Multiple sequence alignment - TraesCS7D01G339300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G339300 chr7D 100.000 3747 0 0 1 3747 433712587 433716333 0.000000e+00 6920.0
1 TraesCS7D01G339300 chr7D 100.000 2069 0 0 4030 6098 433716616 433718684 0.000000e+00 3821.0
2 TraesCS7D01G339300 chr7D 95.808 167 7 0 5923 6089 235153931 235153765 2.800000e-68 270.0
3 TraesCS7D01G339300 chr7D 95.238 168 8 0 5925 6092 117887794 117887627 3.620000e-67 267.0
4 TraesCS7D01G339300 chr7D 93.578 109 7 0 2684 2792 271752949 271752841 4.890000e-36 163.0
5 TraesCS7D01G339300 chr7B 93.949 1983 69 26 741 2695 451074802 451076761 0.000000e+00 2950.0
6 TraesCS7D01G339300 chr7B 90.980 1530 81 26 4031 5532 451077771 451079271 0.000000e+00 2008.0
7 TraesCS7D01G339300 chr7B 97.506 802 16 4 2943 3741 451076946 451077746 0.000000e+00 1367.0
8 TraesCS7D01G339300 chr7B 88.235 425 16 13 5520 5926 451079298 451079706 1.540000e-130 477.0
9 TraesCS7D01G339300 chr7B 94.231 104 6 0 2780 2883 451076845 451076948 6.330000e-35 159.0
10 TraesCS7D01G339300 chr7B 88.618 123 13 1 2677 2799 206507390 206507511 1.370000e-31 148.0
11 TraesCS7D01G339300 chr7B 89.855 69 7 0 2876 2944 165708295 165708227 8.420000e-14 89.8
12 TraesCS7D01G339300 chr2D 95.822 742 26 5 1 739 76767735 76766996 0.000000e+00 1194.0
13 TraesCS7D01G339300 chr4D 95.013 742 32 5 1 739 42265686 42266425 0.000000e+00 1160.0
14 TraesCS7D01G339300 chr4D 94.332 741 37 5 1 739 127550251 127550988 0.000000e+00 1131.0
15 TraesCS7D01G339300 chr4D 92.308 65 3 2 2881 2945 274460513 274460451 2.340000e-14 91.6
16 TraesCS7D01G339300 chr7A 88.970 961 67 24 1743 2687 484219974 484220911 0.000000e+00 1151.0
17 TraesCS7D01G339300 chr7A 92.463 743 49 3 2943 3679 484220999 484221740 0.000000e+00 1055.0
18 TraesCS7D01G339300 chr7A 89.711 797 52 13 762 1550 484218889 484219663 0.000000e+00 990.0
19 TraesCS7D01G339300 chr7A 93.276 580 26 6 4081 4655 484222084 484222655 0.000000e+00 843.0
20 TraesCS7D01G339300 chr7A 82.692 676 79 18 4648 5303 484222682 484223339 3.190000e-157 566.0
21 TraesCS7D01G339300 chr7A 85.269 353 28 11 5369 5706 484223365 484223708 5.850000e-90 342.0
22 TraesCS7D01G339300 chr7A 100.000 43 0 0 3699 3741 484221741 484221783 5.070000e-11 80.5
23 TraesCS7D01G339300 chr5A 93.501 754 43 6 1 750 580820003 580819252 0.000000e+00 1116.0
24 TraesCS7D01G339300 chr6D 93.484 752 43 6 1 749 446607260 446606512 0.000000e+00 1112.0
25 TraesCS7D01G339300 chr6D 91.228 114 10 0 2679 2792 276875702 276875589 8.180000e-34 156.0
26 TraesCS7D01G339300 chr2A 93.809 743 38 6 1 739 688578196 688578934 0.000000e+00 1110.0
27 TraesCS7D01G339300 chr2A 93.280 744 46 4 1 742 723537166 723536425 0.000000e+00 1094.0
28 TraesCS7D01G339300 chr5D 93.522 741 44 4 1 739 138476445 138477183 0.000000e+00 1099.0
29 TraesCS7D01G339300 chr5D 95.349 172 6 2 5917 6088 108087544 108087713 7.790000e-69 272.0
30 TraesCS7D01G339300 chr5D 94.798 173 9 0 5921 6093 355074730 355074558 2.800000e-68 270.0
31 TraesCS7D01G339300 chr5D 96.341 164 6 0 5925 6088 363124869 363125032 2.800000e-68 270.0
32 TraesCS7D01G339300 chr5D 95.783 166 7 0 5925 6090 103652423 103652588 1.010000e-67 268.0
33 TraesCS7D01G339300 chr5D 91.045 67 4 1 2875 2941 476275187 476275251 8.420000e-14 89.8
34 TraesCS7D01G339300 chr1D 92.904 761 36 10 1 753 479555781 479556531 0.000000e+00 1090.0
35 TraesCS7D01G339300 chr6A 95.266 169 8 0 5921 6089 96715955 96716123 1.010000e-67 268.0
36 TraesCS7D01G339300 chr6A 91.228 114 10 0 2679 2792 399221469 399221582 8.180000e-34 156.0
37 TraesCS7D01G339300 chr6A 90.769 65 6 0 2881 2945 509276955 509277019 3.030000e-13 87.9
38 TraesCS7D01G339300 chr6A 87.143 70 7 1 2880 2949 104308554 104308487 1.820000e-10 78.7
39 TraesCS7D01G339300 chr2B 94.767 172 9 0 5921 6092 357152497 357152326 1.010000e-67 268.0
40 TraesCS7D01G339300 chr2B 96.190 105 4 0 2684 2788 385536819 385536923 8.130000e-39 172.0
41 TraesCS7D01G339300 chr5B 93.714 175 11 0 5923 6097 656245130 656244956 4.690000e-66 263.0
42 TraesCS7D01G339300 chr5B 91.045 67 4 1 2875 2941 583738320 583738384 8.420000e-14 89.8
43 TraesCS7D01G339300 chr5B 90.476 63 4 1 2885 2945 548298179 548298241 1.410000e-11 82.4
44 TraesCS7D01G339300 chrUn 92.982 114 8 0 2681 2794 85401533 85401646 3.780000e-37 167.0
45 TraesCS7D01G339300 chrUn 92.982 114 8 0 2681 2794 242415592 242415479 3.780000e-37 167.0
46 TraesCS7D01G339300 chrUn 88.060 67 7 1 2875 2941 255530306 255530371 1.820000e-10 78.7
47 TraesCS7D01G339300 chr6B 92.105 114 9 0 2679 2792 438619142 438619029 1.760000e-35 161.0
48 TraesCS7D01G339300 chr1A 91.818 110 9 0 2683 2792 53034585 53034694 2.940000e-33 154.0
49 TraesCS7D01G339300 chr1B 88.060 67 7 1 2875 2941 52757851 52757916 1.820000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G339300 chr7D 433712587 433718684 6097 False 5370.500000 6920 100.000000 1 6098 2 chr7D.!!$F1 6097
1 TraesCS7D01G339300 chr7B 451074802 451079706 4904 False 1392.200000 2950 92.980200 741 5926 5 chr7B.!!$F2 5185
2 TraesCS7D01G339300 chr2D 76766996 76767735 739 True 1194.000000 1194 95.822000 1 739 1 chr2D.!!$R1 738
3 TraesCS7D01G339300 chr4D 42265686 42266425 739 False 1160.000000 1160 95.013000 1 739 1 chr4D.!!$F1 738
4 TraesCS7D01G339300 chr4D 127550251 127550988 737 False 1131.000000 1131 94.332000 1 739 1 chr4D.!!$F2 738
5 TraesCS7D01G339300 chr7A 484218889 484223708 4819 False 718.214286 1151 90.340143 762 5706 7 chr7A.!!$F1 4944
6 TraesCS7D01G339300 chr5A 580819252 580820003 751 True 1116.000000 1116 93.501000 1 750 1 chr5A.!!$R1 749
7 TraesCS7D01G339300 chr6D 446606512 446607260 748 True 1112.000000 1112 93.484000 1 749 1 chr6D.!!$R2 748
8 TraesCS7D01G339300 chr2A 688578196 688578934 738 False 1110.000000 1110 93.809000 1 739 1 chr2A.!!$F1 738
9 TraesCS7D01G339300 chr2A 723536425 723537166 741 True 1094.000000 1094 93.280000 1 742 1 chr2A.!!$R1 741
10 TraesCS7D01G339300 chr5D 138476445 138477183 738 False 1099.000000 1099 93.522000 1 739 1 chr5D.!!$F3 738
11 TraesCS7D01G339300 chr1D 479555781 479556531 750 False 1090.000000 1090 92.904000 1 753 1 chr1D.!!$F1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 774 0.249238 AAGAGGCTAGATCAAGCGCG 60.249 55.0 0.00 0.00 43.74 6.86 F
