Multiple sequence alignment - TraesCS7D01G338800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G338800 chr7D 100.000 5514 0 0 1 5514 432938174 432943687 0.000000e+00 10183.0
1 TraesCS7D01G338800 chr7B 93.188 5123 187 56 4 5033 449792401 449787348 0.000000e+00 7378.0
2 TraesCS7D01G338800 chr7A 94.634 3112 123 15 1803 4893 500128503 500125415 0.000000e+00 4782.0
3 TraesCS7D01G338800 chr7A 80.918 1677 141 94 223 1767 500130280 500128651 0.000000e+00 1158.0
4 TraesCS7D01G338800 chr7A 93.333 75 4 1 4959 5033 499894577 499894504 5.840000e-20 110.0
5 TraesCS7D01G338800 chr7A 92.000 75 5 1 4959 5033 499842271 499842198 2.720000e-18 104.0
6 TraesCS7D01G338800 chr7A 97.222 36 1 0 4895 4930 500125398 500125363 1.660000e-05 62.1
7 TraesCS7D01G338800 chr4D 93.272 327 16 3 5034 5355 502633387 502633062 1.390000e-130 477.0
8 TraesCS7D01G338800 chr4D 92.705 329 18 3 5034 5356 160734637 160734965 2.330000e-128 470.0
9 TraesCS7D01G338800 chr4D 94.194 310 11 4 5052 5355 20532211 20532519 3.010000e-127 466.0
10 TraesCS7D01G338800 chr4D 92.262 336 14 5 5023 5353 298120703 298121031 3.010000e-127 466.0
11 TraesCS7D01G338800 chr4D 92.923 325 14 3 5034 5353 57767040 57766720 1.080000e-126 464.0
12 TraesCS7D01G338800 chr4D 91.520 342 20 4 5026 5362 431039615 431039952 3.890000e-126 462.0
13 TraesCS7D01G338800 chr2D 94.175 309 12 3 5052 5354 569200150 569200458 3.010000e-127 466.0
14 TraesCS7D01G338800 chr2D 92.607 257 11 6 5106 5356 121503796 121503542 4.060000e-96 363.0
15 TraesCS7D01G338800 chr6D 91.988 337 16 3 5032 5357 148479226 148478890 3.890000e-126 462.0
16 TraesCS7D01G338800 chr2B 92.073 328 20 3 5034 5355 217412750 217412423 1.810000e-124 457.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G338800 chr7D 432938174 432943687 5513 False 10183.0 10183 100.000000 1 5514 1 chr7D.!!$F1 5513
1 TraesCS7D01G338800 chr7B 449787348 449792401 5053 True 7378.0 7378 93.188000 4 5033 1 chr7B.!!$R1 5029
2 TraesCS7D01G338800 chr7A 500125363 500130280 4917 True 2000.7 4782 90.924667 223 4930 3 chr7A.!!$R3 4707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 369 0.034574 TTTCACACCAGTGGCTGTGT 60.035 50.0 28.64 17.46 45.91 3.72 F
1440 1541 0.034896 CAACTAGGCACGGTGGTCTT 59.965 55.0 10.60 0.00 0.00 3.01 F
1704 1848 0.035458 CCTGGGAAGCGTGAAGAACT 59.965 55.0 0.00 0.00 0.00 3.01 F
2063 2369 0.323178 ATCTGCTGGGGTCTGCAAAG 60.323 55.0 0.00 0.00 45.02 2.77 F
3499 3805 0.549950 ATGAGAGCTGGGTGATTGGG 59.450 55.0 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2548 1.003718 GGCGGTCTGGTAAAGCACT 60.004 57.895 0.00 0.00 0.00 4.40 R
2623 2929 0.100682 CACGATACACCGTCTCCAGG 59.899 60.000 0.00 0.00 41.29 4.45 R
3613 3919 0.319900 GCAGACGTGAAAGGAGCTCA 60.320 55.000 17.19 0.00 0.00 4.26 R
3940 4246 1.202734 ACTGCAGTGCTGACATGAGTT 60.203 47.619 26.56 0.52 0.00 3.01 R
5450 5785 0.039165 GCCGCCAAACAAAAGAGAGG 60.039 55.000 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.014352 GTGCTGGTCAAAACGAGTGT 58.986 50.000 0.00 0.00 34.03 3.55
109 111 4.012374 ACGATTCCACATGCTTTCTTCAT 58.988 39.130 0.00 0.00 0.00 2.57
142 144 1.064389 CAACCATTCTCCCTTCCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
154 157 0.606604 TTCCTCCCCGAAGAGAAACG 59.393 55.000 3.50 0.00 35.82 3.60
235 238 1.079503 AAAAGGCACGATCGCTTCTC 58.920 50.000 16.60 0.64 0.00 2.87
262 265 6.539464 GGGTCGAGAATAGATACGATCATACT 59.461 42.308 0.00 0.00 37.57 2.12
266 269 7.434602 TCGAGAATAGATACGATCATACTACGG 59.565 40.741 0.00 0.00 0.00 4.02
286 289 1.577328 CGCAGTTTCCGAGGCATGTT 61.577 55.000 0.00 0.00 0.00 2.71
314 317 1.895051 AATGCGCAAAATAGTCGTGC 58.105 45.000 17.11 0.00 36.70 5.34
316 319 1.580132 GCGCAAAATAGTCGTGCCG 60.580 57.895 0.30 0.00 34.73 5.69
349 352 1.319614 ACCGTGCAAGCCACTGTTTT 61.320 50.000 0.00 0.00 38.53 2.43
357 360 1.392589 AGCCACTGTTTTCACACCAG 58.607 50.000 0.00 0.00 0.00 4.00
366 369 0.034574 TTTCACACCAGTGGCTGTGT 60.035 50.000 28.64 17.46 45.91 3.72
393 400 3.244976 CTGCATCCCTAAAACTTTTGCG 58.755 45.455 0.00 0.00 0.00 4.85
411 418 2.280797 AGTGCGCGGAGAAAGCAA 60.281 55.556 8.83 0.00 42.93 3.91
430 437 4.326766 GCTTCGTGCTGCGCCAAA 62.327 61.111 4.18 1.76 41.07 3.28
431 438 2.562912 CTTCGTGCTGCGCCAAAT 59.437 55.556 4.18 0.00 41.07 2.32
436 443 1.329292 TCGTGCTGCGCCAAATAATAC 59.671 47.619 4.18 0.00 41.07 1.89
451 458 7.254556 GCCAAATAATACTAACACGGTTAGGTC 60.255 40.741 20.65 2.70 0.00 3.85
456 463 2.560105 ACTAACACGGTTAGGTCAGGTC 59.440 50.000 20.65 0.00 0.00 3.85
464 471 2.765135 GGTTAGGTCAGGTCTAGGGTTC 59.235 54.545 0.00 0.00 0.00 3.62
467 474 1.516423 GTCAGGTCTAGGGTTCGGC 59.484 63.158 0.00 0.00 0.00 5.54
492 511 2.043992 CATGTGCATGATCCCCCAAAT 58.956 47.619 6.32 0.00 41.20 2.32
540 559 1.599542 GCCGCAATAATCAGACAGGAC 59.400 52.381 0.00 0.00 0.00 3.85
554 573 3.815401 AGACAGGACAGTTTGTGCATAAC 59.185 43.478 0.00 0.77 41.46 1.89
637 661 0.813821 CCGTCTCTGTCAGCTCATCA 59.186 55.000 0.00 0.00 0.00 3.07
706 735 3.265272 AAGGTGCCAGCTCAGCTCC 62.265 63.158 15.48 15.48 43.22 4.70
772 808 0.036875 AGCCTAGCGTTTTCCTTGCT 59.963 50.000 0.00 0.00 42.58 3.91
789 826 2.566913 TGCTCCGTAAAGCTGAAAACA 58.433 42.857 0.00 0.00 42.94 2.83
790 827 2.946329 TGCTCCGTAAAGCTGAAAACAA 59.054 40.909 0.00 0.00 42.94 2.83
867 904 4.736896 GTCCGGACGGTGGTGCTC 62.737 72.222 20.85 0.00 36.47 4.26
871 908 4.295119 GGACGGTGGTGCTCGTGT 62.295 66.667 0.00 0.00 39.88 4.49
875 917 3.660111 GGTGGTGCTCGTGTTGGC 61.660 66.667 0.00 0.00 0.00 4.52
905 948 2.994995 TTGAGGCGCTTCTCCGGA 60.995 61.111 20.92 2.93 33.04 5.14
1073 1121 4.949856 TCCAGCTTCTTCTTTCTTGTGTTT 59.050 37.500 0.00 0.00 0.00 2.83
1122 1175 4.592179 GTTCTTCAGTTCTGTTGCTGTTC 58.408 43.478 0.00 0.00 34.57 3.18
1197 1271 5.878116 TGTATCATTTTTAGTCCAGGGAACG 59.122 40.000 0.00 0.00 0.00 3.95
1308 1400 5.046910 TCGTGGTCGTAGTAGGTAAAAAG 57.953 43.478 0.00 0.00 38.33 2.27
1440 1541 0.034896 CAACTAGGCACGGTGGTCTT 59.965 55.000 10.60 0.00 0.00 3.01
1466 1567 1.984570 CCTCCTCCCAACTCTCGCA 60.985 63.158 0.00 0.00 0.00 5.10
1469 1570 2.266055 CTCCCAACTCTCGCACCC 59.734 66.667 0.00 0.00 0.00 4.61
1549 1651 4.514577 CGCACCTCTAGGCCACCG 62.515 72.222 5.01 0.00 39.32 4.94
1570 1678 0.833949 CCAGCTCTACTCCCCTTTCC 59.166 60.000 0.00 0.00 0.00 3.13
1579 1687 0.967380 CTCCCCTTTCCGCTGCATTT 60.967 55.000 0.00 0.00 0.00 2.32
