Multiple sequence alignment - TraesCS7D01G339400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G339400 chr7D 100.000 3216 0 0 1 3216 433722829 433726044 0.000000e+00 5939.0
1 TraesCS7D01G339400 chr7D 90.123 324 26 6 2403 2724 589064432 589064113 1.780000e-112 416.0
2 TraesCS7D01G339400 chr7D 89.057 265 23 5 2398 2661 478177966 478178225 1.110000e-84 324.0
3 TraesCS7D01G339400 chr7B 90.126 1195 50 29 1215 2399 451147774 451148910 0.000000e+00 1491.0
4 TraesCS7D01G339400 chr7B 90.331 786 55 9 475 1251 451146977 451147750 0.000000e+00 1011.0
5 TraesCS7D01G339400 chr7B 88.926 298 23 10 2432 2724 606588063 606588355 3.050000e-95 359.0
6 TraesCS7D01G339400 chr7A 90.520 1097 51 24 1296 2373 484395428 484396490 0.000000e+00 1400.0
7 TraesCS7D01G339400 chr7A 86.926 849 62 21 408 1245 484394613 484395423 0.000000e+00 907.0
8 TraesCS7D01G339400 chr5A 94.265 558 16 5 2649 3206 535376090 535376631 0.000000e+00 839.0
9 TraesCS7D01G339400 chr6D 97.814 366 3 2 2851 3216 456575212 456574852 7.570000e-176 627.0
10 TraesCS7D01G339400 chr6D 93.776 241 13 2 2398 2637 456575500 456575261 8.480000e-96 361.0
11 TraesCS7D01G339400 chr4D 97.541 366 6 2 2851 3216 195700803 195700441 9.800000e-175 623.0
12 TraesCS7D01G339400 chr4D 95.902 366 12 2 2851 3216 195701794 195701432 9.940000e-165 590.0
13 TraesCS7D01G339400 chr4D 92.562 242 14 4 2397 2637 195701090 195700852 8.540000e-91 344.0
14 TraesCS7D01G339400 chr4D 90.909 242 16 5 2397 2636 195702032 195701795 1.440000e-83 320.0
15 TraesCS7D01G339400 chr4D 91.358 81 6 1 2394 2474 403006339 403006418 3.390000e-20 110.0
16 TraesCS7D01G339400 chr1B 89.668 271 22 6 2432 2699 22892058 22892325 1.100000e-89 340.0
17 TraesCS7D01G339400 chr1B 97.959 49 0 1 2681 2728 212080642 212080690 2.060000e-12 84.2
18 TraesCS7D01G339400 chr1B 97.959 49 0 1 2681 2728 280097512 280097560 2.060000e-12 84.2
19 TraesCS7D01G339400 chr3B 87.086 302 32 5 2398 2699 350129607 350129313 5.140000e-88 335.0
20 TraesCS7D01G339400 chr3D 84.880 291 33 9 2445 2728 599051381 599051095 1.890000e-72 283.0
21 TraesCS7D01G339400 chr2D 77.913 412 72 17 1296 1703 593851631 593852027 4.150000e-59 239.0
22 TraesCS7D01G339400 chr2D 87.310 197 25 0 1507 1703 593857971 593858167 3.230000e-55 226.0
23 TraesCS7D01G339400 chr2D 86.802 197 26 0 1507 1703 594068258 594068062 1.500000e-53 220.0
24 TraesCS7D01G339400 chr2D 85.484 186 25 2 1834 2018 593852045 593852229 3.270000e-45 193.0
25 TraesCS7D01G339400 chr2D 85.484 186 25 2 1834 2018 593898182 593897998 3.270000e-45 193.0
26 TraesCS7D01G339400 chr2D 85.484 186 25 2 1834 2018 593918742 593918558 3.270000e-45 193.0
27 TraesCS7D01G339400 chr2B 78.186 408 66 20 1302 1703 720923455 720923065 4.150000e-59 239.0
28 TraesCS7D01G339400 chr2B 88.325 197 23 0 1507 1703 65143828 65144024 1.490000e-58 237.0
29 TraesCS7D01G339400 chr2B 86.559 186 23 2 1834 2018 720817970 720818154 1.510000e-48 204.0
30 TraesCS7D01G339400 chr2B 86.559 186 23 2 1834 2018 720913758 720913574 1.510000e-48 204.0
31 TraesCS7D01G339400 chr2B 85.484 186 25 2 1834 2018 720923047 720922863 3.270000e-45 193.0
32 TraesCS7D01G339400 chr2A 87.817 197 24 0 1507 1703 42226647 42226451 6.940000e-57 231.0
33 TraesCS7D01G339400 chr2A 86.869 198 26 0 1506 1703 728752975 728752778 4.180000e-54 222.0
34 TraesCS7D01G339400 chr2A 86.022 186 24 2 1834 2018 728727588 728727404 7.040000e-47 198.0
35 TraesCS7D01G339400 chr5B 77.978 277 44 13 2394 2660 293509560 293509829 1.190000e-34 158.0
36 TraesCS7D01G339400 chr5B 82.353 119 14 7 2397 2512 668533996 668534110 2.640000e-16 97.1
37 TraesCS7D01G339400 chr6B 100.000 47 0 0 2681 2727 143418483 143418529 1.590000e-13 87.9
38 TraesCS7D01G339400 chrUn 97.959 49 0 1 2681 2728 56372884 56372932 2.060000e-12 84.2
39 TraesCS7D01G339400 chr4B 97.959 49 0 1 2681 2728 57247315 57247363 2.060000e-12 84.2
40 TraesCS7D01G339400 chr4B 97.959 49 0 1 2681 2728 454307456 454307408 2.060000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G339400 chr7D 433722829 433726044 3215 False 5939.00 5939 100.0000 1 3216 1 chr7D.!!$F1 3215
1 TraesCS7D01G339400 chr7B 451146977 451148910 1933 False 1251.00 1491 90.2285 475 2399 2 chr7B.!!$F2 1924
2 TraesCS7D01G339400 chr7A 484394613 484396490 1877 False 1153.50 1400 88.7230 408 2373 2 chr7A.!!$F1 1965
3 TraesCS7D01G339400 chr5A 535376090 535376631 541 False 839.00 839 94.2650 2649 3206 1 chr5A.!!$F1 557
4 TraesCS7D01G339400 chr6D 456574852 456575500 648 True 494.00 627 95.7950 2398 3216 2 chr6D.!!$R1 818
5 TraesCS7D01G339400 chr4D 195700441 195702032 1591 True 469.25 623 94.2285 2397 3216 4 chr4D.!!$R1 819
6 TraesCS7D01G339400 chr2D 593851631 593852229 598 False 216.00 239 81.6985 1296 2018 2 chr2D.!!$F2 722
7 TraesCS7D01G339400 chr2B 720922863 720923455 592 True 216.00 239 81.8350 1302 2018 2 chr2B.!!$R2 716


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.389025 AAAGCAAAAGGCCAACGGAG 59.611 50.0 5.01 0.00 46.50 4.63 F
241 242 0.467290 AAGCAAAAGGCCAACGGAGA 60.467 50.0 5.01 0.00 46.50 3.71 F
642 643 0.528684 GAGGTGATGGCGAGCACTAC 60.529 60.0 16.71 7.55 38.61 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1851 0.178921 TCAGGCAACAGAGGAGGAGT 60.179 55.0 0.00 0.0 41.41 3.85 R
1805 1925 0.319083 ACAAACCACCTGCATGCATG 59.681 50.0 22.97 22.7 0.00 4.06 R
2474 2607 1.052124 ACCGGTTTGGAGAGTGGTGA 61.052 55.0 0.00 0.0 42.00 4.02 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.579564 AAACCAGGACGAAGATACTAGTC 57.420 43.478 0.00 0.00 0.00 2.59
23 24 4.232188 ACCAGGACGAAGATACTAGTCA 57.768 45.455 0.00 0.00 35.49 3.41
24 25 4.794334 ACCAGGACGAAGATACTAGTCAT 58.206 43.478 0.00 0.00 35.49 3.06
25 26 5.202004 ACCAGGACGAAGATACTAGTCATT 58.798 41.667 0.00 0.00 35.49 2.57
26 27 5.657302 ACCAGGACGAAGATACTAGTCATTT 59.343 40.000 0.00 0.00 35.49 2.32
27 28 6.832384 ACCAGGACGAAGATACTAGTCATTTA 59.168 38.462 0.00 0.00 35.49 1.40
28 29 7.341256 ACCAGGACGAAGATACTAGTCATTTAA 59.659 37.037 0.00 0.00 35.49 1.52
29 30 7.863375 CCAGGACGAAGATACTAGTCATTTAAG 59.137 40.741 0.00 0.00 35.49 1.85
30 31 7.380065 CAGGACGAAGATACTAGTCATTTAAGC 59.620 40.741 0.00 0.00 35.49 3.09
31 32 6.641723 GGACGAAGATACTAGTCATTTAAGCC 59.358 42.308 0.00 0.00 35.49 4.35
32 33 7.349412 ACGAAGATACTAGTCATTTAAGCCT 57.651 36.000 0.00 0.00 0.00 4.58
33 34 7.783042 ACGAAGATACTAGTCATTTAAGCCTT 58.217 34.615 0.00 0.00 0.00 4.35
34 35 7.707035 ACGAAGATACTAGTCATTTAAGCCTTG 59.293 37.037 0.00 0.00 0.00 3.61
35 36 7.707035 CGAAGATACTAGTCATTTAAGCCTTGT 59.293 37.037 0.00 0.00 0.00 3.16
37 38 9.819267 AAGATACTAGTCATTTAAGCCTTGTAC 57.181 33.333 0.00 0.00 0.00 2.90
38 39 8.978472 AGATACTAGTCATTTAAGCCTTGTACA 58.022 33.333 0.00 0.00 0.00 2.90
39 40 9.595823 GATACTAGTCATTTAAGCCTTGTACAA 57.404 33.333 8.28 8.28 0.00 2.41
41 42 8.268850 ACTAGTCATTTAAGCCTTGTACAATG 57.731 34.615 9.13 7.68 0.00 2.82
42 43 8.100791 ACTAGTCATTTAAGCCTTGTACAATGA 58.899 33.333 14.26 7.49 0.00 2.57
43 44 7.759489 AGTCATTTAAGCCTTGTACAATGAA 57.241 32.000 14.26 1.37 33.57 2.57
44 45 8.177119 AGTCATTTAAGCCTTGTACAATGAAA 57.823 30.769 14.26 4.19 33.57 2.69
45 46 8.299570 AGTCATTTAAGCCTTGTACAATGAAAG 58.700 33.333 14.26 0.00 33.57 2.62
46 47 7.542130 GTCATTTAAGCCTTGTACAATGAAAGG 59.458 37.037 14.26 10.22 42.86 3.11
47 48 6.969993 TTTAAGCCTTGTACAATGAAAGGT 57.030 33.333 14.26 2.61 42.13 3.50
48 49 4.853924 AAGCCTTGTACAATGAAAGGTG 57.146 40.909 14.26 0.00 42.13 4.00
49 50 3.832527 AGCCTTGTACAATGAAAGGTGT 58.167 40.909 14.26 0.00 42.13 4.16
50 51 4.215109 AGCCTTGTACAATGAAAGGTGTT 58.785 39.130 14.26 0.00 42.13 3.32
51 52 4.278419 AGCCTTGTACAATGAAAGGTGTTC 59.722 41.667 14.26 0.00 42.13 3.18
52 53 4.037446 GCCTTGTACAATGAAAGGTGTTCA 59.963 41.667 14.26 0.00 42.13 3.18
53 54 5.762045 CCTTGTACAATGAAAGGTGTTCAG 58.238 41.667 9.13 0.00 36.50 3.02