928 945 0.457166 CCACACCTCATGCGCAATTG 60.457 55.0 17.11 9.95 0.00 2.32 F
2010 2180 0.737219 CCACTTGCTGATGCTAAGGC 59.263 55.0 0.00 0.00 40.48 4.35 F
2163 2340 1.291877 CTTCTTGCGGTCCTGGTTCG 61.292 60.0 0.00 0.18 0.00 3.95 F
3624 3821 1.177401 GAAGTGTCTCATTTGGGCCC 58.823 55.0 17.59 17.59 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2197 1.000145 GCGCACTGGCTAACTAACTC 59.000 55.0 0.30 0.0 38.1 3.01 R
2523 2701 1.106285 CCCAAGCAATAACAGAGCCC 58.894 55.0 0.00 0.0 0.0 5.19 R
3517 3709 0.893727 CACAAGGGGCAAGGGTGTAC 60.894 60.0 0.00 0.0 0.0 2.90 R
4054 4253 0.729690 GGCTGCCAATCTCTTTCGAC 59.270 55.0 15.17 0.0 0.0 4.20 R
5236 5524 0.107456 ATGACGGCCTGATGTGATCC 59.893 55.0 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.396522 ACTATCTGGGTGACGGTATCTAC 58.603 47.826 0.00 0.00 0.00 2.59
218 219 1.555075 GTGGGAGGTGATGACTGCTTA 59.445 52.381 0.00 0.00 0.00 3.09
324 325 1.266867 TGCCTGAGCATGGAGTAGCA 61.267 55.000 0.00 0.00 46.52 3.49
362 363 6.854892 CAGTTCACTCAATTTCATGAAGACAC 59.145 38.462 8.41 3.07 31.94 3.67
372 373 1.726248 CATGAAGACACGCGTGATTGA 59.274 47.619 42.94 29.34 0.00 2.57
477 478 7.763172 ATTCGTTTGCAAAACTATGTGAAAA 57.237 28.000 14.67 0.00 0.00 2.29
616 628 2.191908 GCCGGCACATATGGGTCA 59.808 61.111 24.80 0.00 0.00 4.02
625 637 2.180204 ATATGGGTCAGCGCGTTGC 61.180 57.895 18.88 12.92 46.98 4.17
739 754 2.281484 GCCCGTTGGAGTTGCTCA 60.281 61.111 0.00 0.00 31.08 4.26
746 761 1.268079 GTTGGAGTTGCTCAAAGAGGC 59.732 52.381 0.00 0.00 31.08 4.70
759 774 0.249238 AAGAGGCTAGATCAAGCGCG 60.249 55.000 0.00 0.00 43.74 6.86
771 787 1.079127 AAGCGCGCCAACACTCTAT 60.079 52.632 30.33 0.79 0.00 1.98
779 795 4.317839 CGCGCCAACACTCTATACATTTAC 60.318 45.833 0.00 0.00 0.00 2.01
859 875 3.630312 CGAACCTCCCAAAAGAAAAGACA 59.370 43.478 0.00 0.00 0.00 3.41
860 876 4.097286 CGAACCTCCCAAAAGAAAAGACAA 59.903 41.667 0.00 0.00 0.00 3.18
865 881 6.823182 ACCTCCCAAAAGAAAAGACAAAAATG 59.177 34.615 0.00 0.00 0.00 2.32
921 938 2.770164 ACTAAGACCACACCTCATGC 57.230 50.000 0.00 0.00 0.00 4.06
928 945 0.457166 CCACACCTCATGCGCAATTG 60.457 55.000 17.11 9.95 0.00 2.32
982 1001 3.605634 GCACCATTAAACCCCATTTTCC 58.394 45.455 0.00 0.00 0.00 3.13
1081 1104 2.031012 CACGCACAGAGCCAGGAA 59.969 61.111 0.00 0.00 41.38 3.36
1101 1124 1.852626 CCTCAAACCCACCTCCCCT 60.853 63.158 0.00 0.00 0.00 4.79
1124 1147 2.665000 CTTCTCGGCAAGCCTCCA 59.335 61.111 9.73 0.00 0.00 3.86
1147 1170 4.918201 CCAAGATCTCCCGGCGCC 62.918 72.222 19.07 19.07 0.00 6.53
1561 1585 1.217942 AGCAGTCTTTTTGGGGGAAGT 59.782 47.619 0.00 0.00 0.00 3.01
1589 1615 4.378459 GGTTTCATGTGAGGATTCGTCAAC 60.378 45.833 10.43 4.72 30.04 3.18
1590 1616 2.606108 TCATGTGAGGATTCGTCAACG 58.394 47.619 10.43 0.00 41.45 4.10
1639 1665 2.030007 CCACACATGGCTGGTGTTTTAG 60.030 50.000 11.18 2.35 46.75 1.85
1646 1672 1.202891 GGCTGGTGTTTTAGACAGGGT 60.203 52.381 0.00 0.00 39.39 4.34
1769 1925 5.697633 CCCTTGAAATTGTTCATTCTTGTGG 59.302 40.000 0.00 0.00 43.29 4.17
1770 1926 6.282930 CCTTGAAATTGTTCATTCTTGTGGT 58.717 36.000 0.00 0.00 43.29 4.16
2010 2180 0.737219 CCACTTGCTGATGCTAAGGC 59.263 55.000 0.00 0.00 40.48 4.35
2027 2197 3.197790 CCCCGAATCGCTGCAGTG 61.198 66.667 21.43 21.43 0.00 3.66
2163 2340 1.291877 CTTCTTGCGGTCCTGGTTCG 61.292 60.000 0.00 0.18 0.00 3.95
2311 2489 1.305930 GGAAGAACACCATGGCGACC 61.306 60.000 13.04 2.34 0.00 4.79
2523 2701 6.981722 AGCACTTGTTTTACCCTTTATCTTG 58.018 36.000 0.00 0.00 0.00 3.02
2575 2763 2.462889 GCTTGTTGATGTTGTGTGGTG 58.537 47.619 0.00 0.00 0.00 4.17
2617 2805 9.629878 TTTGGTGAGTAAATACCTTTTTCTACA 57.370 29.630 0.00 0.00 37.84 2.74
2695 2883 3.279434 GCATTTTGATACTCCCTCCGTT 58.721 45.455 0.00 0.00 0.00 4.44
2697 2885 4.513442 CATTTTGATACTCCCTCCGTTCA 58.487 43.478 0.00 0.00 0.00 3.18
2698 2886 3.604875 TTTGATACTCCCTCCGTTCAC 57.395 47.619 0.00 0.00 0.00 3.18
2699 2887 2.526888 TGATACTCCCTCCGTTCACT 57.473 50.000 0.00 0.00 0.00 3.41
2700 2888 2.816411 TGATACTCCCTCCGTTCACTT 58.184 47.619 0.00 0.00 0.00 3.16
2704 2892 5.424252 TGATACTCCCTCCGTTCACTTTTAT 59.576 40.000 0.00 0.00 0.00 1.40
2705 2893 6.608405 TGATACTCCCTCCGTTCACTTTTATA 59.392 38.462 0.00 0.00 0.00 0.98
2706 2894 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
2709 2897 6.117975 TCCCTCCGTTCACTTTTATAAGTT 57.882 37.500 0.00 0.00 41.85 2.66
2712 2900 6.206048 CCCTCCGTTCACTTTTATAAGTTGTT 59.794 38.462 0.00 0.00 41.85 2.83
2713 2901 7.255346 CCCTCCGTTCACTTTTATAAGTTGTTT 60.255 37.037 0.00 0.00 41.85 2.83
2714 2902 7.801783 CCTCCGTTCACTTTTATAAGTTGTTTC 59.198 37.037 0.00 0.00 41.85 2.78
2716 2904 8.339714 TCCGTTCACTTTTATAAGTTGTTTCAG 58.660 33.333 0.00 0.00 41.85 3.02
2717 2905 8.339714 CCGTTCACTTTTATAAGTTGTTTCAGA 58.660 33.333 0.00 0.00 41.85 3.27
2718 2906 9.155053 CGTTCACTTTTATAAGTTGTTTCAGAC 57.845 33.333 0.00 0.00 41.85 3.51
2719 2907 9.997482 GTTCACTTTTATAAGTTGTTTCAGACA 57.003 29.630 0.00 0.00 41.85 3.41
2744 2932 5.922544 ACTGAAAATGAGTTGCTTTGCATAC 59.077 36.000 0.00 0.00 38.76 2.39
2745 2933 6.088016 TGAAAATGAGTTGCTTTGCATACT 57.912 33.333 0.00 0.73 38.76 2.12
2747 2935 5.458041 AAATGAGTTGCTTTGCATACTGT 57.542 34.783 10.37 0.00 38.76 3.55
2748 2936 3.902261 TGAGTTGCTTTGCATACTGTG 57.098 42.857 10.37 0.00 38.76 3.66
2749 2937 3.213506 TGAGTTGCTTTGCATACTGTGT 58.786 40.909 10.37 0.00 38.76 3.72
2750 2938 3.003585 TGAGTTGCTTTGCATACTGTGTG 59.996 43.478 0.00 0.00 38.76 3.82
2752 2940 3.631686 AGTTGCTTTGCATACTGTGTGAA 59.368 39.130 8.84 0.00 38.76 3.18
2753 2941 4.097741 AGTTGCTTTGCATACTGTGTGAAA 59.902 37.500 8.84 0.81 38.76 2.69
2754 2942 4.852134 TGCTTTGCATACTGTGTGAAAT 57.148 36.364 8.84 0.00 31.71 2.17
2755 2943 4.548494 TGCTTTGCATACTGTGTGAAATG 58.452 39.130 8.84 7.63 31.71 2.32
2757 2945 4.618489 GCTTTGCATACTGTGTGAAATGTC 59.382 41.667 8.84 0.61 0.00 3.06
2759 2947 6.389830 TTTGCATACTGTGTGAAATGTCTT 57.610 33.333 8.84 0.00 0.00 3.01
2760 2948 5.611796 TGCATACTGTGTGAAATGTCTTC 57.388 39.130 8.84 0.00 0.00 2.87
2762 2950 5.530543 TGCATACTGTGTGAAATGTCTTCAA 59.469 36.000 8.84 0.00 0.00 2.69
2763 2951 5.853282 GCATACTGTGTGAAATGTCTTCAAC 59.147 40.000 8.84 0.00 0.00 3.18
2764 2952 4.536364 ACTGTGTGAAATGTCTTCAACG 57.464 40.909 0.00 0.00 0.00 4.10
2766 2954 2.032799 TGTGTGAAATGTCTTCAACGCC 59.967 45.455 0.00 0.00 0.00 5.68
