Multiple sequence alignment - TraesCS7D01G338700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G338700 chr7D 100.000 7113 0 0 1 7113 432496835 432489723 0.000000e+00 13136
1 TraesCS7D01G338700 chr7D 91.221 467 37 3 44 508 536485003 536485467 3.620000e-177 632
2 TraesCS7D01G338700 chr7D 87.447 470 48 11 45 509 115423213 115423676 1.360000e-146 531
3 TraesCS7D01G338700 chr7D 100.000 59 0 0 5189 5247 432491594 432491536 7.540000e-20 110
4 TraesCS7D01G338700 chr7D 100.000 59 0 0 5242 5300 432491647 432491589 7.540000e-20 110
5 TraesCS7D01G338700 chr7B 94.803 3906 133 25 1352 5247 450267361 450271206 0.000000e+00 6024
6 TraesCS7D01G338700 chr7B 97.228 1010 24 2 5239 6244 450271145 450272154 0.000000e+00 1707
7 TraesCS7D01G338700 chr7B 91.194 829 40 12 509 1323 450266310 450267119 0.000000e+00 1096
8 TraesCS7D01G338700 chr7B 89.066 439 34 12 6648 7080 450272576 450273006 3.780000e-147 532
9 TraesCS7D01G338700 chr7B 88.643 361 19 10 6290 6647 450272166 450272507 3.070000e-113 420
10 TraesCS7D01G338700 chr7A 94.282 3218 144 28 2052 5248 500326006 500329204 0.000000e+00 4887
11 TraesCS7D01G338700 chr7A 94.449 1189 58 5 5242 6427 500329145 500330328 0.000000e+00 1823
12 TraesCS7D01G338700 chr7A 90.506 1264 74 22 726 1949 500324751 500326008 0.000000e+00 1628
13 TraesCS7D01G338700 chr7A 87.965 457 43 9 60 514 550280652 550280206 4.890000e-146 529
14 TraesCS7D01G338700 chr7A 83.607 549 49 20 6450 6976 500330390 500330919 1.800000e-130 477
15 TraesCS7D01G338700 chr7A 84.074 270 33 6 3374 3643 500327767 500328026 1.180000e-62 252
16 TraesCS7D01G338700 chr7A 85.385 130 18 1 6944 7072 211274137 211274266 4.480000e-27 134
17 TraesCS7D01G338700 chr7A 85.385 130 18 1 6944 7072 699801189 699801060 4.480000e-27 134
18 TraesCS7D01G338700 chr4A 89.293 467 40 8 44 508 252874660 252875118 1.720000e-160 577
19 TraesCS7D01G338700 chr2A 88.172 465 53 2 45 508 115054667 115055130 2.900000e-153 553
20 TraesCS7D01G338700 chr2A 87.957 465 53 3 45 508 115034992 115035454 4.850000e-151 545
21 TraesCS7D01G338700 chr2A 95.876 97 4 0 1958 2054 776163172 776163076 2.660000e-34 158
22 TraesCS7D01G338700 chr3A 88.210 458 46 8 55 509 112404126 112404578 2.260000e-149 540
23 TraesCS7D01G338700 chr4D 88.027 451 47 6 61 508 405211587 405212033 1.760000e-145 527
24 TraesCS7D01G338700 chr2D 87.152 467 55 5 43 506 629988024 629987560 6.320000e-145 525
25 TraesCS7D01G338700 chr2D 92.523 107 8 0 1948 2054 388818757 388818863 3.440000e-33 154
26 TraesCS7D01G338700 chr3D 93.458 107 7 0 1948 2054 513957384 513957278 7.390000e-35 159
27 TraesCS7D01G338700 chr3D 92.593 108 8 0 1947 2054 579138799 579138692 9.550000e-34 156
28 TraesCS7D01G338700 chr6A 91.743 109 9 0 1947 2055 502244335 502244227 1.240000e-32 152
29 TraesCS7D01G338700 chr1A 90.265 113 10 1 1946 2058 104946166 104946055 5.750000e-31 147
30 TraesCS7D01G338700 chr3B 89.565 115 11 1 1948 2061 8054768 8054654 2.070000e-30 145
31 TraesCS7D01G338700 chr6B 88.235 119 13 1 1941 2058 301608792 301608674 2.680000e-29 141
32 TraesCS7D01G338700 chr5B 84.615 130 19 1 6944 7072 455629858 455629729 2.080000e-25 128
33 TraesCS7D01G338700 chr1B 82.353 136 22 2 6944 7077 377805141 377805006 4.510000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G338700 chr7D 432489723 432496835 7112 True 13136.0 13136 100.0000 1 7113 1 chr7D.!!$R1 7112
1 TraesCS7D01G338700 chr7B 450266310 450273006 6696 False 1955.8 6024 92.1868 509 7080 5 chr7B.!!$F1 6571
2 TraesCS7D01G338700 chr7A 500324751 500330919 6168 False 1813.4 4887 89.3836 726 6976 5 chr7A.!!$F2 6250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.035317 AGGTTTTTACCGGTCGGACC 59.965 55.000 12.40 17.38 38.96 4.46 F
422 423 0.109781 CCGGTCTGATTGCAAAACGG 60.110 55.000 10.70 10.70 0.00 4.44 F
530 531 0.249699 TGTACACACGCACTTCAGGG 60.250 55.000 0.00 0.00 0.00 4.45 F
1804 2056 1.070601 AGGCTTTGAACATGTTTGGGC 59.929 47.619 13.36 13.87 0.00 5.36 F
2407 2667 0.106268 TGAGTTGGGTGCCATGTGTT 60.106 50.000 0.00 0.00 31.53 3.32 F
2855 3138 1.462670 CTCTGCCTTCTCTTTTGACGC 59.537 52.381 0.00 0.00 0.00 5.19 F
3768 4062 0.456628 GAGGTAGTGTCGAGGAAGCC 59.543 60.000 0.00 0.00 0.00 4.35 F
4008 4302 1.069204 CACTGCGGATACCAGCATAGT 59.931 52.381 0.00 0.00 42.95 2.12 F
5588 5887 0.976641 TTCCAGATCCGTTGCAGAGT 59.023 50.000 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1171 1188 0.322546 TGACGACTAGGCTGCTGAGA 60.323 55.000 0.00 0.00 0.00 3.27 R
2382 2642 0.179020 TGGCACCCAACTCACTCAAG 60.179 55.000 0.00 0.00 0.00 3.02 R
2407 2667 2.735259 AGGGGTTCTCAAGGTAAGGA 57.265 50.000 0.00 0.00 0.00 3.36 R
3558 3850 0.464036 TATTCCGGAATCTGCAGCGT 59.536 50.000 32.43 9.69 32.50 5.07 R
3768 4062 1.010125 CGCCAAAACACTGACCACG 60.010 57.895 0.00 0.00 0.00 4.94 R
4442 4741 0.530211 GCCAATGCATATGCGCCAAA 60.530 50.000 22.21 5.15 45.83 3.28 R
5588 5887 0.466555 CACCACGGAAACCCCTTTCA 60.467 55.000 0.00 0.00 38.04 2.69 R
5912 6211 2.465097 GATCATCTCGACCCTCGCCG 62.465 65.000 0.00 0.00 40.21 6.46 R
6850 7289 0.771755 GGACCCTTCCCAAGTCTTGT 59.228 55.000 11.61 0.00 35.57 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.699410 TGAATTTATCATTCACCTTAATCTGGT 57.301 29.630 0.00 0.00 33.55 4.00
34 35 9.559732 TTATCATTCACCTTAATCTGGTATGTG 57.440 33.333 0.00 0.00 35.80 3.21
35 36 6.957631 TCATTCACCTTAATCTGGTATGTGT 58.042 36.000 0.00 0.00 35.80 3.72
36 37 6.823182 TCATTCACCTTAATCTGGTATGTGTG 59.177 38.462 0.00 0.00 35.80 3.82
37 38 6.367374 TTCACCTTAATCTGGTATGTGTGA 57.633 37.500 0.00 0.00 35.80 3.58
38 39 6.560003 TCACCTTAATCTGGTATGTGTGAT 57.440 37.500 0.00 0.00 35.80 3.06
39 40 6.957631 TCACCTTAATCTGGTATGTGTGATT 58.042 36.000 0.00 0.00 35.80 2.57
40 41 6.823182 TCACCTTAATCTGGTATGTGTGATTG 59.177 38.462 0.00 0.00 35.80 2.67
41 42 6.599244 CACCTTAATCTGGTATGTGTGATTGT 59.401 38.462 0.00 0.00 35.80 2.71
42 43 7.768582 CACCTTAATCTGGTATGTGTGATTGTA 59.231 37.037 0.00 0.00 35.80 2.41
43 44 7.769044 ACCTTAATCTGGTATGTGTGATTGTAC 59.231 37.037 0.00 0.00 35.80 2.90
44 45 7.226720 CCTTAATCTGGTATGTGTGATTGTACC 59.773 40.741 0.00 0.00 37.65 3.34
45 46 5.692115 ATCTGGTATGTGTGATTGTACCA 57.308 39.130 3.40 3.40 43.06 3.25
46 47 5.692115 TCTGGTATGTGTGATTGTACCAT 57.308 39.130 3.81 0.00 43.92 3.55
47 48 6.800072 TCTGGTATGTGTGATTGTACCATA 57.200 37.500 3.81 0.00 43.92 2.74
48 49 6.816136 TCTGGTATGTGTGATTGTACCATAG 58.184 40.000 3.81 0.00 43.92 2.23
49 50 6.382859 TCTGGTATGTGTGATTGTACCATAGT 59.617 38.462 3.81 0.00 43.92 2.12
50 51 6.953101 TGGTATGTGTGATTGTACCATAGTT 58.047 36.000 0.00 0.00 41.08 2.24
51 52 7.398829 TGGTATGTGTGATTGTACCATAGTTT 58.601 34.615 0.00 0.00 41.08 2.66
52 53 8.541234 TGGTATGTGTGATTGTACCATAGTTTA 58.459 33.333 0.00 0.00 41.08 2.01
53 54 9.386010 GGTATGTGTGATTGTACCATAGTTTAA 57.614 33.333 0.00 0.00 37.21 1.52
83 84 2.663279 CGAAAAGGTTGTCGGTTCAG 57.337 50.000 0.00 0.00 33.62 3.02
84 85 1.263217 CGAAAAGGTTGTCGGTTCAGG 59.737 52.381 0.00 0.00 33.62 3.86
85 86 2.294979 GAAAAGGTTGTCGGTTCAGGT 58.705 47.619 0.00 0.00 0.00 4.00
86 87 2.430248 AAAGGTTGTCGGTTCAGGTT 57.570 45.000 0.00 0.00 0.00 3.50
87 88 2.430248 AAGGTTGTCGGTTCAGGTTT 57.570 45.000 0.00 0.00 0.00 3.27
88 89 2.430248 AGGTTGTCGGTTCAGGTTTT 57.570 45.000 0.00 0.00 0.00 2.43
89 90 2.730382 AGGTTGTCGGTTCAGGTTTTT 58.270 42.857 0.00 0.00 0.00 1.94
90 91 3.888583 AGGTTGTCGGTTCAGGTTTTTA 58.111 40.909 0.00 0.00 0.00 1.52
91 92 3.628942 AGGTTGTCGGTTCAGGTTTTTAC 59.371 43.478 0.00 0.00 0.00 2.01
92 93 3.243168 GGTTGTCGGTTCAGGTTTTTACC 60.243 47.826 0.00 0.00 0.00 2.85
97 98 1.532437 GGTTCAGGTTTTTACCGGTCG 59.468 52.381 12.40 0.00 34.28 4.79
98 99 1.532437 GTTCAGGTTTTTACCGGTCGG 59.468 52.381 12.40 7.97 42.03 4.79
99 100 1.047002 TCAGGTTTTTACCGGTCGGA 58.953 50.000 12.40 0.00 38.96 4.55
100 101 1.150827 CAGGTTTTTACCGGTCGGAC 58.849 55.000 12.40 6.03 38.96 4.79
101 102 0.035317 AGGTTTTTACCGGTCGGACC 59.965 55.000 12.40 17.38 38.96 4.46
123 124 2.922779 GGTTCACCGGTTCGATTGT 58.077 52.632 2.97 0.00 0.00 2.71