54 55 5.278463 CCTTGTACAATGAAAGGTGTTCAGG 60.278 44.000 9.13 0.00 36.50 3.86
55 56 4.141287 TGTACAATGAAAGGTGTTCAGGG 58.859 43.478 0.00 0.00 0.00 4.45
56 57 3.593442 ACAATGAAAGGTGTTCAGGGA 57.407 42.857 0.00 0.00 0.00 4.20
57 58 3.490348 ACAATGAAAGGTGTTCAGGGAG 58.510 45.455 0.00 0.00 0.00 4.30
58 59 3.138283 ACAATGAAAGGTGTTCAGGGAGA 59.862 43.478 0.00 0.00 0.00 3.71
59 60 4.202609 ACAATGAAAGGTGTTCAGGGAGAT 60.203 41.667 0.00 0.00 0.00 2.75
60 61 3.423539 TGAAAGGTGTTCAGGGAGATG 57.576 47.619 0.00 0.00 0.00 2.90
61 62 2.087646 GAAAGGTGTTCAGGGAGATGC 58.912 52.381 0.00 0.00 0.00 3.91
62 63 1.366319 AAGGTGTTCAGGGAGATGCT 58.634 50.000 0.00 0.00 0.00 3.79
63 64 1.366319 AGGTGTTCAGGGAGATGCTT 58.634 50.000 0.00 0.00 0.00 3.91
64 65 2.551270 AGGTGTTCAGGGAGATGCTTA 58.449 47.619 0.00 0.00 0.00 3.09
65 66 2.503356 AGGTGTTCAGGGAGATGCTTAG 59.497 50.000 0.00 0.00 0.00 2.18
66 67 2.237392 GGTGTTCAGGGAGATGCTTAGT 59.763 50.000 0.00 0.00 0.00 2.24
67 68 3.451178 GGTGTTCAGGGAGATGCTTAGTA 59.549 47.826 0.00 0.00 0.00 1.82
68 69 4.081087 GGTGTTCAGGGAGATGCTTAGTAA 60.081 45.833 0.00 0.00 0.00 2.24
69 70 5.488341 GTGTTCAGGGAGATGCTTAGTAAA 58.512 41.667 0.00 0.00 0.00 2.01
70 71 5.938125 GTGTTCAGGGAGATGCTTAGTAAAA 59.062 40.000 0.00 0.00 0.00 1.52
71 72 6.430000 GTGTTCAGGGAGATGCTTAGTAAAAA 59.570 38.462 0.00 0.00 0.00 1.94
104 105 9.817809 TTAAGCACCAGTGTTATTCTATAGAAG 57.182 33.333 19.51 6.89 37.48 2.85
105 106 6.821388 AGCACCAGTGTTATTCTATAGAAGG 58.179 40.000 19.51 15.00 37.48 3.46
106 107 5.992217 GCACCAGTGTTATTCTATAGAAGGG 59.008 44.000 19.51 13.34 37.48 3.95
107 108 6.525629 CACCAGTGTTATTCTATAGAAGGGG 58.474 44.000 19.51 11.07 37.48 4.79
108 109 6.099845 CACCAGTGTTATTCTATAGAAGGGGT 59.900 42.308 19.51 14.41 37.48 4.95
109 110 6.099845 ACCAGTGTTATTCTATAGAAGGGGTG 59.900 42.308 19.51 11.61 37.48 4.61
110 111 5.992217 CAGTGTTATTCTATAGAAGGGGTGC 59.008 44.000 19.51 8.83 37.48 5.01
111 112 5.071923 AGTGTTATTCTATAGAAGGGGTGCC 59.928 44.000 19.51 5.56 37.48 5.01
112 113 5.071923 GTGTTATTCTATAGAAGGGGTGCCT 59.928 44.000 19.51 4.10 37.48 4.75
113 114 6.269307 GTGTTATTCTATAGAAGGGGTGCCTA 59.731 42.308 19.51 3.19 37.48 3.93
114 115 6.847567 TGTTATTCTATAGAAGGGGTGCCTAA 59.152 38.462 19.51 8.59 37.48 2.69
115 116 7.516209 TGTTATTCTATAGAAGGGGTGCCTAAT 59.484 37.037 19.51 2.30 37.48 1.73
116 117 8.383947 GTTATTCTATAGAAGGGGTGCCTAATT 58.616 37.037 19.51 2.12 37.48 1.40
117 118 9.624037 TTATTCTATAGAAGGGGTGCCTAATTA 57.376 33.333 19.51 1.23 37.48 1.40
118 119 7.941053 TTCTATAGAAGGGGTGCCTAATTAA 57.059 36.000 11.24 0.00 0.00 1.40
119 120 7.941053 TCTATAGAAGGGGTGCCTAATTAAA 57.059 36.000 0.00 0.00 0.00 1.52
120 121 7.742767 TCTATAGAAGGGGTGCCTAATTAAAC 58.257 38.462 0.00 0.00 0.00 2.01
121 122 4.668138 AGAAGGGGTGCCTAATTAAACA 57.332 40.909 0.00 0.00 0.00 2.83
122 123 5.206905 AGAAGGGGTGCCTAATTAAACAT 57.793 39.130 0.00 0.00 0.00 2.71
123 124 5.201243 AGAAGGGGTGCCTAATTAAACATC 58.799 41.667 0.00 0.00 0.00 3.06
124 125 4.881157 AGGGGTGCCTAATTAAACATCT 57.119 40.909 0.00 0.00 0.00 2.90
125 126 5.987019 AGGGGTGCCTAATTAAACATCTA 57.013 39.130 0.00 0.00 0.00 1.98
126 127 6.335781 AGGGGTGCCTAATTAAACATCTAA 57.664 37.500 0.00 0.00 0.00 2.10
127 128 6.737608 AGGGGTGCCTAATTAAACATCTAAA 58.262 36.000 0.00 0.00 0.00 1.85
128 129 6.605995 AGGGGTGCCTAATTAAACATCTAAAC 59.394 38.462 0.00 0.00 0.00 2.01
129 130 6.605995 GGGGTGCCTAATTAAACATCTAAACT 59.394 38.462 0.00 0.00 0.00 2.66
130 131 7.201794 GGGGTGCCTAATTAAACATCTAAACTC 60.202 40.741 0.00 0.00 0.00 3.01
131 132 7.556635 GGGTGCCTAATTAAACATCTAAACTCT 59.443 37.037 0.00 0.00 0.00 3.24
132 133 9.609346 GGTGCCTAATTAAACATCTAAACTCTA 57.391 33.333 0.00 0.00 0.00 2.43
145 146 9.890629 ACATCTAAACTCTACAAATAAGCATCA 57.109 29.630 0.00 0.00 0.00 3.07
148 149 9.371136 TCTAAACTCTACAAATAAGCATCACTG 57.629 33.333 0.00 0.00 0.00 3.66
149 150 7.986085 AAACTCTACAAATAAGCATCACTGT 57.014 32.000 0.00 0.00 0.00 3.55
150 151 7.986085 AACTCTACAAATAAGCATCACTGTT 57.014 32.000 0.00 0.00 0.00 3.16
151 152 7.986085 ACTCTACAAATAAGCATCACTGTTT 57.014 32.000 0.00 0.00 0.00 2.83
152 153 9.502091 AACTCTACAAATAAGCATCACTGTTTA 57.498 29.630 0.00 0.00 33.36 2.01
153 154 9.502091 ACTCTACAAATAAGCATCACTGTTTAA 57.498 29.630 0.00 0.00 32.70 1.52
194 195 8.654485 TTTCTCTAAGTACCTTACCATGTACA 57.346 34.615 0.00 0.00 39.79 2.90
195 196 8.654485 TTCTCTAAGTACCTTACCATGTACAA 57.346 34.615 0.00 0.00 39.79 2.41
196 197 8.289939 TCTCTAAGTACCTTACCATGTACAAG 57.710 38.462 0.00 0.00 39.79 3.16
197 198 7.892241 TCTCTAAGTACCTTACCATGTACAAGT 59.108 37.037 0.00 3.17 39.79 3.16
198 199 8.059798 TCTAAGTACCTTACCATGTACAAGTC 57.940 38.462 0.00 0.00 39.79 3.01
199 200 5.672421 AGTACCTTACCATGTACAAGTCC 57.328 43.478 0.00 0.00 39.79 3.85
200 201 5.339477 AGTACCTTACCATGTACAAGTCCT 58.661 41.667 0.00 0.00 39.79 3.85
201 202 5.783875 AGTACCTTACCATGTACAAGTCCTT 59.216 40.000 0.00 0.00 39.79 3.36
202 203 6.955851 AGTACCTTACCATGTACAAGTCCTTA 59.044 38.462 0.00 0.00 39.79 2.69
203 204 6.046290 ACCTTACCATGTACAAGTCCTTAC 57.954 41.667 0.00 0.00 0.00 2.34
204 205 5.544948 ACCTTACCATGTACAAGTCCTTACA 59.455 40.000 0.00 0.00 32.83 2.41
205 206 6.043474 ACCTTACCATGTACAAGTCCTTACAA 59.957 38.462 0.00 0.00 32.07 2.41
206 207 6.594159 CCTTACCATGTACAAGTCCTTACAAG 59.406 42.308 0.00 0.68 32.07 3.16
207 208 5.818678 ACCATGTACAAGTCCTTACAAGA 57.181 39.130 0.00 0.00 32.07 3.02
208 209 6.374417 ACCATGTACAAGTCCTTACAAGAT 57.626 37.500 0.00 0.00 32.07 2.40
209 210 6.779860 ACCATGTACAAGTCCTTACAAGATT 58.220 36.000 0.00 0.00 32.07 2.40
210 211 6.655003 ACCATGTACAAGTCCTTACAAGATTG 59.345 38.462 0.00 0.00 32.07 2.67
211 212 6.878923 CCATGTACAAGTCCTTACAAGATTGA 59.121 38.462 0.00 0.00 32.07 2.57
212 213 7.390440 CCATGTACAAGTCCTTACAAGATTGAA 59.610 37.037 0.00 0.00 32.07 2.69
213 214 8.783093 CATGTACAAGTCCTTACAAGATTGAAA 58.217 33.333 0.00 0.00 32.07 2.69
214 215 8.149973 TGTACAAGTCCTTACAAGATTGAAAC 57.850 34.615 0.00 6.65 0.00 2.78
215 216 6.300354 ACAAGTCCTTACAAGATTGAAACG 57.700 37.500 0.00 0.00 0.00 3.60
216 217 6.053005 ACAAGTCCTTACAAGATTGAAACGA 58.947 36.000 0.00 0.00 0.00 3.85
217 218 6.018180 ACAAGTCCTTACAAGATTGAAACGAC 60.018 38.462 0.00 0.63 0.00 4.34
218 219 4.995487 AGTCCTTACAAGATTGAAACGACC 59.005 41.667 0.00 0.00 0.00 4.79
219 220 4.753107 GTCCTTACAAGATTGAAACGACCA 59.247 41.667 0.00 0.00 0.00 4.02
220 221 5.237779 GTCCTTACAAGATTGAAACGACCAA 59.762 40.000 0.00 0.00 0.00 3.67
221 222 5.823570 TCCTTACAAGATTGAAACGACCAAA 59.176 36.000 0.00 0.00 0.00 3.28
222 223 6.319152 TCCTTACAAGATTGAAACGACCAAAA 59.681 34.615 0.00 0.00 0.00 2.44
223 224 6.975772 CCTTACAAGATTGAAACGACCAAAAA 59.024 34.615 0.00 0.00 0.00 1.94
224 225 7.167468 CCTTACAAGATTGAAACGACCAAAAAG 59.833 37.037 0.00 0.00 0.00 2.27
225 226 4.803613 ACAAGATTGAAACGACCAAAAAGC 59.196 37.500 0.00 0.00 0.00 3.51
226 227 4.647424 AGATTGAAACGACCAAAAAGCA 57.353 36.364 0.00 0.00 0.00 3.91
227 228 5.004922 AGATTGAAACGACCAAAAAGCAA 57.995 34.783 0.00 0.00 0.00 3.91
228 229 5.415221 AGATTGAAACGACCAAAAAGCAAA 58.585 33.333 0.00 0.00 0.00 3.68
229 230 5.872070 AGATTGAAACGACCAAAAAGCAAAA 59.128 32.000 0.00 0.00 0.00 2.44
230 231 5.523013 TTGAAACGACCAAAAAGCAAAAG 57.477 34.783 0.00 0.00 0.00 2.27
231 232 3.929610 TGAAACGACCAAAAAGCAAAAGG 59.070 39.130 0.00 0.00 0.00 3.11
232 233 1.934589 ACGACCAAAAAGCAAAAGGC 58.065 45.000 0.00 0.00 45.30 4.35
233 234 1.217001 CGACCAAAAAGCAAAAGGCC 58.783 50.000 0.00 0.00 46.50 5.19
234 235 1.472376 CGACCAAAAAGCAAAAGGCCA 60.472 47.619 5.01 0.00 46.50 5.36
235 236 2.637947 GACCAAAAAGCAAAAGGCCAA 58.362 42.857 5.01 0.00 46.50 4.52
236 237 2.354510 GACCAAAAAGCAAAAGGCCAAC 59.645 45.455 5.01 0.00 46.50 3.77
237 238 1.330213 CCAAAAAGCAAAAGGCCAACG 59.670 47.619 5.01 0.00 46.50 4.10
238 239 1.330213 CAAAAAGCAAAAGGCCAACGG 59.670 47.619 5.01 0.00 46.50 4.44
239 240 0.827368 AAAAGCAAAAGGCCAACGGA 59.173 45.000 5.01 0.00 46.50 4.69