2767 2955 2.290641 GTGTGAAATGTCTTCAACGCCT 59.709 45.455 0.00 0.00 0.00 5.52
2768 2956 2.948979 TGTGAAATGTCTTCAACGCCTT 59.051 40.909 0.00 0.00 0.00 4.35
2769 2957 4.024387 GTGTGAAATGTCTTCAACGCCTTA 60.024 41.667 0.00 0.00 0.00 2.69
2770 2958 4.759693 TGTGAAATGTCTTCAACGCCTTAT 59.240 37.500 0.00 0.00 0.00 1.73
2771 2959 5.935206 TGTGAAATGTCTTCAACGCCTTATA 59.065 36.000 0.00 0.00 0.00 0.98
2772 2960 6.428465 TGTGAAATGTCTTCAACGCCTTATAA 59.572 34.615 0.00 0.00 0.00 0.98
2773 2961 7.041030 TGTGAAATGTCTTCAACGCCTTATAAA 60.041 33.333 0.00 0.00 0.00 1.40
2774 2962 7.806014 GTGAAATGTCTTCAACGCCTTATAAAA 59.194 33.333 0.00 0.00 0.00 1.52
2775 2963 8.020819 TGAAATGTCTTCAACGCCTTATAAAAG 58.979 33.333 0.00 0.00 0.00 2.27
2776 2964 7.448748 AATGTCTTCAACGCCTTATAAAAGT 57.551 32.000 0.00 0.00 0.00 2.66
2779 2967 6.483974 TGTCTTCAACGCCTTATAAAAGTGAA 59.516 34.615 3.42 0.00 0.00 3.18
2780 2968 6.795593 GTCTTCAACGCCTTATAAAAGTGAAC 59.204 38.462 3.42 0.00 0.00 3.18
2781 2969 6.483974 TCTTCAACGCCTTATAAAAGTGAACA 59.516 34.615 3.42 0.00 0.00 3.18
2788 2976 5.944007 GCCTTATAAAAGTGAACAGAGGGAA 59.056 40.000 0.00 0.00 0.00 3.97
2823 3011 7.867921 TGGTTCCATAGATTGTAGTATTTGGT 58.132 34.615 0.00 0.00 0.00 3.67
2858 3047 8.462016 GGTCTTTAGTTCTAGTATTGACGGTTA 58.538 37.037 0.00 0.00 0.00 2.85
2883 3072 6.208994 ACCTCAGTTCGTCAAGAATAAGTACT 59.791 38.462 0.00 0.00 41.49 2.73
2884 3073 7.392673 ACCTCAGTTCGTCAAGAATAAGTACTA 59.607 37.037 0.00 0.00 41.49 1.82
2885 3074 7.697291 CCTCAGTTCGTCAAGAATAAGTACTAC 59.303 40.741 0.00 0.00 41.49 2.73
2886 3075 7.533426 TCAGTTCGTCAAGAATAAGTACTACC 58.467 38.462 0.00 0.00 41.49 3.18
2887 3076 7.392673 TCAGTTCGTCAAGAATAAGTACTACCT 59.607 37.037 0.00 0.00 41.49 3.08
2888 3077 7.697291 CAGTTCGTCAAGAATAAGTACTACCTC 59.303 40.741 0.00 0.00 41.49 3.85
2889 3078 6.690194 TCGTCAAGAATAAGTACTACCTCC 57.310 41.667 0.00 0.00 0.00 4.30
2890 3079 5.295292 TCGTCAAGAATAAGTACTACCTCCG 59.705 44.000 0.00 0.00 0.00 4.63
2891 3080 5.065731 CGTCAAGAATAAGTACTACCTCCGT 59.934 44.000 0.00 0.00 0.00 4.69
2892 3081 6.258727 CGTCAAGAATAAGTACTACCTCCGTA 59.741 42.308 0.00 0.00 0.00 4.02
2893 3082 7.201644 CGTCAAGAATAAGTACTACCTCCGTAA 60.202 40.741 0.00 0.00 0.00 3.18
2894 3083 8.462016 GTCAAGAATAAGTACTACCTCCGTAAA 58.538 37.037 0.00 0.00 0.00 2.01
2895 3084 8.462016 TCAAGAATAAGTACTACCTCCGTAAAC 58.538 37.037 0.00 0.00 0.00 2.01
2896 3085 7.944729 AGAATAAGTACTACCTCCGTAAACA 57.055 36.000 0.00 0.00 0.00 2.83
2897 3086 8.353423 AGAATAAGTACTACCTCCGTAAACAA 57.647 34.615 0.00 0.00 0.00 2.83
2898 3087 8.806146 AGAATAAGTACTACCTCCGTAAACAAA 58.194 33.333 0.00 0.00 0.00 2.83
2899 3088 9.591792 GAATAAGTACTACCTCCGTAAACAAAT 57.408 33.333 0.00 0.00 0.00 2.32
2907 3096 7.924947 ACTACCTCCGTAAACAAATATAAGAGC 59.075 37.037 0.00 0.00 0.00 4.09
2908 3097 5.751990 ACCTCCGTAAACAAATATAAGAGCG 59.248 40.000 0.00 0.00 0.00 5.03
2909 3098 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
2910 3099 6.257193 CCTCCGTAAACAAATATAAGAGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
2911 3100 7.201582 CCTCCGTAAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
2912 3101 8.700722 TCCGTAAACAAATATAAGAGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
2913 3102 8.810427 TCCGTAAACAAATATAAGAGCGTTTAG 58.190 33.333 0.00 0.00 31.53 1.85
2914 3103 8.810427 CCGTAAACAAATATAAGAGCGTTTAGA 58.190 33.333 0.00 0.00 31.53 2.10
2919 3108 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
2928 3117 9.900710 AAGAGCGTTTAGATCACTATATACTTG 57.099 33.333 0.00 0.00 37.82 3.16
2929 3118 9.069082 AGAGCGTTTAGATCACTATATACTTGT 57.931 33.333 0.00 0.00 37.82 3.16
2930 3119 9.680315 GAGCGTTTAGATCACTATATACTTGTT 57.320 33.333 0.00 0.00 34.89 2.83
2938 3127 8.794553 AGATCACTATATACTTGTTTACGGAGG 58.205 37.037 0.00 0.00 0.00 4.30
2939 3128 7.281040 TCACTATATACTTGTTTACGGAGGG 57.719 40.000 0.00 0.00 0.00 4.30
2940 3129 7.062322 TCACTATATACTTGTTTACGGAGGGA 58.938 38.462 0.00 0.00 0.00 4.20
2941 3130 7.727186 TCACTATATACTTGTTTACGGAGGGAT 59.273 37.037 0.00 0.00 0.00 3.85
2942 3131 8.365647 CACTATATACTTGTTTACGGAGGGATT 58.634 37.037 0.00 0.00 0.00 3.01
2943 3132 9.592196 ACTATATACTTGTTTACGGAGGGATTA 57.408 33.333 0.00 0.00 0.00 1.75
2944 3133 9.852091 CTATATACTTGTTTACGGAGGGATTAC 57.148 37.037 0.00 0.00 0.00 1.89
2966 3155 5.713025 ACCAGCTATTGTGCTTGTTTAATG 58.287 37.500 0.00 0.00 41.98 1.90
3023 3212 5.034152 GGATTACATAACATGGTTTGTGCG 58.966 41.667 16.08 0.00 38.99 5.34
3088 3278 7.063544 GTCTGTAGAAATGAGTTCACATGGTAC 59.936 40.741 0.00 0.00 38.86 3.34
3114 3306 6.959639 ACATTATTGTCCCATGTCATTACC 57.040 37.500 0.00 0.00 0.00 2.85
3624 3821 1.177401 GAAGTGTCTCATTTGGGCCC 58.823 55.000 17.59 17.59 0.00 5.80
3691 3889 7.869429 AGTGAAGATTTGGTAATTTCTTTGCTG 59.131 33.333 0.00 0.00 0.00 4.41
3741 3940 3.399440 TGGGAATGGTGCATGTTTTTC 57.601 42.857 0.00 0.00 0.00 2.29
3742 3941 2.038295 TGGGAATGGTGCATGTTTTTCC 59.962 45.455 0.00 0.00 33.45 3.13
4048 4247 1.241315 GGTCCCCACCATTTGTCGTG 61.241 60.000 0.00 0.00 43.17 4.35
4054 4253 1.600164 CCACCATTTGTCGTGTTGCAG 60.600 52.381 0.00 0.00 0.00 4.41
4559 4778 3.565905 ACTGCTTGCACTGCTTTATTC 57.434 42.857 11.48 0.00 0.00 1.75
4613 4832 6.650807 TGAAGCAAGTTAGGTCTGTTCTATTG 59.349 38.462 0.00 0.00 0.00 1.90
4690 4943 6.430000 ACATTGTCTTCTACATTTACCACACC 59.570 38.462 0.00 0.00 38.10 4.16
4705 4958 3.070590 ACCACACCAAGTACCACTAGTTC 59.929 47.826 0.00 0.00 0.00 3.01
4721 4974 7.041098 ACCACTAGTTCTTTGTGCTTAATTCAG 60.041 37.037 0.00 0.00 32.14 3.02
4738 4991 9.155053 CTTAATTCAGACTTGTAACGTGAAAAC 57.845 33.333 0.00 0.00 31.24 2.43
4739 4992 6.920569 ATTCAGACTTGTAACGTGAAAACT 57.079 33.333 0.00 0.00 31.24 2.66
4741 4994 6.102006 TCAGACTTGTAACGTGAAAACTTG 57.898 37.500 0.00 0.00 0.00 3.16
4747 5001 1.757682 AACGTGAAAACTTGCTCCCA 58.242 45.000 0.00 0.00 0.00 4.37
4814 5068 1.068816 CAAAAACGATGAACCCGGTCC 60.069 52.381 0.00 0.00 0.00 4.46
4830 5084 0.442699 GTCCGTTTCCTGTGATTCGC 59.557 55.000 0.00 0.00 0.00 4.70
4831 5085 0.034198 TCCGTTTCCTGTGATTCGCA 59.966 50.000 0.00 0.00 0.00 5.10
4832 5086 1.086696 CCGTTTCCTGTGATTCGCAT 58.913 50.000 0.00 0.00 0.00 4.73
4886 5140 6.655003 TGTGTGATGAGAAAGGGATTTACTTC 59.345 38.462 0.00 0.00 0.00 3.01