124 125 0.794473 GGTTCACCGGTTCGATTGTC 59.206 55.000 2.97 0.00 0.00 3.18
125 126 0.437295 GTTCACCGGTTCGATTGTCG 59.563 55.000 2.97 0.00 42.10 4.35
126 127 0.668096 TTCACCGGTTCGATTGTCGG 60.668 55.000 2.97 12.49 46.95 4.79
128 129 3.776656 CCGGTTCGATTGTCGGTC 58.223 61.111 0.00 0.00 40.88 4.79
129 130 1.214589 CCGGTTCGATTGTCGGTCT 59.785 57.895 0.00 0.00 40.88 3.85
130 131 0.389426 CCGGTTCGATTGTCGGTCTT 60.389 55.000 0.00 0.00 40.88 3.01
131 132 1.425412 CGGTTCGATTGTCGGTCTTT 58.575 50.000 0.00 0.00 40.88 2.52
132 133 1.796459 CGGTTCGATTGTCGGTCTTTT 59.204 47.619 0.00 0.00 40.88 2.27
133 134 2.988493 CGGTTCGATTGTCGGTCTTTTA 59.012 45.455 0.00 0.00 40.88 1.52
134 135 3.429543 CGGTTCGATTGTCGGTCTTTTAA 59.570 43.478 0.00 0.00 40.88 1.52
135 136 4.433805 CGGTTCGATTGTCGGTCTTTTAAG 60.434 45.833 0.00 0.00 40.88 1.85
136 137 4.392216 GTTCGATTGTCGGTCTTTTAAGC 58.608 43.478 0.00 0.00 40.88 3.09
137 138 3.655486 TCGATTGTCGGTCTTTTAAGCA 58.345 40.909 0.00 0.00 40.88 3.91
138 139 4.059511 TCGATTGTCGGTCTTTTAAGCAA 58.940 39.130 0.00 0.00 40.88 3.91
139 140 4.693566 TCGATTGTCGGTCTTTTAAGCAAT 59.306 37.500 0.00 0.00 40.88 3.56
140 141 5.870433 TCGATTGTCGGTCTTTTAAGCAATA 59.130 36.000 0.00 0.00 40.88 1.90
141 142 6.369340 TCGATTGTCGGTCTTTTAAGCAATAA 59.631 34.615 0.00 0.00 40.88 1.40
142 143 7.018826 CGATTGTCGGTCTTTTAAGCAATAAA 58.981 34.615 0.00 0.00 36.00 1.40
143 144 7.535940 CGATTGTCGGTCTTTTAAGCAATAAAA 59.464 33.333 7.10 7.10 37.39 1.52
144 145 9.353999 GATTGTCGGTCTTTTAAGCAATAAAAT 57.646 29.630 7.61 0.00 41.42 1.82
230 231 3.955650 TGTAGTGGACCAGAAAGTAGC 57.044 47.619 0.00 0.00 0.00 3.58
231 232 3.236047 TGTAGTGGACCAGAAAGTAGCA 58.764 45.455 0.00 0.00 0.00 3.49
232 233 3.838317 TGTAGTGGACCAGAAAGTAGCAT 59.162 43.478 0.00 0.00 0.00 3.79
233 234 5.020795 TGTAGTGGACCAGAAAGTAGCATA 58.979 41.667 0.00 0.00 0.00 3.14
234 235 5.482526 TGTAGTGGACCAGAAAGTAGCATAA 59.517 40.000 0.00 0.00 0.00 1.90
235 236 4.833390 AGTGGACCAGAAAGTAGCATAAC 58.167 43.478 0.00 0.00 0.00 1.89
236 237 3.939592 GTGGACCAGAAAGTAGCATAACC 59.060 47.826 0.00 0.00 0.00 2.85
237 238 3.195661 GGACCAGAAAGTAGCATAACCG 58.804 50.000 0.00 0.00 0.00 4.44
238 239 3.118884 GGACCAGAAAGTAGCATAACCGA 60.119 47.826 0.00 0.00 0.00 4.69
239 240 4.113354 GACCAGAAAGTAGCATAACCGAG 58.887 47.826 0.00 0.00 0.00 4.63
240 241 3.514309 ACCAGAAAGTAGCATAACCGAGT 59.486 43.478 0.00 0.00 0.00 4.18
241 242 4.020485 ACCAGAAAGTAGCATAACCGAGTT 60.020 41.667 0.00 0.00 0.00 3.01
242 243 4.330074 CCAGAAAGTAGCATAACCGAGTTG 59.670 45.833 0.23 0.00 0.00 3.16
243 244 4.330074 CAGAAAGTAGCATAACCGAGTTGG 59.670 45.833 0.00 0.00 46.41 3.77
252 253 4.235731 CCGAGTTGGTTATGGGCC 57.764 61.111 0.00 0.00 0.00 5.80
253 254 1.817941 CCGAGTTGGTTATGGGCCG 60.818 63.158 0.00 0.00 0.00 6.13
254 255 1.078708 CGAGTTGGTTATGGGCCGT 60.079 57.895 2.58 2.58 0.00 5.68
255 256 1.366111 CGAGTTGGTTATGGGCCGTG 61.366 60.000 8.97 0.00 0.00 4.94
256 257 1.001393 AGTTGGTTATGGGCCGTGG 60.001 57.895 8.97 0.00 0.00 4.94
257 258 2.049767 GTTGGTTATGGGCCGTGGG 61.050 63.158 8.97 0.00 0.00 4.61
276 277 4.937431 GGGCCCCGCATACTGCTC 62.937 72.222 12.23 0.00 42.25 4.26
277 278 4.175337 GGCCCCGCATACTGCTCA 62.175 66.667 0.00 0.00 42.25 4.26
278 279 2.124736 GCCCCGCATACTGCTCAA 60.125 61.111 0.00 0.00 42.25 3.02
279 280 1.748879 GCCCCGCATACTGCTCAAA 60.749 57.895 0.00 0.00 42.25 2.69
280 281 1.993369 GCCCCGCATACTGCTCAAAC 61.993 60.000 0.00 0.00 42.25 2.93
281 282 0.676466 CCCCGCATACTGCTCAAACA 60.676 55.000 0.00 0.00 42.25 2.83
282 283 1.382522 CCCGCATACTGCTCAAACAT 58.617 50.000 0.00 0.00 42.25 2.71
283 284 1.331756 CCCGCATACTGCTCAAACATC 59.668 52.381 0.00 0.00 42.25 3.06
284 285 2.283298 CCGCATACTGCTCAAACATCT 58.717 47.619 0.00 0.00 42.25 2.90
285 286 2.679837 CCGCATACTGCTCAAACATCTT 59.320 45.455 0.00 0.00 42.25 2.40
286 287 3.486375 CCGCATACTGCTCAAACATCTTG 60.486 47.826 0.00 0.00 42.25 3.02
287 288 3.486375 CGCATACTGCTCAAACATCTTGG 60.486 47.826 0.00 0.00 42.25 3.61
288 289 3.181493 GCATACTGCTCAAACATCTTGGG 60.181 47.826 0.00 0.00 40.96 4.12
289 290 2.957402 ACTGCTCAAACATCTTGGGA 57.043 45.000 0.00 0.00 0.00 4.37
290 291 3.446442 ACTGCTCAAACATCTTGGGAT 57.554 42.857 0.00 0.00 0.00 3.85
291 292 3.350833 ACTGCTCAAACATCTTGGGATC 58.649 45.455 0.00 0.00 0.00 3.36
292 293 3.245016 ACTGCTCAAACATCTTGGGATCA 60.245 43.478 0.00 0.00 0.00 2.92
293 294 3.760151 CTGCTCAAACATCTTGGGATCAA 59.240 43.478 0.00 0.00 0.00 2.57
294 295 4.151121 TGCTCAAACATCTTGGGATCAAA 58.849 39.130 0.00 0.00 31.77 2.69
295 296 4.773674 TGCTCAAACATCTTGGGATCAAAT 59.226 37.500 0.00 0.00 31.77 2.32
296 297 5.246656 TGCTCAAACATCTTGGGATCAAATT 59.753 36.000 0.00 0.00 31.77 1.82
297 298 5.809051 GCTCAAACATCTTGGGATCAAATTC 59.191 40.000 0.00 0.00 31.77 2.17
298 299 6.284891 TCAAACATCTTGGGATCAAATTCC 57.715 37.500 0.00 0.00 34.83 3.01
299 300 5.779260 TCAAACATCTTGGGATCAAATTCCA 59.221 36.000 0.00 0.00 37.53 3.53
300 301 5.665916 AACATCTTGGGATCAAATTCCAC 57.334 39.130 0.00 0.00 37.53 4.02
301 302 4.939255 ACATCTTGGGATCAAATTCCACT 58.061 39.130 0.00 0.00 37.53 4.00
302 303 5.336102 ACATCTTGGGATCAAATTCCACTT 58.664 37.500 0.00 0.00 37.53 3.16
303 304 5.420104 ACATCTTGGGATCAAATTCCACTTC 59.580 40.000 0.00 0.00 37.53 3.01
304 305 5.261040 TCTTGGGATCAAATTCCACTTCT 57.739 39.130 0.00 0.00 37.53 2.85
305 306 5.256474 TCTTGGGATCAAATTCCACTTCTC 58.744 41.667 0.00 0.00 37.53 2.87
306 307 4.934797 TGGGATCAAATTCCACTTCTCT 57.065 40.909 0.00 0.00 37.53 3.10
307 308 4.848357 TGGGATCAAATTCCACTTCTCTC 58.152 43.478 0.00 0.00 37.53 3.20
308 309 4.289410 TGGGATCAAATTCCACTTCTCTCA 59.711 41.667 0.00 0.00 37.53 3.27
309 310 5.222109 TGGGATCAAATTCCACTTCTCTCAA 60.222 40.000 0.00 0.00 37.53 3.02
310 311 5.890419 GGGATCAAATTCCACTTCTCTCAAT 59.110 40.000 0.00 0.00 37.53 2.57
311 312 6.379417 GGGATCAAATTCCACTTCTCTCAATT 59.621 38.462 0.00 0.00 37.53 2.32
312 313 7.093596 GGGATCAAATTCCACTTCTCTCAATTT 60.094 37.037 0.00 0.00 37.53 1.82
313 314 7.972832 GGATCAAATTCCACTTCTCTCAATTTC 59.027 37.037 0.00 0.00 35.72 2.17
314 315 8.647256 ATCAAATTCCACTTCTCTCAATTTCT 57.353 30.769 0.00 0.00 0.00 2.52
315 316 9.745018 ATCAAATTCCACTTCTCTCAATTTCTA 57.255 29.630 0.00 0.00 0.00 2.10
316 317 9.745018 TCAAATTCCACTTCTCTCAATTTCTAT 57.255 29.630 0.00 0.00 0.00 1.98
343 344 7.727578 AAAATATTTCCTGGTTTTATCCGGT 57.272 32.000 0.00 0.00 32.33 5.28
344 345 7.727578 AAATATTTCCTGGTTTTATCCGGTT 57.272 32.000 0.00 0.00 32.33 4.44
345 346 6.954487 ATATTTCCTGGTTTTATCCGGTTC 57.046 37.500 0.00 0.00 32.33 3.62
346 347 3.791953 TTCCTGGTTTTATCCGGTTCA 57.208 42.857 0.00 0.00 32.33 3.18
347 348 3.791953 TCCTGGTTTTATCCGGTTCAA 57.208 42.857 0.00 0.00 32.33 2.69
348 349 4.310022 TCCTGGTTTTATCCGGTTCAAT 57.690 40.909 0.00 0.00 32.33 2.57
349 350 4.013728 TCCTGGTTTTATCCGGTTCAATG 58.986 43.478 0.00 0.00 32.33 2.82
350 351 3.130340 CCTGGTTTTATCCGGTTCAATGG 59.870 47.826 0.00 0.00 32.33 3.16
351 352 2.494073 TGGTTTTATCCGGTTCAATGGC 59.506 45.455 0.00 0.00 0.00 4.40
352 353 2.159156 GGTTTTATCCGGTTCAATGGCC 60.159 50.000 0.00 0.00 0.00 5.36
353 354 2.758423 GTTTTATCCGGTTCAATGGCCT 59.242 45.455 3.32 0.00 0.00 5.19
354 355 2.051334 TTATCCGGTTCAATGGCCTG 57.949 50.000 3.32 0.00 0.00 4.85
355 356 0.182537 TATCCGGTTCAATGGCCTGG 59.817 55.000 3.32 0.00 0.00 4.45
356 357 1.863155 ATCCGGTTCAATGGCCTGGT 61.863 55.000 3.32 0.00 0.00 4.00
357 358 1.606313 CCGGTTCAATGGCCTGGTT 60.606 57.895 3.32 0.00 0.00 3.67
358 359 1.184970 CCGGTTCAATGGCCTGGTTT 61.185 55.000 3.32 0.00 0.00 3.27
359 360 0.678950 CGGTTCAATGGCCTGGTTTT 59.321 50.000 3.32 0.00 0.00 2.43
360 361 1.069978 CGGTTCAATGGCCTGGTTTTT 59.930 47.619 3.32 0.00 0.00 1.94
377 378 3.611766 TTTTTCACCGGCTTTCCAAAA 57.388 38.095 0.00 0.00 0.00 2.44
378 379 3.611766 TTTTCACCGGCTTTCCAAAAA 57.388 38.095 0.00 0.00 0.00 1.94
412 413 3.834732 CGGTTTTCTCCGGTCTGAT 57.165 52.632 0.00 0.00 45.88 2.90
413 414 2.094762 CGGTTTTCTCCGGTCTGATT 57.905 50.000 0.00 0.00 45.88 2.57