1627 1748 4.256920 CCAGGACTGATTTCTACTTGGTG 58.743 47.826 0.00 0.00 0.00 4.17
1628 1749 4.256920 CAGGACTGATTTCTACTTGGTGG 58.743 47.826 0.00 0.00 0.00 4.61
1694 1838 1.882623 CAGTTCTTTGTCCTGGGAAGC 59.117 52.381 0.00 0.00 0.00 3.86
1704 1848 0.035458 CCTGGGAAGCGTGAAGAACT 59.965 55.000 0.00 0.00 0.00 3.01
1798 2073 1.689273 GGATGCGAGTCCATACCTCTT 59.311 52.381 2.01 0.00 38.20 2.85
1848 2131 7.069085 TGTTCTTGCCTTACTATCCGTTATACT 59.931 37.037 0.00 0.00 0.00 2.12
1849 2132 7.211966 TCTTGCCTTACTATCCGTTATACTC 57.788 40.000 0.00 0.00 0.00 2.59
1850 2133 5.972107 TGCCTTACTATCCGTTATACTCC 57.028 43.478 0.00 0.00 0.00 3.85
1901 2190 2.357009 CTGCATGTTTCTACATCCAGCC 59.643 50.000 0.00 0.00 42.08 4.85
1910 2199 6.070251 TGTTTCTACATCCAGCCTTTATCAGA 60.070 38.462 0.00 0.00 0.00 3.27
1954 2250 6.969366 TGAAATTGTACATGACCTCAAACAG 58.031 36.000 0.00 0.00 0.00 3.16
2055 2361 0.842030 TTCTGGTCATCTGCTGGGGT 60.842 55.000 0.00 0.00 0.00 4.95
2056 2362 1.222936 CTGGTCATCTGCTGGGGTC 59.777 63.158 0.00 0.00 0.00 4.46
2057 2363 1.229625 TGGTCATCTGCTGGGGTCT 60.230 57.895 0.00 0.00 0.00 3.85
2058 2364 1.222936 GGTCATCTGCTGGGGTCTG 59.777 63.158 0.00 0.00 0.00 3.51
2059 2365 1.451028 GTCATCTGCTGGGGTCTGC 60.451 63.158 0.00 0.00 38.18 4.26
2060 2366 1.919816 TCATCTGCTGGGGTCTGCA 60.920 57.895 0.00 0.00 43.86 4.41
2061 2367 1.001764 CATCTGCTGGGGTCTGCAA 60.002 57.895 0.00 0.00 45.02 4.08
2062 2368 0.609957 CATCTGCTGGGGTCTGCAAA 60.610 55.000 0.00 0.00 45.02 3.68
2063 2369 0.323178 ATCTGCTGGGGTCTGCAAAG 60.323 55.000 0.00 0.00 45.02 2.77
2074 2380 2.454055 GTCTGCAAAGCACAAACAGTC 58.546 47.619 0.00 0.00 33.79 3.51
2089 2395 1.159285 CAGTCGATTTCAAGCCTGCA 58.841 50.000 0.00 0.00 0.00 4.41
2117 2423 1.348064 CCTGGTTGACTGTGGGTCTA 58.652 55.000 0.00 0.00 44.74 2.59
2230 2536 3.637273 GCCAACGGGGTGTCCTCT 61.637 66.667 0.00 0.00 39.65 3.69
2242 2548 2.650322 GTGTCCTCTTTTGACAACCCA 58.350 47.619 0.00 0.00 43.82 4.51
2264 2570 4.745751 TTTACCAGACCGCCCGCG 62.746 66.667 0.00 0.00 39.44 6.46
2296 2602 3.650139 CCCGTCATCCTATACTTTTCCG 58.350 50.000 0.00 0.00 0.00 4.30
2323 2629 2.573340 CAGGGGCGGCATTTTGTC 59.427 61.111 12.47 0.00 0.00 3.18
2371 2677 4.877773 ACCAGAGTTATGATCTCTCCACT 58.122 43.478 0.00 0.00 39.84 4.00
2488 2794 1.525995 CACCCGTGACCAGCTTGTT 60.526 57.895 0.00 0.00 0.00 2.83
2530 2836 2.478370 CGGAATTGCATTCATCAACGCT 60.478 45.455 0.00 0.00 41.03 5.07
2566 2872 4.897670 TCTGTTCCAGATGATCTCATAGCA 59.102 41.667 0.00 0.00 35.39 3.49
2644 2950 1.201647 CTGGAGACGGTGTATCGTGTT 59.798 52.381 0.00 0.00 43.96 3.32
2747 3053 1.066002 CCAGTGTGACCAAAACTGCTG 59.934 52.381 8.00 0.00 39.99 4.41
2748 3054 1.745087 CAGTGTGACCAAAACTGCTGT 59.255 47.619 0.00 0.00 35.34 4.40
3034 3340 1.133025 CAATCGGTGAATCAACTGGCC 59.867 52.381 0.00 0.00 0.00 5.36
3202 3508 2.297701 TCTGCTTTCACTGTTGGGAAC 58.702 47.619 0.00 0.00 0.00 3.62
3256 3562 0.606673 GCTCAGTCCTTGGGGTTGTC 60.607 60.000 0.00 0.00 0.00 3.18
3400 3706 4.489306 AAGCAGAACTTCCTATGGTACC 57.511 45.455 4.43 4.43 30.77 3.34
3499 3805 0.549950 ATGAGAGCTGGGTGATTGGG 59.450 55.000 0.00 0.00 0.00 4.12
3613 3919 3.515502 TCAATGAGTTCCGGACAGAGATT 59.484 43.478 1.83 0.00 0.00 2.40
3655 3961 2.047844 CGCCACCTGGTGTCTCTG 60.048 66.667 24.32 10.49 40.69 3.35
3697 4003 6.418057 AGGAATGAGATGATCTTGGTCTAC 57.582 41.667 0.00 0.00 0.00 2.59
3773 4079 1.302033 CTCAACTGGAAGCAGCGGT 60.302 57.895 0.00 0.00 37.60 5.68
3820 4126 4.140663 AGGGGGCTACACTATCTTCATACT 60.141 45.833 0.00 0.00 0.00 2.12
3940 4246 1.918467 CTGGGCCTGAGCTGGATCAA 61.918 60.000 4.53 0.00 39.73 2.57
4000 4306 2.420129 CCTTGACCCTGAATACTTCCGG 60.420 54.545 0.00 0.00 34.22 5.14
4126 4432 1.303643 GAACTTGGCAGAGTGGGGG 60.304 63.158 3.64 0.00 0.00 5.40
4216 4522 0.892063 ACTCTCTGAGGAAGTTCGGC 59.108 55.000 4.59 0.00 33.35 5.54
4240 4546 2.360475 GTGGAGAAGTGCCTGGCC 60.360 66.667 17.53 7.66 0.00 5.36
4285 4591 1.689582 GGGGGACGTCCTCTGGAAT 60.690 63.158 32.76 0.00 36.50 3.01
4533 4839 2.852495 AAACGCGCCGGATGATCTGT 62.852 55.000 5.05 0.00 0.00 3.41
4555 4861 1.325476 GGGTACCGGTAGAGGTGTGG 61.325 65.000 16.41 0.00 45.54 4.17
4573 4879 2.301583 GTGGGCAAGCCTTGGATTTTTA 59.698 45.455 11.40 0.00 36.10 1.52
4687 5001 2.940083 GCCTTACCTTACCCACTTCTGC 60.940 54.545 0.00 0.00 0.00 4.26
4695 5009 2.360350 CCACTTCTGCGGGCACAT 60.360 61.111 0.00 0.00 0.00 3.21
4704 5018 1.009675 GCGGGCACATGATTTAGCG 60.010 57.895 0.00 0.00 0.00 4.26
4875 5193 1.473677 GCAGCCAATGTGTGCAATCTA 59.526 47.619 0.00 0.00 37.16 1.98
4876 5194 2.100252 GCAGCCAATGTGTGCAATCTAT 59.900 45.455 0.00 0.00 37.16 1.98
4931 5265 3.232213 TCGAAACAAATCGAGAGGAGG 57.768 47.619 0.00 0.00 46.12 4.30
4932 5266 2.823747 TCGAAACAAATCGAGAGGAGGA 59.176 45.455 0.00 0.00 46.12 3.71
4933 5267 3.119459 TCGAAACAAATCGAGAGGAGGAG 60.119 47.826 0.00 0.00 46.12 3.69
4944 5278 0.329596 GAGGAGGAGTTGCCCACATT 59.670 55.000 0.00 0.00 37.37 2.71
4972 5306 2.257894 TGCTCGGCGCATTTATTTTTG 58.742 42.857 10.83 0.00 45.47 2.44
4973 5307 1.006079 GCTCGGCGCATTTATTTTTGC 60.006 47.619 10.83 0.00 38.92 3.68
4974 5308 2.257894 CTCGGCGCATTTATTTTTGCA 58.742 42.857 10.83 0.00 38.80 4.08
4975 5309 2.859538 CTCGGCGCATTTATTTTTGCAT 59.140 40.909 10.83 0.00 38.80 3.96
4976 5310 4.033990 TCGGCGCATTTATTTTTGCATA 57.966 36.364 10.83 0.00 38.80 3.14
5014 5349 2.416701 CCAAAAGGTTTGCACTCACGTT 60.417 45.455 0.00 0.00 0.00 3.99
5019 5354 1.332375 GGTTTGCACTCACGTTAGCAA 59.668 47.619 8.96 8.96 44.36 3.91
5024 5359 1.661112 GCACTCACGTTAGCAAGATCC 59.339 52.381 0.00 0.00 0.00 3.36
5026 5361 2.093973 CACTCACGTTAGCAAGATCCCT 60.094 50.000 0.00 0.00 0.00 4.20
5033 5368 0.752009 TAGCAAGATCCCTCGCGAGT 60.752 55.000 32.41 16.41 0.00 4.18
5034 5369 0.752009 AGCAAGATCCCTCGCGAGTA 60.752 55.000 32.41 21.36 0.00 2.59
5035 5370 0.315568 GCAAGATCCCTCGCGAGTAT 59.684 55.000 32.41 24.81 0.00 2.12
5036 5371 1.540267 GCAAGATCCCTCGCGAGTATA 59.460 52.381 32.41 18.51 0.00 1.47
5037 5372 2.668834 GCAAGATCCCTCGCGAGTATAC 60.669 54.545 32.41 20.53 0.00 1.47
5038 5373 1.823797 AGATCCCTCGCGAGTATACC 58.176 55.000 32.41 17.66 0.00 2.73
5039 5374 1.351683 AGATCCCTCGCGAGTATACCT 59.648 52.381 32.41 19.42 0.00 3.08
5040 5375 1.469308 GATCCCTCGCGAGTATACCTG 59.531 57.143 32.41 16.26 0.00 4.00
5041 5376 0.536687 TCCCTCGCGAGTATACCTGG 60.537 60.000 32.41 23.86 0.00 4.45