5008 5264 8.186178 ACTACTGCACTATTTTACTTTGATCG 57.814 34.615 0.00 0.00 0.00 3.69
5009 5265 5.869350 ACTGCACTATTTTACTTTGATCGC 58.131 37.500 0.00 0.00 0.00 4.58
5010 5266 4.892655 TGCACTATTTTACTTTGATCGCG 58.107 39.130 0.00 0.00 0.00 5.87
5011 5267 3.719352 GCACTATTTTACTTTGATCGCGC 59.281 43.478 0.00 0.00 0.00 6.86
5018 5274 3.982424 CTTTGATCGCGCCGTGTGC 62.982 63.158 0.00 0.03 35.52 4.57
5064 5320 1.801913 GTGCTCTGTCTGTACCGCG 60.802 63.158 0.00 0.00 0.00 6.46
5088 5345 2.887152 CTCTTTGTTTCTGGAGTTGGGG 59.113 50.000 0.00 0.00 0.00 4.96
5110 5367 1.875514 TGTCTGCTTGCATCTGTGTTC 59.124 47.619 0.00 0.00 0.00 3.18
5113 5370 1.236616 TGCTTGCATCTGTGTTCGGG 61.237 55.000 0.00 0.00 0.00 5.14
5177 5446 0.890683 GGTTGCTCCAAGGGTCATTG 59.109 55.000 0.00 0.00 35.97 2.82
5182 5451 0.883833 CTCCAAGGGTCATTGTGTGC 59.116 55.000 0.00 0.00 0.00 4.57
5184 5453 0.314935 CCAAGGGTCATTGTGTGCAC 59.685 55.000 10.75 10.75 0.00 4.57
5185 5454 0.040157 CAAGGGTCATTGTGTGCACG 60.040 55.000 13.13 0.00 0.00 5.34
5186 5455 1.795170 AAGGGTCATTGTGTGCACGC 61.795 55.000 23.40 23.40 0.00 5.34
5187 5456 2.551006 GGGTCATTGTGTGCACGCA 61.551 57.895 28.44 28.44 34.11 5.24
5188 5457 1.081906 GGTCATTGTGTGCACGCAG 60.082 57.895 29.91 20.81 37.69 5.18
5236 5524 0.692476 TGGATGTCTGGTGGTTGGAG 59.308 55.000 0.00 0.00 0.00 3.86
5263 5551 3.389329 ACATCAGGCCGTCATAATCTTCT 59.611 43.478 0.00 0.00 0.00 2.85
5276 5564 9.140286 CGTCATAATCTTCTTCTGTTTCTGTTA 57.860 33.333 0.00 0.00 0.00 2.41
5282 5570 9.832445 AATCTTCTTCTGTTTCTGTTACTGTTA 57.168 29.630 0.00 0.00 0.00 2.41
5294 5582 4.131596 TGTTACTGTTACTGTTCCAAGGC 58.868 43.478 0.00 0.00 0.00 4.35
5336 5632 1.021968 CTGGGTTAATAACTGCCGCC 58.978 55.000 2.96 0.00 0.00 6.13
5406 5702 0.388520 GATTCCTTTTGGCGTGTGGC 60.389 55.000 0.00 0.00 40.12 5.01
5420 5716 1.452833 GTGGCCTTCTCCATGCTCC 60.453 63.158 3.32 0.00 38.57 4.70
5426 5722 0.758123 CTTCTCCATGCTCCCCTCTC 59.242 60.000 0.00 0.00 0.00 3.20
5428 5724 1.074623 CTCCATGCTCCCCTCTCCT 60.075 63.158 0.00 0.00 0.00 3.69
5429 5725 0.189574 CTCCATGCTCCCCTCTCCTA 59.810 60.000 0.00 0.00 0.00 2.94
5434 5730 3.448934 CATGCTCCCCTCTCCTATACAT 58.551 50.000 0.00 0.00 0.00 2.29
5435 5731 3.176924 TGCTCCCCTCTCCTATACATC 57.823 52.381 0.00 0.00 0.00 3.06
5437 5733 3.096092 GCTCCCCTCTCCTATACATCTG 58.904 54.545 0.00 0.00 0.00 2.90
5438 5734 3.096092 CTCCCCTCTCCTATACATCTGC 58.904 54.545 0.00 0.00 0.00 4.26
5439 5735 2.450886 TCCCCTCTCCTATACATCTGCA 59.549 50.000 0.00 0.00 0.00 4.41
5440 5736 2.830923 CCCCTCTCCTATACATCTGCAG 59.169 54.545 7.63 7.63 0.00 4.41
5495 5798 4.494199 CCTGTTGGTTTCGATTCGAATAGC 60.494 45.833 21.09 19.17 45.28 2.97
5498 5801 2.199236 GGTTTCGATTCGAATAGCGGT 58.801 47.619 21.09 0.00 45.28 5.68
5508 5813 4.118093 TCGAATAGCGGTCTTGATTCAA 57.882 40.909 8.18 0.00 41.33 2.69
5560 5914 0.039618 TTCCCTTCACTTCCATGGGC 59.960 55.000 13.02 0.00 37.83 5.36
5569 5926 3.055021 TCACTTCCATGGGCGTTGTTATA 60.055 43.478 13.02 0.00 0.00 0.98
5599 5956 0.933097 CGCCATCATACTGTCTGTGC 59.067 55.000 0.00 0.00 0.00 4.57
5605 5962 2.426522 TCATACTGTCTGTGCAAAGGC 58.573 47.619 0.00 0.00 41.68 4.35
5732 6093 7.769970 TCAGTTTCAATTTCCATTTCTTTTGCT 59.230 29.630 0.00 0.00 0.00 3.91
5815 6177 1.053835 TTGATGCATAGAGGCCGGGA 61.054 55.000 2.18 0.00 0.00 5.14
5816 6178 0.837691 TGATGCATAGAGGCCGGGAT 60.838 55.000 2.18 0.00 0.00 3.85
5817 6179 1.195115 GATGCATAGAGGCCGGGATA 58.805 55.000 2.18 0.00 0.00 2.59
5818 6180 1.555075 GATGCATAGAGGCCGGGATAA 59.445 52.381 2.18 0.00 0.00 1.75
5819 6181 1.656587 TGCATAGAGGCCGGGATAAT 58.343 50.000 2.18 0.00 0.00 1.28
5820 6182 1.555075 TGCATAGAGGCCGGGATAATC 59.445 52.381 2.18 0.00 0.00 1.75
5821 6183 1.134371 GCATAGAGGCCGGGATAATCC 60.134 57.143 2.18 0.00 35.23 3.01
5822 6184 2.472029 CATAGAGGCCGGGATAATCCT 58.528 52.381 2.18 0.00 36.57 3.24
5823 6185 2.233305 TAGAGGCCGGGATAATCCTC 57.767 55.000 13.92 13.92 44.09 3.71
5824 6186 0.545548 AGAGGCCGGGATAATCCTCC 60.546 60.000 17.10 0.73 44.67 4.30
5825 6187 0.545548 GAGGCCGGGATAATCCTCCT 60.546 60.000 11.40 1.93 39.27 3.69
5826 6188 0.104409 AGGCCGGGATAATCCTCCTT 60.104 55.000 2.18 0.00 36.57 3.36
5827 6189 0.771755 GGCCGGGATAATCCTCCTTT 59.228 55.000 2.18 0.00 36.57 3.11
5828 6190 1.982958 GGCCGGGATAATCCTCCTTTA 59.017 52.381 2.18 0.00 36.57 1.85
5829 6191 2.374170 GGCCGGGATAATCCTCCTTTAA 59.626 50.000 2.18 0.00 36.57 1.52
5830 6192 3.559384 GGCCGGGATAATCCTCCTTTAAG 60.559 52.174 2.18 0.00 36.57 1.85
5831 6193 3.326880 GCCGGGATAATCCTCCTTTAAGA 59.673 47.826 2.18 0.00 36.57 2.10
5832 6194 4.202430 GCCGGGATAATCCTCCTTTAAGAA 60.202 45.833 2.18 0.00 36.57 2.52
5833 6195 5.689297 GCCGGGATAATCCTCCTTTAAGAAA 60.689 44.000 2.18 0.00 36.57 2.52
5876 6241 2.917227 GCTGTGGGGTGGGTTTGG 60.917 66.667 0.00 0.00 0.00 3.28
5878 6243 1.832167 CTGTGGGGTGGGTTTGGTG 60.832 63.158 0.00 0.00 0.00 4.17
5889 6254 1.003928 GGGTTTGGTGTAGTAGTGGGG 59.996 57.143 0.00 0.00 0.00 4.96
5926 6298 3.961477 TGTGGCGCACATGAATATTAC 57.039 42.857 10.83 0.00 39.62 1.89
5927 6299 3.540617 TGTGGCGCACATGAATATTACT 58.459 40.909 10.83 0.00 39.62 2.24
5928 6300 3.559655 TGTGGCGCACATGAATATTACTC 59.440 43.478 10.83 0.00 39.62 2.59
5929 6301 3.058914 GTGGCGCACATGAATATTACTCC 60.059 47.826 10.83 0.00 34.08 3.85
5930 6302 2.484264 GGCGCACATGAATATTACTCCC 59.516 50.000 10.83 0.00 0.00 4.30
5931 6303 3.403038 GCGCACATGAATATTACTCCCT 58.597 45.455 0.30 0.00 0.00 4.20
5932 6304 3.433615 GCGCACATGAATATTACTCCCTC 59.566 47.826 0.30 0.00 0.00 4.30
5933 6305 3.997021 CGCACATGAATATTACTCCCTCC 59.003 47.826 0.00 0.00 0.00 4.30
5934 6306 3.997021 GCACATGAATATTACTCCCTCCG 59.003 47.826 0.00 0.00 0.00 4.63
5935 6307 4.503296 GCACATGAATATTACTCCCTCCGT 60.503 45.833 0.00 0.00 0.00 4.69
5936 6308 5.611374 CACATGAATATTACTCCCTCCGTT 58.389 41.667 0.00 0.00 0.00 4.44
5937 6309 6.055588 CACATGAATATTACTCCCTCCGTTT 58.944 40.000 0.00 0.00 0.00 3.60
5938 6310 6.202954 CACATGAATATTACTCCCTCCGTTTC 59.797 42.308 0.00 0.00 0.00 2.78
5939 6311 6.099845 ACATGAATATTACTCCCTCCGTTTCT 59.900 38.462 0.00 0.00 0.00 2.52
5940 6312 7.289317 ACATGAATATTACTCCCTCCGTTTCTA 59.711 37.037 0.00 0.00 0.00 2.10
5941 6313 7.664552 TGAATATTACTCCCTCCGTTTCTAA 57.335 36.000 0.00 0.00 0.00 2.10
5942 6314 8.081517 TGAATATTACTCCCTCCGTTTCTAAA 57.918 34.615 0.00 0.00 0.00 1.85
