29
674 701 7.067372 ACATTGCAACTACATATTAGCACACAT 59.933 33.333 0.00 0.00 0.00 3.21
675 702 6.374053 ACATTGCAACTACATATTAGCACACA 59.626 34.615 0.00 0.00 0.00 3.72
676 703 6.688385 CACATTGCAACTACATATTAGCACAC 59.312 38.462 0.00 0.00 0.00 3.82
677 704 6.597280 TCACATTGCAACTACATATTAGCACA 59.403 34.615 0.00 0.00 0.00 4.57
678 705 7.015226 TCACATTGCAACTACATATTAGCAC 57.985 36.000 0.00 0.00 0.00 4.40
679 706 7.336679 AGTTCACATTGCAACTACATATTAGCA 59.663 33.333 0.00 0.00 30.80 3.49
680 707 7.697691 AGTTCACATTGCAACTACATATTAGC 58.302 34.615 0.00 0.00 30.80 3.09
683 710 9.448438 TTCTAGTTCACATTGCAACTACATATT 57.552 29.630 0.00 0.00 34.60 1.28
684 711 9.618890 ATTCTAGTTCACATTGCAACTACATAT 57.381 29.630 0.00 0.00 34.60 1.78
685 712 9.448438 AATTCTAGTTCACATTGCAACTACATA 57.552 29.630 0.00 0.00 34.60 2.29
686 713 7.928307 ATTCTAGTTCACATTGCAACTACAT 57.072 32.000 0.00 0.00 34.60 2.29
687 714 7.744087 AATTCTAGTTCACATTGCAACTACA 57.256 32.000 0.00 0.00 34.60 2.74
688 715 7.750903 GGAAATTCTAGTTCACATTGCAACTAC 59.249 37.037 0.00 0.00 34.60 2.73
689 716 7.665559 AGGAAATTCTAGTTCACATTGCAACTA 59.334 33.333 0.00 0.00 34.60 2.24
690 717 6.491403 AGGAAATTCTAGTTCACATTGCAACT 59.509 34.615 0.00 0.00 36.75 3.16
691 718 6.681777 AGGAAATTCTAGTTCACATTGCAAC 58.318 36.000 0.00 0.00 0.00 4.17
692 719 6.899393 AGGAAATTCTAGTTCACATTGCAA 57.101 33.333 0.00 0.00 0.00 4.08
693 720 7.665559 ACTTAGGAAATTCTAGTTCACATTGCA 59.334 33.333 0.00 0.00 0.00 4.08
694 721 8.045176 ACTTAGGAAATTCTAGTTCACATTGC 57.955 34.615 0.00 0.00 0.00 3.56
716 743 9.917129 CGGGGTATAATTTTGTTTTTCTAACTT 57.083 29.630 0.00 0.00 0.00 2.66
717 744 9.081204 ACGGGGTATAATTTTGTTTTTCTAACT 57.919 29.630 0.00 0.00 0.00 2.24
718 745 9.695526 AACGGGGTATAATTTTGTTTTTCTAAC 57.304 29.630 0.00 0.00 0.00 2.34
733 760 8.477256 CGATCCCTTAAATATAACGGGGTATAA 58.523 37.037 0.00 0.00 33.61 0.98
734 761 7.069826 CCGATCCCTTAAATATAACGGGGTATA 59.930 40.741 0.00 0.00 33.61 1.47
735 762 6.126968 CCGATCCCTTAAATATAACGGGGTAT 60.127 42.308 0.00 0.00 33.61 2.73
736 763 5.187576 CCGATCCCTTAAATATAACGGGGTA 59.812 44.000 0.00 0.00 33.61 3.69
737 764 4.019950 CCGATCCCTTAAATATAACGGGGT 60.020 45.833 0.00 0.00 33.61 4.95
738 765 4.019950 ACCGATCCCTTAAATATAACGGGG 60.020 45.833 0.00 0.00 41.68 5.73
739 766 5.156608 ACCGATCCCTTAAATATAACGGG 57.843 43.478 0.00 0.00 41.68 5.28