240 241 0.389025 AAAGCAAAAGGCCAACGGAG 59.611 50.000 5.01 0.00 46.50 4.63
241 242 0.467290 AAGCAAAAGGCCAACGGAGA 60.467 50.000 5.01 0.00 46.50 3.71
242 243 0.890996 AGCAAAAGGCCAACGGAGAG 60.891 55.000 5.01 0.00 46.50 3.20
243 244 1.581447 CAAAAGGCCAACGGAGAGC 59.419 57.895 5.01 0.00 0.00 4.09
260 261 5.870444 GGAGAGCCGAAAGAAAATAGAAAC 58.130 41.667 0.00 0.00 0.00 2.78
261 262 5.644206 GGAGAGCCGAAAGAAAATAGAAACT 59.356 40.000 0.00 0.00 0.00 2.66
262 263 6.402658 GGAGAGCCGAAAGAAAATAGAAACTG 60.403 42.308 0.00 0.00 0.00 3.16
263 264 5.048153 AGCCGAAAGAAAATAGAAACTGC 57.952 39.130 0.00 0.00 0.00 4.40
264 265 4.762251 AGCCGAAAGAAAATAGAAACTGCT 59.238 37.500 0.00 0.00 0.00 4.24
265 266 5.089411 GCCGAAAGAAAATAGAAACTGCTC 58.911 41.667 0.00 0.00 0.00 4.26
266 267 5.316770 CCGAAAGAAAATAGAAACTGCTCG 58.683 41.667 0.00 0.00 0.00 5.03
267 268 4.783540 CGAAAGAAAATAGAAACTGCTCGC 59.216 41.667 0.00 0.00 0.00 5.03
268 269 5.614668 CGAAAGAAAATAGAAACTGCTCGCA 60.615 40.000 0.00 0.00 0.00 5.10
270 271 4.569943 AGAAAATAGAAACTGCTCGCAGA 58.430 39.130 24.30 2.89 46.30 4.26
282 283 3.036431 TCGCAGAGAACTGGTCAGA 57.964 52.632 4.84 0.00 43.62 3.27
283 284 1.328279 TCGCAGAGAACTGGTCAGAA 58.672 50.000 4.84 0.00 43.62 3.02
284 285 1.270826 TCGCAGAGAACTGGTCAGAAG 59.729 52.381 4.84 0.00 43.62 2.85
285 286 1.270826 CGCAGAGAACTGGTCAGAAGA 59.729 52.381 4.84 0.00 43.62 2.87
286 287 2.094286 CGCAGAGAACTGGTCAGAAGAT 60.094 50.000 4.84 0.00 43.62 2.40
287 288 3.520569 GCAGAGAACTGGTCAGAAGATC 58.479 50.000 4.84 0.00 43.62 2.75
288 289 3.056250 GCAGAGAACTGGTCAGAAGATCA 60.056 47.826 4.84 0.00 43.62 2.92
289 290 4.493547 CAGAGAACTGGTCAGAAGATCAC 58.506 47.826 4.84 0.00 40.14 3.06
290 291 4.220382 CAGAGAACTGGTCAGAAGATCACT 59.780 45.833 4.84 0.00 40.14 3.41
291 292 4.837860 AGAGAACTGGTCAGAAGATCACTT 59.162 41.667 4.84 0.00 39.24 3.16
292 293 4.892433 AGAACTGGTCAGAAGATCACTTG 58.108 43.478 4.84 0.00 36.39 3.16
293 294 4.346418 AGAACTGGTCAGAAGATCACTTGT 59.654 41.667 4.84 0.00 36.39 3.16
294 295 5.540337 AGAACTGGTCAGAAGATCACTTGTA 59.460 40.000 4.84 0.00 36.39 2.41
295 296 5.808366 ACTGGTCAGAAGATCACTTGTAA 57.192 39.130 4.84 0.00 36.39 2.41
296 297 6.174720 ACTGGTCAGAAGATCACTTGTAAA 57.825 37.500 4.84 0.00 36.39 2.01
297 298 6.591935 ACTGGTCAGAAGATCACTTGTAAAA 58.408 36.000 4.84 0.00 36.39 1.52
298 299 6.483640 ACTGGTCAGAAGATCACTTGTAAAAC 59.516 38.462 4.84 0.00 36.39 2.43
299 300 5.465390 TGGTCAGAAGATCACTTGTAAAACG 59.535 40.000 0.00 0.00 36.39 3.60
300 301 5.694910 GGTCAGAAGATCACTTGTAAAACGA 59.305 40.000 0.00 0.00 36.39 3.85
301 302 6.202188 GGTCAGAAGATCACTTGTAAAACGAA 59.798 38.462 0.00 0.00 36.39 3.85
302 303 7.254658 GGTCAGAAGATCACTTGTAAAACGAAA 60.255 37.037 0.00 0.00 36.39 3.46
303 304 8.120465 GTCAGAAGATCACTTGTAAAACGAAAA 58.880 33.333 0.00 0.00 36.39 2.29
304 305 8.836413 TCAGAAGATCACTTGTAAAACGAAAAT 58.164 29.630 0.00 0.00 36.39 1.82
307 308 9.872757 GAAGATCACTTGTAAAACGAAAATACA 57.127 29.630 0.00 0.00 36.39 2.29
312 313 9.279904 TCACTTGTAAAACGAAAATACAAACTG 57.720 29.630 0.00 0.00 38.61 3.16
313 314 9.068008 CACTTGTAAAACGAAAATACAAACTGT 57.932 29.630 0.00 0.00 38.61 3.55
314 315 9.628746 ACTTGTAAAACGAAAATACAAACTGTT 57.371 25.926 0.00 0.00 38.61 3.16
317 318 9.224058 TGTAAAACGAAAATACAAACTGTTAGC 57.776 29.630 0.00 0.00 0.00 3.09
318 319 6.963017 AAACGAAAATACAAACTGTTAGCG 57.037 33.333 0.00 0.00 0.00 4.26
319 320 5.910637 ACGAAAATACAAACTGTTAGCGA 57.089 34.783 0.00 0.00 0.00 4.93
320 321 6.289745 ACGAAAATACAAACTGTTAGCGAA 57.710 33.333 0.00 0.00 0.00 4.70
321 322 6.360329 ACGAAAATACAAACTGTTAGCGAAG 58.640 36.000 0.00 0.00 0.00 3.79
322 323 6.201425 ACGAAAATACAAACTGTTAGCGAAGA 59.799 34.615 0.00 0.00 0.00 2.87
323 324 7.067116 CGAAAATACAAACTGTTAGCGAAGAA 58.933 34.615 0.00 0.00 0.00 2.52
324 325 7.058016 CGAAAATACAAACTGTTAGCGAAGAAC 59.942 37.037 0.00 0.00 0.00 3.01
325 326 7.492352 AAATACAAACTGTTAGCGAAGAACT 57.508 32.000 0.00 0.00 0.00 3.01
326 327 7.492352 AATACAAACTGTTAGCGAAGAACTT 57.508 32.000 0.00 0.00 0.00 2.66
327 328 5.156804 ACAAACTGTTAGCGAAGAACTTG 57.843 39.130 0.00 0.00 0.00 3.16
328 329 4.634443 ACAAACTGTTAGCGAAGAACTTGT 59.366 37.500 0.00 0.00 0.00 3.16
329 330 4.795970 AACTGTTAGCGAAGAACTTGTG 57.204 40.909 0.00 0.00 0.00 3.33
330 331 4.054780 ACTGTTAGCGAAGAACTTGTGA 57.945 40.909 0.00 0.00 0.00 3.58
331 332 4.632153 ACTGTTAGCGAAGAACTTGTGAT 58.368 39.130 0.00 0.00 0.00 3.06
332 333 5.779922 ACTGTTAGCGAAGAACTTGTGATA 58.220 37.500 0.00 0.00 0.00 2.15
333 334 6.220930 ACTGTTAGCGAAGAACTTGTGATAA 58.779 36.000 0.00 0.00 0.00 1.75
334 335 6.704493 ACTGTTAGCGAAGAACTTGTGATAAA 59.296 34.615 0.00 0.00 0.00 1.40
335 336 7.387948 ACTGTTAGCGAAGAACTTGTGATAAAT 59.612 33.333 0.00 0.00 0.00 1.40
336 337 8.094798 TGTTAGCGAAGAACTTGTGATAAATT 57.905 30.769 0.00 0.00 0.00 1.82
337 338 8.564574 TGTTAGCGAAGAACTTGTGATAAATTT 58.435 29.630 0.00 0.00 0.00 1.82
338 339 8.840867 GTTAGCGAAGAACTTGTGATAAATTTG 58.159 33.333 0.00 0.00 0.00 2.32
339 340 7.202016 AGCGAAGAACTTGTGATAAATTTGA 57.798 32.000 0.00 0.00 0.00 2.69
340 341 7.301054 AGCGAAGAACTTGTGATAAATTTGAG 58.699 34.615 0.00 0.00 0.00 3.02
341 342 7.173218 AGCGAAGAACTTGTGATAAATTTGAGA 59.827 33.333 0.00 0.00 0.00 3.27
342 343 7.269297 GCGAAGAACTTGTGATAAATTTGAGAC 59.731 37.037 0.00 0.00 0.00 3.36
343 344 8.499162 CGAAGAACTTGTGATAAATTTGAGACT 58.501 33.333 0.00 0.00 0.00 3.24
344 345 9.604626 GAAGAACTTGTGATAAATTTGAGACTG 57.395 33.333 0.00 0.00 0.00 3.51
345 346 7.588512 AGAACTTGTGATAAATTTGAGACTGC 58.411 34.615 0.00 0.00 0.00 4.40
346 347 6.882610 ACTTGTGATAAATTTGAGACTGCA 57.117 33.333 0.00 0.00 0.00 4.41
347 348 7.458409 ACTTGTGATAAATTTGAGACTGCAT 57.542 32.000 0.00 0.00 0.00 3.96
348 349 8.565896 ACTTGTGATAAATTTGAGACTGCATA 57.434 30.769 0.00 0.00 0.00 3.14
349 350 9.182214 ACTTGTGATAAATTTGAGACTGCATAT 57.818 29.630 0.00 0.00 0.00 1.78
362 363 9.677567 TTGAGACTGCATATTTAAAAGTCAAAC 57.322 29.630 15.78 9.28 39.77 2.93
363 364 9.066892 TGAGACTGCATATTTAAAAGTCAAACT 57.933 29.630 15.78 0.04 39.77 2.66
364 365 9.334693 GAGACTGCATATTTAAAAGTCAAACTG 57.665 33.333 15.78 1.18 39.77 3.16
365 366 8.299570 AGACTGCATATTTAAAAGTCAAACTGG 58.700 33.333 15.78 0.00 39.77 4.00
366 367 7.951591 ACTGCATATTTAAAAGTCAAACTGGT 58.048 30.769 0.00 0.00 0.00 4.00
367 368 8.421002 ACTGCATATTTAAAAGTCAAACTGGTT 58.579 29.630 0.00 0.00 0.00 3.67
368 369 8.586570 TGCATATTTAAAAGTCAAACTGGTTG 57.413 30.769 0.00 0.00 38.71 3.77
369 370 7.655328 TGCATATTTAAAAGTCAAACTGGTTGG 59.345 33.333 5.47 0.00 37.85 3.77
370 371 7.655732 GCATATTTAAAAGTCAAACTGGTTGGT 59.344 33.333 5.47 0.00 37.85 3.67
371 372 9.541143 CATATTTAAAAGTCAAACTGGTTGGTT 57.459 29.630 5.47 0.00 37.85 3.67
378 379 2.539476 CAAACTGGTTGGTTTGTCAGC 58.461 47.619 10.69 0.00 46.17 4.26
379 380 1.846007 AACTGGTTGGTTTGTCAGCA 58.154 45.000 0.00 0.00 0.00 4.41
380 381 2.071778 ACTGGTTGGTTTGTCAGCAT 57.928 45.000 0.00 0.00 31.27 3.79
381 382 2.387757 ACTGGTTGGTTTGTCAGCATT 58.612 42.857 0.00 0.00 31.27 3.56
382 383 2.765699 ACTGGTTGGTTTGTCAGCATTT 59.234 40.909 0.00 0.00 31.27 2.32
383 384 3.125316 CTGGTTGGTTTGTCAGCATTTG 58.875 45.455 0.00 0.00 31.27 2.32
384 385 2.158986 TGGTTGGTTTGTCAGCATTTGG 60.159 45.455 0.00 0.00 31.27 3.28
385 386 2.102252 GGTTGGTTTGTCAGCATTTGGA 59.898 45.455 0.00 0.00 31.27 3.53
386 387 3.123050 GTTGGTTTGTCAGCATTTGGAC 58.877 45.455 0.00 0.00 31.27 4.02
387 388 2.382882 TGGTTTGTCAGCATTTGGACA 58.617 42.857 0.00 0.00 41.93 4.02
388 389 2.100584 TGGTTTGTCAGCATTTGGACAC 59.899 45.455 0.00 0.00 43.22 3.67
389 390 2.100584 GGTTTGTCAGCATTTGGACACA 59.899 45.455 0.00 0.00 43.22 3.72
390 391 3.243839 GGTTTGTCAGCATTTGGACACAT 60.244 43.478 0.00 0.00 43.22 3.21
391 392 4.022416 GGTTTGTCAGCATTTGGACACATA 60.022 41.667 0.00 0.00 43.22 2.29
392 393 5.508825 GGTTTGTCAGCATTTGGACACATAA 60.509 40.000 0.00 0.00 43.22 1.90