5943 6315 8.711170 TGAATATTACTCCCTCCGTTTCTAAAT 58.289 33.333 0.00 0.00 0.00 1.40
5948 6320 8.726870 TTACTCCCTCCGTTTCTAAATATTTG 57.273 34.615 11.05 1.65 0.00 2.32
5949 6321 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
5950 6322 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
5951 6323 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
5952 6324 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
5953 6325 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
5954 6326 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
5955 6327 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
6026 6398 8.758633 TTAGAGTGTAGATTTACTCAGTTTGC 57.241 34.615 7.09 0.00 44.41 3.68
6027 6399 6.998802 AGAGTGTAGATTTACTCAGTTTGCT 58.001 36.000 7.09 0.00 44.41 3.91
6028 6400 7.093992 AGAGTGTAGATTTACTCAGTTTGCTC 58.906 38.462 7.09 0.00 44.41 4.26
6029 6401 6.166982 AGTGTAGATTTACTCAGTTTGCTCC 58.833 40.000 0.00 0.00 0.00 4.70
6030 6402 5.062308 GTGTAGATTTACTCAGTTTGCTCCG 59.938 44.000 0.00 0.00 0.00 4.63
6031 6403 4.273148 AGATTTACTCAGTTTGCTCCGT 57.727 40.909 0.00 0.00 0.00 4.69
6032 6404 5.401531 AGATTTACTCAGTTTGCTCCGTA 57.598 39.130 0.00 0.00 0.00 4.02
6033 6405 5.978814 AGATTTACTCAGTTTGCTCCGTAT 58.021 37.500 0.00 0.00 0.00 3.06
6034 6406 5.812642 AGATTTACTCAGTTTGCTCCGTATG 59.187 40.000 0.00 0.00 0.00 2.39
6035 6407 4.530710 TTACTCAGTTTGCTCCGTATGT 57.469 40.909 0.00 0.00 0.00 2.29
6036 6408 5.648178 TTACTCAGTTTGCTCCGTATGTA 57.352 39.130 0.00 0.00 0.00 2.29
6037 6409 4.111375 ACTCAGTTTGCTCCGTATGTAG 57.889 45.455 0.00 0.00 0.00 2.74
6038 6410 3.510360 ACTCAGTTTGCTCCGTATGTAGT 59.490 43.478 0.00 0.00 0.00 2.73
6039 6411 4.106029 TCAGTTTGCTCCGTATGTAGTC 57.894 45.455 0.00 0.00 0.00 2.59
6040 6412 3.508402 TCAGTTTGCTCCGTATGTAGTCA 59.492 43.478 0.00 0.00 0.00 3.41
6041 6413 3.612860 CAGTTTGCTCCGTATGTAGTCAC 59.387 47.826 0.00 0.00 0.00 3.67
6042 6414 3.510360 AGTTTGCTCCGTATGTAGTCACT 59.490 43.478 0.00 0.00 0.00 3.41
6043 6415 4.021368 AGTTTGCTCCGTATGTAGTCACTT 60.021 41.667 0.00 0.00 0.00 3.16
6044 6416 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
6045 6417 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
6046 6418 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
6047 6419 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
6048 6420 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
6049 6421 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
6050 6422 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
6051 6423 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
6052 6424 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
6053 6425 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
6054 6426 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
6055 6427 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
6056 6428 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
6057 6429 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
6058 6430 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
6059 6431 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
6060 6432 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
6061 6433 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
6062 6434 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
6063 6435 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
6064 6436 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
6065 6437 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
6066 6438 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
6067 6439 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
6068 6440 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
6069 6441 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
6070 6442 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
6071 6443 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
6072 6444 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
6074 6446 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
6075 6447 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
6076 6448 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
6077 6449 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
6078 6450 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
6079 6451 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
6080 6452 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
6081 6453 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
6082 6454 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
6083 6455 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
6084 6456 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
6085 6457 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
6086 6458 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
6087 6459 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
6088 6460 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
6089 6461 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
6090 6462 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
6091 6463 2.433662 AGGAACGGAGGGAGTAGTAC 57.566 55.000 0.00 0.00 0.00 2.73
6092 6464 1.020437 GGAACGGAGGGAGTAGTACG 58.980 60.000 0.00 0.00 0.00 3.67
6093 6465 1.680249 GGAACGGAGGGAGTAGTACGT 60.680 57.143 0.00 0.00 35.95 3.57
6094 6466 2.420129 GGAACGGAGGGAGTAGTACGTA 60.420 54.545 0.00 0.00 33.85 3.57
6095 6467 3.270877 GAACGGAGGGAGTAGTACGTAA 58.729 50.000 0.00 0.00 33.85 3.18
6096 6468 3.567478 ACGGAGGGAGTAGTACGTAAT 57.433 47.619 0.00 0.00 32.30 1.89
6097 6469 3.891049 ACGGAGGGAGTAGTACGTAATT 58.109 45.455 0.00 0.00 32.30 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.909302 ACAATAGTGGTCCACTGAGGG 59.091 52.381 31.23 19.99 45.01 4.30
171 172 2.551459 CTGCATGCTCCAAGTATTAGCC 59.449 50.000 20.33 0.00 35.33 3.93
324 325 2.954318 AGTGAACTGCTCAAATGTTGCT 59.046 40.909 0.00 0.00 35.22 3.91
362 363 2.493997 GTGAGTTTCTCAATCACGCG 57.506 50.000 3.53 3.53 42.46 6.01
372 373 0.657840 GCAGTTGCACGTGAGTTTCT 59.342 50.000 22.23 6.54 46.40 2.52
739 754 1.804372 CGCGCTTGATCTAGCCTCTTT 60.804 52.381 21.08 0.00 37.90 2.52
746 761 1.083806 TGTTGGCGCGCTTGATCTAG 61.084 55.000 32.29 0.00 0.00 2.43
779 795 9.855021 CTTTTGTAGGTGGTGGATATTTTAAAG 57.145 33.333 0.00 0.00 0.00 1.85