5042 5377 1.286260 CCTCGCGAGTATACCTGGC 59.714 63.158 32.41 0.00 41.14 4.85
5043 5378 1.286260 CTCGCGAGTATACCTGGCC 59.714 63.158 27.79 0.00 41.48 5.36
5044 5379 1.452953 CTCGCGAGTATACCTGGCCA 61.453 60.000 27.79 4.71 41.48 5.36
5045 5380 0.826256 TCGCGAGTATACCTGGCCAT 60.826 55.000 5.51 0.00 41.48 4.40
5046 5381 0.667487 CGCGAGTATACCTGGCCATG 60.667 60.000 5.51 6.06 41.48 3.66
5047 5382 0.320771 GCGAGTATACCTGGCCATGG 60.321 60.000 5.51 13.05 38.85 3.66
5048 5383 0.321671 CGAGTATACCTGGCCATGGG 59.678 60.000 20.97 16.10 0.00 4.00
5104 5439 3.096495 GCCCAGGCCCTACCATCA 61.096 66.667 0.00 0.00 43.14 3.07
5105 5440 3.125376 GCCCAGGCCCTACCATCAG 62.125 68.421 0.00 0.00 43.14 2.90
5106 5441 2.455565 CCCAGGCCCTACCATCAGG 61.456 68.421 0.00 0.00 43.14 3.86
5107 5442 2.512896 CAGGCCCTACCATCAGGC 59.487 66.667 0.00 0.00 46.37 4.85
5110 5445 4.313523 GCCCTACCATCAGGCCTA 57.686 61.111 3.98 0.00 41.00 3.93
5111 5446 1.755384 GCCCTACCATCAGGCCTAC 59.245 63.158 3.98 0.00 41.00 3.18
5112 5447 0.764752 GCCCTACCATCAGGCCTACT 60.765 60.000 3.98 0.00 41.00 2.57
5113 5448 1.807814 CCCTACCATCAGGCCTACTT 58.192 55.000 3.98 0.00 39.06 2.24
5114 5449 2.127708 CCCTACCATCAGGCCTACTTT 58.872 52.381 3.98 0.00 39.06 2.66
5115 5450 2.509964 CCCTACCATCAGGCCTACTTTT 59.490 50.000 3.98 0.00 39.06 2.27
5116 5451 3.433740 CCCTACCATCAGGCCTACTTTTC 60.434 52.174 3.98 0.00 39.06 2.29
5117 5452 3.199946 CCTACCATCAGGCCTACTTTTCA 59.800 47.826 3.98 0.00 39.06 2.69
5118 5453 3.806949 ACCATCAGGCCTACTTTTCAA 57.193 42.857 3.98 0.00 39.06 2.69
5119 5454 3.690460 ACCATCAGGCCTACTTTTCAAG 58.310 45.455 3.98 0.00 39.06 3.02
5120 5455 2.424956 CCATCAGGCCTACTTTTCAAGC 59.575 50.000 3.98 0.00 0.00 4.01
5121 5456 2.200373 TCAGGCCTACTTTTCAAGCC 57.800 50.000 3.98 0.00 44.20 4.35
5122 5457 1.177401 CAGGCCTACTTTTCAAGCCC 58.823 55.000 3.98 0.00 45.00 5.19
5123 5458 0.777446 AGGCCTACTTTTCAAGCCCA 59.223 50.000 1.29 0.00 45.00 5.36
5124 5459 1.146982 AGGCCTACTTTTCAAGCCCAA 59.853 47.619 1.29 0.00 45.00 4.12
5125 5460 1.546029 GGCCTACTTTTCAAGCCCAAG 59.454 52.381 0.00 0.00 37.66 3.61
5126 5461 1.067565 GCCTACTTTTCAAGCCCAAGC 60.068 52.381 0.00 0.00 40.32 4.01
5127 5462 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
5128 5463 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
5129 5464 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
5130 5465 2.158561 CTTTTCAAGCCCAAGCCCGG 62.159 60.000 0.00 0.00 41.25 5.73
5139 5474 4.113815 CAAGCCCGGCCCATCTGA 62.114 66.667 5.55 0.00 0.00 3.27
5140 5475 3.099170 AAGCCCGGCCCATCTGAT 61.099 61.111 5.55 0.00 0.00 2.90
5141 5476 1.770110 AAGCCCGGCCCATCTGATA 60.770 57.895 5.55 0.00 0.00 2.15
5142 5477 1.352622 AAGCCCGGCCCATCTGATAA 61.353 55.000 5.55 0.00 0.00 1.75
5143 5478 1.150536 GCCCGGCCCATCTGATAAA 59.849 57.895 0.00 0.00 0.00 1.40
5144 5479 0.467290 GCCCGGCCCATCTGATAAAA 60.467 55.000 0.00 0.00 0.00 1.52
5145 5480 2.026905 GCCCGGCCCATCTGATAAAAA 61.027 52.381 0.00 0.00 0.00 1.94
5146 5481 1.956477 CCCGGCCCATCTGATAAAAAG 59.044 52.381 0.00 0.00 0.00 2.27
5147 5482 1.338020 CCGGCCCATCTGATAAAAAGC 59.662 52.381 0.00 0.00 0.00 3.51
5148 5483 1.338020 CGGCCCATCTGATAAAAAGCC 59.662 52.381 0.00 0.00 35.78 4.35
5149 5484 1.688735 GGCCCATCTGATAAAAAGCCC 59.311 52.381 0.00 0.00 32.93 5.19
5150 5485 2.670939 GCCCATCTGATAAAAAGCCCT 58.329 47.619 0.00 0.00 0.00 5.19
5151 5486 2.363359 GCCCATCTGATAAAAAGCCCTG 59.637 50.000 0.00 0.00 0.00 4.45
5152 5487 3.902218 CCCATCTGATAAAAAGCCCTGA 58.098 45.455 0.00 0.00 0.00 3.86
5153 5488 4.280819 CCCATCTGATAAAAAGCCCTGAA 58.719 43.478 0.00 0.00 0.00 3.02
5154 5489 4.711355 CCCATCTGATAAAAAGCCCTGAAA 59.289 41.667 0.00 0.00 0.00 2.69
5155 5490 5.187576 CCCATCTGATAAAAAGCCCTGAAAA 59.812 40.000 0.00 0.00 0.00 2.29
5156 5491 6.335777 CCATCTGATAAAAAGCCCTGAAAAG 58.664 40.000 0.00 0.00 0.00 2.27
5157 5492 5.391312 TCTGATAAAAAGCCCTGAAAAGC 57.609 39.130 0.00 0.00 0.00 3.51
5158 5493 4.220602 TCTGATAAAAAGCCCTGAAAAGCC 59.779 41.667 0.00 0.00 0.00 4.35
5159 5494 3.260632 TGATAAAAAGCCCTGAAAAGCCC 59.739 43.478 0.00 0.00 0.00 5.19
5160 5495 1.806496 AAAAAGCCCTGAAAAGCCCT 58.194 45.000 0.00 0.00 0.00 5.19
5161 5496 1.806496 AAAAGCCCTGAAAAGCCCTT 58.194 45.000 0.00 0.00 0.00 3.95
5162 5497 2.694616 AAAGCCCTGAAAAGCCCTTA 57.305 45.000 0.00 0.00 0.00 2.69
5163 5498 2.222227 AAGCCCTGAAAAGCCCTTAG 57.778 50.000 0.00 0.00 0.00 2.18
5164 5499 0.332972 AGCCCTGAAAAGCCCTTAGG 59.667 55.000 0.00 0.00 0.00 2.69
5194 5529 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
5195 5530 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
5196 5531 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
5197 5532 0.323087 GCCGGGCCTCTTCCTTAAAA 60.323 55.000 8.12 0.00 0.00 1.52
5198 5533 1.685180 GCCGGGCCTCTTCCTTAAAAT 60.685 52.381 8.12 0.00 0.00 1.82
5199 5534 2.024414 CCGGGCCTCTTCCTTAAAATG 58.976 52.381 0.84 0.00 0.00 2.32
5200 5535 1.405463 CGGGCCTCTTCCTTAAAATGC 59.595 52.381 0.84 0.00 0.00 3.56
5201 5536 1.757118 GGGCCTCTTCCTTAAAATGCC 59.243 52.381 0.84 0.00 36.92 4.40
5202 5537 2.456577 GGCCTCTTCCTTAAAATGCCA 58.543 47.619 0.00 0.00 37.58 4.92
5203 5538 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
5204 5539 3.452264 GGCCTCTTCCTTAAAATGCCAAT 59.548 43.478 0.00 0.00 37.58 3.16
5205 5540 4.649218 GGCCTCTTCCTTAAAATGCCAATA 59.351 41.667 0.00 0.00 37.58 1.90
5206 5541 5.305386 GGCCTCTTCCTTAAAATGCCAATAT 59.695 40.000 0.00 0.00 37.58 1.28
5207 5542 6.218746 GCCTCTTCCTTAAAATGCCAATATG 58.781 40.000 0.00 0.00 0.00 1.78
5208 5543 6.218746 CCTCTTCCTTAAAATGCCAATATGC 58.781 40.000 0.00 0.00 0.00 3.14
5209 5544 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
5210 5545 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
5211 5546 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
5212 5547 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
5213 5548 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
5214 5549 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
5215 5550 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
5216 5551 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
5217 5552 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
5218 5553 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
5219 5554 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