740 767 5.173664 GGACCGATCCCTTAAATATAACGG 58.826 45.833 0.00 0.00 39.39 4.44
741 768 5.786311 TGGACCGATCCCTTAAATATAACG 58.214 41.667 0.00 0.00 45.59 3.18
742 769 5.642491 GCTGGACCGATCCCTTAAATATAAC 59.358 44.000 0.00 0.00 45.59 1.89
743 770 5.280317 GGCTGGACCGATCCCTTAAATATAA 60.280 44.000 0.00 0.00 45.59 0.98
744 771 4.224370 GGCTGGACCGATCCCTTAAATATA 59.776 45.833 0.00 0.00 45.59 0.86
745 772 3.009143 GGCTGGACCGATCCCTTAAATAT 59.991 47.826 0.00 0.00 45.59 1.28
746 773 2.370849 GGCTGGACCGATCCCTTAAATA 59.629 50.000 0.00 0.00 45.59 1.40
747 774 1.143073 GGCTGGACCGATCCCTTAAAT 59.857 52.381 0.00 0.00 45.59 1.40
748 775 0.544697 GGCTGGACCGATCCCTTAAA 59.455 55.000 0.00 0.00 45.59 1.52
749 776 0.619255 TGGCTGGACCGATCCCTTAA 60.619 55.000 0.00 0.00 45.59 1.85
750 777 0.619255 TTGGCTGGACCGATCCCTTA 60.619 55.000 0.00 0.00 45.59 2.69
751 778 1.497309 TTTGGCTGGACCGATCCCTT 61.497 55.000 0.00 0.00 45.59 3.95
752 779 1.497309 TTTTGGCTGGACCGATCCCT 61.497 55.000 0.00 0.00 45.59 4.20
753 780 1.001393 TTTTGGCTGGACCGATCCC 60.001 57.895 0.00 0.00 45.59 3.85
754 781 0.322546 ACTTTTGGCTGGACCGATCC 60.323 55.000 0.00 0.00 46.48 3.36
755 782 1.534729 AACTTTTGGCTGGACCGATC 58.465 50.000 0.00 0.00 43.94 3.69
756 783 2.039879 ACTAACTTTTGGCTGGACCGAT 59.960 45.455 0.00 0.00 43.94 4.18
757 784 1.418637 ACTAACTTTTGGCTGGACCGA 59.581 47.619 0.00 0.00 43.94 4.69
758 785 1.892209 ACTAACTTTTGGCTGGACCG 58.108 50.000 0.00 0.00 43.94 4.79
759 786 3.751698 CACTACTAACTTTTGGCTGGACC 59.248 47.826 0.00 0.00 39.84 4.46
760 787 4.386711 ACACTACTAACTTTTGGCTGGAC 58.613 43.478 0.00 0.00 0.00 4.02
761 788 4.699925 ACACTACTAACTTTTGGCTGGA 57.300 40.909 0.00 0.00 0.00 3.86
762 789 6.870971 TTTACACTACTAACTTTTGGCTGG 57.129 37.500 0.00 0.00 0.00 4.85
786 813 9.472361 CGGCAGAGTAAAGCTTAGTAAAATATA 57.528 33.333 0.00 0.00 0.00 0.86
787 814 7.441458 CCGGCAGAGTAAAGCTTAGTAAAATAT 59.559 37.037 0.00 0.00 0.00 1.28
788 815 6.759827 CCGGCAGAGTAAAGCTTAGTAAAATA 59.240 38.462 0.00 0.00 0.00 1.40
789 816 5.585047 CCGGCAGAGTAAAGCTTAGTAAAAT 59.415 40.000 0.00 0.00 0.00 1.82
790 817 4.933400 CCGGCAGAGTAAAGCTTAGTAAAA 59.067 41.667 0.00 0.00 0.00 1.52
791 818 4.221262 TCCGGCAGAGTAAAGCTTAGTAAA 59.779 41.667 0.00 0.00 0.00 2.01
792 819 3.765511 TCCGGCAGAGTAAAGCTTAGTAA 59.234 43.478 0.00 0.00 0.00 2.24