791 807 4.993029 TGTTTTCCTTTTGTAGGTGGTG 57.007 40.909 0.00 0.00 45.03 4.17
928 945 2.259511 CCCTTGGCTTTGCTTCGC 59.740 61.111 0.00 0.00 0.00 4.70
940 957 2.034066 TTTGCGAGGAGGCCCTTG 59.966 61.111 0.00 0.00 44.53 3.61
951 968 0.945099 TTAATGGTGCGTGTTTGCGA 59.055 45.000 0.00 0.00 37.81 5.10
982 1001 3.151022 GGAGGGGAGAGAGCACGG 61.151 72.222 0.00 0.00 0.00 4.94
1081 1104 1.726192 GGGGAGGTGGGTTTGAGGTT 61.726 60.000 0.00 0.00 0.00 3.50
1124 1147 1.839424 CCGGGAGATCTTGGCTTTTT 58.161 50.000 0.00 0.00 0.00 1.94
1537 1561 0.593128 CCCCAAAAAGACTGCTCACG 59.407 55.000 0.00 0.00 0.00 4.35
1561 1585 3.541242 ATCCTCACATGAAACCCCAAA 57.459 42.857 0.00 0.00 0.00 3.28
1589 1615 6.998258 AGAAAATCAAATTCAGCAAACTCG 57.002 33.333 0.00 0.00 0.00 4.18
1590 1616 7.654923 AGGAAGAAAATCAAATTCAGCAAACTC 59.345 33.333 0.00 0.00 0.00 3.01
1639 1665 1.470051 AACCACACACAAACCCTGTC 58.530 50.000 0.00 0.00 35.47 3.51
1646 1672 2.560542 AGAGCAACAAACCACACACAAA 59.439 40.909 0.00 0.00 0.00 2.83
1782 1939 2.809696 CGTAACGGAAACTGGGAAATGT 59.190 45.455 0.00 0.00 0.00 2.71
1783 1940 2.809696 ACGTAACGGAAACTGGGAAATG 59.190 45.455 0.00 0.00 0.00 2.32
1797 1964 7.989405 CGATCTGCTAAAACTTATTACGTAACG 59.011 37.037 10.81 4.94 0.00 3.18
1942 2112 2.186160 CACAGCCAACAAGGACGCA 61.186 57.895 0.00 0.00 41.22 5.24
2010 2180 3.197790 CACTGCAGCGATTCGGGG 61.198 66.667 15.27 0.00 0.00 5.73
2027 2197 1.000145 GCGCACTGGCTAACTAACTC 59.000 55.000 0.30 0.00 38.10 3.01
2132 2304 3.323979 ACCGCAAGAAGATACCGGATTAT 59.676 43.478 9.46 0.00 41.34 1.28
2311 2489 2.941720 GCTTCTGGGAGCAGATAAGTTG 59.058 50.000 0.00 0.00 42.25 3.16
2357 2535 1.198759 AGGCAATCCGGTACTGGTGT 61.199 55.000 20.40 8.00 37.47 4.16
2523 2701 1.106285 CCCAAGCAATAACAGAGCCC 58.894 55.000 0.00 0.00 0.00 5.19
2617 2805 3.577848 TGCATCTGCCCAAGTAAAAATGT 59.422 39.130 0.00 0.00 41.18 2.71
2719 2907 4.757594 TGCAAAGCAACTCATTTTCAGTT 58.242 34.783 0.00 0.00 34.76 3.16
2721 2909 6.089016 CAGTATGCAAAGCAACTCATTTTCAG 59.911 38.462 0.00 0.00 43.62 3.02
2722 2910 5.921976 CAGTATGCAAAGCAACTCATTTTCA 59.078 36.000 0.00 0.00 43.62 2.69
2723 2911 5.922544 ACAGTATGCAAAGCAACTCATTTTC 59.077 36.000 0.00 0.00 43.62 2.29
2725 2913 5.221303 ACACAGTATGCAAAGCAACTCATTT 60.221 36.000 0.00 0.00 43.62 2.32
2726 2914 4.279169 ACACAGTATGCAAAGCAACTCATT 59.721 37.500 0.00 0.00 43.62 2.57
2727 2915 3.822735 ACACAGTATGCAAAGCAACTCAT 59.177 39.130 0.00 0.00 43.62 2.90
2728 2916 3.003585 CACACAGTATGCAAAGCAACTCA 59.996 43.478 0.00 0.00 43.62 3.41
2731 2919 3.624326 TCACACAGTATGCAAAGCAAC 57.376 42.857 0.00 0.00 43.62 4.17
2732 2920 4.645762 TTTCACACAGTATGCAAAGCAA 57.354 36.364 0.00 0.00 43.62 3.91
2734 2922 4.549458 ACATTTCACACAGTATGCAAAGC 58.451 39.130 0.00 0.00 42.53 3.51
2735 2923 6.005583 AGACATTTCACACAGTATGCAAAG 57.994 37.500 0.00 0.00 42.53 2.77
2736 2924 6.039159 TGAAGACATTTCACACAGTATGCAAA 59.961 34.615 0.00 0.00 42.53 3.68
2737 2925 5.530543 TGAAGACATTTCACACAGTATGCAA 59.469 36.000 0.00 0.00 42.53 4.08
2739 2927 5.611796 TGAAGACATTTCACACAGTATGC 57.388 39.130 0.00 0.00 42.53 3.14
2744 2932 3.291585 GCGTTGAAGACATTTCACACAG 58.708 45.455 0.00 0.00 0.00 3.66
2745 2933 2.032799 GGCGTTGAAGACATTTCACACA 59.967 45.455 0.00 0.00 0.00 3.72
2747 2935 2.571212 AGGCGTTGAAGACATTTCACA 58.429 42.857 0.00 0.00 0.00 3.58
2748 2936 3.626028 AAGGCGTTGAAGACATTTCAC 57.374 42.857 0.00 0.00 0.00 3.18
2749 2937 7.441890 TTTATAAGGCGTTGAAGACATTTCA 57.558 32.000 0.97 0.00 0.00 2.69
2750 2938 8.021396 ACTTTTATAAGGCGTTGAAGACATTTC 58.979 33.333 0.97 0.00 35.61 2.17
2752 2940 7.174253 TCACTTTTATAAGGCGTTGAAGACATT 59.826 33.333 0.97 0.00 35.61 2.71
2753 2941 6.653320 TCACTTTTATAAGGCGTTGAAGACAT 59.347 34.615 0.97 0.00 35.61 3.06
2754 2942 5.992829 TCACTTTTATAAGGCGTTGAAGACA 59.007 36.000 0.97 0.00 35.61 3.41
2755 2943 6.476243 TCACTTTTATAAGGCGTTGAAGAC 57.524 37.500 0.97 0.00 35.61 3.01
2757 2945 6.664515 TGTTCACTTTTATAAGGCGTTGAAG 58.335 36.000 0.97 3.87 35.61 3.02
2759 2947 5.992829 TCTGTTCACTTTTATAAGGCGTTGA 59.007 36.000 0.97 0.00 35.61 3.18
2760 2948 6.236017 TCTGTTCACTTTTATAAGGCGTTG 57.764 37.500 0.97 0.00 35.61 4.10
2762 2950 4.935808 CCTCTGTTCACTTTTATAAGGCGT 59.064 41.667 0.00 0.00 35.61 5.68
2763 2951 4.332819 CCCTCTGTTCACTTTTATAAGGCG 59.667 45.833 0.00 0.00 35.61 5.52
2764 2952 5.497474 TCCCTCTGTTCACTTTTATAAGGC 58.503 41.667 0.00 0.00 35.61 4.35
2766 2954 9.892130 AGTATTCCCTCTGTTCACTTTTATAAG 57.108 33.333 0.00 0.00 37.40 1.73
2773 2961 9.838339 CATATTTAGTATTCCCTCTGTTCACTT 57.162 33.333 0.00 0.00 0.00 3.16
2774 2962 8.432805 CCATATTTAGTATTCCCTCTGTTCACT 58.567 37.037 0.00 0.00 0.00 3.41
2775 2963 8.211629 ACCATATTTAGTATTCCCTCTGTTCAC 58.788 37.037 0.00 0.00 0.00 3.18
2776 2964 8.331931 ACCATATTTAGTATTCCCTCTGTTCA 57.668 34.615 0.00 0.00 0.00 3.18
2779 2967 7.349859 TGGAACCATATTTAGTATTCCCTCTGT 59.650 37.037 0.00 0.00 0.00 3.41
2780 2968 7.745717 TGGAACCATATTTAGTATTCCCTCTG 58.254 38.462 0.00 0.00 0.00 3.35
2781 2969 7.947782 TGGAACCATATTTAGTATTCCCTCT 57.052 36.000 0.00 0.00 0.00 3.69
2858 3047 5.470047 ACTTATTCTTGACGAACTGAGGT 57.530 39.130 0.00 0.00 33.72 3.85
2883 3072 6.919662 CGCTCTTATATTTGTTTACGGAGGTA 59.080 38.462 0.00 0.00 0.00 3.08
2884 3073 5.751990 CGCTCTTATATTTGTTTACGGAGGT 59.248 40.000 0.00 0.00 0.00 3.85
2885 3074 5.751990 ACGCTCTTATATTTGTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
2886 3075 6.823678 ACGCTCTTATATTTGTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
2887 3076 7.599630 AAACGCTCTTATATTTGTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
2888 3077 8.810427 TCTAAACGCTCTTATATTTGTTTACGG 58.190 33.333 0.00 0.00 32.41 4.02
2893 3082 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
2902 3091 9.900710 CAAGTATATAGTGATCTAAACGCTCTT 57.099 33.333 0.00 0.00 0.00 2.85
2903 3092 9.069082 ACAAGTATATAGTGATCTAAACGCTCT 57.931 33.333 0.00 0.00 0.00 4.09
2904 3093 9.680315 AACAAGTATATAGTGATCTAAACGCTC 57.320 33.333 0.00 0.00 0.00 5.03
2912 3101 8.794553 CCTCCGTAAACAAGTATATAGTGATCT 58.205 37.037 0.00 0.00 0.00 2.75
2913 3102 8.027771 CCCTCCGTAAACAAGTATATAGTGATC 58.972 40.741 0.00 0.00 0.00 2.92
2914 3103 7.727186 TCCCTCCGTAAACAAGTATATAGTGAT 59.273 37.037 0.00 0.00 0.00 3.06