5220 5555 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
5221 5556 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
5226 5561 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
5227 5562 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
5251 5586 3.668386 CCGGTGGGCTCAAAACTC 58.332 61.111 0.00 0.00 0.00 3.01
5252 5587 1.228124 CCGGTGGGCTCAAAACTCA 60.228 57.895 0.00 0.00 0.00 3.41
5253 5588 1.237285 CCGGTGGGCTCAAAACTCAG 61.237 60.000 0.00 0.00 0.00 3.35
5254 5589 1.237285 CGGTGGGCTCAAAACTCAGG 61.237 60.000 0.00 0.00 0.00 3.86
5255 5590 1.527433 GGTGGGCTCAAAACTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
5257 5592 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
5258 5593 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
5259 5594 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
5260 5595 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
5261 5596 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
5305 5640 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
5306 5641 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
5313 5648 2.812664 CTGGATTTTAGGGCCAGGC 58.187 57.895 6.18 1.26 44.24 4.85
5346 5681 4.227134 CGGACCGGAGATGGCCAG 62.227 72.222 13.05 0.00 0.00 4.85
5347 5682 3.866582 GGACCGGAGATGGCCAGG 61.867 72.222 13.05 9.29 0.00 4.45
5348 5683 2.764128 GACCGGAGATGGCCAGGA 60.764 66.667 13.05 0.00 0.00 3.86
5349 5684 3.083997 ACCGGAGATGGCCAGGAC 61.084 66.667 13.05 5.34 0.00 3.85
5350 5685 2.765807 CCGGAGATGGCCAGGACT 60.766 66.667 13.05 10.74 0.00 3.85
5351 5686 1.457643 CCGGAGATGGCCAGGACTA 60.458 63.158 13.05 0.00 0.00 2.59
5352 5687 1.742768 CGGAGATGGCCAGGACTAC 59.257 63.158 13.05 10.47 0.00 2.73
5353 5688 0.757188 CGGAGATGGCCAGGACTACT 60.757 60.000 13.05 3.29 0.00 2.57
5354 5689 1.044611 GGAGATGGCCAGGACTACTC 58.955 60.000 13.05 12.09 0.00 2.59
5355 5690 0.671251 GAGATGGCCAGGACTACTCG 59.329 60.000 13.05 0.00 0.00 4.18
5356 5691 1.068250 GATGGCCAGGACTACTCGC 59.932 63.158 13.05 0.00 0.00 5.03
5357 5692 2.685387 GATGGCCAGGACTACTCGCG 62.685 65.000 13.05 0.00 0.00 5.87
5358 5693 3.138798 GGCCAGGACTACTCGCGA 61.139 66.667 9.26 9.26 0.00 5.87
5359 5694 2.409651 GCCAGGACTACTCGCGAG 59.590 66.667 33.45 33.45 0.00 5.03
5360 5695 2.113433 GCCAGGACTACTCGCGAGA 61.113 63.158 40.58 22.94 39.12 4.04
5370 5705 4.559835 TCGCGAGAGAAACAGCTG 57.440 55.556 13.48 13.48 34.84 4.24
5371 5706 1.734477 TCGCGAGAGAAACAGCTGC 60.734 57.895 15.27 0.00 34.84 5.25
5372 5707 1.735920 CGCGAGAGAAACAGCTGCT 60.736 57.895 15.27 2.18 0.00 4.24
5373 5708 1.786582 GCGAGAGAAACAGCTGCTG 59.213 57.895 27.02 27.02 37.52 4.41
5394 5729 3.861797 CCGCCGCCTAGGGTTCAT 61.862 66.667 11.72 0.00 41.48 2.57
5395 5730 2.280186 CGCCGCCTAGGGTTCATC 60.280 66.667 11.72 0.00 41.48 2.92
5396 5731 2.111251 GCCGCCTAGGGTTCATCC 59.889 66.667 11.72 0.00 41.48 3.51
5406 5741 2.677971 GGTTCATCCCACGTCATCG 58.322 57.895 0.00 0.00 43.34 3.84
5407 5742 1.429148 GGTTCATCCCACGTCATCGC 61.429 60.000 0.00 0.00 41.18 4.58
5408 5743 0.460284 GTTCATCCCACGTCATCGCT 60.460 55.000 0.00 0.00 41.18 4.93
5409 5744 0.460109 TTCATCCCACGTCATCGCTG 60.460 55.000 0.00 0.00 41.18 5.18
5410 5745 1.153568 CATCCCACGTCATCGCTGT 60.154 57.895 0.00 0.00 41.18 4.40
5411 5746 0.740868 CATCCCACGTCATCGCTGTT 60.741 55.000 0.00 0.00 41.18 3.16
5412 5747 0.740868 ATCCCACGTCATCGCTGTTG 60.741 55.000 0.00 0.00 41.18 3.33
5413 5748 2.476051 CCACGTCATCGCTGTTGC 59.524 61.111 0.00 0.00 41.18 4.17
5414 5749 2.476051 CACGTCATCGCTGTTGCC 59.524 61.111 0.00 0.00 41.18 4.52
5415 5750 2.029288 CACGTCATCGCTGTTGCCT 61.029 57.895 0.00 0.00 41.18 4.75
5416 5751 0.735978 CACGTCATCGCTGTTGCCTA 60.736 55.000 0.00 0.00 41.18 3.93
5417 5752 0.458543 ACGTCATCGCTGTTGCCTAG 60.459 55.000 0.00 0.00 41.18 3.02
5418 5753 1.148157 CGTCATCGCTGTTGCCTAGG 61.148 60.000 3.67 3.67 35.36 3.02
5419 5754 0.811616 GTCATCGCTGTTGCCTAGGG 60.812 60.000 11.72 0.00 35.36 3.53
5420 5755 1.221840 CATCGCTGTTGCCTAGGGT 59.778 57.895 11.72 0.00 35.36 4.34
5421 5756 0.392998 CATCGCTGTTGCCTAGGGTT 60.393 55.000 11.72 0.00 35.36 4.11
5422 5757 0.107654 ATCGCTGTTGCCTAGGGTTC 60.108 55.000 11.72 0.00 35.36 3.62
5423 5758 1.745489 CGCTGTTGCCTAGGGTTCC 60.745 63.158 11.72 0.00 35.36 3.62
5424 5759 1.685820 GCTGTTGCCTAGGGTTCCT 59.314 57.895 11.72 0.00 37.71 3.36
5425 5760 0.393132 GCTGTTGCCTAGGGTTCCTC 60.393 60.000 11.72 0.00 34.61 3.71
5426 5761 0.253327 CTGTTGCCTAGGGTTCCTCC 59.747 60.000 11.72 0.00 34.61 4.30
5435 5770 4.754667 GGTTCCTCCCACGCCGTC 62.755 72.222 0.00 0.00 0.00 4.79
5436 5771 3.998672 GTTCCTCCCACGCCGTCA 61.999 66.667 0.00 0.00 0.00 4.35
5437 5772 3.000819 TTCCTCCCACGCCGTCAT 61.001 61.111 0.00 0.00 0.00 3.06
5438 5773 3.014085 TTCCTCCCACGCCGTCATC 62.014 63.158 0.00 0.00 0.00 2.92
5439 5774 3.461773 CCTCCCACGCCGTCATCT 61.462 66.667 0.00 0.00 0.00 2.90
5440 5775 2.105128 CTCCCACGCCGTCATCTC 59.895 66.667 0.00 0.00 0.00 2.75
5441 5776 3.432051 CTCCCACGCCGTCATCTCC 62.432 68.421 0.00 0.00 0.00 3.71
5442 5777 4.873129 CCCACGCCGTCATCTCCG 62.873 72.222 0.00 0.00 0.00 4.63
5446 5781 4.933064 CGCCGTCATCTCCGCCTC 62.933 72.222 0.00 0.00 0.00 4.70
5447 5782 4.593864 GCCGTCATCTCCGCCTCC 62.594 72.222 0.00 0.00 0.00 4.30
5448 5783 3.917760 CCGTCATCTCCGCCTCCC 61.918 72.222 0.00 0.00 0.00 4.30
5449 5784 2.835431 CGTCATCTCCGCCTCCCT 60.835 66.667 0.00 0.00 0.00 4.20
5450 5785 2.851071 CGTCATCTCCGCCTCCCTC 61.851 68.421 0.00 0.00 0.00 4.30
5451 5786 2.123251 TCATCTCCGCCTCCCTCC 60.123 66.667 0.00 0.00 0.00 4.30
5452 5787 2.123077 CATCTCCGCCTCCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
5453 5788 2.200092 ATCTCCGCCTCCCTCCTC 59.800 66.667 0.00 0.00 0.00 3.71
5454 5789 2.399607 ATCTCCGCCTCCCTCCTCT 61.400 63.158 0.00 0.00 0.00 3.69
5455 5790 2.366153 ATCTCCGCCTCCCTCCTCTC 62.366 65.000 0.00 0.00 0.00 3.20
5456 5791 3.024356 TCCGCCTCCCTCCTCTCT 61.024 66.667 0.00 0.00 0.00 3.10
5457 5792 2.042435 CCGCCTCCCTCCTCTCTT 60.042 66.667 0.00 0.00 0.00 2.85
5458 5793 1.687493 CCGCCTCCCTCCTCTCTTT 60.687 63.158 0.00 0.00 0.00 2.52
5459 5794 1.268283 CCGCCTCCCTCCTCTCTTTT 61.268 60.000 0.00 0.00 0.00 2.27
5460 5795 0.107945 CGCCTCCCTCCTCTCTTTTG 60.108 60.000 0.00 0.00 0.00 2.44
5461 5796 0.988063 GCCTCCCTCCTCTCTTTTGT 59.012 55.000 0.00 0.00 0.00 2.83