393 394 4.764679 TGTCAGCATTTGGACACATAAC 57.235 40.909 0.00 0.00 39.00 1.89
394 395 4.140536 TGTCAGCATTTGGACACATAACA 58.859 39.130 0.00 0.00 39.00 2.41
395 396 4.582240 TGTCAGCATTTGGACACATAACAA 59.418 37.500 0.00 0.00 39.00 2.83
396 397 4.917415 GTCAGCATTTGGACACATAACAAC 59.083 41.667 0.00 0.00 34.22 3.32
397 398 4.826733 TCAGCATTTGGACACATAACAACT 59.173 37.500 0.00 0.00 0.00 3.16
398 399 5.301551 TCAGCATTTGGACACATAACAACTT 59.698 36.000 0.00 0.00 0.00 2.66
399 400 5.403166 CAGCATTTGGACACATAACAACTTG 59.597 40.000 0.00 0.00 0.00 3.16
400 401 4.150451 GCATTTGGACACATAACAACTTGC 59.850 41.667 0.00 0.00 0.00 4.01
401 402 4.314740 TTTGGACACATAACAACTTGCC 57.685 40.909 0.00 0.00 0.00 4.52
402 403 1.876799 TGGACACATAACAACTTGCCG 59.123 47.619 0.00 0.00 0.00 5.69
403 404 1.401018 GGACACATAACAACTTGCCGC 60.401 52.381 0.00 0.00 0.00 6.53
404 405 0.596082 ACACATAACAACTTGCCGCC 59.404 50.000 0.00 0.00 0.00 6.13
405 406 0.881118 CACATAACAACTTGCCGCCT 59.119 50.000 0.00 0.00 0.00 5.52
406 407 1.269448 CACATAACAACTTGCCGCCTT 59.731 47.619 0.00 0.00 0.00 4.35
407 408 2.486203 CACATAACAACTTGCCGCCTTA 59.514 45.455 0.00 0.00 0.00 2.69
408 409 3.057876 CACATAACAACTTGCCGCCTTAA 60.058 43.478 0.00 0.00 0.00 1.85
409 410 3.761752 ACATAACAACTTGCCGCCTTAAT 59.238 39.130 0.00 0.00 0.00 1.40
420 421 1.577468 CGCCTTAATATGACGCCACA 58.423 50.000 0.00 0.00 0.00 4.17
425 426 4.668289 CCTTAATATGACGCCACAAAACC 58.332 43.478 0.00 0.00 0.00 3.27
428 429 2.552599 TATGACGCCACAAAACCTCA 57.447 45.000 0.00 0.00 0.00 3.86
451 452 1.000145 GTCGCTAACAGGCTAGCAAC 59.000 55.000 18.24 0.00 43.84 4.17
452 453 0.895530 TCGCTAACAGGCTAGCAACT 59.104 50.000 18.24 1.83 43.84 3.16
453 454 1.275291 TCGCTAACAGGCTAGCAACTT 59.725 47.619 18.24 6.16 43.84 2.66
457 458 3.372514 GCTAACAGGCTAGCAACTTCTTC 59.627 47.826 18.24 0.00 43.25 2.87
473 474 7.176865 GCAACTTCTTCTAAATAAGTTTCCCCT 59.823 37.037 0.00 0.00 40.52 4.79
474 475 9.078990 CAACTTCTTCTAAATAAGTTTCCCCTT 57.921 33.333 0.00 0.00 40.52 3.95
476 477 9.736414 ACTTCTTCTAAATAAGTTTCCCCTTAC 57.264 33.333 0.00 0.00 29.25 2.34
477 478 9.175312 CTTCTTCTAAATAAGTTTCCCCTTACC 57.825 37.037 0.00 0.00 30.11 2.85
478 479 8.222138 TCTTCTAAATAAGTTTCCCCTTACCA 57.778 34.615 0.00 0.00 30.11 3.25
482 483 9.831682 TCTAAATAAGTTTCCCCTTACCATTTT 57.168 29.630 0.00 0.00 30.11 1.82
503 504 4.747540 TCAATCAAACGAACACAGGATG 57.252 40.909 0.00 0.00 46.00 3.51
531 532 9.613428 ATTCAACTGCAGCAATACTACTTAATA 57.387 29.630 15.27 0.00 0.00 0.98
532 533 8.420374 TCAACTGCAGCAATACTACTTAATAC 57.580 34.615 15.27 0.00 0.00 1.89
538 539 7.065324 TGCAGCAATACTACTTAATACAACACC 59.935 37.037 0.00 0.00 0.00 4.16
546 547 5.607119 ACTTAATACAACACCGAAGCAAG 57.393 39.130 0.00 0.00 0.00 4.01
569 570 0.672401 TTGCCCGAAATGTCCTCGTC 60.672 55.000 0.00 0.00 34.46 4.20
642 643 0.528684 GAGGTGATGGCGAGCACTAC 60.529 60.000 16.71 7.55 38.61 2.73
678 679 2.815647 CAGGCCCGTCGAAGAAGC 60.816 66.667 0.00 2.28 39.69 3.86
738 739 2.089980 CTCTGCCAAGAACCATTCCTG 58.910 52.381 0.00 0.00 30.03 3.86
786 793 4.556233 AGTCAAATCATTCAGACGTCGAA 58.444 39.130 19.74 19.74 36.18 3.71
804 811 3.267860 CGAGCTGGCAGAATCCGC 61.268 66.667 20.86 1.61 0.00 5.54
865 872 2.352805 GCACCAGAACCTCCCCTG 59.647 66.667 0.00 0.00 0.00 4.45
867 874 1.376466 CACCAGAACCTCCCCTGTG 59.624 63.158 0.00 0.00 0.00 3.66
885 892 3.701241 TGTGCGAACTGGAAATGAAAAC 58.299 40.909 0.00 0.00 0.00 2.43
890 897 4.702392 CGAACTGGAAATGAAAACTCTCG 58.298 43.478 0.00 0.00 0.00 4.04
940 948 3.034635 GCCCTCTGAATTCTCTACCAGA 58.965 50.000 7.05 0.00 34.81 3.86
943 951 4.283212 CCCTCTGAATTCTCTACCAGATCC 59.717 50.000 7.05 0.00 35.42 3.36
963 971 3.598562 GTCGTCGATCGCACGCAG 61.599 66.667 25.12 9.15 39.67 5.18
1015 1027 1.476007 GGAGATGGGGAGGTCGATGG 61.476 65.000 0.00 0.00 0.00 3.51
1188 1200 2.363788 TCTCAGGTAACACACATCGC 57.636 50.000 0.00 0.00 41.41 4.58
1195 1210 2.604914 GGTAACACACATCGCATCTCTG 59.395 50.000 0.00 0.00 0.00 3.35
1226 1241 8.819974 ACTTTTTACATGTCAAAATGCTCTTTG 58.180 29.630 16.19 6.79 37.59 2.77
1237 1312 0.670162 TGCTCTTTGGCTTGCTGAAC 59.330 50.000 0.00 0.00 0.00 3.18
1279 1354 1.531423 ATCCCGATGATCATTGCTGC 58.469 50.000 16.49 0.00 0.00 5.25
1411 1486 2.483877 CACCACCTACTACGTACGTCAA 59.516 50.000 26.53 7.54 0.00 3.18
1428 1543 3.668191 CGTCAACACATTGTTTGCCATAC 59.332 43.478 0.00 0.00 38.77 2.39
1429 1544 4.615949 GTCAACACATTGTTTGCCATACA 58.384 39.130 0.00 0.00 38.77 2.29
1430 1545 5.229423 GTCAACACATTGTTTGCCATACAT 58.771 37.500 0.00 0.00 38.77 2.29
1432 1547 7.035004 GTCAACACATTGTTTGCCATACATAT 58.965 34.615 0.00 0.00 38.77 1.78
1444 1559 4.213906 TGCCATACATATGCACATTTCTCG 59.786 41.667 1.58 0.00 32.40 4.04
1457 1572 3.588057 TTCTCGTCAGGCGCATGCA 62.588 57.895 18.83 3.42 45.35 3.96
1726 1846 2.131067 CAGCCCATGCATGCATCCA 61.131 57.895 30.07 3.65 41.13 3.41
1728 1848 0.762842 AGCCCATGCATGCATCCATT 60.763 50.000 30.07 13.56 41.13 3.16
1729 1849 0.602638 GCCCATGCATGCATCCATTG 60.603 55.000 30.07 19.66 37.47 2.82
1730 1850 0.756294 CCCATGCATGCATCCATTGT 59.244 50.000 30.07 5.99 33.90 2.71
1731 1851 1.964933 CCCATGCATGCATCCATTGTA 59.035 47.619 30.07 0.00 33.90 2.41
1732 1852 2.288579 CCCATGCATGCATCCATTGTAC 60.289 50.000 30.07 0.00 33.90 2.90
1733 1853 2.626266 CCATGCATGCATCCATTGTACT 59.374 45.455 30.07 3.48 33.90 2.73
1734 1854 3.305131 CCATGCATGCATCCATTGTACTC 60.305 47.826 30.07 0.00 33.90 2.59
1735 1855 2.300433 TGCATGCATCCATTGTACTCC 58.700 47.619 18.46 0.00 0.00 3.85
1736 1856 2.092267 TGCATGCATCCATTGTACTCCT 60.092 45.455 18.46 0.00 0.00 3.69
1743 1863 3.474798 TCCATTGTACTCCTCCTCTGT 57.525 47.619 0.00 0.00 0.00 3.41
1754 1874 2.501723 TCCTCCTCTGTTGCCTGATTAC 59.498 50.000 0.00 0.00 0.00 1.89
1759 1879 3.011818 CTCTGTTGCCTGATTACATGCA 58.988 45.455 0.00 0.00 43.57 3.96
1760 1880 3.011818 TCTGTTGCCTGATTACATGCAG 58.988 45.455 0.00 0.00 45.19 4.41
1761 1881 3.011818 CTGTTGCCTGATTACATGCAGA 58.988 45.455 0.00 0.00 45.19 4.26
1794 1914 1.576356 GCTGACTTCCATGGATCGAC 58.424 55.000 17.06 10.77 0.00 4.20
1798 1918 2.428530 TGACTTCCATGGATCGACTCTG 59.571 50.000 17.06 1.63 0.00 3.35
1801 1921 1.852633 TCCATGGATCGACTCTGTGT 58.147 50.000 11.44 0.00 0.00 3.72
1803 1923 1.205655 CCATGGATCGACTCTGTGTGT 59.794 52.381 5.56 0.00 0.00 3.72
1804 1924 2.265683 CATGGATCGACTCTGTGTGTG 58.734 52.381 0.00 0.00 0.00 3.82
1805 1925 0.038251 TGGATCGACTCTGTGTGTGC 60.038 55.000 0.00 0.00 0.00 4.57
1806 1926 0.038251 GGATCGACTCTGTGTGTGCA 60.038 55.000 0.00 0.00 0.00 4.57
2009 2129 0.743345 GTACGACAACATGGGCCTCC 60.743 60.000 4.53 0.00 0.00 4.30
2048 2168 2.889988 CCGACGATGAATGCGCCA 60.890 61.111 4.18 0.00 0.00 5.69
2230 2350 9.424319 GAACAGTACTGATGAGAAAATCAAGTA 57.576 33.333 29.30 0.00 42.53 2.24
2231 2351 8.764524 ACAGTACTGATGAGAAAATCAAGTAC 57.235 34.615 29.30 10.04 42.53 2.73
2232 2352 7.542477 ACAGTACTGATGAGAAAATCAAGTACG 59.458 37.037 29.30 9.80 42.53 3.67
2249 2371 8.076714 TCAAGTACGAGTAATACACTATACGG 57.923 38.462 0.00 0.00 37.72 4.02
2291 2418 2.627699 GCACTCCTCCCATTTTGTTTCA 59.372 45.455 0.00 0.00 0.00 2.69
2300 2427 5.792741 TCCCATTTTGTTTCATTGGATGTC 58.207 37.500 0.00 0.00 0.00 3.06
2339 2466 7.062371 CGTCGAATCTCCTGATATGTTTATTCC 59.938 40.741 0.00 0.00 31.70 3.01
2345 2472 9.927081 ATCTCCTGATATGTTTATTCCTTTTGT 57.073 29.630 0.00 0.00 0.00 2.83
2346 2473 9.177608 TCTCCTGATATGTTTATTCCTTTTGTG 57.822 33.333 0.00 0.00 0.00 3.33
2382 2515 3.797256 GCGAGATTACTACGTGCATTCTT 59.203 43.478 0.00 0.00 0.00 2.52
2431 2564 7.125811 TCCTAATGGAGCAGTTAGTGAATAGTT 59.874 37.037 0.00 0.00 37.46 2.24
2432 2565 7.770897 CCTAATGGAGCAGTTAGTGAATAGTTT 59.229 37.037 0.00 0.00 34.57 2.66
2433 2566 9.167311 CTAATGGAGCAGTTAGTGAATAGTTTT 57.833 33.333 0.00 0.00 0.00 2.43
2435 2568 6.530120 TGGAGCAGTTAGTGAATAGTTTTCA 58.470 36.000 0.00 0.00 0.00 2.69
2474 2607 2.132089 TTTTTCGTCCCCGCTCCCAT 62.132 55.000 0.00 0.00 0.00 4.00