414 415 1.732259 CGGTTTTCTCCGGTCTGATTG 59.268 52.381 0.00 0.00 45.88 2.67
415 416 1.468914 GGTTTTCTCCGGTCTGATTGC 59.531 52.381 0.00 0.00 0.00 3.56
416 417 2.151202 GTTTTCTCCGGTCTGATTGCA 58.849 47.619 0.00 0.00 0.00 4.08
417 418 2.552315 GTTTTCTCCGGTCTGATTGCAA 59.448 45.455 0.00 0.00 0.00 4.08
418 419 2.559698 TTCTCCGGTCTGATTGCAAA 57.440 45.000 1.71 0.00 0.00 3.68
419 420 2.559698 TCTCCGGTCTGATTGCAAAA 57.440 45.000 1.71 0.00 0.00 2.44
420 421 2.151202 TCTCCGGTCTGATTGCAAAAC 58.849 47.619 1.71 1.21 0.00 2.43
421 422 0.871722 TCCGGTCTGATTGCAAAACG 59.128 50.000 1.71 0.27 0.00 3.60
422 423 0.109781 CCGGTCTGATTGCAAAACGG 60.110 55.000 10.70 10.70 0.00 4.44
423 424 0.591170 CGGTCTGATTGCAAAACGGT 59.409 50.000 1.71 0.00 0.00 4.83
424 425 1.001815 CGGTCTGATTGCAAAACGGTT 60.002 47.619 1.71 0.00 0.00 4.44
425 426 2.542824 CGGTCTGATTGCAAAACGGTTT 60.543 45.455 1.71 0.00 0.00 3.27
426 427 3.453424 GGTCTGATTGCAAAACGGTTTT 58.547 40.909 12.86 12.86 0.00 2.43
427 428 4.612943 GGTCTGATTGCAAAACGGTTTTA 58.387 39.130 17.67 4.31 0.00 1.52
428 429 5.227152 GGTCTGATTGCAAAACGGTTTTAT 58.773 37.500 17.67 8.86 0.00 1.40
429 430 5.694458 GGTCTGATTGCAAAACGGTTTTATT 59.306 36.000 17.67 4.30 0.00 1.40
430 431 6.864165 GGTCTGATTGCAAAACGGTTTTATTA 59.136 34.615 17.67 7.12 0.00 0.98
431 432 7.061789 GGTCTGATTGCAAAACGGTTTTATTAG 59.938 37.037 17.67 13.52 0.00 1.73
432 433 6.584563 TCTGATTGCAAAACGGTTTTATTAGC 59.415 34.615 17.67 16.40 0.00 3.09
433 434 6.451393 TGATTGCAAAACGGTTTTATTAGCT 58.549 32.000 17.67 3.75 0.00 3.32
434 435 6.364706 TGATTGCAAAACGGTTTTATTAGCTG 59.635 34.615 17.67 6.68 0.00 4.24
435 436 5.440234 TGCAAAACGGTTTTATTAGCTGA 57.560 34.783 17.67 1.41 0.00 4.26
436 437 5.833082 TGCAAAACGGTTTTATTAGCTGAA 58.167 33.333 17.67 0.00 0.00 3.02
437 438 6.273825 TGCAAAACGGTTTTATTAGCTGAAA 58.726 32.000 17.67 0.48 0.00 2.69
438 439 6.757010 TGCAAAACGGTTTTATTAGCTGAAAA 59.243 30.769 17.67 0.00 0.00 2.29
439 440 7.277981 TGCAAAACGGTTTTATTAGCTGAAAAA 59.722 29.630 17.67 0.00 0.00 1.94
497 498 2.428622 CCGGTCCGGTCTGGTTTT 59.571 61.111 23.02 0.00 42.73 2.43
498 499 1.228033 CCGGTCCGGTCTGGTTTTT 60.228 57.895 23.02 0.00 42.73 1.94
526 527 2.139917 TGGATTGTACACACGCACTTC 58.860 47.619 0.00 0.00 0.00 3.01
530 531 0.249699 TGTACACACGCACTTCAGGG 60.250 55.000 0.00 0.00 0.00 4.45
548 549 1.533469 GGGTCGATCCATCCCCTACG 61.533 65.000 10.69 0.00 38.11 3.51
561 562 1.389555 CCCTACGGAAGCCCAATTTC 58.610 55.000 0.00 0.00 0.00 2.17
572 573 3.830121 AGCCCAATTTCCTCATCATCTC 58.170 45.455 0.00 0.00 0.00 2.75
585 586 5.255710 TCATCATCTCTTCGAGAAAGTCC 57.744 43.478 0.00 0.00 42.27 3.85
595 596 2.231478 TCGAGAAAGTCCCACTCATGTC 59.769 50.000 0.00 0.00 0.00 3.06
705 706 8.931568 TCAATTATAAACCTCCCTAGTAGGAAC 58.068 37.037 18.43 0.00 37.67 3.62
706 707 6.966534 TTATAAACCTCCCTAGTAGGAACG 57.033 41.667 18.43 6.33 37.67 3.95
734 735 6.749139 TCTAATTGTCCGACATTATCTCCAG 58.251 40.000 1.09 0.00 0.00 3.86
737 738 2.101415 TGTCCGACATTATCTCCAGCAG 59.899 50.000 0.00 0.00 0.00 4.24
910 924 2.347490 CACCACCCCCTTGAGTCG 59.653 66.667 0.00 0.00 0.00 4.18
914 928 1.302511 CACCCCCTTGAGTCGTTGG 60.303 63.158 0.00 0.00 0.00 3.77
955 969 1.593793 GGTCGTCGCAAACTTGTTGTC 60.594 52.381 0.00 0.00 0.00 3.18
969 983 2.890766 TTGTCCCCGCAACCTCTCC 61.891 63.158 0.00 0.00 0.00 3.71
977 991 2.692741 CAACCTCTCCCCTCCCCC 60.693 72.222 0.00 0.00 0.00 5.40
978 992 2.882143 AACCTCTCCCCTCCCCCT 60.882 66.667 0.00 0.00 0.00 4.79
981 995 4.179599 CTCTCCCCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1335 1358 3.796443 CGAGTTCTCGTCGCCGGA 61.796 66.667 5.05 0.00 33.95 5.14
1432 1668 4.379243 CGCCGCTTCAGTCCACCT 62.379 66.667 0.00 0.00 0.00 4.00
1510 1746 3.072476 TCCTCGAATCACCCAACTTTCTT 59.928 43.478 0.00 0.00 0.00 2.52
1564 1802 6.205658 CCCCTTAAGCTGCTATGTTATTCTTC 59.794 42.308 0.90 0.00 0.00 2.87
1598 1850 2.032550 TCCGTTCGGTCGTTAGATGATC 59.967 50.000 11.04 0.00 0.00 2.92
1614 1866 3.257469 TGATCCAAGATGCAGTCTGTC 57.743 47.619 0.93 0.00 37.23 3.51
1628 1880 4.318332 CAGTCTGTCTGCCTTGTTTATCA 58.682 43.478 0.00 0.00 37.36 2.15
1670 1922 7.943079 TTCAAGGTGTACATCATGAATTGAT 57.057 32.000 19.95 0.00 46.27 2.57
1755 2007 7.335924 GTGAGGTATTTGCCTTGTTTATCTGTA 59.664 37.037 0.00 0.00 39.34 2.74
1804 2056 1.070601 AGGCTTTGAACATGTTTGGGC 59.929 47.619 13.36 13.87 0.00 5.36
1937 2197 7.325821 CGCTTAATTATTTGCAGTCAAAGTTGA 59.674 33.333 0.00 0.00 44.47 3.18
1946 2206 6.245115 TGCAGTCAAAGTTGATGTAGATTG 57.755 37.500 0.00 0.00 39.73 2.67
1956 2216 5.958380 AGTTGATGTAGATTGTACTCCCTCA 59.042 40.000 0.00 0.00 0.00 3.86
1957 2217 6.097554 AGTTGATGTAGATTGTACTCCCTCAG 59.902 42.308 0.00 0.00 0.00 3.35
1975 2235 4.051922 CTCAGTCCCATATTAGTTGTCGC 58.948 47.826 0.00 0.00 0.00 5.19
1976 2236 3.704566 TCAGTCCCATATTAGTTGTCGCT 59.295 43.478 0.00 0.00 0.00 4.93
2026 2286 5.023533 TGTCTAGGTACATCCATTTCAGC 57.976 43.478 0.00 0.00 39.02 4.26
2028 2288 3.704566 TCTAGGTACATCCATTTCAGCGT 59.295 43.478 0.00 0.00 39.02 5.07
2039 2299 6.603237 TCCATTTCAGCGTCAACTAATATG 57.397 37.500 0.00 0.00 0.00 1.78
2055 2315 4.456662 AATATGAGACGGAGGGAGTAGT 57.543 45.455 0.00 0.00 0.00 2.73
2178 2438 6.015772 GTGGTCCCTTTCTTGCTAATGTTAAA 60.016 38.462 0.00 0.00 0.00 1.52
2382 2642 8.498054 TCTTCACATCAGTTATGATTCCTTTC 57.502 34.615 0.00 0.00 43.92 2.62
2407 2667 0.106268 TGAGTTGGGTGCCATGTGTT 60.106 50.000 0.00 0.00 31.53 3.32
2463 2723 7.195839 TGGTTTGCTTTTATTTAATGTTGCC 57.804 32.000 0.00 0.00 0.00 4.52
2508 2771 3.268334 TGCCTTGATTCCTTAAGCCCTTA 59.732 43.478 0.00 0.00 0.00 2.69
2534 2797 6.373774 AGTTATGGTTTGATCTGCTTCTCTTG 59.626 38.462 0.00 0.00 0.00 3.02
2595 2858 7.225341 GCTTCAGATTTGAACATTTGGTCTTTT 59.775 33.333 0.00 0.00 38.37 2.27
2627 2890 7.712264 TGAAATTTTCACCATGCTAAAGTTG 57.288 32.000 7.74 0.00 34.08 3.16
2706 2989 2.159327 GCATTTGCTCTGGCTTTTGT 57.841 45.000 0.00 0.00 39.59 2.83
2707 2990 2.486918 GCATTTGCTCTGGCTTTTGTT 58.513 42.857 0.00 0.00 39.59 2.83
2708 2991 2.477754 GCATTTGCTCTGGCTTTTGTTC 59.522 45.455 0.00 0.00 39.59 3.18
2709 2992 3.801293 GCATTTGCTCTGGCTTTTGTTCT 60.801 43.478 0.00 0.00 39.59 3.01
2710 2993 4.374399 CATTTGCTCTGGCTTTTGTTCTT 58.626 39.130 0.00 0.00 39.59 2.52
2711 2994 5.531634 CATTTGCTCTGGCTTTTGTTCTTA 58.468 37.500 0.00 0.00 39.59 2.10
2712 2995 5.789643 TTTGCTCTGGCTTTTGTTCTTAT 57.210 34.783 0.00 0.00 39.59 1.73
2713 2996 5.789643 TTGCTCTGGCTTTTGTTCTTATT 57.210 34.783 0.00 0.00 39.59 1.40
2714 2997 5.376854 TGCTCTGGCTTTTGTTCTTATTC 57.623 39.130 0.00 0.00 39.59 1.75
2715 2998 4.826733 TGCTCTGGCTTTTGTTCTTATTCA 59.173 37.500 0.00 0.00 39.59 2.57
2716 2999 5.477984 TGCTCTGGCTTTTGTTCTTATTCAT 59.522 36.000 0.00 0.00 39.59 2.57
2717 3000 5.803967 GCTCTGGCTTTTGTTCTTATTCATG 59.196 40.000 0.00 0.00 35.22 3.07
2718 3001 6.271488 TCTGGCTTTTGTTCTTATTCATGG 57.729 37.500 0.00 0.00 0.00 3.66
2719 3002 4.819769 TGGCTTTTGTTCTTATTCATGGC 58.180 39.130 0.00 0.00 0.00 4.40
2720 3003 4.282957 TGGCTTTTGTTCTTATTCATGGCA 59.717 37.500 0.00 0.00 0.00 4.92
2721 3004 5.221601 TGGCTTTTGTTCTTATTCATGGCAA 60.222 36.000 0.00 0.00 0.00 4.52
2722 3005 5.876460 GGCTTTTGTTCTTATTCATGGCAAT 59.124 36.000 0.00 0.00 0.00 3.56
2855 3138 1.462670 CTCTGCCTTCTCTTTTGACGC 59.537 52.381 0.00 0.00 0.00 5.19
2939 3222 2.665649 AGGAACATAATGCACGACGA 57.334 45.000 0.00 0.00 0.00 4.20
2941 3224 2.671396 AGGAACATAATGCACGACGAAC 59.329 45.455 0.00 0.00 0.00 3.95
3027 3311 7.432148 TCTTTACTGGCTTGGATATTCAGTA 57.568 36.000 0.00 0.00 39.16 2.74
3182 3469 4.765273 CTTGTTGGTTTAGCCTTTTTGGT 58.235 39.130 0.00 0.00 38.35 3.67
3256 3543 5.630121 TGACAAGGTTGGAGTTGTGATAAT 58.370 37.500 0.00 0.00 37.02 1.28
3257 3544 5.705441 TGACAAGGTTGGAGTTGTGATAATC 59.295 40.000 0.00 0.00 37.02 1.75
3263 3550 3.680490 TGGAGTTGTGATAATCGGCAAA 58.320 40.909 0.00 0.00 0.00 3.68
3349 3640 9.450807 CTACAAGTCTTGTTGAAATTAACTTGG 57.549 33.333 22.81 0.00 43.86 3.61
3361 3652 6.151985 TGAAATTAACTTGGCACGTGGATATT 59.848 34.615 18.88 1.24 0.00 1.28