5462 5797 1.352687 GCCTCCCTCCTCTCTTTTGTT 59.647 52.381 0.00 0.00 0.00 2.83
5463 5798 2.224892 GCCTCCCTCCTCTCTTTTGTTT 60.225 50.000 0.00 0.00 0.00 2.83
5464 5799 3.416156 CCTCCCTCCTCTCTTTTGTTTG 58.584 50.000 0.00 0.00 0.00 2.93
5465 5800 3.416156 CTCCCTCCTCTCTTTTGTTTGG 58.584 50.000 0.00 0.00 0.00 3.28
5466 5801 1.889170 CCCTCCTCTCTTTTGTTTGGC 59.111 52.381 0.00 0.00 0.00 4.52
5467 5802 1.537202 CCTCCTCTCTTTTGTTTGGCG 59.463 52.381 0.00 0.00 0.00 5.69
5468 5803 1.537202 CTCCTCTCTTTTGTTTGGCGG 59.463 52.381 0.00 0.00 0.00 6.13
5469 5804 0.039165 CCTCTCTTTTGTTTGGCGGC 60.039 55.000 0.00 0.00 0.00 6.53
5470 5805 0.954452 CTCTCTTTTGTTTGGCGGCT 59.046 50.000 11.43 0.00 0.00 5.52
5471 5806 2.151202 CTCTCTTTTGTTTGGCGGCTA 58.849 47.619 11.43 0.00 0.00 3.93
5472 5807 1.877443 TCTCTTTTGTTTGGCGGCTAC 59.123 47.619 11.43 9.18 0.00 3.58
5473 5808 1.606668 CTCTTTTGTTTGGCGGCTACA 59.393 47.619 11.43 11.87 0.00 2.74
5474 5809 2.228822 CTCTTTTGTTTGGCGGCTACAT 59.771 45.455 11.43 0.00 0.00 2.29
5475 5810 2.227865 TCTTTTGTTTGGCGGCTACATC 59.772 45.455 11.43 0.00 0.00 3.06
5476 5811 0.519519 TTTGTTTGGCGGCTACATCG 59.480 50.000 11.43 0.00 0.00 3.84
5477 5812 1.302383 TTGTTTGGCGGCTACATCGG 61.302 55.000 11.43 0.00 0.00 4.18
5482 5817 4.899239 GCGGCTACATCGGCAGCT 62.899 66.667 3.85 0.00 44.81 4.24
5483 5818 2.728180 CGGCTACATCGGCAGCTA 59.272 61.111 0.00 0.00 37.91 3.32
5484 5819 1.372251 CGGCTACATCGGCAGCTAG 60.372 63.158 0.00 0.00 37.91 3.42
5485 5820 1.796190 CGGCTACATCGGCAGCTAGA 61.796 60.000 0.00 0.00 37.91 2.43
5486 5821 0.038709 GGCTACATCGGCAGCTAGAG 60.039 60.000 0.00 0.00 37.91 2.43
5487 5822 0.038709 GCTACATCGGCAGCTAGAGG 60.039 60.000 0.00 0.00 34.86 3.69
5488 5823 1.610363 CTACATCGGCAGCTAGAGGA 58.390 55.000 9.42 0.00 0.00 3.71
5489 5824 1.539388 CTACATCGGCAGCTAGAGGAG 59.461 57.143 9.42 0.15 0.00 3.69
5490 5825 0.396417 ACATCGGCAGCTAGAGGAGT 60.396 55.000 9.42 0.94 0.00 3.85
5491 5826 1.133761 ACATCGGCAGCTAGAGGAGTA 60.134 52.381 9.42 0.00 0.00 2.59
5492 5827 1.539388 CATCGGCAGCTAGAGGAGTAG 59.461 57.143 0.00 0.00 0.00 2.57
5493 5828 0.179015 TCGGCAGCTAGAGGAGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
5494 5829 1.175983 CGGCAGCTAGAGGAGTAGGG 61.176 65.000 0.00 0.00 0.00 3.53
5495 5830 0.830023 GGCAGCTAGAGGAGTAGGGG 60.830 65.000 0.00 0.00 0.00 4.79
5496 5831 1.468506 GCAGCTAGAGGAGTAGGGGC 61.469 65.000 0.00 0.00 0.00 5.80
5497 5832 0.830023 CAGCTAGAGGAGTAGGGGCC 60.830 65.000 0.00 0.00 0.00 5.80
5498 5833 1.534476 GCTAGAGGAGTAGGGGCCC 60.534 68.421 17.12 17.12 0.00 5.80
5499 5834 1.228613 CTAGAGGAGTAGGGGCCCG 60.229 68.421 18.95 0.00 0.00 6.13
5500 5835 2.716833 CTAGAGGAGTAGGGGCCCGG 62.717 70.000 18.95 0.00 0.00 5.73
5512 5847 4.699522 GCCCGGCCTCTTCGTTGT 62.700 66.667 0.00 0.00 0.00 3.32
5513 5848 2.032071 CCCGGCCTCTTCGTTGTT 59.968 61.111 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.658994 CATGCACATGCCATTTTCCC 58.341 50.000 0.49 0.00 41.18 3.97
44 45 4.244066 CAAAATCGGCATTTTCATGGACA 58.756 39.130 0.00 0.00 39.75 4.02
142 144 2.695359 TGGGAAATCGTTTCTCTTCGG 58.305 47.619 10.36 0.00 40.83 4.30
154 157 4.777366 TCTTCCATTTTCCCTTGGGAAATC 59.223 41.667 28.24 0.00 37.20 2.17
200 203 3.557185 GCCTTTTGTTTTGCTCTTCCTTG 59.443 43.478 0.00 0.00 0.00 3.61
235 238 2.420642 TCGTATCTATTCTCGACCCCG 58.579 52.381 0.00 0.00 37.07 5.73
245 248 5.503683 GCGCCGTAGTATGATCGTATCTATT 60.504 44.000 0.00 0.00 0.00 1.73
266 269 3.127533 ATGCCTCGGAAACTGCGC 61.128 61.111 0.00 0.00 0.00 6.09
286 289 0.672889 TTTTGCGCATTTCTCTGCCA 59.327 45.000 12.75 0.00 39.00 4.92
314 317 1.579429 GGTAAGCTGTTGTTGCCGG 59.421 57.895 0.00 0.00 0.00 6.13
316 319 0.040425 CACGGTAAGCTGTTGTTGCC 60.040 55.000 0.00 0.00 30.42 4.52
372 375 3.057596 TCGCAAAAGTTTTAGGGATGCAG 60.058 43.478 0.00 0.00 32.80 4.41
393 400 2.233007 CTTGCTTTCTCCGCGCACTC 62.233 60.000 8.75 0.00 32.71 3.51
421 428 4.514506 CGTGTTAGTATTATTTGGCGCAG 58.485 43.478 10.83 0.00 0.00 5.18
429 436 7.124750 ACCTGACCTAACCGTGTTAGTATTATT 59.875 37.037 17.18 2.10 0.00 1.40
430 437 6.608808 ACCTGACCTAACCGTGTTAGTATTAT 59.391 38.462 17.18 3.81 0.00 1.28
431 438 5.951747 ACCTGACCTAACCGTGTTAGTATTA 59.048 40.000 17.18 6.44 0.00 0.98
436 443 2.824341 AGACCTGACCTAACCGTGTTAG 59.176 50.000 13.68 13.68 0.00 2.34
451 458 1.817209 GAGCCGAACCCTAGACCTG 59.183 63.158 0.00 0.00 0.00 4.00
456 463 2.797278 ATGGCGAGCCGAACCCTAG 61.797 63.158 9.78 0.00 39.42 3.02
521 540 2.868583 CTGTCCTGTCTGATTATTGCGG 59.131 50.000 0.00 0.00 0.00 5.69
582 601 8.522003 GCTCTGTTTAGTTTAAGTAGGACTAGT 58.478 37.037 0.00 0.00 0.00 2.57
583 602 8.741841 AGCTCTGTTTAGTTTAAGTAGGACTAG 58.258 37.037 0.00 0.00 0.00 2.57
584 603 8.647256 AGCTCTGTTTAGTTTAAGTAGGACTA 57.353 34.615 0.00 0.00 0.00 2.59
706 735 2.891307 TTAAGAGGAGGGCGAGGGGG 62.891 65.000 0.00 0.00 0.00 5.40
772 808 3.562557 GGAGTTGTTTTCAGCTTTACGGA 59.437 43.478 0.00 0.00 41.29 4.69
885 927 1.518133 CGGAGAAGCGCCTCAAGAG 60.518 63.158 9.03 0.00 34.94 2.85
1042 1090 0.873743 GAAGAAGCTGGATCCGCGAG 60.874 60.000 8.23 7.86 0.00 5.03
1073 1121 2.938823 GAACAGCGCGCTCGTGAAA 61.939 57.895 34.28 0.00 38.14 2.69
1176 1235 5.174037 TCGTTCCCTGGACTAAAAATGAT 57.826 39.130 0.00 0.00 0.00 2.45
1193 1267 5.960105 GCAGCACTACTATTGATTTTCGTTC 59.040 40.000 0.00 0.00 0.00 3.95
1197 1271 6.917217 AGAGCAGCACTACTATTGATTTTC 57.083 37.500 0.00 0.00 0.00 2.29
1290 1382 5.185828 TCTTCCCTTTTTACCTACTACGACC 59.814 44.000 0.00 0.00 0.00 4.79
1308 1400 8.214364 AGAGTTTCTGTTCCATAATATCTTCCC 58.786 37.037 0.00 0.00 0.00 3.97
1386 1486 2.030701 GCGCCGAATTTATTGTACGGAA 59.969 45.455 0.00 0.00 45.31 4.30
1440 1541 1.080498 AGTTGGGAGGAGGTATGGACA 59.920 52.381 0.00 0.00 0.00 4.02
1466 1567 3.073062 CCGATTTGGGAGAATATGAGGGT 59.927 47.826 0.00 0.00 0.00 4.34
1469 1570 2.738846 CGCCGATTTGGGAGAATATGAG 59.261 50.000 0.00 0.00 38.63 2.90
1501 1602 1.907739 TGCCATGACTGGGAGTAGC 59.092 57.895 0.00 0.00 43.36 3.58
1533 1635 3.372554 GACGGTGGCCTAGAGGTGC 62.373 68.421 3.32 0.00 37.57 5.01
1549 1651 1.483004 GAAAGGGGAGTAGAGCTGGAC 59.517 57.143 0.00 0.00 0.00 4.02
1570 1678 4.183686 CTCCGGCCAAATGCAGCG 62.184 66.667 2.24 0.00 43.89 5.18
1579 1687 4.880426 GGATCTCCCCTCCGGCCA 62.880 72.222 2.24 0.00 0.00 5.36
1694 1838 3.489180 ACTATGGACGAGTTCTTCACG 57.511 47.619 0.00 0.00 36.30 4.35