2543 2676 3.305608 GCAAAGCAGCACTTTCCTAACAT 60.306 43.478 0.00 0.00 45.78 2.71
2573 3647 7.430992 AAATCACGGACTAAACTTTCCTAAC 57.569 36.000 0.00 0.00 0.00 2.34
2647 3721 8.934507 AACAAATAACGGATTTTCTGAAAACA 57.065 26.923 17.06 0.00 35.45 2.83
2717 3795 7.414222 AACCTCATCATGAAAGCATTTATGT 57.586 32.000 0.00 0.00 39.27 2.29
2718 3796 8.523915 AACCTCATCATGAAAGCATTTATGTA 57.476 30.769 0.00 0.00 39.27 2.29
2719 3797 7.934457 ACCTCATCATGAAAGCATTTATGTAC 58.066 34.615 0.00 0.00 39.27 2.90
2720 3798 7.013655 ACCTCATCATGAAAGCATTTATGTACC 59.986 37.037 0.00 0.00 39.27 3.34
2721 3799 7.230108 CCTCATCATGAAAGCATTTATGTACCT 59.770 37.037 0.00 0.00 39.27 3.08
2722 3800 9.276590 CTCATCATGAAAGCATTTATGTACCTA 57.723 33.333 0.00 0.00 39.27 3.08
2723 3801 9.797642 TCATCATGAAAGCATTTATGTACCTAT 57.202 29.630 0.00 0.00 39.27 2.57
2754 3832 1.065358 GTGTACGGTTGTGATGGTCG 58.935 55.000 0.00 0.00 0.00 4.79
2763 3841 2.465860 TGTGATGGTCGGTTTGGTAG 57.534 50.000 0.00 0.00 0.00 3.18
2772 3850 0.671472 CGGTTTGGTAGGTCGGTTCC 60.671 60.000 0.00 0.00 0.00 3.62
2822 3900 1.026584 CGAAGCAATGCATCATCCCA 58.973 50.000 8.35 0.00 0.00 4.37
2855 3933 2.250494 AAAAAGAGCCCACCTCCCA 58.750 52.632 0.00 0.00 41.74 4.37
2911 3993 0.902048 CAGCCCCTCTCTCTCACACA 60.902 60.000 0.00 0.00 0.00 3.72
2912 3994 0.902516 AGCCCCTCTCTCTCACACAC 60.903 60.000 0.00 0.00 0.00 3.82
2913 3995 1.188219 GCCCCTCTCTCTCACACACA 61.188 60.000 0.00 0.00 0.00 3.72
2914 3996 0.605589 CCCCTCTCTCTCACACACAC 59.394 60.000 0.00 0.00 0.00 3.82
2915 3997 0.605589 CCCTCTCTCTCACACACACC 59.394 60.000 0.00 0.00 0.00 4.16
2916 3998 1.332195 CCTCTCTCTCACACACACCA 58.668 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.232188 TGACTAGTATCTTCGTCCTGGT 57.768 45.455 0.00 0.00 0.00 4.00
3 4 5.776173 AATGACTAGTATCTTCGTCCTGG 57.224 43.478 0.00 0.00 0.00 4.45
4 5 7.380065 GCTTAAATGACTAGTATCTTCGTCCTG 59.620 40.741 0.00 0.00 0.00 3.86
5 6 7.427214 GCTTAAATGACTAGTATCTTCGTCCT 58.573 38.462 0.00 0.00 0.00 3.85
6 7 6.641723 GGCTTAAATGACTAGTATCTTCGTCC 59.358 42.308 0.00 0.00 0.00 4.79
7 8 7.427214 AGGCTTAAATGACTAGTATCTTCGTC 58.573 38.462 0.00 0.00 0.00 4.20
8 9 7.349412 AGGCTTAAATGACTAGTATCTTCGT 57.651 36.000 0.00 0.00 0.00 3.85
9 10 7.707035 ACAAGGCTTAAATGACTAGTATCTTCG 59.293 37.037 0.00 0.00 0.00 3.79
10 11 8.950208 ACAAGGCTTAAATGACTAGTATCTTC 57.050 34.615 0.00 0.00 0.00 2.87
11 12 9.819267 GTACAAGGCTTAAATGACTAGTATCTT 57.181 33.333 0.00 0.00 0.00 2.40
12 13 8.978472 TGTACAAGGCTTAAATGACTAGTATCT 58.022 33.333 0.00 0.00 0.00 1.98
13 14 9.595823 TTGTACAAGGCTTAAATGACTAGTATC 57.404 33.333 3.59 0.00 0.00 2.24
15 16 9.378551 CATTGTACAAGGCTTAAATGACTAGTA 57.621 33.333 14.65 2.49 0.00 1.82
16 17 8.100791 TCATTGTACAAGGCTTAAATGACTAGT 58.899 33.333 15.24 0.00 31.08 2.57
17 18 8.492673 TCATTGTACAAGGCTTAAATGACTAG 57.507 34.615 15.24 0.00 31.08 2.57
18 19 8.856153 TTCATTGTACAAGGCTTAAATGACTA 57.144 30.769 15.24 8.92 34.66 2.59
19 20 7.759489 TTCATTGTACAAGGCTTAAATGACT 57.241 32.000 15.24 0.00 34.66 3.41
20 21 7.542130 CCTTTCATTGTACAAGGCTTAAATGAC 59.458 37.037 15.24 7.41 34.66 3.06
21 22 7.232534 ACCTTTCATTGTACAAGGCTTAAATGA 59.767 33.333 15.24 16.46 40.85 2.57
22 23 7.329226 CACCTTTCATTGTACAAGGCTTAAATG 59.671 37.037 15.24 10.02 40.85 2.32
23 24 7.015195 ACACCTTTCATTGTACAAGGCTTAAAT 59.985 33.333 15.24 0.00 40.85 1.40
24 25 6.322712 ACACCTTTCATTGTACAAGGCTTAAA 59.677 34.615 15.24 9.79 40.85 1.52
25 26 5.830991 ACACCTTTCATTGTACAAGGCTTAA 59.169 36.000 15.24 8.34 40.85 1.85
26 27 5.381757 ACACCTTTCATTGTACAAGGCTTA 58.618 37.500 15.24 0.90 40.85 3.09
27 28 4.215109 ACACCTTTCATTGTACAAGGCTT 58.785 39.130 15.24 0.00 40.85 4.35
28 29 3.832527 ACACCTTTCATTGTACAAGGCT 58.167 40.909 15.24 0.00 40.85 4.58
29 30 4.037446 TGAACACCTTTCATTGTACAAGGC 59.963 41.667 15.24 0.00 40.85 4.35
30 31 5.278463 CCTGAACACCTTTCATTGTACAAGG 60.278 44.000 13.96 13.96 42.59 3.61
31 32 5.278463 CCCTGAACACCTTTCATTGTACAAG 60.278 44.000 14.65 6.58 0.00 3.16
32 33 4.582656 CCCTGAACACCTTTCATTGTACAA 59.417 41.667 11.41 11.41 0.00 2.41
33 34 4.141287 CCCTGAACACCTTTCATTGTACA 58.859 43.478 0.00 0.00 0.00 2.90
34 35 4.394729 TCCCTGAACACCTTTCATTGTAC 58.605 43.478 0.00 0.00 0.00 2.90
35 36 4.349636 TCTCCCTGAACACCTTTCATTGTA 59.650 41.667 0.00 0.00 0.00 2.41
36 37 3.138283 TCTCCCTGAACACCTTTCATTGT 59.862 43.478 0.00 0.00 0.00 2.71
37 38 3.754965 TCTCCCTGAACACCTTTCATTG 58.245 45.455 0.00 0.00 0.00 2.82
38 39 4.338879 CATCTCCCTGAACACCTTTCATT 58.661 43.478 0.00 0.00 0.00 2.57
39 40 3.875369 GCATCTCCCTGAACACCTTTCAT 60.875 47.826 0.00 0.00 0.00 2.57
40 41 2.553028 GCATCTCCCTGAACACCTTTCA 60.553 50.000 0.00 0.00 0.00 2.69
41 42 2.087646 GCATCTCCCTGAACACCTTTC 58.912 52.381 0.00 0.00 0.00 2.62
42 43 1.707427 AGCATCTCCCTGAACACCTTT 59.293 47.619 0.00 0.00 0.00 3.11
43 44 1.366319 AGCATCTCCCTGAACACCTT 58.634 50.000 0.00 0.00 0.00 3.50
44 45 1.366319 AAGCATCTCCCTGAACACCT 58.634 50.000 0.00 0.00 0.00 4.00
45 46 2.237392 ACTAAGCATCTCCCTGAACACC 59.763 50.000 0.00 0.00 0.00 4.16
46 47 3.618690 ACTAAGCATCTCCCTGAACAC 57.381 47.619 0.00 0.00 0.00 3.32
47 48 5.755409 TTTACTAAGCATCTCCCTGAACA 57.245 39.130 0.00 0.00 0.00 3.18
78 79 9.817809 CTTCTATAGAATAACACTGGTGCTTAA 57.182 33.333 15.47 0.00 33.01 1.85
79 80 8.421784 CCTTCTATAGAATAACACTGGTGCTTA 58.578 37.037 15.47 0.63 33.01 3.09
80 81 7.275920 CCTTCTATAGAATAACACTGGTGCTT 58.724 38.462 15.47 0.00 33.01 3.91
81 82 6.183361 CCCTTCTATAGAATAACACTGGTGCT 60.183 42.308 15.47 0.00 33.01 4.40
82 83 5.992217 CCCTTCTATAGAATAACACTGGTGC 59.008 44.000 15.47 0.00 33.01 5.01
83 84 6.099845 ACCCCTTCTATAGAATAACACTGGTG 59.900 42.308 15.47 5.76 33.01 4.17
84 85 6.099845 CACCCCTTCTATAGAATAACACTGGT 59.900 42.308 15.47 10.85 33.01 4.00
85 86 6.525629 CACCCCTTCTATAGAATAACACTGG 58.474 44.000 15.47 10.88 33.01 4.00
86 87 5.992217 GCACCCCTTCTATAGAATAACACTG 59.008 44.000 15.47 7.80 33.01 3.66
87 88 5.071923 GGCACCCCTTCTATAGAATAACACT 59.928 44.000 15.47 0.00 33.01 3.55
88 89 5.071923 AGGCACCCCTTCTATAGAATAACAC 59.928 44.000 15.47 4.70 38.74 3.32
89 90 5.224441 AGGCACCCCTTCTATAGAATAACA 58.776 41.667 15.47 0.00 38.74 2.41
90 91 5.827326 AGGCACCCCTTCTATAGAATAAC 57.173 43.478 15.47 3.27 38.74 1.89
91 92 8.520119 AATTAGGCACCCCTTCTATAGAATAA 57.480 34.615 15.47 9.00 42.87 1.40
92 93 9.624037 TTAATTAGGCACCCCTTCTATAGAATA 57.376 33.333 15.47 0.37 42.87 1.75
93 94 8.520119 TTAATTAGGCACCCCTTCTATAGAAT 57.480 34.615 15.47 0.00 42.87 2.40
94 95 7.941053 TTAATTAGGCACCCCTTCTATAGAA 57.059 36.000 14.42 14.42 42.87 2.10
95 96 7.348801 TGTTTAATTAGGCACCCCTTCTATAGA 59.651 37.037 0.00 0.00 42.87 1.98
96 97 7.514721 TGTTTAATTAGGCACCCCTTCTATAG 58.485 38.462 0.00 0.00 42.87 1.31
97 98 7.454553 TGTTTAATTAGGCACCCCTTCTATA 57.545 36.000 0.00 0.00 42.87 1.31
98 99 6.335781 TGTTTAATTAGGCACCCCTTCTAT 57.664 37.500 0.00 0.00 42.87 1.98
99 100 5.782677 TGTTTAATTAGGCACCCCTTCTA 57.217 39.130 0.00 0.00 42.87 2.10
100 101 4.668138 TGTTTAATTAGGCACCCCTTCT 57.332 40.909 0.00 0.00 42.87 2.85
101 102 5.201243 AGATGTTTAATTAGGCACCCCTTC 58.799 41.667 0.00 0.00 42.87 3.46
102 103 5.206905 AGATGTTTAATTAGGCACCCCTT 57.793 39.130 0.00 0.00 42.87 3.95
103 104 4.881157 AGATGTTTAATTAGGCACCCCT 57.119 40.909 0.00 0.00 45.61 4.79
104 105 6.605995 AGTTTAGATGTTTAATTAGGCACCCC 59.394 38.462 0.00 0.00 0.00 4.95
105 106 7.556635 AGAGTTTAGATGTTTAATTAGGCACCC 59.443 37.037 0.00 0.00 0.00 4.61
106 107 8.507524 AGAGTTTAGATGTTTAATTAGGCACC 57.492 34.615 0.00 0.00 0.00 5.01
119 120 9.890629 TGATGCTTATTTGTAGAGTTTAGATGT 57.109 29.630 0.00 0.00 0.00 3.06
122 123 9.371136 CAGTGATGCTTATTTGTAGAGTTTAGA 57.629 33.333 0.00 0.00 0.00 2.10
123 124 9.155975 ACAGTGATGCTTATTTGTAGAGTTTAG 57.844 33.333 0.00 0.00 0.00 1.85
124 125 9.502091 AACAGTGATGCTTATTTGTAGAGTTTA 57.498 29.630 0.00 0.00 0.00 2.01
125 126 7.986085 ACAGTGATGCTTATTTGTAGAGTTT 57.014 32.000 0.00 0.00 0.00 2.66