3436 3728 4.338879 CTGACCAACTCCTCCATTTTGAT 58.661 43.478 0.00 0.00 0.00 2.57
3528 3820 4.025229 CGTTCGTCTGACCATCTTTTCAAA 60.025 41.667 1.55 0.00 0.00 2.69
3557 3849 6.748132 TGATGGAGATTTGGTTGAGAAAAAC 58.252 36.000 0.00 0.00 0.00 2.43
3558 3850 6.323482 TGATGGAGATTTGGTTGAGAAAAACA 59.677 34.615 0.00 0.00 0.00 2.83
3569 3861 2.618241 TGAGAAAAACACGCTGCAGATT 59.382 40.909 20.43 0.00 0.00 2.40
3626 3918 7.333779 TGATATCATCAATTGGTACAGGGAT 57.666 36.000 5.42 0.00 36.33 3.85
3651 3943 4.105217 TCAGCATTAGGGATCATCCATTGT 59.895 41.667 5.89 0.00 38.64 2.71
3680 3972 1.699083 TGAGGAGTCACATCTTGCCAA 59.301 47.619 0.00 0.00 0.00 4.52
3700 3992 4.708421 CCAAGATCAATTGTTGGACCTGAT 59.292 41.667 17.36 0.00 43.01 2.90
3733 4027 8.585471 TCCATTTGAGCTTTTGAGATAAGAAT 57.415 30.769 0.00 0.00 0.00 2.40
3768 4062 0.456628 GAGGTAGTGTCGAGGAAGCC 59.543 60.000 0.00 0.00 0.00 4.35
3824 4118 5.412594 TGGAGTTAACATGAATCTGAGTTGC 59.587 40.000 8.61 0.00 0.00 4.17
3852 4146 3.719268 TGCATCAATACAACCTGACCT 57.281 42.857 0.00 0.00 0.00 3.85
3875 4169 8.047310 ACCTACTCCATTTTGAGTATTTGGTAG 58.953 37.037 8.17 0.00 44.55 3.18
3977 4271 3.139077 ACAAGTTGTTGGAGATTCGGTC 58.861 45.455 1.64 0.00 38.07 4.79
3989 4283 2.151202 GATTCGGTCAAGGAAAGTGCA 58.849 47.619 0.00 0.00 0.00 4.57
4008 4302 1.069204 CACTGCGGATACCAGCATAGT 59.931 52.381 0.00 0.00 42.95 2.12
4122 4416 8.660373 GTCTACTTTTTGATATGGACAACTGAG 58.340 37.037 0.00 0.00 0.00 3.35
4232 4526 2.352127 GCCTTTGCAGGAAGACAACATC 60.352 50.000 0.00 0.00 44.19 3.06
4295 4589 4.579869 TGCCTTCTTCATGTAGGAACTTC 58.420 43.478 0.00 0.00 41.75 3.01
4388 4686 1.616865 GAAACCCCTGTGTTTTAGGCC 59.383 52.381 0.00 0.00 38.51 5.19
4397 4695 2.289756 TGTGTTTTAGGCCGACTGCATA 60.290 45.455 0.00 0.00 43.89 3.14
4522 4821 1.679898 GGGCTGTTACTGGCTCACT 59.320 57.895 14.53 0.00 0.00 3.41
4581 4880 9.842775 ACAATATCTGAATGTGTAGTCATGAAT 57.157 29.630 0.00 0.00 29.56 2.57
4590 4889 9.190858 GAATGTGTAGTCATGAATCAGATAGTC 57.809 37.037 0.00 0.00 0.00 2.59
4650 4949 7.684529 TCCTTCTCAGAGCTTTCTTAAGAAAT 58.315 34.615 26.62 15.72 42.44 2.17
4703 5002 6.148811 CGGTATGTGGAGAGTAATTTTGTTGT 59.851 38.462 0.00 0.00 0.00 3.32
4974 5273 2.699281 GGGGTGGTAGGGGATATGAAGT 60.699 54.545 0.00 0.00 0.00 3.01
5215 5514 7.603963 TTTTCAGCTTATCGTAATTACTGCA 57.396 32.000 13.56 0.00 0.00 4.41
5216 5515 6.583912 TTCAGCTTATCGTAATTACTGCAC 57.416 37.500 13.56 0.00 0.00 4.57
5217 5516 5.902681 TCAGCTTATCGTAATTACTGCACT 58.097 37.500 13.56 1.37 0.00 4.40
5218 5517 6.338146 TCAGCTTATCGTAATTACTGCACTT 58.662 36.000 13.56 0.00 0.00 3.16
5219 5518 7.485810 TCAGCTTATCGTAATTACTGCACTTA 58.514 34.615 13.56 0.00 0.00 2.24
5220 5519 7.977293 TCAGCTTATCGTAATTACTGCACTTAA 59.023 33.333 13.56 2.63 0.00 1.85
5221 5520 8.765219 CAGCTTATCGTAATTACTGCACTTAAT 58.235 33.333 13.56 0.00 0.00 1.40
5222 5521 8.979574 AGCTTATCGTAATTACTGCACTTAATC 58.020 33.333 13.56 0.18 0.00 1.75
5223 5522 8.979574 GCTTATCGTAATTACTGCACTTAATCT 58.020 33.333 13.56 0.00 0.00 2.40
5226 5525 7.000575 TCGTAATTACTGCACTTAATCTTGC 57.999 36.000 13.56 0.00 39.33 4.01
5227 5526 6.816640 TCGTAATTACTGCACTTAATCTTGCT 59.183 34.615 13.56 0.00 39.62 3.91
5228 5527 7.333423 TCGTAATTACTGCACTTAATCTTGCTT 59.667 33.333 13.56 0.00 39.62 3.91
5229 5528 7.426456 CGTAATTACTGCACTTAATCTTGCTTG 59.574 37.037 13.56 2.50 39.62 4.01
5230 5529 3.565905 ACTGCACTTAATCTTGCTTGC 57.434 42.857 5.69 0.00 39.62 4.01
5231 5530 2.229784 ACTGCACTTAATCTTGCTTGCC 59.770 45.455 5.69 0.00 39.62 4.52
5232 5531 2.490903 CTGCACTTAATCTTGCTTGCCT 59.509 45.455 5.69 0.00 39.62 4.75
5233 5532 2.892852 TGCACTTAATCTTGCTTGCCTT 59.107 40.909 5.69 0.00 39.62 4.35
5234 5533 4.078537 TGCACTTAATCTTGCTTGCCTTA 58.921 39.130 5.69 0.00 39.62 2.69
5235 5534 4.522405 TGCACTTAATCTTGCTTGCCTTAA 59.478 37.500 5.69 0.00 39.62 1.85
5236 5535 4.859245 GCACTTAATCTTGCTTGCCTTAAC 59.141 41.667 0.00 0.00 35.74 2.01
5237 5536 5.335976 GCACTTAATCTTGCTTGCCTTAACT 60.336 40.000 0.00 0.00 35.74 2.24
5238 5537 6.681777 CACTTAATCTTGCTTGCCTTAACTT 58.318 36.000 0.00 0.00 0.00 2.66
5239 5538 7.574967 GCACTTAATCTTGCTTGCCTTAACTTA 60.575 37.037 0.00 0.00 35.74 2.24
5240 5539 8.296713 CACTTAATCTTGCTTGCCTTAACTTAA 58.703 33.333 0.00 0.00 0.00 1.85
5241 5540 9.025041 ACTTAATCTTGCTTGCCTTAACTTAAT 57.975 29.630 0.00 0.00 0.00 1.40
5242 5541 9.294030 CTTAATCTTGCTTGCCTTAACTTAATG 57.706 33.333 0.00 0.00 0.00 1.90
5243 5542 6.840780 ATCTTGCTTGCCTTAACTTAATGT 57.159 33.333 0.00 0.00 0.00 2.71
5244 5543 6.648879 TCTTGCTTGCCTTAACTTAATGTT 57.351 33.333 0.00 0.00 42.31 2.71
5245 5544 7.049799 TCTTGCTTGCCTTAACTTAATGTTT 57.950 32.000 0.00 0.00 39.89 2.83
5246 5545 7.496747 TCTTGCTTGCCTTAACTTAATGTTTT 58.503 30.769 0.00 0.00 39.89 2.43
5247 5546 7.984617 TCTTGCTTGCCTTAACTTAATGTTTTT 59.015 29.630 0.00 0.00 39.89 1.94
5248 5547 7.707774 TGCTTGCCTTAACTTAATGTTTTTC 57.292 32.000 0.00 0.00 39.89 2.29
5249 5548 7.268586 TGCTTGCCTTAACTTAATGTTTTTCA 58.731 30.769 0.00 0.00 39.89 2.69
5250 5549 7.437862 TGCTTGCCTTAACTTAATGTTTTTCAG 59.562 33.333 0.00 0.00 39.89 3.02
5251 5550 7.569408 GCTTGCCTTAACTTAATGTTTTTCAGC 60.569 37.037 0.00 0.00 39.89 4.26
5252 5551 7.049799 TGCCTTAACTTAATGTTTTTCAGCT 57.950 32.000 0.00 0.00 39.89 4.24
5253 5552 7.496747 TGCCTTAACTTAATGTTTTTCAGCTT 58.503 30.769 0.00 0.00 39.89 3.74
5254 5553 8.634444 TGCCTTAACTTAATGTTTTTCAGCTTA 58.366 29.630 0.00 0.00 39.89 3.09
5255 5554 9.639601 GCCTTAACTTAATGTTTTTCAGCTTAT 57.360 29.630 0.00 0.00 39.89 1.73
5266 5565 9.988350 ATGTTTTTCAGCTTATCGTAATTACTG 57.012 29.630 13.56 7.44 0.00 2.74
5267 5566 7.960738 TGTTTTTCAGCTTATCGTAATTACTGC 59.039 33.333 13.56 9.35 0.00 4.40
5318 5617 7.188468 TGTTTTCATTGCCTTTTATTTCAGC 57.812 32.000 0.00 0.00 0.00 4.26
5348 5647 2.096019 CCTCAACTTTGCTCGAAGAAGC 60.096 50.000 4.00 0.00 34.09 3.86
5555 5854 1.255882 CAGCTAGATCGCCTCCAGAT 58.744 55.000 0.00 0.00 0.00 2.90
5588 5887 0.976641 TTCCAGATCCGTTGCAGAGT 59.023 50.000 0.00 0.00 0.00 3.24
5837 6136 1.542547 GGTGGTTCATATGTAGGCCGG 60.543 57.143 0.00 0.00 0.00 6.13
5963 6262 3.906218 CTCTTCATGGTAGGGATGATGGA 59.094 47.826 0.00 0.00 29.96 3.41
6029 6328 1.045407 AGTTAAGACGGTGCAGGTCA 58.955 50.000 17.42 0.00 36.87 4.02
6115 6414 9.599866 CTGAAATGAACAAGTCCACTATACATA 57.400 33.333 0.00 0.00 0.00 2.29
6183 6482 6.558009 TGTCAAAGCTGATCTGATTATTTGC 58.442 36.000 3.38 5.87 33.05 3.68
6244 6547 0.320697 GGTCGGGTGGAGTATATGCC 59.679 60.000 0.00 0.00 0.00 4.40
6249 6552 2.224523 CGGGTGGAGTATATGCCAACAT 60.225 50.000 12.31 0.00 43.75 2.71
6268 6571 3.941483 ACATAAGGATTTCAGGTTGCTCG 59.059 43.478 0.00 0.00 0.00 5.03
6270 6573 0.678048 AGGATTTCAGGTTGCTCGGC 60.678 55.000 0.00 0.00 0.00 5.54
6271 6574 0.960364 GGATTTCAGGTTGCTCGGCA 60.960 55.000 0.00 0.00 36.47 5.69
6272 6575 0.449388 GATTTCAGGTTGCTCGGCAG 59.551 55.000 0.00 0.00 40.61 4.85
6281 6584 3.426568 GCTCGGCAGCTGTTGGTC 61.427 66.667 16.64 0.00 43.09 4.02
6282 6585 2.031012 CTCGGCAGCTGTTGGTCA 59.969 61.111 16.64 0.00 0.00 4.02
6283 6586 2.280797 TCGGCAGCTGTTGGTCAC 60.281 61.111 16.64 0.00 0.00 3.67
6284 6587 2.591429 CGGCAGCTGTTGGTCACA 60.591 61.111 16.64 0.00 0.00 3.58
6285 6588 1.968017 CGGCAGCTGTTGGTCACAT 60.968 57.895 16.64 0.00 33.76 3.21
6286 6589 1.582968 GGCAGCTGTTGGTCACATG 59.417 57.895 16.64 0.00 33.76 3.21
6287 6590 1.080974 GCAGCTGTTGGTCACATGC 60.081 57.895 16.64 0.00 33.76 4.06
6288 6591 1.798234 GCAGCTGTTGGTCACATGCA 61.798 55.000 16.64 0.00 33.76 3.96
6293 6596 0.317799 TGTTGGTCACATGCATTGGC 59.682 50.000 0.00 0.34 41.68 4.52
6383 6696 2.198827 TGGAACCCACTACATTGCAG 57.801 50.000 0.00 0.00 0.00 4.41
6390 6703 1.409241 CCACTACATTGCAGGATGGCT 60.409 52.381 3.53 0.00 35.86 4.75
6446 6784 3.793465 GCTGGAAGAAACACAAGTTCTGC 60.793 47.826 0.00 0.00 36.84 4.26
6447 6785 3.620488 TGGAAGAAACACAAGTTCTGCT 58.380 40.909 0.00 0.00 36.84 4.24
6448 6786 3.627577 TGGAAGAAACACAAGTTCTGCTC 59.372 43.478 0.00 0.00 36.84 4.26
6474 6826 5.201243 GTTTCACCAAGGCCTATTTAGGAT 58.799 41.667 5.16 0.00 46.63 3.24