2915 3104 7.062322 TCCCTCCGTAAACAAGTATATAGTGA 58.938 38.462 0.00 0.00 0.00 3.41
2916 3105 7.281040 TCCCTCCGTAAACAAGTATATAGTG 57.719 40.000 0.00 0.00 0.00 2.74
2917 3106 8.488308 AATCCCTCCGTAAACAAGTATATAGT 57.512 34.615 0.00 0.00 0.00 2.12
2918 3107 9.852091 GTAATCCCTCCGTAAACAAGTATATAG 57.148 37.037 0.00 0.00 0.00 1.31
2919 3108 8.806146 GGTAATCCCTCCGTAAACAAGTATATA 58.194 37.037 0.00 0.00 0.00 0.86
2920 3109 7.290714 TGGTAATCCCTCCGTAAACAAGTATAT 59.709 37.037 0.00 0.00 0.00 0.86
2921 3110 6.610830 TGGTAATCCCTCCGTAAACAAGTATA 59.389 38.462 0.00 0.00 0.00 1.47
2922 3111 5.426185 TGGTAATCCCTCCGTAAACAAGTAT 59.574 40.000 0.00 0.00 0.00 2.12
2923 3112 4.776837 TGGTAATCCCTCCGTAAACAAGTA 59.223 41.667 0.00 0.00 0.00 2.24
2924 3113 3.583966 TGGTAATCCCTCCGTAAACAAGT 59.416 43.478 0.00 0.00 0.00 3.16
2925 3114 4.189231 CTGGTAATCCCTCCGTAAACAAG 58.811 47.826 0.00 0.00 0.00 3.16
2926 3115 3.620472 GCTGGTAATCCCTCCGTAAACAA 60.620 47.826 0.00 0.00 0.00 2.83
2927 3116 2.093341 GCTGGTAATCCCTCCGTAAACA 60.093 50.000 0.00 0.00 0.00 2.83
2928 3117 2.169978 AGCTGGTAATCCCTCCGTAAAC 59.830 50.000 0.00 0.00 0.00 2.01
2929 3118 2.474112 AGCTGGTAATCCCTCCGTAAA 58.526 47.619 0.00 0.00 0.00 2.01
2930 3119 2.170012 AGCTGGTAATCCCTCCGTAA 57.830 50.000 0.00 0.00 0.00 3.18
2931 3120 3.537795 ATAGCTGGTAATCCCTCCGTA 57.462 47.619 0.00 0.00 0.00 4.02
2932 3121 2.368875 CAATAGCTGGTAATCCCTCCGT 59.631 50.000 0.00 0.00 0.00 4.69
2933 3122 2.368875 ACAATAGCTGGTAATCCCTCCG 59.631 50.000 0.00 0.00 0.00 4.63
2934 3123 3.744660 CACAATAGCTGGTAATCCCTCC 58.255 50.000 0.00 0.00 0.00 4.30
2935 3124 3.142174 GCACAATAGCTGGTAATCCCTC 58.858 50.000 0.00 0.00 0.00 4.30
2936 3125 2.780010 AGCACAATAGCTGGTAATCCCT 59.220 45.455 0.00 0.00 44.66 4.20
2937 3126 3.214696 AGCACAATAGCTGGTAATCCC 57.785 47.619 0.00 0.00 44.66 3.85
2938 3127 3.947834 ACAAGCACAATAGCTGGTAATCC 59.052 43.478 0.00 0.00 46.70 3.01
2944 3133 5.713025 ACATTAAACAAGCACAATAGCTGG 58.287 37.500 0.00 0.00 45.89 4.85
2966 3155 4.991687 CAGTCCAGAAAGTTGAGACCTTAC 59.008 45.833 0.00 0.00 0.00 2.34
3023 3212 1.745653 GGTGTTTCTAAGGCTGCATCC 59.254 52.381 0.00 0.00 0.00 3.51
3114 3306 4.821805 TGAAAAGAAGTCCAACTAAGGCTG 59.178 41.667 0.00 0.00 0.00 4.85
3504 3696 2.093181 AGGGTGTACGCATATGCAGAAA 60.093 45.455 26.52 6.56 42.21 2.52
3517 3709 0.893727 CACAAGGGGCAAGGGTGTAC 60.894 60.000 0.00 0.00 0.00 2.90
3624 3821 8.090214 AGTTTTCAGTAACCATCCAAATCAATG 58.910 33.333 0.00 0.00 0.00 2.82
4048 4247 2.413371 GCCAATCTCTTTCGACTGCAAC 60.413 50.000 0.00 0.00 0.00 4.17
4054 4253 0.729690 GGCTGCCAATCTCTTTCGAC 59.270 55.000 15.17 0.00 0.00 4.20
4613 4832 5.775701 ACATAGATATGTAGGTCCCACAGTC 59.224 44.000 3.66 0.00 44.54 3.51
4690 4943 5.057149 AGCACAAAGAACTAGTGGTACTTG 58.943 41.667 0.00 0.00 41.61 3.16
4705 4958 7.321271 CGTTACAAGTCTGAATTAAGCACAAAG 59.679 37.037 0.00 0.00 0.00 2.77
4721 4974 4.905269 AGCAAGTTTTCACGTTACAAGTC 58.095 39.130 0.00 0.00 0.00 3.01
4738 4991 1.538950 GAGCTGAAAAGTGGGAGCAAG 59.461 52.381 0.00 0.00 33.67 4.01
4739 4992 1.609208 GAGCTGAAAAGTGGGAGCAA 58.391 50.000 0.00 0.00 33.67 3.91
4741 4994 1.301677 CGGAGCTGAAAAGTGGGAGC 61.302 60.000 0.00 0.00 0.00 4.70
4747 5001 1.003233 GCCCTCGGAGCTGAAAAGT 60.003 57.895 0.00 0.00 0.00 2.66
4776 5030 4.519540 TTTGCTATTTCTGGTTCTTGCC 57.480 40.909 0.00 0.00 0.00 4.52
4814 5068 1.731709 TGATGCGAATCACAGGAAACG 59.268 47.619 0.51 0.00 0.00 3.60
5010 5266 1.234615 AACCACATACAGCACACGGC 61.235 55.000 0.00 0.00 45.30 5.68
5011 5267 1.069296 CAAACCACATACAGCACACGG 60.069 52.381 0.00 0.00 0.00 4.94
5018 5274 0.874390 ACAGCGCAAACCACATACAG 59.126 50.000 11.47 0.00 0.00 2.74
5064 5320 4.036852 CCCAACTCCAGAAACAAAGAGTTC 59.963 45.833 1.44 0.00 45.37 3.01
5088 5345 1.605710 ACACAGATGCAAGCAGACAAC 59.394 47.619 0.00 0.00 0.00 3.32
5110 5367 0.237498 GAAAGCAACGTTCTTCCCCG 59.763 55.000 0.00 0.00 0.00 5.73
5113 5370 3.251004 ACAGATGAAAGCAACGTTCTTCC 59.749 43.478 0.00 0.00 32.35 3.46
5185 5454 1.495584 TTTGACGGTTCTGCGTCTGC 61.496 55.000 0.00 0.00 43.20 4.26
5186 5455 0.232303 GTTTGACGGTTCTGCGTCTG 59.768 55.000 0.00 0.00 36.25 3.51
5187 5456 1.213094 CGTTTGACGGTTCTGCGTCT 61.213 55.000 0.00 0.00 38.08 4.18
5188 5457 1.200839 CGTTTGACGGTTCTGCGTC 59.799 57.895 0.00 0.00 38.08 5.19
5236 5524 0.107456 ATGACGGCCTGATGTGATCC 59.893 55.000 0.00 0.00 0.00 3.36
5263 5551 7.279313 GGAACAGTAACAGTAACAGAAACAGAA 59.721 37.037 0.00 0.00 0.00 3.02
5276 5564 2.949644 GTTGCCTTGGAACAGTAACAGT 59.050 45.455 0.00 0.00 42.39 3.55
5282 5570 0.395586 TGCAGTTGCCTTGGAACAGT 60.396 50.000 1.06 0.00 39.49 3.55
5336 5632 1.569493 CTGGGTTTTCAGACGCACG 59.431 57.895 0.00 0.00 37.53 5.34
5341 5637 0.536460 TTCCGGCTGGGTTTTCAGAC 60.536 55.000 12.87 0.00 39.35 3.51
5366 5662 1.198713 AGGACCATCTACCACTGCTG 58.801 55.000 0.00 0.00 0.00 4.41
5406 5702 0.693767 AGAGGGGAGCATGGAGAAGG 60.694 60.000 0.00 0.00 0.00 3.46
5414 5710 3.339436 AGATGTATAGGAGAGGGGAGCAT 59.661 47.826 0.00 0.00 0.00 3.79
5420 5716 2.233431 GCTGCAGATGTATAGGAGAGGG 59.767 54.545 20.43 0.00 0.00 4.30
5452 5750 0.387239 GTTTCGCAGTTGCATCACCC 60.387 55.000 4.84 0.00 42.21 4.61
5485 5788 4.693283 TGAATCAAGACCGCTATTCGAAT 58.307 39.130 16.15 16.15 41.67 3.34
5495 5798 6.025896 CACTGATTGAATTGAATCAAGACCG 58.974 40.000 18.95 10.81 42.21 4.79
5498 5801 6.829229 AGCACTGATTGAATTGAATCAAGA 57.171 33.333 18.95 0.00 42.21 3.02
5508 5813 6.942576 ACTACTAACCAAAGCACTGATTGAAT 59.057 34.615 0.00 0.00 0.00 2.57
5550 5894 3.541632 AGTATAACAACGCCCATGGAAG 58.458 45.455 15.22 9.21 0.00 3.46
5560 5914 3.726782 GCGCCAGGAAAAGTATAACAACG 60.727 47.826 0.00 0.00 0.00 4.10
5569 5926 0.323725 ATGATGGCGCCAGGAAAAGT 60.324 50.000 35.36 16.61 0.00 2.66
5599 5956 1.308783 GGAAGCCTCTTCCGCCTTTG 61.309 60.000 9.56 0.00 0.00 2.77
5605 5962 0.606401 TTGCAAGGAAGCCTCTTCCG 60.606 55.000 17.10 7.73 43.23 4.30
5707 6067 7.853929 CAGCAAAAGAAATGGAAATTGAAACTG 59.146 33.333 0.00 0.00 0.00 3.16
5708 6068 7.467675 GCAGCAAAAGAAATGGAAATTGAAACT 60.468 33.333 0.00 0.00 0.00 2.66
5709 6069 6.634035 GCAGCAAAAGAAATGGAAATTGAAAC 59.366 34.615 0.00 0.00 0.00 2.78
5710 6070 6.238703 GGCAGCAAAAGAAATGGAAATTGAAA 60.239 34.615 0.00 0.00 0.00 2.69
5713 6073 4.083164 GGGCAGCAAAAGAAATGGAAATTG 60.083 41.667 0.00 0.00 0.00 2.32