126 127 7.986085 AACAGTGATGCTTATTTGTAGAGTT 57.014 32.000 0.00 0.00 0.00 3.01
127 128 7.986085 AAACAGTGATGCTTATTTGTAGAGT 57.014 32.000 0.00 0.00 0.00 3.24
177 178 5.339477 AGGACTTGTACATGGTAAGGTACT 58.661 41.667 12.86 0.00 42.66 2.73
178 179 5.672421 AGGACTTGTACATGGTAAGGTAC 57.328 43.478 12.86 0.00 42.56 3.34
179 180 6.725369 TGTAAGGACTTGTACATGGTAAGGTA 59.275 38.462 12.86 0.00 0.00 3.08
180 181 5.544948 TGTAAGGACTTGTACATGGTAAGGT 59.455 40.000 12.86 0.00 0.00 3.50
181 182 6.045072 TGTAAGGACTTGTACATGGTAAGG 57.955 41.667 12.86 0.00 0.00 2.69
182 183 7.383687 TCTTGTAAGGACTTGTACATGGTAAG 58.616 38.462 12.86 2.07 30.59 2.34
183 184 7.305813 TCTTGTAAGGACTTGTACATGGTAA 57.694 36.000 12.86 0.00 30.59 2.85
184 185 6.921486 TCTTGTAAGGACTTGTACATGGTA 57.079 37.500 12.86 0.00 30.59 3.25
185 186 5.818678 TCTTGTAAGGACTTGTACATGGT 57.181 39.130 12.86 7.58 30.59 3.55
186 187 6.878923 TCAATCTTGTAAGGACTTGTACATGG 59.121 38.462 12.86 4.52 30.59 3.66
187 188 7.905604 TCAATCTTGTAAGGACTTGTACATG 57.094 36.000 7.18 7.18 30.59 3.21
188 189 8.784043 GTTTCAATCTTGTAAGGACTTGTACAT 58.216 33.333 0.00 0.00 30.59 2.29
189 190 7.042321 CGTTTCAATCTTGTAAGGACTTGTACA 60.042 37.037 0.00 0.00 0.00 2.90
190 191 7.170320 TCGTTTCAATCTTGTAAGGACTTGTAC 59.830 37.037 0.00 0.00 30.89 2.90
191 192 7.170320 GTCGTTTCAATCTTGTAAGGACTTGTA 59.830 37.037 19.19 0.00 43.57 2.41
192 193 6.018180 GTCGTTTCAATCTTGTAAGGACTTGT 60.018 38.462 19.19 0.00 43.57 3.16
193 194 6.363473 GTCGTTTCAATCTTGTAAGGACTTG 58.637 40.000 19.19 0.00 43.57 3.16
194 195 5.469084 GGTCGTTTCAATCTTGTAAGGACTT 59.531 40.000 22.58 0.00 44.89 3.01
195 196 4.995487 GGTCGTTTCAATCTTGTAAGGACT 59.005 41.667 22.58 0.00 44.89 3.85
196 197 4.753107 TGGTCGTTTCAATCTTGTAAGGAC 59.247 41.667 18.67 18.67 44.85 3.85
197 198 4.963373 TGGTCGTTTCAATCTTGTAAGGA 58.037 39.130 2.01 2.01 32.55 3.36
198 199 5.682943 TTGGTCGTTTCAATCTTGTAAGG 57.317 39.130 0.00 0.00 0.00 2.69
199 200 7.305993 GCTTTTTGGTCGTTTCAATCTTGTAAG 60.306 37.037 0.00 0.00 0.00 2.34
200 201 6.474102 GCTTTTTGGTCGTTTCAATCTTGTAA 59.526 34.615 0.00 0.00 0.00 2.41
201 202 5.974751 GCTTTTTGGTCGTTTCAATCTTGTA 59.025 36.000 0.00 0.00 0.00 2.41
202 203 4.803613 GCTTTTTGGTCGTTTCAATCTTGT 59.196 37.500 0.00 0.00 0.00 3.16
203 204 4.803088 TGCTTTTTGGTCGTTTCAATCTTG 59.197 37.500 0.00 0.00 0.00 3.02
204 205 5.004922 TGCTTTTTGGTCGTTTCAATCTT 57.995 34.783 0.00 0.00 0.00 2.40
205 206 4.647424 TGCTTTTTGGTCGTTTCAATCT 57.353 36.364 0.00 0.00 0.00 2.40
206 207 5.710613 TTTGCTTTTTGGTCGTTTCAATC 57.289 34.783 0.00 0.00 0.00 2.67
207 208 5.064579 CCTTTTGCTTTTTGGTCGTTTCAAT 59.935 36.000 0.00 0.00 0.00 2.57
208 209 4.390297 CCTTTTGCTTTTTGGTCGTTTCAA 59.610 37.500 0.00 0.00 0.00 2.69
209 210 3.929610 CCTTTTGCTTTTTGGTCGTTTCA 59.070 39.130 0.00 0.00 0.00 2.69
210 211 3.242284 GCCTTTTGCTTTTTGGTCGTTTC 60.242 43.478 0.00 0.00 36.87 2.78
211 212 2.675844 GCCTTTTGCTTTTTGGTCGTTT 59.324 40.909 0.00 0.00 36.87 3.60
212 213 2.276201 GCCTTTTGCTTTTTGGTCGTT 58.724 42.857 0.00 0.00 36.87 3.85
213 214 1.472552 GGCCTTTTGCTTTTTGGTCGT 60.473 47.619 0.00 0.00 40.92 4.34
214 215 1.217001 GGCCTTTTGCTTTTTGGTCG 58.783 50.000 0.00 0.00 40.92 4.79
215 216 2.323968 TGGCCTTTTGCTTTTTGGTC 57.676 45.000 3.32 0.00 40.92 4.02
216 217 2.364632 GTTGGCCTTTTGCTTTTTGGT 58.635 42.857 3.32 0.00 40.92 3.67
217 218 1.330213 CGTTGGCCTTTTGCTTTTTGG 59.670 47.619 3.32 0.00 40.92 3.28
218 219 1.330213 CCGTTGGCCTTTTGCTTTTTG 59.670 47.619 3.32 0.00 40.92 2.44
219 220 1.208293 TCCGTTGGCCTTTTGCTTTTT 59.792 42.857 3.32 0.00 40.92 1.94
220 221 0.827368 TCCGTTGGCCTTTTGCTTTT 59.173 45.000 3.32 0.00 40.92 2.27
221 222 0.389025 CTCCGTTGGCCTTTTGCTTT 59.611 50.000 3.32 0.00 40.92 3.51
222 223 0.467290 TCTCCGTTGGCCTTTTGCTT 60.467 50.000 3.32 0.00 40.92 3.91
223 224 0.890996 CTCTCCGTTGGCCTTTTGCT 60.891 55.000 3.32 0.00 40.92 3.91
224 225 1.581447 CTCTCCGTTGGCCTTTTGC 59.419 57.895 3.32 0.00 40.16 3.68
225 226 1.581447 GCTCTCCGTTGGCCTTTTG 59.419 57.895 3.32 0.00 0.00 2.44
226 227 1.603739 GGCTCTCCGTTGGCCTTTT 60.604 57.895 3.32 0.00 42.31 2.27
227 228 2.034221 GGCTCTCCGTTGGCCTTT 59.966 61.111 3.32 0.00 42.31 3.11
237 238 5.644206 AGTTTCTATTTTCTTTCGGCTCTCC 59.356 40.000 0.00 0.00 0.00 3.71
238 239 6.538444 CAGTTTCTATTTTCTTTCGGCTCTC 58.462 40.000 0.00 0.00 0.00 3.20
239 240 5.106515 GCAGTTTCTATTTTCTTTCGGCTCT 60.107 40.000 0.00 0.00 0.00 4.09
240 241 5.089411 GCAGTTTCTATTTTCTTTCGGCTC 58.911 41.667 0.00 0.00 0.00 4.70
241 242 4.762251 AGCAGTTTCTATTTTCTTTCGGCT 59.238 37.500 0.00 0.00 0.00 5.52
242 243 5.048153 AGCAGTTTCTATTTTCTTTCGGC 57.952 39.130 0.00 0.00 0.00 5.54
243 244 5.316770 CGAGCAGTTTCTATTTTCTTTCGG 58.683 41.667 0.00 0.00 0.00 4.30
244 245 4.783540 GCGAGCAGTTTCTATTTTCTTTCG 59.216 41.667 0.00 0.00 0.00 3.46
245 246 5.689819 TGCGAGCAGTTTCTATTTTCTTTC 58.310 37.500 0.00 0.00 0.00 2.62
246 247 5.470098 TCTGCGAGCAGTTTCTATTTTCTTT 59.530 36.000 22.47 0.00 43.96 2.52
247 248 4.997395 TCTGCGAGCAGTTTCTATTTTCTT 59.003 37.500 22.47 0.00 43.96 2.52
248 249 4.569943 TCTGCGAGCAGTTTCTATTTTCT 58.430 39.130 22.47 0.00 43.96 2.52
249 250 4.627467 TCTCTGCGAGCAGTTTCTATTTTC 59.373 41.667 22.47 0.00 43.96 2.29
250 251 4.569943 TCTCTGCGAGCAGTTTCTATTTT 58.430 39.130 22.47 0.00 43.96 1.82
251 252 4.193826 TCTCTGCGAGCAGTTTCTATTT 57.806 40.909 22.47 0.00 43.96 1.40
252 253 3.876274 TCTCTGCGAGCAGTTTCTATT 57.124 42.857 22.47 0.00 43.96 1.73
253 254 3.194542 AGTTCTCTGCGAGCAGTTTCTAT 59.805 43.478 22.47 5.54 43.96 1.98
254 255 2.558795 AGTTCTCTGCGAGCAGTTTCTA 59.441 45.455 22.47 4.34 43.96 2.10
255 256 1.342819 AGTTCTCTGCGAGCAGTTTCT 59.657 47.619 22.47 14.20 43.96 2.52
256 257 1.458827 CAGTTCTCTGCGAGCAGTTTC 59.541 52.381 22.47 12.53 43.96 2.78
257 258 1.506493 CAGTTCTCTGCGAGCAGTTT 58.494 50.000 22.47 4.78 43.96 2.66
258 259 0.320247 CCAGTTCTCTGCGAGCAGTT 60.320 55.000 22.47 4.48 43.96 3.16
259 260 1.291588 CCAGTTCTCTGCGAGCAGT 59.708 57.895 22.47 2.35 43.96 4.40
260 261 0.735632 GACCAGTTCTCTGCGAGCAG 60.736 60.000 18.20 18.20 44.86 4.24
261 262 1.290324 GACCAGTTCTCTGCGAGCA 59.710 57.895 0.00 0.00 40.09 4.26
262 263 0.735632 CTGACCAGTTCTCTGCGAGC 60.736 60.000 0.00 0.00 40.09 5.03
263 264 0.884514 TCTGACCAGTTCTCTGCGAG 59.115 55.000 0.00 0.00 40.09 5.03
264 265 1.270826 CTTCTGACCAGTTCTCTGCGA 59.729 52.381 0.00 0.00 40.09 5.10
265 266 1.270826 TCTTCTGACCAGTTCTCTGCG 59.729 52.381 0.00 0.00 40.09 5.18
266 267 3.056250 TGATCTTCTGACCAGTTCTCTGC 60.056 47.826 0.00 0.00 40.09 4.26
267 268 4.220382 AGTGATCTTCTGACCAGTTCTCTG 59.780 45.833 0.00 0.00 41.01 3.35
268 269 4.415596 AGTGATCTTCTGACCAGTTCTCT 58.584 43.478 0.00 0.00 0.00 3.10
269 270 4.799564 AGTGATCTTCTGACCAGTTCTC 57.200 45.455 0.00 0.00 0.00 2.87
270 271 4.346418 ACAAGTGATCTTCTGACCAGTTCT 59.654 41.667 0.00 0.00 0.00 3.01
271 272 4.636249 ACAAGTGATCTTCTGACCAGTTC 58.364 43.478 0.00 0.00 0.00 3.01
272 273 4.696479 ACAAGTGATCTTCTGACCAGTT 57.304 40.909 0.00 0.00 0.00 3.16
273 274 5.808366 TTACAAGTGATCTTCTGACCAGT 57.192 39.130 0.00 0.00 0.00 4.00
274 275 6.346919 CGTTTTACAAGTGATCTTCTGACCAG 60.347 42.308 0.00 0.00 0.00 4.00
275 276 5.465390 CGTTTTACAAGTGATCTTCTGACCA 59.535 40.000 0.00 0.00 0.00 4.02
276 277 5.694910 TCGTTTTACAAGTGATCTTCTGACC 59.305 40.000 0.00 0.00 0.00 4.02
277 278 6.764877 TCGTTTTACAAGTGATCTTCTGAC 57.235 37.500 0.00 0.00 0.00 3.51
278 279 7.780008 TTTCGTTTTACAAGTGATCTTCTGA 57.220 32.000 0.00 0.00 0.00 3.27
281 282 9.872757 TGTATTTTCGTTTTACAAGTGATCTTC 57.127 29.630 0.00 0.00 0.00 2.87
286 287 9.279904 CAGTTTGTATTTTCGTTTTACAAGTGA 57.720 29.630 0.00 0.00 37.21 3.41
287 288 9.068008 ACAGTTTGTATTTTCGTTTTACAAGTG 57.932 29.630 0.00 0.00 37.21 3.16
288 289 9.628746 AACAGTTTGTATTTTCGTTTTACAAGT 57.371 25.926 0.00 0.00 37.21 3.16
291 292 9.224058 GCTAACAGTTTGTATTTTCGTTTTACA 57.776 29.630 0.00 0.00 0.00 2.41