1704 1848 3.559069 ACCGAATCCTAACTATGGACGA 58.441 45.455 0.00 0.00 36.30 4.20
1798 2073 6.048732 TCAGATATACAGAACAGCACCAAA 57.951 37.500 0.00 0.00 0.00 3.28
1848 2131 2.875672 GCAAGAACACTGGCATGTAGGA 60.876 50.000 0.00 0.00 31.46 2.94
1849 2132 1.470098 GCAAGAACACTGGCATGTAGG 59.530 52.381 0.00 0.00 31.46 3.18
1850 2133 2.430465 AGCAAGAACACTGGCATGTAG 58.570 47.619 0.00 0.00 33.38 2.74
1924 2218 6.371548 TGAGGTCATGTACAATTTCAAGCTAC 59.628 38.462 0.00 0.00 0.00 3.58
2055 2361 1.063912 CGACTGTTTGTGCTTTGCAGA 59.936 47.619 0.00 0.00 40.08 4.26
2056 2362 1.063912 TCGACTGTTTGTGCTTTGCAG 59.936 47.619 0.00 0.00 40.08 4.41
2057 2363 1.090728 TCGACTGTTTGTGCTTTGCA 58.909 45.000 0.00 0.00 35.60 4.08
2058 2364 2.405892 ATCGACTGTTTGTGCTTTGC 57.594 45.000 0.00 0.00 0.00 3.68
2059 2365 4.350346 TGAAATCGACTGTTTGTGCTTTG 58.650 39.130 0.00 0.00 0.00 2.77
2060 2366 4.630894 TGAAATCGACTGTTTGTGCTTT 57.369 36.364 0.00 0.00 0.00 3.51
2061 2367 4.601019 CTTGAAATCGACTGTTTGTGCTT 58.399 39.130 0.00 0.00 0.00 3.91
2062 2368 3.548818 GCTTGAAATCGACTGTTTGTGCT 60.549 43.478 0.00 0.00 0.00 4.40
2063 2369 2.721090 GCTTGAAATCGACTGTTTGTGC 59.279 45.455 0.00 0.00 0.00 4.57
2074 2380 1.129998 CTGTCTGCAGGCTTGAAATCG 59.870 52.381 20.86 0.00 39.01 3.34
2089 2395 1.620819 CAGTCAACCAGGTAGCTGTCT 59.379 52.381 19.98 4.31 0.00 3.41
2117 2423 3.819877 GAACCGTCGTGCCCTTGGT 62.820 63.158 0.00 0.00 33.45 3.67
2230 2536 3.131400 GGTAAAGCACTGGGTTGTCAAAA 59.869 43.478 0.00 0.00 34.38 2.44
2242 2548 1.003718 GGCGGTCTGGTAAAGCACT 60.004 57.895 0.00 0.00 0.00 4.40
2296 2602 2.203126 CGCCCCTGCTTCTGGATC 60.203 66.667 0.00 0.00 34.43 3.36
2323 2629 2.732844 AGGGGTAGAAGTAGAGACGG 57.267 55.000 0.00 0.00 0.00 4.79
2371 2677 1.885388 CGACACGGTGAACTTGGCA 60.885 57.895 16.29 0.00 0.00 4.92
2488 2794 3.187637 CGTTTGACGGCTTGAAGGAAATA 59.812 43.478 0.00 0.00 38.08 1.40
2566 2872 4.446311 GGGTTGACCATATTGGCTACATCT 60.446 45.833 2.12 0.00 42.67 2.90
2623 2929 0.100682 CACGATACACCGTCTCCAGG 59.899 60.000 0.00 0.00 41.29 4.45
2644 2950 0.616371 CCTTCGGACCACCCATGTTA 59.384 55.000 0.00 0.00 34.14 2.41
2747 3053 6.464222 TGTACTTGATAGCCTTGCCATATAC 58.536 40.000 0.00 0.00 0.00 1.47
2748 3054 6.295859 CCTGTACTTGATAGCCTTGCCATATA 60.296 42.308 0.00 0.00 0.00 0.86
3034 3340 3.798878 CCACGTCAACATAGATAGCTGTG 59.201 47.826 2.90 2.90 38.98 3.66
3202 3508 4.390501 GCAACTTTTTGTTTGAACCGTTG 58.609 39.130 0.00 0.00 36.63 4.10
3256 3562 3.199880 AGGACAATTATCAGAAGCCCG 57.800 47.619 0.00 0.00 0.00 6.13
3400 3706 4.633126 CCATTCAGACCTGATGTTAGTGTG 59.367 45.833 0.01 0.00 39.64 3.82
3499 3805 1.244816 CTTTCCCAAAACCTCCGACC 58.755 55.000 0.00 0.00 0.00 4.79
3613 3919 0.319900 GCAGACGTGAAAGGAGCTCA 60.320 55.000 17.19 0.00 0.00 4.26
3655 3961 4.843728 TCCTTTCATCACAGTACCCAATC 58.156 43.478 0.00 0.00 0.00 2.67
3697 4003 2.527100 GTTCCGTTCTCCATGTACTCG 58.473 52.381 0.00 0.00 0.00 4.18
3773 4079 1.282738 TGCTCCAATGCAGATCTCCAA 59.717 47.619 0.00 0.00 38.12 3.53
3820 4126 2.300956 TAATGGCCTTTGCAGAACCA 57.699 45.000 13.96 1.61 40.13 3.67
3940 4246 1.202734 ACTGCAGTGCTGACATGAGTT 60.203 47.619 26.56 0.52 0.00 3.01
4000 4306 1.448189 CTCAGTCAGCTGCTGCCTC 60.448 63.158 24.38 15.98 42.29 4.70
4126 4432 2.419851 CCCTCTCTTCTGCCACTTCATC 60.420 54.545 0.00 0.00 0.00 2.92
4216 4522 1.444553 GCACTTCTCCACCGTCTCG 60.445 63.158 0.00 0.00 0.00 4.04
4285 4591 1.630369 AGCTGCAGGACATACTCCAAA 59.370 47.619 17.12 0.00 42.46 3.28
4372 4678 1.321474 CACCCACATGCTGAACTTGT 58.679 50.000 0.00 0.00 37.13 3.16
4375 4681 1.604593 GGCACCCACATGCTGAACT 60.605 57.895 0.00 0.00 45.38 3.01
4501 4807 1.072505 GCGTTTTCACCTCCCCTCA 59.927 57.895 0.00 0.00 0.00 3.86
4533 4839 1.640670 ACACCTCTACCGGTACCCTAA 59.359 52.381 11.16 0.00 34.94 2.69
4555 4861 5.939883 AGAAAATAAAAATCCAAGGCTTGCC 59.060 36.000 21.77 2.97 0.00 4.52
4573 4879 8.519799 TCTCAGGTAAACTTCAACAAGAAAAT 57.480 30.769 0.00 0.00 35.40 1.82
4687 5001 0.813610 TCCGCTAAATCATGTGCCCG 60.814 55.000 0.00 0.00 0.00 6.13
4695 5009 8.824756 AGAAGATACCTATATCCGCTAAATCA 57.175 34.615 0.00 0.00 38.43 2.57
4752 5070 8.607459 CATCATGATCATCATCATCAGTACATG 58.393 37.037 4.86 0.00 45.26 3.21
4893 5212 3.597086 AACGACCCGGCCTCCTAGT 62.597 63.158 0.00 0.00 0.00 2.57
4931 5265 1.503542 CGCTGAATGTGGGCAACTC 59.496 57.895 0.00 0.00 0.00 3.01
4932 5266 1.973281 CCGCTGAATGTGGGCAACT 60.973 57.895 0.00 0.00 42.43 3.16
4933 5267 1.315257 ATCCGCTGAATGTGGGCAAC 61.315 55.000 0.00 0.00 46.01 4.17
4957 5291 3.247411 GGGTATGCAAAAATAAATGCGCC 59.753 43.478 4.18 0.00 45.47 6.53
4999 5334 1.332375 TTGCTAACGTGAGTGCAAACC 59.668 47.619 12.90 0.00 45.95 3.27
5014 5349 0.752009 ACTCGCGAGGGATCTTGCTA 60.752 55.000 36.93 0.00 45.90 3.49
5019 5354 1.351683 AGGTATACTCGCGAGGGATCT 59.648 52.381 36.93 24.06 33.92 2.75
5024 5359 1.286260 GCCAGGTATACTCGCGAGG 59.714 63.158 36.93 20.38 0.00 4.63
5026 5361 0.826256 ATGGCCAGGTATACTCGCGA 60.826 55.000 13.05 9.26 33.72 5.87
5058 5393 3.885724 TTTGCTATGGGCTTTTTAGGC 57.114 42.857 0.00 0.00 42.39 3.93
5077 5412 4.198087 GCCTGGGCCTCAGTTTTT 57.802 55.556 16.96 0.00 41.83 1.94
5087 5422 3.096495 TGATGGTAGGGCCTGGGC 61.096 66.667 18.53 12.58 38.35 5.36
5088 5423 2.455565 CCTGATGGTAGGGCCTGGG 61.456 68.421 18.53 2.97 38.35 4.45
5089 5424 3.125376 GCCTGATGGTAGGGCCTGG 62.125 68.421 18.53 8.00 39.96 4.45
5090 5425 2.512896 GCCTGATGGTAGGGCCTG 59.487 66.667 18.53 0.00 39.96 4.85
5094 5429 1.807814 AAGTAGGCCTGATGGTAGGG 58.192 55.000 17.99 0.00 38.32 3.53
5095 5430 3.199946 TGAAAAGTAGGCCTGATGGTAGG 59.800 47.826 17.99 0.00 40.95 3.18
5096 5431 4.487714 TGAAAAGTAGGCCTGATGGTAG 57.512 45.455 17.99 0.00 35.27 3.18
5097 5432 4.843728 CTTGAAAAGTAGGCCTGATGGTA 58.156 43.478 17.99 0.00 39.70 3.25
5098 5433 3.690460 CTTGAAAAGTAGGCCTGATGGT 58.310 45.455 17.99 0.00 39.70 3.55
5112 5447 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
5113 5448 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
5122 5457 2.055689 TATCAGATGGGCCGGGCTTG 62.056 60.000 28.80 19.61 0.00 4.01
5123 5458 1.352622 TTATCAGATGGGCCGGGCTT 61.353 55.000 28.80 15.95 0.00 4.35
5124 5459 1.352622 TTTATCAGATGGGCCGGGCT 61.353 55.000 28.80 9.11 0.00 5.19
5125 5460 0.467290 TTTTATCAGATGGGCCGGGC 60.467 55.000 22.00 22.00 0.00 6.13
5126 5461 1.956477 CTTTTTATCAGATGGGCCGGG 59.044 52.381 2.18 0.00 0.00 5.73