793 820 3.359033 TCCGGCAGAGTAAAGCTTAGTA 58.641 45.455 0.00 0.00 0.00 1.82
794 821 2.176889 TCCGGCAGAGTAAAGCTTAGT 58.823 47.619 0.00 0.00 0.00 2.24
795 822 2.961526 TCCGGCAGAGTAAAGCTTAG 57.038 50.000 0.00 0.00 0.00 2.18
796 823 2.102588 GGATCCGGCAGAGTAAAGCTTA 59.897 50.000 0.00 0.00 0.00 3.09
797 824 1.134371 GGATCCGGCAGAGTAAAGCTT 60.134 52.381 0.00 0.00 0.00 3.74
798 825 0.466124 GGATCCGGCAGAGTAAAGCT 59.534 55.000 0.00 0.00 0.00 3.74
799 826 0.466124 AGGATCCGGCAGAGTAAAGC 59.534 55.000 5.98 0.00 0.00 3.51
800 827 2.517650 GAGGATCCGGCAGAGTAAAG 57.482 55.000 5.98 0.00 0.00 1.85
813 840 8.930760 CGATCAACTATAAAATTGAGGAGGATC 58.069 37.037 0.00 0.00 38.19 3.36
814 841 7.880195 CCGATCAACTATAAAATTGAGGAGGAT 59.120 37.037 0.00 0.00 38.19 3.24
815 842 7.217200 CCGATCAACTATAAAATTGAGGAGGA 58.783 38.462 0.00 0.00 38.19 3.71
816 843 6.073003 GCCGATCAACTATAAAATTGAGGAGG 60.073 42.308 0.00 0.00 38.19 4.30
817 844 6.708054 AGCCGATCAACTATAAAATTGAGGAG 59.292 38.462 0.00 0.00 38.19 3.69
818 845 6.591935 AGCCGATCAACTATAAAATTGAGGA 58.408 36.000 0.00 0.00 38.19 3.71
819 846 6.867662 AGCCGATCAACTATAAAATTGAGG 57.132 37.500 0.00 0.00 38.19 3.86
820 847 8.818141 TCTAGCCGATCAACTATAAAATTGAG 57.182 34.615 0.00 0.00 38.19 3.02
821 848 9.778741 ATTCTAGCCGATCAACTATAAAATTGA 57.221 29.630 0.00 0.00 39.09 2.57
825 852 9.204570 GCTAATTCTAGCCGATCAACTATAAAA 57.795 33.333 0.00 0.00 44.22 1.52
826 853 8.758633 GCTAATTCTAGCCGATCAACTATAAA 57.241 34.615 0.00 0.00 44.22 1.40
853 880 3.134081 GTGCAAGCCACTAGGGATACTTA 59.866 47.826 0.00 0.00 41.35 2.24
854 881 2.092914 GTGCAAGCCACTAGGGATACTT 60.093 50.000 0.00 0.00 41.35 2.24
855 882 1.486726 GTGCAAGCCACTAGGGATACT 59.513 52.381 0.00 0.00 41.35 2.12
856 883 1.209504 TGTGCAAGCCACTAGGGATAC 59.790 52.381 0.00 0.00 44.92 2.24
857 884 1.578897 TGTGCAAGCCACTAGGGATA 58.421 50.000 0.00 0.00 44.92 2.59
858 885 0.698238 TTGTGCAAGCCACTAGGGAT 59.302 50.000 0.00 0.00 44.92 3.85
859 886 0.476338 TTTGTGCAAGCCACTAGGGA 59.524 50.000 0.00 0.00 44.92 4.20
860 887 0.883833 CTTTGTGCAAGCCACTAGGG 59.116 55.000 0.00 0.00 44.92 3.53
861 888 0.883833 CCTTTGTGCAAGCCACTAGG 59.116 55.000 0.00 0.00 44.92 3.02
862 889 1.609208 ACCTTTGTGCAAGCCACTAG 58.391 50.000 0.00 0.00 44.92 2.57
863 890 2.940994 TACCTTTGTGCAAGCCACTA 57.059 45.000 0.00 0.00 44.92 2.74
864 891 2.292828 ATACCTTTGTGCAAGCCACT 57.707 45.000 0.00 0.00 44.92 4.00