292 293 8.404492 CGCTAACAGTTTGTATTTTCGTTTTAC 58.596 33.333 0.00 0.00 0.00 2.01
293 294 8.333908 TCGCTAACAGTTTGTATTTTCGTTTTA 58.666 29.630 0.00 0.00 0.00 1.52
294 295 7.188157 TCGCTAACAGTTTGTATTTTCGTTTT 58.812 30.769 0.00 0.00 0.00 2.43
295 296 6.717413 TCGCTAACAGTTTGTATTTTCGTTT 58.283 32.000 0.00 0.00 0.00 3.60
296 297 6.289745 TCGCTAACAGTTTGTATTTTCGTT 57.710 33.333 0.00 0.00 0.00 3.85
297 298 5.910637 TCGCTAACAGTTTGTATTTTCGT 57.089 34.783 0.00 0.00 0.00 3.85
298 299 6.586751 TCTTCGCTAACAGTTTGTATTTTCG 58.413 36.000 0.00 0.00 0.00 3.46
299 300 8.068380 AGTTCTTCGCTAACAGTTTGTATTTTC 58.932 33.333 0.00 0.00 0.00 2.29
300 301 7.927048 AGTTCTTCGCTAACAGTTTGTATTTT 58.073 30.769 0.00 0.00 0.00 1.82
301 302 7.492352 AGTTCTTCGCTAACAGTTTGTATTT 57.508 32.000 0.00 0.00 0.00 1.40
302 303 7.012044 ACAAGTTCTTCGCTAACAGTTTGTATT 59.988 33.333 0.00 0.00 0.00 1.89
303 304 6.482308 ACAAGTTCTTCGCTAACAGTTTGTAT 59.518 34.615 0.00 0.00 0.00 2.29
304 305 5.813672 ACAAGTTCTTCGCTAACAGTTTGTA 59.186 36.000 0.00 0.00 0.00 2.41
305 306 4.634443 ACAAGTTCTTCGCTAACAGTTTGT 59.366 37.500 0.00 0.00 0.00 2.83
306 307 4.963953 CACAAGTTCTTCGCTAACAGTTTG 59.036 41.667 0.00 0.00 0.00 2.93
307 308 4.873827 TCACAAGTTCTTCGCTAACAGTTT 59.126 37.500 0.00 0.00 0.00 2.66
308 309 4.439057 TCACAAGTTCTTCGCTAACAGTT 58.561 39.130 0.00 0.00 0.00 3.16
309 310 4.054780 TCACAAGTTCTTCGCTAACAGT 57.945 40.909 0.00 0.00 0.00 3.55
310 311 6.706055 TTATCACAAGTTCTTCGCTAACAG 57.294 37.500 0.00 0.00 0.00 3.16
311 312 7.667043 ATTTATCACAAGTTCTTCGCTAACA 57.333 32.000 0.00 0.00 0.00 2.41
312 313 8.840867 CAAATTTATCACAAGTTCTTCGCTAAC 58.159 33.333 0.00 0.00 0.00 2.34
313 314 8.779303 TCAAATTTATCACAAGTTCTTCGCTAA 58.221 29.630 0.00 0.00 0.00 3.09
314 315 8.317891 TCAAATTTATCACAAGTTCTTCGCTA 57.682 30.769 0.00 0.00 0.00 4.26
315 316 7.173218 TCTCAAATTTATCACAAGTTCTTCGCT 59.827 33.333 0.00 0.00 0.00 4.93
316 317 7.269297 GTCTCAAATTTATCACAAGTTCTTCGC 59.731 37.037 0.00 0.00 0.00 4.70
317 318 8.499162 AGTCTCAAATTTATCACAAGTTCTTCG 58.501 33.333 0.00 0.00 0.00 3.79
318 319 9.604626 CAGTCTCAAATTTATCACAAGTTCTTC 57.395 33.333 0.00 0.00 0.00 2.87
319 320 8.078596 GCAGTCTCAAATTTATCACAAGTTCTT 58.921 33.333 0.00 0.00 0.00 2.52
320 321 7.229306 TGCAGTCTCAAATTTATCACAAGTTCT 59.771 33.333 0.00 0.00 0.00 3.01
321 322 7.362662 TGCAGTCTCAAATTTATCACAAGTTC 58.637 34.615 0.00 0.00 0.00 3.01
322 323 7.275888 TGCAGTCTCAAATTTATCACAAGTT 57.724 32.000 0.00 0.00 0.00 2.66
323 324 6.882610 TGCAGTCTCAAATTTATCACAAGT 57.117 33.333 0.00 0.00 0.00 3.16
336 337 9.677567 GTTTGACTTTTAAATATGCAGTCTCAA 57.322 29.630 14.82 7.72 35.80 3.02
337 338 9.066892 AGTTTGACTTTTAAATATGCAGTCTCA 57.933 29.630 14.82 3.34 35.80 3.27
338 339 9.334693 CAGTTTGACTTTTAAATATGCAGTCTC 57.665 33.333 14.82 8.05 35.80 3.36
339 340 8.299570 CCAGTTTGACTTTTAAATATGCAGTCT 58.700 33.333 14.82 0.00 35.80 3.24
340 341 8.082242 ACCAGTTTGACTTTTAAATATGCAGTC 58.918 33.333 9.19 9.19 35.42 3.51
341 342 7.951591 ACCAGTTTGACTTTTAAATATGCAGT 58.048 30.769 0.00 0.00 0.00 4.40
342 343 8.702438 CAACCAGTTTGACTTTTAAATATGCAG 58.298 33.333 0.00 0.00 37.39 4.41
343 344 7.655328 CCAACCAGTTTGACTTTTAAATATGCA 59.345 33.333 0.00 0.00 37.39 3.96
344 345 7.655732 ACCAACCAGTTTGACTTTTAAATATGC 59.344 33.333 0.00 0.00 37.39 3.14
345 346 9.541143 AACCAACCAGTTTGACTTTTAAATATG 57.459 29.630 0.00 0.00 37.39 1.78
359 360 2.175202 TGCTGACAAACCAACCAGTTT 58.825 42.857 0.00 0.00 40.57 2.66
360 361 1.846007 TGCTGACAAACCAACCAGTT 58.154 45.000 0.00 0.00 0.00 3.16
361 362 2.071778 ATGCTGACAAACCAACCAGT 57.928 45.000 0.00 0.00 0.00 4.00
362 363 3.125316 CAAATGCTGACAAACCAACCAG 58.875 45.455 0.00 0.00 0.00 4.00
363 364 2.158986 CCAAATGCTGACAAACCAACCA 60.159 45.455 0.00 0.00 0.00 3.67
364 365 2.102252 TCCAAATGCTGACAAACCAACC 59.898 45.455 0.00 0.00 0.00 3.77
365 366 3.123050 GTCCAAATGCTGACAAACCAAC 58.877 45.455 0.00 0.00 0.00 3.77
366 367 2.762887 TGTCCAAATGCTGACAAACCAA 59.237 40.909 0.00 0.00 38.48 3.67
367 368 2.100584 GTGTCCAAATGCTGACAAACCA 59.899 45.455 0.00 0.00 42.67 3.67
368 369 2.100584 TGTGTCCAAATGCTGACAAACC 59.899 45.455 0.00 0.00 42.67 3.27
369 370 3.435105 TGTGTCCAAATGCTGACAAAC 57.565 42.857 0.00 0.00 42.67 2.93
370 371 5.068329 TGTTATGTGTCCAAATGCTGACAAA 59.932 36.000 0.00 0.00 42.67 2.83
371 372 4.582240 TGTTATGTGTCCAAATGCTGACAA 59.418 37.500 0.00 0.00 42.67 3.18
372 373 4.140536 TGTTATGTGTCCAAATGCTGACA 58.859 39.130 0.00 0.00 39.08 3.58
373 374 4.764679 TGTTATGTGTCCAAATGCTGAC 57.235 40.909 0.00 0.00 0.00 3.51
374 375 4.826733 AGTTGTTATGTGTCCAAATGCTGA 59.173 37.500 0.00 0.00 0.00 4.26
375 376 5.125100 AGTTGTTATGTGTCCAAATGCTG 57.875 39.130 0.00 0.00 0.00 4.41
376 377 5.531634 CAAGTTGTTATGTGTCCAAATGCT 58.468 37.500 0.00 0.00 0.00 3.79
377 378 4.150451 GCAAGTTGTTATGTGTCCAAATGC 59.850 41.667 4.48 0.00 0.00 3.56
378 379 4.685628 GGCAAGTTGTTATGTGTCCAAATG 59.314 41.667 4.48 0.00 0.00 2.32
379 380 4.558496 CGGCAAGTTGTTATGTGTCCAAAT 60.558 41.667 4.48 0.00 0.00 2.32
380 381 3.243234 CGGCAAGTTGTTATGTGTCCAAA 60.243 43.478 4.48 0.00 0.00 3.28
381 382 2.292016 CGGCAAGTTGTTATGTGTCCAA 59.708 45.455 4.48 0.00 0.00 3.53
382 383 1.876799 CGGCAAGTTGTTATGTGTCCA 59.123 47.619 4.48 0.00 0.00 4.02
383 384 1.401018 GCGGCAAGTTGTTATGTGTCC 60.401 52.381 4.48 0.00 0.00 4.02
384 385 1.401018 GGCGGCAAGTTGTTATGTGTC 60.401 52.381 3.07 0.00 0.00 3.67
385 386 0.596082 GGCGGCAAGTTGTTATGTGT 59.404 50.000 3.07 0.00 0.00 3.72
386 387 0.881118 AGGCGGCAAGTTGTTATGTG 59.119 50.000 13.08 0.00 0.00 3.21
387 388 1.616159 AAGGCGGCAAGTTGTTATGT 58.384 45.000 13.08 0.00 0.00 2.29
388 389 3.840890 TTAAGGCGGCAAGTTGTTATG 57.159 42.857 13.08 0.00 0.00 1.90
389 390 5.825679 TCATATTAAGGCGGCAAGTTGTTAT 59.174 36.000 13.08 0.00 0.00 1.89
390 391 5.065474 GTCATATTAAGGCGGCAAGTTGTTA 59.935 40.000 13.08 0.00 0.00 2.41
391 392 4.013728 TCATATTAAGGCGGCAAGTTGTT 58.986 39.130 13.08 0.00 0.00 2.83
392 393 3.377172 GTCATATTAAGGCGGCAAGTTGT 59.623 43.478 13.08 0.00 0.00 3.32
393 394 3.546020 CGTCATATTAAGGCGGCAAGTTG 60.546 47.826 13.08 0.00 0.00 3.16
394 395 2.612212 CGTCATATTAAGGCGGCAAGTT 59.388 45.455 13.08 0.00 0.00 2.66
395 396 2.210116 CGTCATATTAAGGCGGCAAGT 58.790 47.619 13.08 0.00 0.00 3.16
396 397 1.069906 GCGTCATATTAAGGCGGCAAG 60.070 52.381 13.08 0.00 0.00 4.01
397 398 0.941542 GCGTCATATTAAGGCGGCAA 59.058 50.000 13.08 0.00 0.00 4.52
398 399 0.882927 GGCGTCATATTAAGGCGGCA 60.883 55.000 13.08 0.00 45.31 5.69
399 400 0.882927 TGGCGTCATATTAAGGCGGC 60.883 55.000 11.83 11.83 45.99 6.53
400 401 0.865769 GTGGCGTCATATTAAGGCGG 59.134 55.000 0.00 0.00 0.00 6.13
401 402 1.577468 TGTGGCGTCATATTAAGGCG 58.423 50.000 0.00 0.00 0.00 5.52
402 403 4.102649 GTTTTGTGGCGTCATATTAAGGC 58.897 43.478 0.00 0.00 0.00 4.35
403 404 4.398044 AGGTTTTGTGGCGTCATATTAAGG 59.602 41.667 0.00 0.00 0.00 2.69
404 405 5.123186 TGAGGTTTTGTGGCGTCATATTAAG 59.877 40.000 0.00 0.00 0.00 1.85
405 406 5.004448 TGAGGTTTTGTGGCGTCATATTAA 58.996 37.500 0.00 0.00 0.00 1.40
406 407 4.393680 GTGAGGTTTTGTGGCGTCATATTA 59.606 41.667 0.00 0.00 33.12 0.98
407 408 3.190535 GTGAGGTTTTGTGGCGTCATATT 59.809 43.478 0.00 0.00 33.12 1.28
408 409 2.747446 GTGAGGTTTTGTGGCGTCATAT 59.253 45.455 0.00 0.00 33.12 1.78
409 410 2.147958 GTGAGGTTTTGTGGCGTCATA 58.852 47.619 0.00 0.00 33.12 2.15
420 421 0.598158 TTAGCGACGCGTGAGGTTTT 60.598 50.000 20.70 0.00 0.00 2.43
425 426 2.152699 CCTGTTAGCGACGCGTGAG 61.153 63.158 20.70 12.32 0.00 3.51
428 429 2.594119 CTAGCCTGTTAGCGACGCGT 62.594 60.000 13.85 13.85 38.01 6.01
451 452 9.175312 GGTAAGGGGAAACTTATTTAGAAGAAG 57.825 37.037 0.00 0.00 35.57 2.85
452 453 8.671409 TGGTAAGGGGAAACTTATTTAGAAGAA 58.329 33.333 0.00 0.00 35.57 2.52
453 454 8.222138 TGGTAAGGGGAAACTTATTTAGAAGA 57.778 34.615 0.00 0.00 35.57 2.87
470 471 6.019779 TCGTTTGATTGAAAATGGTAAGGG 57.980 37.500 0.00 0.00 0.00 3.95