6578 6939 8.698210 AGGTGTATCAATTCATTTTGCACATAT 58.302 29.630 0.00 0.00 0.00 1.78
6579 6940 9.964303 GGTGTATCAATTCATTTTGCACATATA 57.036 29.630 0.00 0.00 0.00 0.86
6627 6991 6.849085 TTTGCACATAGGACCAATTGTAAT 57.151 33.333 4.43 0.00 0.00 1.89
6629 6993 5.754782 TGCACATAGGACCAATTGTAATCT 58.245 37.500 4.43 0.00 0.00 2.40
6670 7102 6.403866 TCATTTGTCTTGCATGGTAGTTTT 57.596 33.333 0.00 0.00 0.00 2.43
6717 7149 0.538516 TGTGCCTTTTACCACCGCAT 60.539 50.000 0.00 0.00 0.00 4.73
6741 7177 7.496346 TCCATTAGTCAAATCAAGACCTAGT 57.504 36.000 0.00 0.00 36.68 2.57
6757 7193 2.159226 CCTAGTGCCTCTAACCGTTGAG 60.159 54.545 0.00 0.00 0.00 3.02
6834 7273 5.586243 TGTGTTCTCGGGTACTATACACTAC 59.414 44.000 0.00 0.00 36.34 2.73
6850 7289 1.361543 ACTACCTCTCCCTGCTTGGTA 59.638 52.381 0.00 0.00 32.74 3.25
6869 7310 0.771755 ACAAGACTTGGGAAGGGTCC 59.228 55.000 19.16 0.00 44.10 4.46
6872 7313 1.954035 AGACTTGGGAAGGGTCCTAC 58.046 55.000 0.00 0.00 44.28 3.18
6928 7369 1.228552 AAGAATGGGTGGCTGCGTT 60.229 52.632 0.00 0.00 0.00 4.84
6938 7379 2.325082 GGCTGCGTTGACAACCGAT 61.325 57.895 12.66 0.00 0.00 4.18
6959 7403 6.262273 CCGATGAGCCTTATTAAAGCCTTTTA 59.738 38.462 0.00 0.00 0.00 1.52
6989 7433 2.987355 TTCGGCCTTTGGGGTCAACC 62.987 60.000 0.00 0.00 40.36 3.77
7008 7452 7.398024 GTCAACCCATAAGCTTATATGAGGAT 58.602 38.462 18.45 9.19 35.69 3.24
7013 7457 5.587844 CCATAAGCTTATATGAGGATGGTGC 59.412 44.000 18.45 0.00 35.69 5.01
7014 7458 4.712051 AAGCTTATATGAGGATGGTGCA 57.288 40.909 0.00 0.00 0.00 4.57
7015 7459 4.013267 AGCTTATATGAGGATGGTGCAC 57.987 45.455 8.80 8.80 0.00 4.57
7020 7465 2.592102 ATGAGGATGGTGCACAAAGT 57.408 45.000 20.43 0.20 0.00 2.66
7041 7486 1.177401 GGCTTGAGGGCTTGTTAAGG 58.823 55.000 0.00 0.00 37.53 2.69
7043 7488 2.514803 GCTTGAGGGCTTGTTAAGGAA 58.485 47.619 0.00 0.00 0.00 3.36
7045 7490 2.879103 TGAGGGCTTGTTAAGGAAGG 57.121 50.000 0.00 0.00 0.00 3.46
7046 7491 1.271926 TGAGGGCTTGTTAAGGAAGGC 60.272 52.381 10.73 10.73 43.49 4.35
7048 7493 1.313091 GGGCTTGTTAAGGAAGGCGG 61.313 60.000 12.19 0.00 44.78 6.13
7049 7494 1.506718 GCTTGTTAAGGAAGGCGGC 59.493 57.895 0.00 0.00 0.00 6.53
7050 7495 0.960861 GCTTGTTAAGGAAGGCGGCT 60.961 55.000 5.25 5.25 0.00 5.52
7051 7496 1.677820 GCTTGTTAAGGAAGGCGGCTA 60.678 52.381 13.71 0.00 0.00 3.93
7052 7497 2.007608 CTTGTTAAGGAAGGCGGCTAC 58.992 52.381 13.71 8.89 0.00 3.58
7054 7499 0.808847 GTTAAGGAAGGCGGCTACGG 60.809 60.000 13.71 0.00 41.36 4.02
7085 7530 4.223556 GGGGGAAACAAAAAGGAAAACA 57.776 40.909 0.00 0.00 0.00 2.83
7086 7531 3.942748 GGGGGAAACAAAAAGGAAAACAC 59.057 43.478 0.00 0.00 0.00 3.32
7087 7532 4.323945 GGGGGAAACAAAAAGGAAAACACT 60.324 41.667 0.00 0.00 0.00 3.55
7088 7533 5.250200 GGGGAAACAAAAAGGAAAACACTT 58.750 37.500 0.00 0.00 0.00 3.16
7089 7534 5.123186 GGGGAAACAAAAAGGAAAACACTTG 59.877 40.000 0.00 0.00 0.00 3.16
7090 7535 5.703592 GGGAAACAAAAAGGAAAACACTTGT 59.296 36.000 0.00 0.00 0.00 3.16
7091 7536 6.874664 GGGAAACAAAAAGGAAAACACTTGTA 59.125 34.615 0.00 0.00 0.00 2.41
7092 7537 7.064134 GGGAAACAAAAAGGAAAACACTTGTAG 59.936 37.037 0.00 0.00 0.00 2.74
7093 7538 7.815549 GGAAACAAAAAGGAAAACACTTGTAGA 59.184 33.333 0.00 0.00 0.00 2.59
7094 7539 8.528917 AAACAAAAAGGAAAACACTTGTAGAC 57.471 30.769 0.00 0.00 0.00 2.59
7095 7540 6.319399 ACAAAAAGGAAAACACTTGTAGACG 58.681 36.000 0.00 0.00 0.00 4.18
7096 7541 5.494632 AAAAGGAAAACACTTGTAGACGG 57.505 39.130 0.00 0.00 0.00 4.79
7097 7542 2.490991 AGGAAAACACTTGTAGACGGC 58.509 47.619 0.00 0.00 0.00 5.68
7098 7543 1.193874 GGAAAACACTTGTAGACGGCG 59.806 52.381 4.80 4.80 0.00 6.46
7099 7544 1.862827 GAAAACACTTGTAGACGGCGT 59.137 47.619 14.65 14.65 0.00 5.68
7100 7545 1.214367 AAACACTTGTAGACGGCGTG 58.786 50.000 21.19 3.78 0.00 5.34
7101 7546 1.219522 AACACTTGTAGACGGCGTGC 61.220 55.000 21.19 9.52 0.00 5.34
7102 7547 2.048503 ACTTGTAGACGGCGTGCC 60.049 61.111 21.19 3.26 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.699410 ACCAGATTAAGGTGAATGATAAATTCA 57.301 29.630 0.00 0.00 38.13 2.57
8 9 9.559732 CACATACCAGATTAAGGTGAATGATAA 57.440 33.333 0.00 0.00 40.26 1.75
9 10 8.713971 ACACATACCAGATTAAGGTGAATGATA 58.286 33.333 0.00 0.00 40.26 2.15
10 11 7.500227 CACACATACCAGATTAAGGTGAATGAT 59.500 37.037 0.00 0.00 40.26 2.45
11 12 6.823182 CACACATACCAGATTAAGGTGAATGA 59.177 38.462 0.00 0.00 40.26 2.57
12 13 6.823182 TCACACATACCAGATTAAGGTGAATG 59.177 38.462 0.00 0.00 40.26 2.67
13 14 6.957631 TCACACATACCAGATTAAGGTGAAT 58.042 36.000 0.00 0.00 40.26 2.57
14 15 6.367374 TCACACATACCAGATTAAGGTGAA 57.633 37.500 0.00 0.00 40.26 3.18
15 16 6.560003 ATCACACATACCAGATTAAGGTGA 57.440 37.500 0.00 0.00 40.26 4.02
16 17 6.599244 ACAATCACACATACCAGATTAAGGTG 59.401 38.462 0.00 0.00 40.26 4.00
17 18 6.721318 ACAATCACACATACCAGATTAAGGT 58.279 36.000 0.00 0.00 43.14 3.50
18 19 7.226720 GGTACAATCACACATACCAGATTAAGG 59.773 40.741 0.00 0.00 37.59 2.69
19 20 7.768582 TGGTACAATCACACATACCAGATTAAG 59.231 37.037 0.00 0.00 41.67 1.85
20 21 7.625469 TGGTACAATCACACATACCAGATTAA 58.375 34.615 0.00 0.00 41.67 1.40
21 22 7.189079 TGGTACAATCACACATACCAGATTA 57.811 36.000 0.00 0.00 41.67 1.75
22 23 6.061022 TGGTACAATCACACATACCAGATT 57.939 37.500 0.00 0.00 41.67 2.40
23 24 5.692115 TGGTACAATCACACATACCAGAT 57.308 39.130 0.00 0.00 41.67 2.90
64 65 1.263217 CCTGAACCGACAACCTTTTCG 59.737 52.381 0.00 0.00 34.93 3.46
65 66 2.294979 ACCTGAACCGACAACCTTTTC 58.705 47.619 0.00 0.00 0.00 2.29
66 67 2.430248 ACCTGAACCGACAACCTTTT 57.570 45.000 0.00 0.00 0.00 2.27
67 68 2.430248 AACCTGAACCGACAACCTTT 57.570 45.000 0.00 0.00 0.00 3.11
68 69 2.430248 AAACCTGAACCGACAACCTT 57.570 45.000 0.00 0.00 0.00 3.50
69 70 2.430248 AAAACCTGAACCGACAACCT 57.570 45.000 0.00 0.00 0.00 3.50
70 71 3.243168 GGTAAAAACCTGAACCGACAACC 60.243 47.826 0.00 0.00 0.00 3.77
71 72 3.956233 GGTAAAAACCTGAACCGACAAC 58.044 45.455 0.00 0.00 0.00 3.32
77 78 1.532437 CGACCGGTAAAAACCTGAACC 59.468 52.381 7.34 0.00 0.00 3.62
78 79 1.532437 CCGACCGGTAAAAACCTGAAC 59.468 52.381 7.34 0.00 0.00 3.18
79 80 1.415659 TCCGACCGGTAAAAACCTGAA 59.584 47.619 7.34 0.00 36.47 3.02
80 81 1.047002 TCCGACCGGTAAAAACCTGA 58.953 50.000 7.34 0.00 36.47 3.86
81 82 1.150827 GTCCGACCGGTAAAAACCTG 58.849 55.000 7.34 0.00 36.47 4.00
82 83 0.035317 GGTCCGACCGGTAAAAACCT 59.965 55.000 7.34 0.00 36.47 3.50
83 84 2.543578 GGTCCGACCGGTAAAAACC 58.456 57.895 7.34 9.75 36.47 3.27
105 106 0.794473 GACAATCGAACCGGTGAACC 59.206 55.000 8.52 0.00 0.00 3.62
106 107 0.437295 CGACAATCGAACCGGTGAAC 59.563 55.000 8.52 1.71 43.74 3.18
107 108 0.668096 CCGACAATCGAACCGGTGAA 60.668 55.000 8.52 0.00 43.74 3.18
108 109 1.080366 CCGACAATCGAACCGGTGA 60.080 57.895 8.52 1.26 43.74 4.02
109 110 3.470267 CCGACAATCGAACCGGTG 58.530 61.111 8.52 0.00 43.74 4.94
111 112 0.389426 AAGACCGACAATCGAACCGG 60.389 55.000 0.00 0.00 43.74 5.28
112 113 1.425412 AAAGACCGACAATCGAACCG 58.575 50.000 0.00 0.00 43.74 4.44
113 114 4.668431 GCTTAAAAGACCGACAATCGAACC 60.668 45.833 0.00 0.00 43.74 3.62
114 115 4.084223 TGCTTAAAAGACCGACAATCGAAC 60.084 41.667 0.00 0.00 43.74 3.95
115 116 4.059511 TGCTTAAAAGACCGACAATCGAA 58.940 39.130 0.00 0.00 43.74 3.71
116 117 3.655486 TGCTTAAAAGACCGACAATCGA 58.345 40.909 0.00 0.00 43.74 3.59
117 118 4.398549 TTGCTTAAAAGACCGACAATCG 57.601 40.909 0.00 0.00 40.07 3.34
118 119 8.736751 TTTTATTGCTTAAAAGACCGACAATC 57.263 30.769 0.00 0.00 35.37 2.67
160 161 9.830975 TGTTTCACACTACATTAGCACATATAT 57.169 29.630 0.00 0.00 0.00 0.86
161 162 9.660180 TTGTTTCACACTACATTAGCACATATA 57.340 29.630 0.00 0.00 0.00 0.86
162 163 8.560355 TTGTTTCACACTACATTAGCACATAT 57.440 30.769 0.00 0.00 0.00 1.78
163 164 7.971183 TTGTTTCACACTACATTAGCACATA 57.029 32.000 0.00 0.00 0.00 2.29
164 165 6.875948 TTGTTTCACACTACATTAGCACAT 57.124 33.333 0.00 0.00 0.00 3.21
165 166 6.293900 CCATTGTTTCACACTACATTAGCACA 60.294 38.462 0.00 0.00 0.00 4.57
166 167 6.086222 CCATTGTTTCACACTACATTAGCAC 58.914 40.000 0.00 0.00 0.00 4.40
167 168 5.767665 ACCATTGTTTCACACTACATTAGCA 59.232 36.000 0.00 0.00 0.00 3.49