865 892 4.718940 ATAATACCTTTGTGCAAGCCAC 57.281 40.909 0.00 0.00 44.90 5.01
866 893 5.124776 GTGTATAATACCTTTGTGCAAGCCA 59.875 40.000 0.00 0.00 0.00 4.75
867 894 5.578776 GTGTATAATACCTTTGTGCAAGCC 58.421 41.667 0.00 0.00 0.00 4.35
868 895 5.064198 TCGTGTATAATACCTTTGTGCAAGC 59.936 40.000 0.00 0.00 0.00 4.01
869 896 6.656314 TCGTGTATAATACCTTTGTGCAAG 57.344 37.500 0.00 0.00 0.00 4.01
870 897 6.128227 GGTTCGTGTATAATACCTTTGTGCAA 60.128 38.462 0.00 0.00 0.00 4.08
871 898 5.352016 GGTTCGTGTATAATACCTTTGTGCA 59.648 40.000 0.00 0.00 0.00 4.57
872 899 5.583457 AGGTTCGTGTATAATACCTTTGTGC 59.417 40.000 0.00 0.00 35.77 4.57
873 900 8.598075 GTTAGGTTCGTGTATAATACCTTTGTG 58.402 37.037 0.00 0.00 39.76 3.33
874 901 8.313292 TGTTAGGTTCGTGTATAATACCTTTGT 58.687 33.333 0.00 0.00 39.76 2.83
875 902 8.598075 GTGTTAGGTTCGTGTATAATACCTTTG 58.402 37.037 0.00 0.00 39.76 2.77
876 903 7.765819 GGTGTTAGGTTCGTGTATAATACCTTT 59.234 37.037 0.00 0.00 39.76 3.11
877 904 7.093377 TGGTGTTAGGTTCGTGTATAATACCTT 60.093 37.037 14.68 0.00 39.08 3.50
878 905 6.380846 TGGTGTTAGGTTCGTGTATAATACCT 59.619 38.462 14.68 0.00 39.08 3.08
879 906 6.572519 TGGTGTTAGGTTCGTGTATAATACC 58.427 40.000 10.05 10.05 38.90 2.73
880 907 8.477984 TTTGGTGTTAGGTTCGTGTATAATAC 57.522 34.615 0.00 0.00 0.00 1.89
935 962 2.437359 GGCTGAGCGGCTGTTCAT 60.437 61.111 12.88 0.00 34.63 2.57
948 975 2.787994 CTTTATAGATGGGCTGGGCTG 58.212 52.381 0.00 0.00 0.00 4.85
949 976 1.074566 GCTTTATAGATGGGCTGGGCT 59.925 52.381 0.00 0.00 0.00 5.19
950 977 1.074566 AGCTTTATAGATGGGCTGGGC 59.925 52.381 0.00 0.00 31.68 5.36
951 978 2.373169 TGAGCTTTATAGATGGGCTGGG 59.627 50.000 0.00 0.00 33.13 4.45
952 979 3.072184 ACTGAGCTTTATAGATGGGCTGG 59.928 47.826 0.00 0.00 33.13 4.85
984 1011 3.630769 TGTCGCTTAGAATACGGATCAGT 59.369 43.478 3.43 3.43 0.00 3.41
1030 1058 2.716217 AGAATGGCCGAGAAAAGGAAG 58.284 47.619 0.00 0.00 0.00 3.46
1034 1062 2.356069 GGCTTAGAATGGCCGAGAAAAG 59.644 50.000 0.00 0.05 38.91 2.27
1035 1063 2.365582 GGCTTAGAATGGCCGAGAAAA 58.634 47.619 0.00 0.00 38.91 2.29
1177 1205 4.705507 AGAACTTCTTACTGTAGGCGATGA 59.294 41.667 0.00 0.00 0.00 2.92
1191 1219 5.298276 TGCGGTAATTGAAACAGAACTTCTT 59.702 36.000 0.00 0.00 0.00 2.52
1192 1220 4.819630 TGCGGTAATTGAAACAGAACTTCT 59.180 37.500 0.00 0.00 0.00 2.85