5127 5462 1.338020 GCTTTTTATCAGATGGGCCGG 59.662 52.381 0.00 0.00 0.00 6.13
5128 5463 1.338020 GGCTTTTTATCAGATGGGCCG 59.662 52.381 0.00 0.00 0.00 6.13
5129 5464 1.688735 GGGCTTTTTATCAGATGGGCC 59.311 52.381 0.00 0.00 37.82 5.80
5130 5465 2.363359 CAGGGCTTTTTATCAGATGGGC 59.637 50.000 0.00 0.00 0.00 5.36
5131 5466 3.902218 TCAGGGCTTTTTATCAGATGGG 58.098 45.455 0.00 0.00 0.00 4.00
5132 5467 5.920193 TTTCAGGGCTTTTTATCAGATGG 57.080 39.130 0.00 0.00 0.00 3.51
5133 5468 5.809051 GCTTTTCAGGGCTTTTTATCAGATG 59.191 40.000 0.00 0.00 0.00 2.90
5134 5469 5.105187 GGCTTTTCAGGGCTTTTTATCAGAT 60.105 40.000 0.00 0.00 0.00 2.90
5135 5470 4.220602 GGCTTTTCAGGGCTTTTTATCAGA 59.779 41.667 0.00 0.00 0.00 3.27
5136 5471 4.498241 GGCTTTTCAGGGCTTTTTATCAG 58.502 43.478 0.00 0.00 0.00 2.90
5137 5472 3.260632 GGGCTTTTCAGGGCTTTTTATCA 59.739 43.478 0.00 0.00 0.00 2.15
5138 5473 3.515502 AGGGCTTTTCAGGGCTTTTTATC 59.484 43.478 0.00 0.00 0.00 1.75
5139 5474 3.520696 AGGGCTTTTCAGGGCTTTTTAT 58.479 40.909 0.00 0.00 0.00 1.40
5140 5475 2.970987 AGGGCTTTTCAGGGCTTTTTA 58.029 42.857 0.00 0.00 0.00 1.52
5141 5476 1.806496 AGGGCTTTTCAGGGCTTTTT 58.194 45.000 0.00 0.00 0.00 1.94
5142 5477 1.806496 AAGGGCTTTTCAGGGCTTTT 58.194 45.000 0.00 0.00 0.00 2.27
5143 5478 2.529632 CTAAGGGCTTTTCAGGGCTTT 58.470 47.619 0.00 0.00 33.62 3.51
5144 5479 1.272704 CCTAAGGGCTTTTCAGGGCTT 60.273 52.381 0.00 0.00 0.00 4.35
5145 5480 0.332972 CCTAAGGGCTTTTCAGGGCT 59.667 55.000 0.00 0.00 0.00 5.19
5146 5481 0.684479 CCCTAAGGGCTTTTCAGGGC 60.684 60.000 4.44 0.00 39.62 5.19
5147 5482 3.596362 CCCTAAGGGCTTTTCAGGG 57.404 57.895 3.08 3.08 40.10 4.45
5178 5513 0.323087 TTTTAAGGAAGAGGCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
5179 5514 2.024414 CATTTTAAGGAAGAGGCCCGG 58.976 52.381 0.00 0.00 0.00 5.73
5180 5515 1.405463 GCATTTTAAGGAAGAGGCCCG 59.595 52.381 0.00 0.00 0.00 6.13
5181 5516 1.757118 GGCATTTTAAGGAAGAGGCCC 59.243 52.381 0.00 0.00 34.17 5.80
5182 5517 2.456577 TGGCATTTTAAGGAAGAGGCC 58.543 47.619 0.00 0.00 40.51 5.19
5183 5518 4.743057 ATTGGCATTTTAAGGAAGAGGC 57.257 40.909 0.00 0.00 0.00 4.70
5184 5519 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
5185 5520 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
5186 5521 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
5199 5534 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
5200 5535 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
5201 5536 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
5202 5537 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
5203 5538 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
5204 5539 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
5209 5544 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
5210 5545 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
5234 5569 1.228124 TGAGTTTTGAGCCCACCGG 60.228 57.895 0.00 0.00 0.00 5.28
5235 5570 1.237285 CCTGAGTTTTGAGCCCACCG 61.237 60.000 0.00 0.00 0.00 4.94
5236 5571 1.527433 GCCTGAGTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
5237 5572 1.527433 GGCCTGAGTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
5238 5573 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
5239 5574 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
5240 5575 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
5241 5576 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
5242 5577 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
5243 5578 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
5267 5602 4.738998 TGATGGGCTTGCCCGTGG 62.739 66.667 28.10 0.00 0.00 4.94
5268 5603 3.136123 CTGATGGGCTTGCCCGTG 61.136 66.667 28.10 12.33 0.00 4.94
5269 5604 4.431131 CCTGATGGGCTTGCCCGT 62.431 66.667 24.00 24.00 0.00 5.28
5286 5621 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
5287 5622 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
5288 5623 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
5295 5630 0.756815 GGCCTGGCCCTAAAATCCAG 60.757 60.000 27.77 0.00 44.06 3.86
5296 5631 1.309688 GGCCTGGCCCTAAAATCCA 59.690 57.895 27.77 0.00 44.06 3.41
5297 5632 4.277552 GGCCTGGCCCTAAAATCC 57.722 61.111 27.77 0.00 44.06 3.01
5329 5664 4.227134 CTGGCCATCTCCGGTCCG 62.227 72.222 5.51 3.60 0.00 4.79
5330 5665 3.866582 CCTGGCCATCTCCGGTCC 61.867 72.222 5.51 0.00 0.00 4.46
5331 5666 2.764128 TCCTGGCCATCTCCGGTC 60.764 66.667 5.51 0.00 0.00 4.79
5332 5667 2.238319 TAGTCCTGGCCATCTCCGGT 62.238 60.000 5.51 0.00 0.00 5.28
5333 5668 1.457643 TAGTCCTGGCCATCTCCGG 60.458 63.158 5.51 3.08 0.00 5.14
5334 5669 0.757188 AGTAGTCCTGGCCATCTCCG 60.757 60.000 5.51 0.00 0.00 4.63
5335 5670 1.044611 GAGTAGTCCTGGCCATCTCC 58.955 60.000 5.51 0.00 0.00 3.71
5336 5671 0.671251 CGAGTAGTCCTGGCCATCTC 59.329 60.000 5.51 6.98 0.00 2.75
5337 5672 1.395826 GCGAGTAGTCCTGGCCATCT 61.396 60.000 5.51 8.22 38.85 2.90
5338 5673 1.068250 GCGAGTAGTCCTGGCCATC 59.932 63.158 5.51 0.00 38.85 3.51
5339 5674 2.786495 CGCGAGTAGTCCTGGCCAT 61.786 63.158 5.51 0.00 41.48 4.40
5340 5675 3.449227 CGCGAGTAGTCCTGGCCA 61.449 66.667 4.71 4.71 41.48 5.36
5341 5676 3.127352 CTCGCGAGTAGTCCTGGCC 62.127 68.421 27.79 0.00 41.48 5.36
5342 5677 2.054140 CTCTCGCGAGTAGTCCTGGC 62.054 65.000 33.33 0.00 41.14 4.85
5343 5678 0.462225 TCTCTCGCGAGTAGTCCTGG 60.462 60.000 33.33 14.83 38.45 4.45
5344 5679 1.370609 TTCTCTCGCGAGTAGTCCTG 58.629 55.000 33.33 16.09 38.45 3.86
5345 5680 1.738908 GTTTCTCTCGCGAGTAGTCCT 59.261 52.381 33.33 0.00 38.45 3.85
5346 5681 1.467734 TGTTTCTCTCGCGAGTAGTCC 59.532 52.381 33.33 20.09 38.45 3.85
5347 5682 2.776330 CTGTTTCTCTCGCGAGTAGTC 58.224 52.381 33.33 20.70 38.45 2.59
5348 5683 1.135632 GCTGTTTCTCTCGCGAGTAGT 60.136 52.381 33.33 0.00 38.45 2.73
5349 5684 1.131504 AGCTGTTTCTCTCGCGAGTAG 59.868 52.381 33.33 26.81 38.45 2.57
5350 5685 1.135660 CAGCTGTTTCTCTCGCGAGTA 60.136 52.381 33.33 20.96 38.45 2.59
5351 5686 0.387878 CAGCTGTTTCTCTCGCGAGT 60.388 55.000 33.33 10.14 38.45 4.18
5352 5687 1.681945 GCAGCTGTTTCTCTCGCGAG 61.682 60.000 30.03 30.03 38.67 5.03
5353 5688 1.734477 GCAGCTGTTTCTCTCGCGA 60.734 57.895 16.64 9.26 0.00 5.87
5354 5689 1.735920 AGCAGCTGTTTCTCTCGCG 60.736 57.895 16.64 0.00 0.00 5.87
5355 5690 0.948141 ACAGCAGCTGTTTCTCTCGC 60.948 55.000 23.11 0.00 42.59 5.03