168 169 6.072728 TGACCATTGTTTCACACTACATTAGC 60.073 38.462 0.00 0.00 0.00 3.09
169 170 7.433708 TGACCATTGTTTCACACTACATTAG 57.566 36.000 0.00 0.00 0.00 1.73
170 171 7.809546 TTGACCATTGTTTCACACTACATTA 57.190 32.000 0.00 0.00 0.00 1.90
171 172 6.707440 TTGACCATTGTTTCACACTACATT 57.293 33.333 0.00 0.00 0.00 2.71
172 173 6.707440 TTTGACCATTGTTTCACACTACAT 57.293 33.333 0.00 0.00 0.00 2.29
173 174 6.707440 ATTTGACCATTGTTTCACACTACA 57.293 33.333 0.00 0.00 0.00 2.74
174 175 9.522804 TTTTATTTGACCATTGTTTCACACTAC 57.477 29.630 0.00 0.00 0.00 2.73
176 177 9.612066 AATTTTATTTGACCATTGTTTCACACT 57.388 25.926 0.00 0.00 0.00 3.55
204 205 8.202137 GCTACTTTCTGGTCCACTACATATAAA 58.798 37.037 0.00 0.00 0.00 1.40
205 206 7.343574 TGCTACTTTCTGGTCCACTACATATAA 59.656 37.037 0.00 0.00 0.00 0.98
206 207 6.837048 TGCTACTTTCTGGTCCACTACATATA 59.163 38.462 0.00 0.00 0.00 0.86
207 208 5.661312 TGCTACTTTCTGGTCCACTACATAT 59.339 40.000 0.00 0.00 0.00 1.78
208 209 5.020795 TGCTACTTTCTGGTCCACTACATA 58.979 41.667 0.00 0.00 0.00 2.29
209 210 3.838317 TGCTACTTTCTGGTCCACTACAT 59.162 43.478 0.00 0.00 0.00 2.29
210 211 3.236047 TGCTACTTTCTGGTCCACTACA 58.764 45.455 0.00 0.00 0.00 2.74
211 212 3.955650 TGCTACTTTCTGGTCCACTAC 57.044 47.619 0.00 0.00 0.00 2.73
212 213 5.105064 GGTTATGCTACTTTCTGGTCCACTA 60.105 44.000 0.00 0.00 0.00 2.74
213 214 4.323562 GGTTATGCTACTTTCTGGTCCACT 60.324 45.833 0.00 0.00 0.00 4.00
214 215 3.939592 GGTTATGCTACTTTCTGGTCCAC 59.060 47.826 0.00 0.00 0.00 4.02
215 216 3.369052 CGGTTATGCTACTTTCTGGTCCA 60.369 47.826 0.00 0.00 0.00 4.02
216 217 3.118884 TCGGTTATGCTACTTTCTGGTCC 60.119 47.826 0.00 0.00 0.00 4.46
217 218 4.113354 CTCGGTTATGCTACTTTCTGGTC 58.887 47.826 0.00 0.00 0.00 4.02
218 219 3.514309 ACTCGGTTATGCTACTTTCTGGT 59.486 43.478 0.00 0.00 0.00 4.00
219 220 4.124851 ACTCGGTTATGCTACTTTCTGG 57.875 45.455 0.00 0.00 0.00 3.86
220 221 4.330074 CCAACTCGGTTATGCTACTTTCTG 59.670 45.833 0.00 0.00 0.00 3.02
221 222 4.504858 CCAACTCGGTTATGCTACTTTCT 58.495 43.478 0.00 0.00 0.00 2.52
222 223 4.859629 CCAACTCGGTTATGCTACTTTC 57.140 45.455 0.00 0.00 0.00 2.62
235 236 1.817941 CGGCCCATAACCAACTCGG 60.818 63.158 0.00 0.00 42.50 4.63
236 237 1.078708 ACGGCCCATAACCAACTCG 60.079 57.895 0.00 0.00 0.00 4.18
237 238 1.029947 CCACGGCCCATAACCAACTC 61.030 60.000 0.00 0.00 0.00 3.01
238 239 1.001393 CCACGGCCCATAACCAACT 60.001 57.895 0.00 0.00 0.00 3.16
239 240 2.049767 CCCACGGCCCATAACCAAC 61.050 63.158 0.00 0.00 0.00 3.77
240 241 2.357056 CCCACGGCCCATAACCAA 59.643 61.111 0.00 0.00 0.00 3.67
241 242 4.434354 GCCCACGGCCCATAACCA 62.434 66.667 0.00 0.00 44.06 3.67
267 268 4.264253 TCCCAAGATGTTTGAGCAGTATG 58.736 43.478 0.00 0.00 40.87 2.39
268 269 4.574674 TCCCAAGATGTTTGAGCAGTAT 57.425 40.909 0.00 0.00 0.00 2.12
269 270 4.019411 TGATCCCAAGATGTTTGAGCAGTA 60.019 41.667 0.00 0.00 30.90 2.74
270 271 2.957402 TCCCAAGATGTTTGAGCAGT 57.043 45.000 0.00 0.00 0.00 4.40
271 272 3.349927 TGATCCCAAGATGTTTGAGCAG 58.650 45.455 0.00 0.00 30.90 4.24
272 273 3.438216 TGATCCCAAGATGTTTGAGCA 57.562 42.857 0.00 0.00 30.90 4.26
273 274 4.789012 TTTGATCCCAAGATGTTTGAGC 57.211 40.909 0.00 0.00 33.23 4.26
274 275 6.071221 TGGAATTTGATCCCAAGATGTTTGAG 60.071 38.462 0.00 0.00 38.82 3.02
275 276 5.779260 TGGAATTTGATCCCAAGATGTTTGA 59.221 36.000 0.00 0.00 38.82 2.69
276 277 5.870978 GTGGAATTTGATCCCAAGATGTTTG 59.129 40.000 0.00 0.00 38.82 2.93
277 278 5.781818 AGTGGAATTTGATCCCAAGATGTTT 59.218 36.000 0.00 0.00 38.82 2.83
278 279 5.336102 AGTGGAATTTGATCCCAAGATGTT 58.664 37.500 0.00 0.00 38.82 2.71
279 280 4.939255 AGTGGAATTTGATCCCAAGATGT 58.061 39.130 0.00 0.00 38.82 3.06
280 281 5.655532 AGAAGTGGAATTTGATCCCAAGATG 59.344 40.000 0.00 0.00 38.82 2.90
281 282 5.835582 AGAAGTGGAATTTGATCCCAAGAT 58.164 37.500 0.00 0.00 38.82 2.40
282 283 5.014544 AGAGAAGTGGAATTTGATCCCAAGA 59.985 40.000 0.00 0.00 38.82 3.02
283 284 5.259632 AGAGAAGTGGAATTTGATCCCAAG 58.740 41.667 0.00 0.00 38.82 3.61
284 285 5.222109 TGAGAGAAGTGGAATTTGATCCCAA 60.222 40.000 0.00 0.00 38.82 4.12
285 286 4.289410 TGAGAGAAGTGGAATTTGATCCCA 59.711 41.667 0.00 0.00 38.82 4.37
286 287 4.848357 TGAGAGAAGTGGAATTTGATCCC 58.152 43.478 0.00 0.00 38.82 3.85
287 288 7.401955 AATTGAGAGAAGTGGAATTTGATCC 57.598 36.000 0.00 0.00 40.10 3.36
288 289 8.738106 AGAAATTGAGAGAAGTGGAATTTGATC 58.262 33.333 0.00 0.00 0.00 2.92
289 290 8.647256 AGAAATTGAGAGAAGTGGAATTTGAT 57.353 30.769 0.00 0.00 0.00 2.57
290 291 9.745018 ATAGAAATTGAGAGAAGTGGAATTTGA 57.255 29.630 0.00 0.00 0.00 2.69
317 318 9.257428 ACCGGATAAAACCAGGAAATATTTTTA 57.743 29.630 9.46 0.00 0.00 1.52
318 319 8.141298 ACCGGATAAAACCAGGAAATATTTTT 57.859 30.769 9.46 0.00 0.00 1.94
319 320 7.727578 ACCGGATAAAACCAGGAAATATTTT 57.272 32.000 9.46 0.00 0.00 1.82
320 321 7.397761 TGAACCGGATAAAACCAGGAAATATTT 59.602 33.333 9.46 0.00 0.00 1.40
321 322 6.893005 TGAACCGGATAAAACCAGGAAATATT 59.107 34.615 9.46 0.00 0.00 1.28
322 323 6.428295 TGAACCGGATAAAACCAGGAAATAT 58.572 36.000 9.46 0.00 0.00 1.28
323 324 5.817784 TGAACCGGATAAAACCAGGAAATA 58.182 37.500 9.46 0.00 0.00 1.40
324 325 4.668636 TGAACCGGATAAAACCAGGAAAT 58.331 39.130 9.46 0.00 0.00 2.17
325 326 4.101645 TGAACCGGATAAAACCAGGAAA 57.898 40.909 9.46 0.00 0.00 3.13
326 327 3.791953 TGAACCGGATAAAACCAGGAA 57.208 42.857 9.46 0.00 0.00 3.36
327 328 3.791953 TTGAACCGGATAAAACCAGGA 57.208 42.857 9.46 0.00 0.00 3.86
328 329 3.130340 CCATTGAACCGGATAAAACCAGG 59.870 47.826 9.46 0.00 0.00 4.45
329 330 3.428862 GCCATTGAACCGGATAAAACCAG 60.429 47.826 9.46 0.00 0.00 4.00
330 331 2.494073 GCCATTGAACCGGATAAAACCA 59.506 45.455 9.46 0.00 0.00 3.67
331 332 2.159156 GGCCATTGAACCGGATAAAACC 60.159 50.000 9.46 0.00 0.00 3.27
332 333 2.758423 AGGCCATTGAACCGGATAAAAC 59.242 45.455 9.46 0.00 0.00 2.43
333 334 2.757868 CAGGCCATTGAACCGGATAAAA 59.242 45.455 9.46 0.00 0.00 1.52
334 335 2.374184 CAGGCCATTGAACCGGATAAA 58.626 47.619 9.46 0.00 0.00 1.40
335 336 1.409521 CCAGGCCATTGAACCGGATAA 60.410 52.381 9.46 0.00 0.00 1.75
336 337 0.182537 CCAGGCCATTGAACCGGATA 59.817 55.000 9.46 0.00 0.00 2.59
337 338 1.076777 CCAGGCCATTGAACCGGAT 60.077 57.895 9.46 0.00 0.00 4.18
338 339 2.075355 AACCAGGCCATTGAACCGGA 62.075 55.000 9.46 0.00 0.00 5.14
339 340 1.184970 AAACCAGGCCATTGAACCGG 61.185 55.000 5.01 0.00 0.00 5.28
340 341 0.678950 AAAACCAGGCCATTGAACCG 59.321 50.000 5.01 0.00 0.00 4.44
341 342 2.928801 AAAAACCAGGCCATTGAACC 57.071 45.000 5.01 0.00 0.00 3.62
357 358 3.611766 TTTTGGAAAGCCGGTGAAAAA 57.388 38.095 1.90 0.00 36.79 1.94
358 359 3.611766 TTTTTGGAAAGCCGGTGAAAA 57.388 38.095 1.90 0.00 36.79 2.29
395 396 1.468914 GCAATCAGACCGGAGAAAACC 59.531 52.381 9.46 0.00 0.00 3.27
396 397 2.151202 TGCAATCAGACCGGAGAAAAC 58.849 47.619 9.46 0.00 0.00 2.43
397 398 2.559698 TGCAATCAGACCGGAGAAAA 57.440 45.000 9.46 0.00 0.00 2.29
398 399 2.559698 TTGCAATCAGACCGGAGAAA 57.440 45.000 9.46 0.00 0.00 2.52
399 400 2.552315 GTTTTGCAATCAGACCGGAGAA 59.448 45.455 9.46 0.00 0.00 2.87
400 401 2.151202 GTTTTGCAATCAGACCGGAGA 58.849 47.619 9.46 2.95 0.00 3.71
401 402 1.135972 CGTTTTGCAATCAGACCGGAG 60.136 52.381 9.46 0.00 0.00 4.63
402 403 0.871722 CGTTTTGCAATCAGACCGGA 59.128 50.000 9.46 0.00 0.00 5.14
403 404 0.109781 CCGTTTTGCAATCAGACCGG 60.110 55.000 0.00 0.00 0.00 5.28
404 405 0.591170 ACCGTTTTGCAATCAGACCG 59.409 50.000 0.00 0.00 0.00 4.79
405 406 2.793278 AACCGTTTTGCAATCAGACC 57.207 45.000 0.00 0.00 0.00 3.85
406 407 6.763303 AATAAAACCGTTTTGCAATCAGAC 57.237 33.333 17.73 0.00 34.19 3.51
407 408 6.584563 GCTAATAAAACCGTTTTGCAATCAGA 59.415 34.615 17.73 0.00 34.19 3.27
408 409 6.586082 AGCTAATAAAACCGTTTTGCAATCAG 59.414 34.615 17.73 2.46 34.19 2.90
409 410 6.364706 CAGCTAATAAAACCGTTTTGCAATCA 59.635 34.615 17.73 0.00 34.19 2.57
410 411 6.584563 TCAGCTAATAAAACCGTTTTGCAATC 59.415 34.615 17.73 5.96 34.19 2.67
411 412 6.451393 TCAGCTAATAAAACCGTTTTGCAAT 58.549 32.000 17.73 2.62 34.19 3.56
412 413 5.833082 TCAGCTAATAAAACCGTTTTGCAA 58.167 33.333 17.73 0.00 34.19 4.08