1193 1221 4.909880 GTGCGGTAATTGAAACAGAACTTC 59.090 41.667 0.00 0.00 0.00 3.01
1194 1222 4.336993 TGTGCGGTAATTGAAACAGAACTT 59.663 37.500 0.00 0.00 0.00 2.66
1204 1232 1.202279 GCATGCATGTGCGGTAATTGA 60.202 47.619 26.79 0.00 45.83 2.57
1270 1298 5.893897 TGGCTGCAATTTTTCAACTTTTT 57.106 30.435 0.50 0.00 0.00 1.94
1278 1306 3.062042 CTCACCTTGGCTGCAATTTTTC 58.938 45.455 0.50 0.00 0.00 2.29
1558 1586 1.531677 CCGGAAAAGCGCACACATATG 60.532 52.381 11.47 0.00 0.00 1.78
1750 1778 4.241555 GCGATGGTGCCGAGGGAT 62.242 66.667 0.00 0.00 0.00 3.85
1948 1976 3.057736 GGTCGTCGCACATGTATAGGTAT 60.058 47.826 0.00 0.00 0.00 2.73
1954 1982 0.245266 TGTGGTCGTCGCACATGTAT 59.755 50.000 0.00 0.00 0.00 2.29
2021 2049 0.105964 CCGAAGGCATTATGGACCGA 59.894 55.000 0.00 0.00 46.14 4.69
2022 2050 2.616969 CCGAAGGCATTATGGACCG 58.383 57.895 0.00 0.00 46.14 4.79
2292 2343 4.204012 ACACAAACAGAGAAAATTCGGGA 58.796 39.130 0.00 0.00 0.00 5.14
2293 2344 4.568152 ACACAAACAGAGAAAATTCGGG 57.432 40.909 0.00 0.00 0.00 5.14
2332 2385 8.858003 AATATGTAGCTCCAAATCGATATACG 57.142 34.615 0.00 0.00 44.09 3.06
2373 2426 1.815003 GAAGAAACCACCAGGATGCAG 59.185 52.381 0.00 0.00 38.69 4.41
2410 2463 7.094506 TGGTTTCTCATTCATGTCTGAAGAATG 60.095 37.037 16.40 16.40 44.32 2.67
2419 2472 3.503363 TGCTGTGGTTTCTCATTCATGTC 59.497 43.478 0.00 0.00 0.00 3.06
2420 2473 3.489355 TGCTGTGGTTTCTCATTCATGT 58.511 40.909 0.00 0.00 0.00 3.21
2421 2474 4.232221 GTTGCTGTGGTTTCTCATTCATG 58.768 43.478 0.00 0.00 0.00 3.07
2422 2475 3.890756 TGTTGCTGTGGTTTCTCATTCAT 59.109 39.130 0.00 0.00 0.00 2.57
2423 2476 3.286353 TGTTGCTGTGGTTTCTCATTCA 58.714 40.909 0.00 0.00 0.00 2.57
2424 2477 3.988379 TGTTGCTGTGGTTTCTCATTC 57.012 42.857 0.00 0.00 0.00 2.67
2425 2478 3.701040 ACTTGTTGCTGTGGTTTCTCATT 59.299 39.130 0.00 0.00 0.00 2.57
2426 2479 3.290710 ACTTGTTGCTGTGGTTTCTCAT 58.709 40.909 0.00 0.00 0.00 2.90
2427 2480 2.722094 ACTTGTTGCTGTGGTTTCTCA 58.278 42.857 0.00 0.00 0.00 3.27
2428 2481 3.128589 TGAACTTGTTGCTGTGGTTTCTC 59.871 43.478 0.00 0.00 0.00 2.87
2429 2482 3.088532 TGAACTTGTTGCTGTGGTTTCT 58.911 40.909 0.00 0.00 0.00 2.52
2430 2483 3.502191 TGAACTTGTTGCTGTGGTTTC 57.498 42.857 0.00 0.00 0.00 2.78
2431 2484 3.784338 CATGAACTTGTTGCTGTGGTTT 58.216 40.909 0.00 0.00 0.00 3.27
2432 2485 2.481795 GCATGAACTTGTTGCTGTGGTT 60.482 45.455 0.00 0.00 33.61 3.67