473 474 7.258441 TGTGTTCGTTTGATTGAAAATGGTAA 58.742 30.769 0.00 0.00 0.00 2.85
474 475 6.796426 TGTGTTCGTTTGATTGAAAATGGTA 58.204 32.000 0.00 0.00 0.00 3.25
475 476 5.655488 TGTGTTCGTTTGATTGAAAATGGT 58.345 33.333 0.00 0.00 0.00 3.55
476 477 5.175491 CCTGTGTTCGTTTGATTGAAAATGG 59.825 40.000 0.00 0.00 0.00 3.16
477 478 5.976534 TCCTGTGTTCGTTTGATTGAAAATG 59.023 36.000 0.00 0.00 0.00 2.32
478 479 6.142818 TCCTGTGTTCGTTTGATTGAAAAT 57.857 33.333 0.00 0.00 0.00 1.82
482 483 4.384940 TCATCCTGTGTTCGTTTGATTGA 58.615 39.130 0.00 0.00 0.00 2.57
503 504 6.428385 AGTAGTATTGCTGCAGTTGAATTC 57.572 37.500 16.64 9.18 31.85 2.17
531 532 1.032014 AATGCTTGCTTCGGTGTTGT 58.968 45.000 0.00 0.00 0.00 3.32
532 533 1.788308 CAAATGCTTGCTTCGGTGTTG 59.212 47.619 0.00 0.00 0.00 3.33
556 557 4.142816 CCATTTGTCAGACGAGGACATTTC 60.143 45.833 8.80 0.00 44.11 2.17
569 570 4.440214 GCGTTCGCCATTTGTCAG 57.560 55.556 5.87 0.00 0.00 3.51
590 591 0.249120 TGTCACTAGGTCAATGCCCG 59.751 55.000 0.00 0.00 0.00 6.13
593 594 3.551890 CGTATGTGTCACTAGGTCAATGC 59.448 47.826 4.27 0.00 0.00 3.56
678 679 2.475864 CCGCATGACCAATGTTGTTTTG 59.524 45.455 0.00 0.00 38.65 2.44
708 709 3.975168 TCTTGGCAGAGGGTTTAGTAC 57.025 47.619 0.00 0.00 0.00 2.73
709 710 3.008704 GGTTCTTGGCAGAGGGTTTAGTA 59.991 47.826 0.00 0.00 0.00 1.82
710 711 2.224793 GGTTCTTGGCAGAGGGTTTAGT 60.225 50.000 0.00 0.00 0.00 2.24
711 712 2.224769 TGGTTCTTGGCAGAGGGTTTAG 60.225 50.000 0.00 0.00 0.00 1.85
738 739 8.688747 AATGGAATCTTCTGGTTGATCTAATC 57.311 34.615 0.00 0.00 0.00 1.75
786 793 2.185350 CGGATTCTGCCAGCTCGT 59.815 61.111 0.00 0.00 0.00 4.18
865 872 3.964909 AGTTTTCATTTCCAGTTCGCAC 58.035 40.909 0.00 0.00 0.00 5.34
867 874 4.467735 GAGAGTTTTCATTTCCAGTTCGC 58.532 43.478 0.00 0.00 0.00 4.70
890 897 9.991388 CGGTCTAGCTTTATACTATAAGATGAC 57.009 37.037 0.00 0.00 0.00 3.06
940 948 0.525668 GTGCGATCGACGACTTGGAT 60.526 55.000 21.57 0.00 45.77 3.41
943 951 2.979808 CGTGCGATCGACGACTTG 59.020 61.111 25.49 4.44 45.77 3.16
963 971 1.302949 TGGATAGCCAACTGGTGCC 59.697 57.895 0.00 0.00 42.49 5.01
1119 1131 4.530857 CCTCCGTCCGTCATGGCC 62.531 72.222 0.00 0.00 37.80 5.36
1122 1134 2.758327 TCCCCTCCGTCCGTCATG 60.758 66.667 0.00 0.00 0.00 3.07
1188 1200 6.906659 ACATGTAAAAAGTTGCTCAGAGATG 58.093 36.000 0.00 0.00 0.00 2.90
1195 1210 7.042523 AGCATTTTGACATGTAAAAAGTTGCTC 60.043 33.333 28.66 13.49 36.74 4.26
1279 1354 4.322198 CCTGATGAAACCCACAATCCAAAG 60.322 45.833 0.00 0.00 0.00 2.77
1411 1486 5.105432 TGCATATGTATGGCAAACAATGTGT 60.105 36.000 4.29 0.00 34.32 3.72
1428 1543 3.303593 GCCTGACGAGAAATGTGCATATG 60.304 47.826 0.00 0.00 0.00 1.78
1429 1544 2.874701 GCCTGACGAGAAATGTGCATAT 59.125 45.455 0.00 0.00 0.00 1.78
1430 1545 2.279741 GCCTGACGAGAAATGTGCATA 58.720 47.619 0.00 0.00 0.00 3.14
1432 1547 2.543578 GCCTGACGAGAAATGTGCA 58.456 52.632 0.00 0.00 0.00 4.57
1444 1559 4.463515 CATATATATGCATGCGCCTGAC 57.536 45.455 17.36 8.34 37.32 3.51
1479 1595 7.217070 GCACAATTAGTTTCTCACGATCAATTC 59.783 37.037 0.00 0.00 0.00 2.17
1502 1618 4.338539 ACCGACGACGTCTGGCAC 62.339 66.667 27.32 5.61 37.88 5.01
1726 1846 2.237392 GGCAACAGAGGAGGAGTACAAT 59.763 50.000 0.00 0.00 0.00 2.71
1728 1848 1.203187 AGGCAACAGAGGAGGAGTACA 60.203 52.381 0.00 0.00 41.41 2.90
1729 1849 1.205893 CAGGCAACAGAGGAGGAGTAC 59.794 57.143 0.00 0.00 41.41 2.73
1730 1850 1.077169 TCAGGCAACAGAGGAGGAGTA 59.923 52.381 0.00 0.00 41.41 2.59
1731 1851 0.178921 TCAGGCAACAGAGGAGGAGT 60.179 55.000 0.00 0.00 41.41 3.85
1732 1852 1.202330 ATCAGGCAACAGAGGAGGAG 58.798 55.000 0.00 0.00 34.62 3.69
1733 1853 1.661463 AATCAGGCAACAGAGGAGGA 58.339 50.000 0.00 0.00 34.62 3.71
1734 1854 2.237143 TGTAATCAGGCAACAGAGGAGG 59.763 50.000 0.00 0.00 34.62 4.30
1735 1855 3.616956 TGTAATCAGGCAACAGAGGAG 57.383 47.619 0.00 0.00 34.62 3.69
1736 1856 3.877559 CATGTAATCAGGCAACAGAGGA 58.122 45.455 0.00 0.00 34.62 3.71
1754 1874 2.353889 CCTCCGTTGATTCTTCTGCATG 59.646 50.000 0.00 0.00 0.00 4.06
1759 1879 1.902508 TCAGCCTCCGTTGATTCTTCT 59.097 47.619 0.00 0.00 0.00 2.85
1760 1880 2.003301 GTCAGCCTCCGTTGATTCTTC 58.997 52.381 0.00 0.00 31.34 2.87
1761 1881 1.625818 AGTCAGCCTCCGTTGATTCTT 59.374 47.619 0.00 0.00 31.34 2.52
1794 1914 3.694889 CATGCATGCACACACAGAG 57.305 52.632 25.37 1.78 0.00 3.35
1805 1925 0.319083 ACAAACCACCTGCATGCATG 59.681 50.000 22.97 22.70 0.00 4.06
1806 1926 0.319083 CACAAACCACCTGCATGCAT 59.681 50.000 22.97 3.95 0.00 3.96
2009 2129 3.168604 CGAGCACTCGCAGACGTG 61.169 66.667 7.18 0.00 46.50 4.49
2037 2157 1.731433 GCATCTGGTGGCGCATTCAT 61.731 55.000 10.83 0.00 0.00 2.57
2038 2158 2.409055 GCATCTGGTGGCGCATTCA 61.409 57.895 10.83 2.34 0.00 2.57
2048 2168 1.609208 GTGTCCTTGTTGCATCTGGT 58.391 50.000 0.00 0.00 0.00 4.00
2230 2350 6.128715 CGATCACCGTATAGTGTATTACTCGT 60.129 42.308 0.00 0.00 40.89 4.18
2231 2351 6.089954 TCGATCACCGTATAGTGTATTACTCG 59.910 42.308 0.00 0.00 38.98 4.18
2232 2352 7.356641 TCGATCACCGTATAGTGTATTACTC 57.643 40.000 0.00 0.00 38.98 2.59
2241 2363 5.173664 TCGTATCATCGATCACCGTATAGT 58.826 41.667 0.00 0.00 39.75 2.12
2249 2371 1.318785 GCGCATCGTATCATCGATCAC 59.681 52.381 0.30 0.00 46.64 3.06
2291 2418 1.274703 ACGCCCCTCAGACATCCAAT 61.275 55.000 0.00 0.00 0.00 3.16
2339 2466 5.483213 CGCAAGAAACAATCAACACAAAAG 58.517 37.500 0.00 0.00 43.02 2.27
2382 2515 6.375455 GGAGTAGAGATTGATCAAGCCAAAAA 59.625 38.462 19.65 0.00 0.00 1.94
2461 2594 4.176752 GGTGATGGGAGCGGGGAC 62.177 72.222 0.00 0.00 0.00 4.46
2462 2595 4.731853 TGGTGATGGGAGCGGGGA 62.732 66.667 0.00 0.00 0.00 4.81
2463 2596 4.489771 GTGGTGATGGGAGCGGGG 62.490 72.222 0.00 0.00 0.00 5.73
2465 2598 2.187946 GAGTGGTGATGGGAGCGG 59.812 66.667 0.00 0.00 0.00 5.52
2466 2599 1.142748 GAGAGTGGTGATGGGAGCG 59.857 63.158 0.00 0.00 0.00 5.03
2467 2600 1.267574 TGGAGAGTGGTGATGGGAGC 61.268 60.000 0.00 0.00 0.00 4.70
2474 2607 1.052124 ACCGGTTTGGAGAGTGGTGA 61.052 55.000 0.00 0.00 42.00 4.02
2543 2676 7.254863 GGAAAGTTTAGTCCGTGATTTTGTGTA 60.255 37.037 0.00 0.00 0.00 2.90
2720 3798 7.014038 ACAACCGTACACTCCTCCTATTAATAG 59.986 40.741 14.56 14.56 0.00 1.73
2721 3799 6.835488 ACAACCGTACACTCCTCCTATTAATA 59.165 38.462 0.00 0.00 0.00 0.98
2722 3800 5.659971 ACAACCGTACACTCCTCCTATTAAT 59.340 40.000 0.00 0.00 0.00 1.40
2723 3801 5.018809 ACAACCGTACACTCCTCCTATTAA 58.981 41.667 0.00 0.00 0.00 1.40
2724 3802 4.400251 CACAACCGTACACTCCTCCTATTA 59.600 45.833 0.00 0.00 0.00 0.98
2725 3803 3.194968 CACAACCGTACACTCCTCCTATT 59.805 47.826 0.00 0.00 0.00 1.73
2726 3804 2.758979 CACAACCGTACACTCCTCCTAT 59.241 50.000 0.00 0.00 0.00 2.57
2727 3805 2.165167 CACAACCGTACACTCCTCCTA 58.835 52.381 0.00 0.00 0.00 2.94
2728 3806 0.966920 CACAACCGTACACTCCTCCT 59.033 55.000 0.00 0.00 0.00 3.69
2729 3807 0.963962 TCACAACCGTACACTCCTCC 59.036 55.000 0.00 0.00 0.00 4.30
2730 3808 2.607187 CATCACAACCGTACACTCCTC 58.393 52.381 0.00 0.00 0.00 3.71
2737 3815 0.037975 ACCGACCATCACAACCGTAC 60.038 55.000 0.00 0.00 0.00 3.67
2738 3816 0.680618 AACCGACCATCACAACCGTA 59.319 50.000 0.00 0.00 0.00 4.02
2739 3817 0.179040 AAACCGACCATCACAACCGT 60.179 50.000 0.00 0.00 0.00 4.83
2754 3832 0.689055 AGGAACCGACCTACCAAACC 59.311 55.000 0.00 0.00 38.65 3.27
2763 3841 0.598419 ACGAACGAAAGGAACCGACC 60.598 55.000 0.14 0.00 0.00 4.79
2772 3850 0.942410 TGGAGGCGAACGAACGAAAG 60.942 55.000 9.67 0.00 35.09 2.62
2855 3933 7.713073 ACAACCGTATCAATCAAAAACCAAAAT 59.287 29.630 0.00 0.00 0.00 1.82
2911 3993 3.941188 CCAGCGTGGGAGTGGTGT 61.941 66.667 0.00 0.00 32.67 4.16
2914 3996 4.415150 ATGCCAGCGTGGGAGTGG 62.415 66.667 6.23 0.00 42.59 4.00
2915 3997 3.129502 CATGCCAGCGTGGGAGTG 61.130 66.667 3.84 1.71 42.59 3.51
2916 3998 4.415150 CCATGCCAGCGTGGGAGT 62.415 66.667 21.04 0.00 42.59 3.85
3036 4118 1.535860 GCTGATGTTCTCGAGCTCCTC 60.536 57.143 7.81 6.32 0.00 3.71



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.