413 414 5.440234 TCAGCTAATAAAACCGTTTTGCA 57.560 34.783 17.73 1.01 34.19 4.08
414 415 6.757026 TTTCAGCTAATAAAACCGTTTTGC 57.243 33.333 17.73 12.57 34.19 3.68
436 437 2.248835 CGGCGACCTCACGGTTTTT 61.249 57.895 0.00 0.00 45.73 1.94
437 438 2.663852 CGGCGACCTCACGGTTTT 60.664 61.111 0.00 0.00 45.73 2.43
438 439 4.675029 CCGGCGACCTCACGGTTT 62.675 66.667 9.30 0.00 45.73 3.27
481 482 4.468007 AAAAACCAGACCGGACCG 57.532 55.556 9.46 6.99 38.63 4.79
495 496 7.804129 GCGTGTGTACAATCCATAGTTTAAAAA 59.196 33.333 0.00 0.00 0.00 1.94
496 497 7.041303 TGCGTGTGTACAATCCATAGTTTAAAA 60.041 33.333 0.00 0.00 0.00 1.52
497 498 6.427242 TGCGTGTGTACAATCCATAGTTTAAA 59.573 34.615 0.00 0.00 0.00 1.52
498 499 5.932883 TGCGTGTGTACAATCCATAGTTTAA 59.067 36.000 0.00 0.00 0.00 1.52
499 500 5.349270 GTGCGTGTGTACAATCCATAGTTTA 59.651 40.000 0.00 0.00 0.00 2.01
500 501 4.153475 GTGCGTGTGTACAATCCATAGTTT 59.847 41.667 0.00 0.00 0.00 2.66
501 502 3.682858 GTGCGTGTGTACAATCCATAGTT 59.317 43.478 0.00 0.00 0.00 2.24
502 503 3.056107 AGTGCGTGTGTACAATCCATAGT 60.056 43.478 0.00 0.00 32.48 2.12
503 504 3.521560 AGTGCGTGTGTACAATCCATAG 58.478 45.455 0.00 0.00 32.48 2.23
504 505 3.603158 AGTGCGTGTGTACAATCCATA 57.397 42.857 0.00 0.00 32.48 2.74
505 506 2.472695 AGTGCGTGTGTACAATCCAT 57.527 45.000 0.00 0.00 32.48 3.41
506 507 2.139917 GAAGTGCGTGTGTACAATCCA 58.860 47.619 0.00 0.00 32.48 3.41
507 508 2.139917 TGAAGTGCGTGTGTACAATCC 58.860 47.619 0.00 0.00 32.48 3.01
513 514 1.369692 CCCCTGAAGTGCGTGTGTA 59.630 57.895 0.00 0.00 0.00 2.90
514 515 2.111043 CCCCTGAAGTGCGTGTGT 59.889 61.111 0.00 0.00 0.00 3.72
520 521 1.153349 GGATCGACCCCTGAAGTGC 60.153 63.158 0.00 0.00 0.00 4.40
526 527 3.151906 GGGATGGATCGACCCCTG 58.848 66.667 0.00 0.00 37.85 4.45
530 531 1.965219 CGTAGGGGATGGATCGACC 59.035 63.158 0.00 0.00 39.54 4.79
548 549 2.738743 TGATGAGGAAATTGGGCTTCC 58.261 47.619 0.00 0.00 42.40 3.46
572 573 3.257393 CATGAGTGGGACTTTCTCGAAG 58.743 50.000 0.00 0.00 41.32 3.79
585 586 2.674852 CGATCAAAGTGGACATGAGTGG 59.325 50.000 0.00 0.00 0.00 4.00
595 596 2.223340 GGTTATGCAGCGATCAAAGTGG 60.223 50.000 0.00 0.00 0.00 4.00
695 696 5.892568 ACAATTAGAGTGCGTTCCTACTAG 58.107 41.667 0.00 0.00 0.00 2.57
706 707 5.986135 AGATAATGTCGGACAATTAGAGTGC 59.014 40.000 15.72 0.00 0.00 4.40
734 735 0.392998 TCGCCTCAAAGGAATCCTGC 60.393 55.000 0.90 0.00 37.67 4.85
737 738 2.480244 GCAAATCGCCTCAAAGGAATCC 60.480 50.000 0.00 0.00 37.67 3.01
849 860 3.244146 CCAATGTGGTTTTCAATGGCTGA 60.244 43.478 0.00 0.00 31.35 4.26
851 862 2.971330 TCCAATGTGGTTTTCAATGGCT 59.029 40.909 0.00 0.00 39.03 4.75
856 867 3.546724 TCTCGTCCAATGTGGTTTTCAA 58.453 40.909 0.00 0.00 39.03 2.69
977 991 1.198759 TTTGGAGTTCGGAGGGGGAG 61.199 60.000 0.00 0.00 0.00 4.30
978 992 1.151987 TTTGGAGTTCGGAGGGGGA 60.152 57.895 0.00 0.00 0.00 4.81
981 995 1.002502 GGGTTTGGAGTTCGGAGGG 60.003 63.158 0.00 0.00 0.00 4.30
982 996 1.207329 CTAGGGTTTGGAGTTCGGAGG 59.793 57.143 0.00 0.00 0.00 4.30
1057 1071 3.417224 TCGTCGTCAGGGTCGTCG 61.417 66.667 0.00 0.00 39.95 5.12
1171 1188 0.322546 TGACGACTAGGCTGCTGAGA 60.323 55.000 0.00 0.00 0.00 3.27
1414 1650 4.373116 GGTGGACTGAAGCGGCGA 62.373 66.667 12.98 0.00 0.00 5.54
1432 1668 3.712907 GGGCGAGGCTGGTAACCA 61.713 66.667 0.00 0.00 0.00 3.67
1510 1746 9.799106 AGAAGAATCCAAAAGAAACAGATCTAA 57.201 29.630 0.00 0.00 0.00 2.10
1564 1802 2.028763 CCGAACGGAACATACAACATCG 59.971 50.000 7.53 0.00 37.50 3.84
1614 1866 4.613622 CGACCAAACTGATAAACAAGGCAG 60.614 45.833 0.00 0.00 34.65 4.85
1628 1880 7.119262 CACCTTGAATTATCTAACGACCAAACT 59.881 37.037 0.00 0.00 0.00 2.66
1667 1919 4.019950 TCAGCTGAAGACAAGGAATCATCA 60.020 41.667 15.67 0.00 0.00 3.07
1670 1922 4.564782 ATCAGCTGAAGACAAGGAATCA 57.435 40.909 22.50 0.00 0.00 2.57
1755 2007 5.628797 ACCTTTCAATCAAAACAACCCAT 57.371 34.783 0.00 0.00 0.00 4.00
1937 2197 4.896482 GGACTGAGGGAGTACAATCTACAT 59.104 45.833 0.00 0.00 35.25 2.29
1946 2206 5.395611 ACTAATATGGGACTGAGGGAGTAC 58.604 45.833 0.00 0.00 33.83 2.73
1956 2216 3.704566 TGAGCGACAACTAATATGGGACT 59.295 43.478 0.00 0.00 0.00 3.85
1957 2217 4.054780 TGAGCGACAACTAATATGGGAC 57.945 45.455 0.00 0.00 0.00 4.46
1975 2235 6.519382 TCAGTGCTAGATACATCCATTTGAG 58.481 40.000 0.00 0.00 0.00 3.02
1976 2236 6.484364 TCAGTGCTAGATACATCCATTTGA 57.516 37.500 0.00 0.00 0.00 2.69
2026 2286 4.537965 CCTCCGTCTCATATTAGTTGACG 58.462 47.826 0.00 0.00 46.55 4.35
2028 2288 4.800023 TCCCTCCGTCTCATATTAGTTGA 58.200 43.478 0.00 0.00 0.00 3.18
2039 2299 3.957591 AAAAACTACTCCCTCCGTCTC 57.042 47.619 0.00 0.00 0.00 3.36
2080 2340 6.984474 AGAGAACTTACGTCAGAAATTTGTGA 59.016 34.615 13.63 13.63 0.00 3.58
2178 2438 8.971032 AGATCCTCTGATAGGTAAATTCTGAT 57.029 34.615 0.00 0.00 46.62 2.90
2244 2504 6.566753 GCTGTTTCACTCAGATGACCTTTTAC 60.567 42.308 0.00 0.00 35.20 2.01
2382 2642 0.179020 TGGCACCCAACTCACTCAAG 60.179 55.000 0.00 0.00 0.00 3.02
2407 2667 2.735259 AGGGGTTCTCAAGGTAAGGA 57.265 50.000 0.00 0.00 0.00 3.36
2463 2723 8.348507 GGCATCCATTAAGAGAAATCAAGTAAG 58.651 37.037 0.00 0.00 0.00 2.34
2508 2771 6.479884 AGAGAAGCAGATCAAACCATAACTT 58.520 36.000 0.00 0.00 0.00 2.66
2595 2858 7.613585 AGCATGGTGAAAATTTCATGTAATCA 58.386 30.769 11.87 4.92 42.47 2.57
2627 2890 9.286170 ACCAAACTTCCTAAAAATTACTCTCTC 57.714 33.333 0.00 0.00 0.00 3.20
3027 3311 1.205417 GTTGCAGTGCTTGGCCATAAT 59.795 47.619 17.60 0.00 0.00 1.28
3182 3469 8.532186 AGTTGTTATGGCATCCACATTAAATA 57.468 30.769 1.65 0.00 35.80 1.40
3256 3543 1.152860 TCAGCCCTTGTTTTGCCGA 60.153 52.632 0.00 0.00 0.00 5.54
3257 3544 1.286880 CTCAGCCCTTGTTTTGCCG 59.713 57.895 0.00 0.00 0.00 5.69
3263 3550 0.768221 TCAGGTCCTCAGCCCTTGTT 60.768 55.000 0.00 0.00 0.00 2.83
3349 3640 5.063880 AGGAATTCCTAAATATCCACGTGC 58.936 41.667 25.99 0.00 46.48 5.34
3436 3728 8.801299 TGTGAAGTTATCAGAATTGCCAAATAA 58.199 29.630 0.00 0.00 39.19 1.40
3528 3820 6.070656 TCTCAACCAAATCTCCATCAACTTT 58.929 36.000 0.00 0.00 0.00 2.66
3557 3849 1.091771 ATTCCGGAATCTGCAGCGTG 61.092 55.000 24.27 1.60 0.00 5.34
3558 3850 0.464036 TATTCCGGAATCTGCAGCGT 59.536 50.000 32.43 9.69 32.50 5.07
3569 3861 4.746535 TGCTGATGTACTTTATTCCGGA 57.253 40.909 0.00 0.00 0.00 5.14
3626 3918 4.794311 TGGATGATCCCTAATGCTGAAA 57.206 40.909 9.36 0.00 35.03 2.69
3651 3943 7.658982 GCAAGATGTGACTCCTCATATTCATAA 59.341 37.037 0.00 0.00 28.83 1.90
3680 3972 5.183530 TGATCAGGTCCAACAATTGATCT 57.816 39.130 13.59 0.00 42.75 2.75
3733 4027 4.581824 ACTACCTCAAGTTCAACACGACTA 59.418 41.667 0.00 0.00 0.00 2.59
3768 4062 1.010125 CGCCAAAACACTGACCACG 60.010 57.895 0.00 0.00 0.00 4.94
3896 4190 6.419791 TCCAAAATGTATCCCACGACTTAAT 58.580 36.000 0.00 0.00 0.00 1.40
3977 4271 1.165907 TCCGCAGTGCACTTTCCTTG 61.166 55.000 18.94 6.91 0.00 3.61
3989 4283 1.069204 CACTATGCTGGTATCCGCAGT 59.931 52.381 0.00 0.00 36.77 4.40
4008 4302 1.079612 CTGCACTCGCTGATGGACA 60.080 57.895 0.00 0.00 39.30 4.02
4081 4375 9.831737 CAAAAAGTAGACAATTCAGTATCCAAG 57.168 33.333 0.00 0.00 0.00 3.61
4122 4416 5.888161 ACATAGGGTCTTGGACAATGAAATC 59.112 40.000 11.17 0.00 33.68 2.17
4232 4526 6.555360 AGGAATCCTATGTTACTTCCTACCAG 59.445 42.308 0.00 0.00 42.94 4.00
4315 4609 7.675619 AGCTTATTGGGCATTATTAGGCTAATT 59.324 33.333 23.72 5.38 41.61 1.40
4322 4616 6.183347 AGGCTAGCTTATTGGGCATTATTAG 58.817 40.000 15.72 0.00 0.00 1.73
4323 4617 6.139679 AGGCTAGCTTATTGGGCATTATTA 57.860 37.500 15.72 0.00 0.00 0.98
4388 4686 4.096532 TCTTGGAGAGTAAGTATGCAGTCG 59.903 45.833 0.00 0.00 0.00 4.18
4397 4695 5.396884 GCCAATGGTATCTTGGAGAGTAAGT 60.397 44.000 0.00 0.00 44.95 2.24
4429 4728 2.476051 CCAAAGCAGTACAGCGCG 59.524 61.111 0.00 0.00 40.15 6.86
4442 4741 0.530211 GCCAATGCATATGCGCCAAA 60.530 50.000 22.21 5.15 45.83 3.28
4522 4821 6.711277 TCTGCTAAGAAAAGCTTATCTCCAA 58.289 36.000 0.00 0.00 43.19 3.53
4581 4880 4.062293 CAACCCAAAACACGACTATCTGA 58.938 43.478 0.00 0.00 0.00 3.27
4590 4889 0.594796 GCTGCTCAACCCAAAACACG 60.595 55.000 0.00 0.00 0.00 4.49
4650 4949 3.257127 GGTAGTAATTGCAAAGGCCAACA 59.743 43.478 5.01 0.00 40.13 3.33