2433 2486 1.067516 GCATGAACTTGTTGCTGTGGT 59.932 47.619 0.00 0.00 33.61 4.16
2434 2487 1.603678 GGCATGAACTTGTTGCTGTGG 60.604 52.381 0.00 0.00 36.62 4.17
2435 2488 1.338973 AGGCATGAACTTGTTGCTGTG 59.661 47.619 0.00 0.00 36.62 3.66
2436 2489 1.696063 AGGCATGAACTTGTTGCTGT 58.304 45.000 0.00 0.00 36.62 4.40
2437 2490 2.415090 GCTAGGCATGAACTTGTTGCTG 60.415 50.000 0.00 0.00 36.62 4.41
2438 2491 1.815003 GCTAGGCATGAACTTGTTGCT 59.185 47.619 0.00 0.00 36.62 3.91
2439 2492 1.815003 AGCTAGGCATGAACTTGTTGC 59.185 47.619 0.00 0.00 35.64 4.17
2440 2493 3.341823 AGAGCTAGGCATGAACTTGTTG 58.658 45.455 0.00 0.00 0.00 3.33
2441 2494 3.710209 AGAGCTAGGCATGAACTTGTT 57.290 42.857 0.00 0.00 0.00 2.83
2442 2495 3.008375 TGAAGAGCTAGGCATGAACTTGT 59.992 43.478 0.00 0.00 0.00 3.16
2443 2496 3.373439 GTGAAGAGCTAGGCATGAACTTG 59.627 47.826 0.00 0.00 0.00 3.16
2444 2497 3.604582 GTGAAGAGCTAGGCATGAACTT 58.395 45.455 0.00 0.00 0.00 2.66
2445 2498 2.093235 GGTGAAGAGCTAGGCATGAACT 60.093 50.000 0.00 0.00 0.00 3.01
2446 2499 2.284190 GGTGAAGAGCTAGGCATGAAC 58.716 52.381 0.00 0.00 0.00 3.18
2447 2500 1.908619 TGGTGAAGAGCTAGGCATGAA 59.091 47.619 0.00 0.00 0.00 2.57
2448 2501 1.571955 TGGTGAAGAGCTAGGCATGA 58.428 50.000 0.00 0.00 0.00 3.07
2449 2502 2.104451 AGATGGTGAAGAGCTAGGCATG 59.896 50.000 0.00 0.00 0.00 4.06
2450 2503 2.406559 AGATGGTGAAGAGCTAGGCAT 58.593 47.619 0.00 0.00 0.00 4.40
2451 2504 1.871418 AGATGGTGAAGAGCTAGGCA 58.129 50.000 0.00 0.00 0.00 4.75
2452 2505 2.433970 AGAAGATGGTGAAGAGCTAGGC 59.566 50.000 0.00 0.00 0.00 3.93
2453 2506 3.960102 AGAGAAGATGGTGAAGAGCTAGG 59.040 47.826 0.00 0.00 0.00 3.02
2454 2507 5.126869 TGAAGAGAAGATGGTGAAGAGCTAG 59.873 44.000 0.00 0.00 0.00 3.42
2455 2508 5.019470 TGAAGAGAAGATGGTGAAGAGCTA 58.981 41.667 0.00 0.00 0.00 3.32
2456 2509 3.837146 TGAAGAGAAGATGGTGAAGAGCT 59.163 43.478 0.00 0.00 0.00 4.09
2457 2510 3.932089 GTGAAGAGAAGATGGTGAAGAGC 59.068 47.826 0.00 0.00 0.00 4.09
2458 2511 4.020751 TGGTGAAGAGAAGATGGTGAAGAG 60.021 45.833 0.00 0.00 0.00 2.85
2459 2512 3.903714 TGGTGAAGAGAAGATGGTGAAGA 59.096 43.478 0.00 0.00 0.00 2.87
2460 2513 4.277515 TGGTGAAGAGAAGATGGTGAAG 57.722 45.455 0.00 0.00 0.00 3.02
2461 2514 4.533707 AGATGGTGAAGAGAAGATGGTGAA 59.466 41.667 0.00 0.00 0.00 3.18
2462 2515 4.099633 AGATGGTGAAGAGAAGATGGTGA 58.900 43.478 0.00 0.00 0.00 4.02