5714 6074 4.074259 GGGCAGCAAAAGAAATGGAAATT 58.926 39.130 0.00 0.00 0.00 1.82
5725 6086 6.746745 AATTAATCAATTGGGCAGCAAAAG 57.253 33.333 5.42 0.00 33.01 2.27
5729 6090 8.016301 TGTAATAATTAATCAATTGGGCAGCA 57.984 30.769 5.42 0.00 35.88 4.41
5848 6210 1.308998 CCCCACAGCGGCTAAAATAG 58.691 55.000 0.26 0.00 0.00 1.73
5876 6241 1.636148 TCACACCCCCACTACTACAC 58.364 55.000 0.00 0.00 0.00 2.90
5878 6243 2.835764 TCAATCACACCCCCACTACTAC 59.164 50.000 0.00 0.00 0.00 2.73
5889 6254 5.451908 CGCCACATAATTATCAATCACACC 58.548 41.667 0.00 0.00 0.00 4.16
5926 6298 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
5927 6299 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
5928 6300 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
5929 6301 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
6000 6372 9.204570 GCAAACTGAGTAAATCTACACTCTAAA 57.795 33.333 3.65 0.00 41.46 1.85
6001 6373 8.585881 AGCAAACTGAGTAAATCTACACTCTAA 58.414 33.333 3.65 0.00 41.46 2.10
6002 6374 8.123639 AGCAAACTGAGTAAATCTACACTCTA 57.876 34.615 3.65 0.00 41.46 2.43
6003 6375 6.998802 AGCAAACTGAGTAAATCTACACTCT 58.001 36.000 3.65 0.00 41.46 3.24
6004 6376 6.311690 GGAGCAAACTGAGTAAATCTACACTC 59.688 42.308 0.00 0.00 41.31 3.51
6005 6377 6.166982 GGAGCAAACTGAGTAAATCTACACT 58.833 40.000 0.00 0.00 0.00 3.55
6006 6378 5.062308 CGGAGCAAACTGAGTAAATCTACAC 59.938 44.000 0.00 0.00 0.00 2.90
6007 6379 5.168569 CGGAGCAAACTGAGTAAATCTACA 58.831 41.667 0.00 0.00 0.00 2.74
6008 6380 5.169295 ACGGAGCAAACTGAGTAAATCTAC 58.831 41.667 0.00 0.00 0.00 2.59
6009 6381 5.401531 ACGGAGCAAACTGAGTAAATCTA 57.598 39.130 0.00 0.00 0.00 1.98
6010 6382 4.273148 ACGGAGCAAACTGAGTAAATCT 57.727 40.909 0.00 0.00 0.00 2.40
6011 6383 5.581085 ACATACGGAGCAAACTGAGTAAATC 59.419 40.000 0.00 0.00 0.00 2.17
6012 6384 5.488341 ACATACGGAGCAAACTGAGTAAAT 58.512 37.500 0.00 0.00 0.00 1.40
6013 6385 4.890088 ACATACGGAGCAAACTGAGTAAA 58.110 39.130 0.00 0.00 0.00 2.01
6014 6386 4.530710 ACATACGGAGCAAACTGAGTAA 57.469 40.909 0.00 0.00 0.00 2.24
6015 6387 4.703575 ACTACATACGGAGCAAACTGAGTA 59.296 41.667 0.00 0.00 0.00 2.59
6016 6388 3.510360 ACTACATACGGAGCAAACTGAGT 59.490 43.478 0.00 0.00 0.00 3.41
6017 6389 4.106197 GACTACATACGGAGCAAACTGAG 58.894 47.826 0.00 0.00 0.00 3.35
6018 6390 3.508402 TGACTACATACGGAGCAAACTGA 59.492 43.478 0.00 0.00 0.00 3.41
6019 6391 3.612860 GTGACTACATACGGAGCAAACTG 59.387 47.826 0.00 0.00 0.00 3.16
6020 6392 3.510360 AGTGACTACATACGGAGCAAACT 59.490 43.478 0.00 0.00 0.00 2.66
6021 6393 3.846360 AGTGACTACATACGGAGCAAAC 58.154 45.455 0.00 0.00 0.00 2.93
6022 6394 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
6023 6395 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
6024 6396 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
6025 6397 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
6026 6398 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
6027 6399 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
6028 6400 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
6029 6401 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
6030 6402 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
6031 6403 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
6032 6404 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
6033 6405 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
6034 6406 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
6035 6407 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
6036 6408 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
6037 6409 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
6038 6410 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
6039 6411 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
6040 6412 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
6041 6413 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
6042 6414 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
6043 6415 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
6044 6416 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
6045 6417 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
6046 6418 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
6048 6420 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
6049 6421 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
6050 6422 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
6051 6423 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
6052 6424 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
6053 6425 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
6054 6426 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
6055 6427 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
6056 6428 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
6057 6429 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
6058 6430 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
6059 6431 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
6060 6432 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
6061 6433 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
6062 6434 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
6063 6435 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
6064 6436 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
6065 6437 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
6066 6438 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
6067 6439 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
6068 6440 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
6069 6441 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
6070 6442 3.682718 CGTACTACTCCCTCCGTTCCTAA 60.683 52.174 0.00 0.00 0.00 2.69
6071 6443 2.158900 CGTACTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
6072 6444 1.407989 CGTACTACTCCCTCCGTTCCT 60.408 57.143 0.00 0.00 0.00 3.36
6073 6445 1.020437 CGTACTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 0.00 3.62
6074 6446 1.743996 ACGTACTACTCCCTCCGTTC 58.256 55.000 0.00 0.00 0.00 3.95
6075 6447 3.350219 TTACGTACTACTCCCTCCGTT 57.650 47.619 0.00 0.00 0.00 4.44
6076 6448 3.567478 ATTACGTACTACTCCCTCCGT 57.433 47.619 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.