4703 5002 2.196595 CCCCATCTGGAGAACCACTTA 58.803 52.381 0.00 0.00 41.77 2.24
4974 5273 2.698967 CCTTCATATCCCCTACCACCCA 60.699 54.545 0.00 0.00 0.00 4.51
5215 5514 6.901081 AAGTTAAGGCAAGCAAGATTAAGT 57.099 33.333 0.00 0.00 0.00 2.24
5216 5515 9.294030 CATTAAGTTAAGGCAAGCAAGATTAAG 57.706 33.333 1.21 0.00 0.00 1.85
5217 5516 8.802267 ACATTAAGTTAAGGCAAGCAAGATTAA 58.198 29.630 7.19 0.00 0.00 1.40
5218 5517 8.348285 ACATTAAGTTAAGGCAAGCAAGATTA 57.652 30.769 7.19 0.00 0.00 1.75
5219 5518 7.232118 ACATTAAGTTAAGGCAAGCAAGATT 57.768 32.000 7.19 0.00 0.00 2.40
5220 5519 6.840780 ACATTAAGTTAAGGCAAGCAAGAT 57.159 33.333 7.19 0.00 0.00 2.40
5221 5520 6.648879 AACATTAAGTTAAGGCAAGCAAGA 57.351 33.333 7.19 0.00 39.09 3.02
5222 5521 7.713764 AAAACATTAAGTTAAGGCAAGCAAG 57.286 32.000 7.19 0.00 40.26 4.01
5223 5522 7.766278 TGAAAAACATTAAGTTAAGGCAAGCAA 59.234 29.630 7.19 0.00 40.26 3.91
5224 5523 7.268586 TGAAAAACATTAAGTTAAGGCAAGCA 58.731 30.769 7.19 0.00 40.26 3.91
5225 5524 7.569408 GCTGAAAAACATTAAGTTAAGGCAAGC 60.569 37.037 7.19 4.55 40.26 4.01
5226 5525 7.653311 AGCTGAAAAACATTAAGTTAAGGCAAG 59.347 33.333 7.19 0.00 40.26 4.01
5227 5526 7.496747 AGCTGAAAAACATTAAGTTAAGGCAA 58.503 30.769 7.19 0.00 40.26 4.52
5228 5527 7.049799 AGCTGAAAAACATTAAGTTAAGGCA 57.950 32.000 7.19 0.00 40.26 4.75
5229 5528 7.946655 AAGCTGAAAAACATTAAGTTAAGGC 57.053 32.000 7.19 0.00 40.26 4.35
5240 5539 9.988350 CAGTAATTACGATAAGCTGAAAAACAT 57.012 29.630 9.91 0.00 0.00 2.71
5241 5540 7.960738 GCAGTAATTACGATAAGCTGAAAAACA 59.039 33.333 9.91 0.00 0.00 2.83
5242 5541 7.960738 TGCAGTAATTACGATAAGCTGAAAAAC 59.039 33.333 9.91 0.00 0.00 2.43
5243 5542 7.960738 GTGCAGTAATTACGATAAGCTGAAAAA 59.039 33.333 9.91 0.00 0.00 1.94
5244 5543 7.333423 AGTGCAGTAATTACGATAAGCTGAAAA 59.667 33.333 9.91 0.00 0.00 2.29
5245 5544 6.816640 AGTGCAGTAATTACGATAAGCTGAAA 59.183 34.615 9.91 0.00 0.00 2.69
5246 5545 6.338146 AGTGCAGTAATTACGATAAGCTGAA 58.662 36.000 9.91 0.00 0.00 3.02
5247 5546 5.902681 AGTGCAGTAATTACGATAAGCTGA 58.097 37.500 9.91 0.00 0.00 4.26
5248 5547 6.589830 AAGTGCAGTAATTACGATAAGCTG 57.410 37.500 9.91 2.62 0.00 4.24
5249 5548 8.888579 ATTAAGTGCAGTAATTACGATAAGCT 57.111 30.769 9.91 3.03 0.00 3.74
5250 5549 8.979574 AGATTAAGTGCAGTAATTACGATAAGC 58.020 33.333 9.91 10.44 0.00 3.09
5253 5552 8.761497 GCAAGATTAAGTGCAGTAATTACGATA 58.239 33.333 9.91 0.00 40.58 2.92
5254 5553 7.495934 AGCAAGATTAAGTGCAGTAATTACGAT 59.504 33.333 9.91 0.00 43.42 3.73
5255 5554 6.816640 AGCAAGATTAAGTGCAGTAATTACGA 59.183 34.615 9.91 0.00 43.42 3.43
5256 5555 7.005062 AGCAAGATTAAGTGCAGTAATTACG 57.995 36.000 9.91 6.54 43.42 3.18
5257 5556 7.218963 GCAAGCAAGATTAAGTGCAGTAATTAC 59.781 37.037 7.57 7.57 43.42 1.89
5258 5557 7.250569 GCAAGCAAGATTAAGTGCAGTAATTA 58.749 34.615 10.23 0.00 43.42 1.40
5259 5558 6.095377 GCAAGCAAGATTAAGTGCAGTAATT 58.905 36.000 10.23 0.00 43.42 1.40
5260 5559 5.393461 GGCAAGCAAGATTAAGTGCAGTAAT 60.393 40.000 10.23 0.00 43.42 1.89
5261 5560 4.082787 GGCAAGCAAGATTAAGTGCAGTAA 60.083 41.667 10.23 0.00 43.42 2.24
5262 5561 3.440173 GGCAAGCAAGATTAAGTGCAGTA 59.560 43.478 10.23 0.00 43.42 2.74
5263 5562 2.229784 GGCAAGCAAGATTAAGTGCAGT 59.770 45.455 10.23 0.00 43.42 4.40
5264 5563 2.490903 AGGCAAGCAAGATTAAGTGCAG 59.509 45.455 10.23 4.74 43.42 4.41
5265 5564 2.517959 AGGCAAGCAAGATTAAGTGCA 58.482 42.857 10.23 0.00 43.42 4.57
5266 5565 3.582714 AAGGCAAGCAAGATTAAGTGC 57.417 42.857 0.00 1.34 41.22 4.40
5267 5566 6.259550 AGTTAAGGCAAGCAAGATTAAGTG 57.740 37.500 0.00 0.00 0.00 3.16
5306 5605 6.089249 AGGTTTCCACAGCTGAAATAAAAG 57.911 37.500 23.35 0.00 34.50 2.27
5318 5617 2.689983 AGCAAAGTTGAGGTTTCCACAG 59.310 45.455 0.00 0.00 0.00 3.66
5348 5647 3.773860 TTGTTGCAGTTGTTACAGTGG 57.226 42.857 0.00 0.00 0.00 4.00
5588 5887 0.466555 CACCACGGAAACCCCTTTCA 60.467 55.000 0.00 0.00 38.04 2.69
5912 6211 2.465097 GATCATCTCGACCCTCGCCG 62.465 65.000 0.00 0.00 40.21 6.46
5963 6262 3.705051 TCCAAGGATGAACTAGTACCGT 58.295 45.455 0.00 0.00 0.00 4.83
6029 6328 6.892485 ACGGGTAGTTTAATATTACAGGCTT 58.108 36.000 0.00 0.00 0.00 4.35
6115 6414 6.498538 TGAACCAAAATAATACCACCATCCT 58.501 36.000 0.00 0.00 0.00 3.24
6183 6482 1.537202 CCGAGAAGCAACCCAAAGAAG 59.463 52.381 0.00 0.00 0.00 2.85
6244 6547 5.644644 GAGCAACCTGAAATCCTTATGTTG 58.355 41.667 0.00 0.00 35.82 3.33
6249 6552 2.939640 GCCGAGCAACCTGAAATCCTTA 60.940 50.000 0.00 0.00 0.00 2.69
6268 6571 1.582968 CATGTGACCAACAGCTGCC 59.417 57.895 15.27 0.00 43.64 4.85
6270 6573 0.885879 ATGCATGTGACCAACAGCTG 59.114 50.000 13.48 13.48 43.64 4.24
6271 6574 1.271379 CAATGCATGTGACCAACAGCT 59.729 47.619 0.00 0.00 43.64 4.24
6272 6575 1.670674 CCAATGCATGTGACCAACAGC 60.671 52.381 0.00 0.00 43.64 4.40
6273 6576 1.670674 GCCAATGCATGTGACCAACAG 60.671 52.381 0.00 0.00 43.64 3.16
6274 6577 0.317799 GCCAATGCATGTGACCAACA 59.682 50.000 0.00 0.00 44.79 3.33
6275 6578 0.390209 GGCCAATGCATGTGACCAAC 60.390 55.000 0.00 0.00 40.13 3.77
6276 6579 1.875420 CGGCCAATGCATGTGACCAA 61.875 55.000 2.24 0.00 40.13 3.67
6277 6580 2.341875 CGGCCAATGCATGTGACCA 61.342 57.895 2.24 0.00 40.13 4.02
6278 6581 2.491152 CGGCCAATGCATGTGACC 59.509 61.111 2.24 2.06 40.13 4.02
6279 6582 2.491152 CCGGCCAATGCATGTGAC 59.509 61.111 2.24 0.00 40.13 3.67
6280 6583 3.451004 GCCGGCCAATGCATGTGA 61.451 61.111 18.11 0.00 40.13 3.58
6281 6584 4.517815 GGCCGGCCAATGCATGTG 62.518 66.667 40.73 0.69 40.13 3.21
6284 6587 4.783501 AAGGGCCGGCCAATGCAT 62.784 61.111 44.46 19.55 40.13 3.96
6287 6590 3.762247 CACAAGGGCCGGCCAATG 61.762 66.667 44.46 39.21 37.98 2.82
6308 6620 3.517901 TCTGGTTATACCCACAACTCCTG 59.482 47.826 0.00 0.00 37.50 3.86
6383 6696 2.945008 TCATTGATGTTTCGAGCCATCC 59.055 45.455 18.29 6.48 37.30 3.51
6390 6703 7.647228 TGATGACTTTTTCATTGATGTTTCGA 58.353 30.769 0.00 0.00 45.67 3.71
6446 6784 1.915141 AGGCCTTGGTGAAACATGAG 58.085 50.000 0.00 0.00 39.98 2.90
6447 6785 3.737559 ATAGGCCTTGGTGAAACATGA 57.262 42.857 12.58 0.00 39.98 3.07
6448 6786 4.806640 AAATAGGCCTTGGTGAAACATG 57.193 40.909 12.58 0.00 39.98 3.21
6474 6826 2.203422 CCCCGTTCCCAGTGCAAA 60.203 61.111 0.00 0.00 0.00 3.68
6684 7116 6.588719 AAAAGGCACACTTAAGCATTATGA 57.411 33.333 1.29 0.00 38.85 2.15
6685 7117 6.751888 GGTAAAAGGCACACTTAAGCATTATG 59.248 38.462 1.29 0.00 38.85 1.90
6717 7149 7.331026 CACTAGGTCTTGATTTGACTAATGGA 58.669 38.462 0.00 0.00 35.04 3.41
6741 7177 4.404394 TGATTATCTCAACGGTTAGAGGCA 59.596 41.667 15.44 5.97 32.76 4.75
6834 7273 0.984230 TTGTACCAAGCAGGGAGAGG 59.016 55.000 0.10 0.00 43.89 3.69
6850 7289 0.771755 GGACCCTTCCCAAGTCTTGT 59.228 55.000 11.61 0.00 35.57 3.16
6908 7349 1.377725 CGCAGCCACCCATTCTTCT 60.378 57.895 0.00 0.00 0.00 2.85
6928 7369 3.627395 AATAAGGCTCATCGGTTGTCA 57.373 42.857 0.00 0.00 0.00 3.58
6959 7403 3.384467 CCAAAGGCCGAATTCAATGGTAT 59.616 43.478 6.22 0.00 0.00 2.73
6989 7433 5.587844 GCACCATCCTCATATAAGCTTATGG 59.412 44.000 25.99 20.54 38.84 2.74
6999 7443 4.240881 ACTTTGTGCACCATCCTCATAT 57.759 40.909 15.69 0.00 0.00 1.78
7008 7452 1.133945 TCAAGCCTACTTTGTGCACCA 60.134 47.619 15.69 0.00 32.29 4.17
7013 7457 1.168714 GCCCTCAAGCCTACTTTGTG 58.831 55.000 0.00 0.00 32.29 3.33
7014 7458 1.068121 AGCCCTCAAGCCTACTTTGT 58.932 50.000 0.00 0.00 32.29 2.83
7015 7459 1.815003 CAAGCCCTCAAGCCTACTTTG 59.185 52.381 0.00 0.00 32.29 2.77
7020 7465 2.026262 CCTTAACAAGCCCTCAAGCCTA 60.026 50.000 0.00 0.00 0.00 3.93
7049 7494 3.854669 CCCCTCTGGCTGCCGTAG 61.855 72.222 14.98 13.22 0.00 3.51
7080 7525 1.595794 CACGCCGTCTACAAGTGTTTT 59.404 47.619 0.00 0.00 0.00 2.43
7081 7526 1.214367 CACGCCGTCTACAAGTGTTT 58.786 50.000 0.00 0.00 0.00 2.83
7082 7527 1.219522 GCACGCCGTCTACAAGTGTT 61.220 55.000 0.00 0.00 35.46 3.32
7083 7528 1.663702 GCACGCCGTCTACAAGTGT 60.664 57.895 0.00 0.00 35.46 3.55
7084 7529 2.380410 GGCACGCCGTCTACAAGTG 61.380 63.158 0.00 0.00 36.05 3.16
7085 7530 2.048503 GGCACGCCGTCTACAAGT 60.049 61.111 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.