2463 2516 4.484537 AGATGGTGAAGAGAAGATGGTG 57.515 45.455 0.00 0.00 0.00 4.17
2464 2517 4.782156 AGAAGATGGTGAAGAGAAGATGGT 59.218 41.667 0.00 0.00 0.00 3.55
2465 2518 5.105023 TCAGAAGATGGTGAAGAGAAGATGG 60.105 44.000 0.00 0.00 0.00 3.51
2466 2519 5.975282 TCAGAAGATGGTGAAGAGAAGATG 58.025 41.667 0.00 0.00 0.00 2.90
2467 2520 5.957168 TCTCAGAAGATGGTGAAGAGAAGAT 59.043 40.000 0.00 0.00 0.00 2.40
2468 2521 5.328565 TCTCAGAAGATGGTGAAGAGAAGA 58.671 41.667 0.00 0.00 0.00 2.87
2469 2522 5.653507 CTCTCAGAAGATGGTGAAGAGAAG 58.346 45.833 0.00 0.00 31.11 2.85
2470 2523 4.081752 GCTCTCAGAAGATGGTGAAGAGAA 60.082 45.833 0.00 0.00 31.11 2.87
2471 2524 3.446873 GCTCTCAGAAGATGGTGAAGAGA 59.553 47.826 0.00 0.00 0.00 3.10
2472 2525 3.195182 TGCTCTCAGAAGATGGTGAAGAG 59.805 47.826 0.00 0.00 0.00 2.85
2473 2526 3.168292 TGCTCTCAGAAGATGGTGAAGA 58.832 45.455 0.00 0.00 0.00 2.87
2474 2527 3.606595 TGCTCTCAGAAGATGGTGAAG 57.393 47.619 0.00 0.00 0.00 3.02
2475 2528 3.773667 AGATGCTCTCAGAAGATGGTGAA 59.226 43.478 0.00 0.00 0.00 3.18
2476 2529 3.372897 AGATGCTCTCAGAAGATGGTGA 58.627 45.455 0.00 0.00 0.00 4.02
2477 2530 3.493002 GGAGATGCTCTCAGAAGATGGTG 60.493 52.174 13.06 0.00 45.12 4.17
2478 2531 2.699846 GGAGATGCTCTCAGAAGATGGT 59.300 50.000 13.06 0.00 45.12 3.55
2479 2532 2.699321 TGGAGATGCTCTCAGAAGATGG 59.301 50.000 13.06 0.00 45.12 3.51
2480 2533 4.121317 GTTGGAGATGCTCTCAGAAGATG 58.879 47.826 13.06 0.00 45.12 2.90
2481 2534 3.773667 TGTTGGAGATGCTCTCAGAAGAT 59.226 43.478 13.06 0.00 45.12 2.40
2482 2535 3.168292 TGTTGGAGATGCTCTCAGAAGA 58.832 45.455 13.06 3.95 45.12 2.87
2483 2536 3.523547 CTGTTGGAGATGCTCTCAGAAG 58.476 50.000 13.06 4.03 45.12 2.85
2484 2537 2.354503 GCTGTTGGAGATGCTCTCAGAA 60.355 50.000 13.06 4.89 45.12 3.02
2485 2538 1.206610 GCTGTTGGAGATGCTCTCAGA 59.793 52.381 13.06 1.46 45.12 3.27
2486 2539 1.654317 GCTGTTGGAGATGCTCTCAG 58.346 55.000 13.06 0.00 45.12 3.35
2487 2540 0.108472 CGCTGTTGGAGATGCTCTCA 60.108 55.000 13.06 0.00 45.12 3.27
2488 2541 0.174389 TCGCTGTTGGAGATGCTCTC 59.826 55.000 5.01 5.01 42.66 3.20
2529 2582 2.822255 GCCCCGCGCATCAGTTTA 60.822 61.111 8.75 0.00 37.47 2.01
2545 2611 4.418401 TGGAGCGCGCCAAAATGC 62.418 61.111 31.47 15.20 34.31 3.56
2926 3007 2.598985 CCGGCGGCCTCTCTAGAT 60.599 66.667 15.42 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.