5356 5691 3.207677 ACAGCAGCTGTTTCTCTCG 57.792 52.632 23.11 0.00 42.59 4.04
5377 5712 3.809374 GATGAACCCTAGGCGGCGG 62.809 68.421 9.78 0.77 0.00 6.13
5378 5713 2.280186 GATGAACCCTAGGCGGCG 60.280 66.667 2.05 0.51 0.00 6.46
5379 5714 2.111251 GGATGAACCCTAGGCGGC 59.889 66.667 2.05 0.00 0.00 6.53
5388 5723 1.429148 GCGATGACGTGGGATGAACC 61.429 60.000 0.00 0.00 41.98 3.62
5389 5724 0.460284 AGCGATGACGTGGGATGAAC 60.460 55.000 0.00 0.00 41.98 3.18
5390 5725 0.460109 CAGCGATGACGTGGGATGAA 60.460 55.000 0.00 0.00 41.98 2.57
5391 5726 1.141665 CAGCGATGACGTGGGATGA 59.858 57.895 0.00 0.00 41.98 2.92
5392 5727 0.740868 AACAGCGATGACGTGGGATG 60.741 55.000 8.12 0.00 41.98 3.51
5393 5728 0.740868 CAACAGCGATGACGTGGGAT 60.741 55.000 8.12 0.00 41.98 3.85
5394 5729 1.374125 CAACAGCGATGACGTGGGA 60.374 57.895 8.12 0.00 41.98 4.37
5395 5730 3.027170 GCAACAGCGATGACGTGGG 62.027 63.158 8.12 0.00 41.98 4.61
5396 5731 2.476051 GCAACAGCGATGACGTGG 59.524 61.111 8.12 0.00 41.98 4.94
5397 5732 0.735978 TAGGCAACAGCGATGACGTG 60.736 55.000 8.12 3.37 39.93 4.49
5398 5733 0.458543 CTAGGCAACAGCGATGACGT 60.459 55.000 8.12 0.39 39.93 4.34
5399 5734 1.148157 CCTAGGCAACAGCGATGACG 61.148 60.000 8.12 0.00 40.54 4.35
5400 5735 0.811616 CCCTAGGCAACAGCGATGAC 60.812 60.000 8.12 0.00 41.41 3.06
5401 5736 1.264749 ACCCTAGGCAACAGCGATGA 61.265 55.000 8.12 0.00 41.41 2.92
5402 5737 0.392998 AACCCTAGGCAACAGCGATG 60.393 55.000 2.05 0.00 41.41 3.84
5403 5738 0.107654 GAACCCTAGGCAACAGCGAT 60.108 55.000 2.05 0.00 41.41 4.58
5404 5739 1.295423 GAACCCTAGGCAACAGCGA 59.705 57.895 2.05 0.00 41.41 4.93
5405 5740 1.745489 GGAACCCTAGGCAACAGCG 60.745 63.158 2.05 0.00 41.41 5.18
5406 5741 0.393132 GAGGAACCCTAGGCAACAGC 60.393 60.000 2.05 0.00 33.21 4.40
5407 5742 0.253327 GGAGGAACCCTAGGCAACAG 59.747 60.000 2.05 0.00 33.21 3.16
5408 5743 2.383608 GGAGGAACCCTAGGCAACA 58.616 57.895 2.05 0.00 33.21 3.33
5418 5753 4.754667 GACGGCGTGGGAGGAACC 62.755 72.222 21.19 0.00 38.08 3.62
5419 5754 3.310860 ATGACGGCGTGGGAGGAAC 62.311 63.158 21.19 0.00 0.00 3.62
5420 5755 3.000819 ATGACGGCGTGGGAGGAA 61.001 61.111 21.19 0.00 0.00 3.36
5421 5756 3.458163 GATGACGGCGTGGGAGGA 61.458 66.667 21.19 0.00 0.00 3.71
5422 5757 3.432051 GAGATGACGGCGTGGGAGG 62.432 68.421 21.19 0.00 0.00 4.30
5423 5758 2.105128 GAGATGACGGCGTGGGAG 59.895 66.667 21.19 0.00 0.00 4.30
5424 5759 3.458163 GGAGATGACGGCGTGGGA 61.458 66.667 21.19 0.24 0.00 4.37
5425 5760 4.873129 CGGAGATGACGGCGTGGG 62.873 72.222 21.19 0.00 0.00 4.61
5431 5766 3.917760 GGGAGGCGGAGATGACGG 61.918 72.222 0.00 0.00 0.00 4.79
5432 5767 2.835431 AGGGAGGCGGAGATGACG 60.835 66.667 0.00 0.00 0.00 4.35
5433 5768 2.503382 GGAGGGAGGCGGAGATGAC 61.503 68.421 0.00 0.00 0.00 3.06
5434 5769 2.123251 GGAGGGAGGCGGAGATGA 60.123 66.667 0.00 0.00 0.00 2.92
5435 5770 2.123077 AGGAGGGAGGCGGAGATG 60.123 66.667 0.00 0.00 0.00 2.90
5436 5771 2.200092 GAGGAGGGAGGCGGAGAT 59.800 66.667 0.00 0.00 0.00 2.75
5437 5772 3.024356 AGAGGAGGGAGGCGGAGA 61.024 66.667 0.00 0.00 0.00 3.71
5438 5773 2.520741 GAGAGGAGGGAGGCGGAG 60.521 72.222 0.00 0.00 0.00 4.63
5439 5774 2.169590 AAAGAGAGGAGGGAGGCGGA 62.170 60.000 0.00 0.00 0.00 5.54
5440 5775 1.268283 AAAAGAGAGGAGGGAGGCGG 61.268 60.000 0.00 0.00 0.00 6.13
5441 5776 0.107945 CAAAAGAGAGGAGGGAGGCG 60.108 60.000 0.00 0.00 0.00 5.52
5442 5777 0.988063 ACAAAAGAGAGGAGGGAGGC 59.012 55.000 0.00 0.00 0.00 4.70
5443 5778 3.416156 CAAACAAAAGAGAGGAGGGAGG 58.584 50.000 0.00 0.00 0.00 4.30
5444 5779 3.416156 CCAAACAAAAGAGAGGAGGGAG 58.584 50.000 0.00 0.00 0.00 4.30
5445 5780 2.489073 GCCAAACAAAAGAGAGGAGGGA 60.489 50.000 0.00 0.00 0.00 4.20
5446 5781 1.889170 GCCAAACAAAAGAGAGGAGGG 59.111 52.381 0.00 0.00 0.00 4.30
5447 5782 1.537202 CGCCAAACAAAAGAGAGGAGG 59.463 52.381 0.00 0.00 0.00 4.30
5448 5783 1.537202 CCGCCAAACAAAAGAGAGGAG 59.463 52.381 0.00 0.00 0.00 3.69
5449 5784 1.604604 CCGCCAAACAAAAGAGAGGA 58.395 50.000 0.00 0.00 0.00 3.71
5450 5785 0.039165 GCCGCCAAACAAAAGAGAGG 60.039 55.000 0.00 0.00 0.00 3.69
5451 5786 0.954452 AGCCGCCAAACAAAAGAGAG 59.046 50.000 0.00 0.00 0.00 3.20
5452 5787 1.877443 GTAGCCGCCAAACAAAAGAGA 59.123 47.619 0.00 0.00 0.00 3.10
5453 5788 1.606668 TGTAGCCGCCAAACAAAAGAG 59.393 47.619 0.00 0.00 0.00 2.85
5454 5789 1.681538 TGTAGCCGCCAAACAAAAGA 58.318 45.000 0.00 0.00 0.00 2.52
5455 5790 2.595386 GATGTAGCCGCCAAACAAAAG 58.405 47.619 0.00 0.00 0.00 2.27
5456 5791 1.068885 CGATGTAGCCGCCAAACAAAA 60.069 47.619 0.00 0.00 0.00 2.44
5457 5792 0.519519 CGATGTAGCCGCCAAACAAA 59.480 50.000 0.00 0.00 0.00 2.83
5458 5793 1.302383 CCGATGTAGCCGCCAAACAA 61.302 55.000 0.00 0.00 0.00 2.83
5459 5794 1.743623 CCGATGTAGCCGCCAAACA 60.744 57.895 0.00 0.00 0.00 2.83
5460 5795 3.098555 CCGATGTAGCCGCCAAAC 58.901 61.111 0.00 0.00 0.00 2.93
5461 5796 2.822255 GCCGATGTAGCCGCCAAA 60.822 61.111 0.00 0.00 0.00 3.28
5462 5797 4.089239 TGCCGATGTAGCCGCCAA 62.089 61.111 0.00 0.00 0.00 4.52
5463 5798 4.529219 CTGCCGATGTAGCCGCCA 62.529 66.667 0.00 0.00 0.00 5.69
5469 5804 1.539388 CTCCTCTAGCTGCCGATGTAG 59.461 57.143 0.00 0.00 0.00 2.74
5470 5805 1.133761 ACTCCTCTAGCTGCCGATGTA 60.134 52.381 0.00 0.00 0.00 2.29
5471 5806 0.396417 ACTCCTCTAGCTGCCGATGT 60.396 55.000 0.00 0.00 0.00 3.06
5472 5807 1.539388 CTACTCCTCTAGCTGCCGATG 59.461 57.143 0.00 0.00 0.00 3.84
5473 5808 1.546773 CCTACTCCTCTAGCTGCCGAT 60.547 57.143 0.00 0.00 0.00 4.18
5474 5809 0.179015 CCTACTCCTCTAGCTGCCGA 60.179 60.000 0.00 0.00 0.00 5.54
5475 5810 1.175983 CCCTACTCCTCTAGCTGCCG 61.176 65.000 0.00 0.00 0.00 5.69
5476 5811 0.830023 CCCCTACTCCTCTAGCTGCC 60.830 65.000 0.00 0.00 0.00 4.85
5477 5812 1.468506 GCCCCTACTCCTCTAGCTGC 61.469 65.000 0.00 0.00 0.00 5.25
5478 5813 0.830023 GGCCCCTACTCCTCTAGCTG 60.830 65.000 0.00 0.00 0.00 4.24
5479 5814 1.544703 GGCCCCTACTCCTCTAGCT 59.455 63.158 0.00 0.00 0.00 3.32
5480 5815 1.534476 GGGCCCCTACTCCTCTAGC 60.534 68.421 12.23 0.00 0.00 3.42
5481 5816 1.228613 CGGGCCCCTACTCCTCTAG 60.229 68.421 18.66 0.00 0.00 2.43
5482 5817 2.775741 CCGGGCCCCTACTCCTCTA 61.776 68.421 18.66 0.00 0.00 2.43
5483 5818 4.159108 CCGGGCCCCTACTCCTCT 62.159 72.222 18.66 0.00 0.00 3.69
5495 5830 4.699522 ACAACGAAGAGGCCGGGC 62.700 66.667 22.67 22.67 0.00 6.13
5496 5831 2.032071 AACAACGAAGAGGCCGGG 59.968 61.111 2.18 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.