Multiple sequence alignment - TraesCS7D01G336900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G336900 chr7D 100.000 3504 0 0 1 3504 429707081 429710584 0.000000e+00 6471.0
1 TraesCS7D01G336900 chr7D 92.396 1302 66 17 938 2229 236647607 236646329 0.000000e+00 1825.0
2 TraesCS7D01G336900 chr7D 96.380 442 11 4 2271 2708 236646425 236645985 0.000000e+00 723.0
3 TraesCS7D01G336900 chr7D 88.366 404 29 6 304 690 236649849 236649447 1.470000e-128 470.0
4 TraesCS7D01G336900 chr7D 97.605 167 2 2 2202 2366 429709212 429709378 5.720000e-73 285.0
5 TraesCS7D01G336900 chr7D 97.605 167 2 2 2132 2298 429709282 429709446 5.720000e-73 285.0
6 TraesCS7D01G336900 chr7D 89.362 141 11 2 2754 2891 430095293 430095432 1.290000e-39 174.0
7 TraesCS7D01G336900 chr7D 83.333 192 18 10 672 850 575898971 575899161 7.780000e-37 165.0
8 TraesCS7D01G336900 chr7D 95.918 98 2 2 2271 2366 429709212 429709309 1.300000e-34 158.0
9 TraesCS7D01G336900 chr7D 95.918 98 2 2 2132 2229 429709351 429709446 1.300000e-34 158.0
10 TraesCS7D01G336900 chr7D 86.806 144 16 2 697 837 589518846 589518703 1.300000e-34 158.0
11 TraesCS7D01G336900 chr7D 94.898 98 3 2 2202 2298 236646425 236646329 6.060000e-33 152.0
12 TraesCS7D01G336900 chr7D 94.444 54 3 0 249 302 236678556 236678503 2.240000e-12 84.2
13 TraesCS7D01G336900 chr7B 93.919 1332 65 10 906 2229 213256752 213255429 0.000000e+00 1997.0
14 TraesCS7D01G336900 chr7B 90.652 813 43 17 2721 3504 447218231 447219039 0.000000e+00 1050.0
15 TraesCS7D01G336900 chr7B 89.014 710 21 15 2821 3504 386555739 386555061 0.000000e+00 826.0
16 TraesCS7D01G336900 chr7B 94.796 442 18 5 2271 2708 213255525 213255085 0.000000e+00 684.0
17 TraesCS7D01G336900 chr7B 85.563 471 43 10 244 690 213266866 213266397 1.470000e-128 470.0
18 TraesCS7D01G336900 chr7B 88.406 138 15 1 2754 2891 447476265 447476401 7.780000e-37 165.0
19 TraesCS7D01G336900 chr7B 84.483 174 15 8 2908 3079 447476556 447476719 1.010000e-35 161.0
20 TraesCS7D01G336900 chr7B 93.878 98 4 2 2202 2298 213255525 213255429 2.820000e-31 147.0
21 TraesCS7D01G336900 chr7B 88.350 103 9 1 3133 3232 447476812 447476914 1.710000e-23 121.0
22 TraesCS7D01G336900 chr7A 92.649 925 52 8 1311 2229 251750104 251749190 0.000000e+00 1317.0
23 TraesCS7D01G336900 chr7A 91.537 449 32 5 12 456 251751623 251751177 6.430000e-172 614.0
24 TraesCS7D01G336900 chr7A 94.065 337 12 3 924 1252 251750805 251750469 4.040000e-139 505.0
25 TraesCS7D01G336900 chr7A 95.406 283 12 1 2271 2552 251749286 251749004 1.920000e-122 449.0
26 TraesCS7D01G336900 chr7A 87.879 165 18 1 529 691 251751124 251750960 3.570000e-45 193.0
27 TraesCS7D01G336900 chr7A 89.333 150 11 3 2744 2890 502623601 502623454 2.150000e-42 183.0
28 TraesCS7D01G336900 chr7A 97.222 108 2 1 2599 2706 251749010 251748904 7.730000e-42 182.0
29 TraesCS7D01G336900 chr7A 90.164 122 11 1 3240 3360 502361108 502360987 1.300000e-34 158.0
30 TraesCS7D01G336900 chr7A 93.878 98 4 2 2202 2298 251749286 251749190 2.820000e-31 147.0
31 TraesCS7D01G336900 chr7A 94.624 93 5 0 2919 3011 502381654 502381562 1.010000e-30 145.0
32 TraesCS7D01G336900 chr7A 92.079 101 8 0 3133 3233 502622980 502622880 3.650000e-30 143.0
33 TraesCS7D01G336900 chr7A 79.188 197 23 6 2920 3105 502623250 502623061 1.710000e-23 121.0
34 TraesCS7D01G336900 chr7A 89.362 94 9 1 3133 3226 502362238 502362146 2.210000e-22 117.0
35 TraesCS7D01G336900 chr7A 79.762 168 28 5 692 859 671525385 671525224 2.210000e-22 117.0
36 TraesCS7D01G336900 chr7A 80.537 149 17 6 2754 2891 502381956 502381809 1.720000e-18 104.0
37 TraesCS7D01G336900 chr7A 87.805 82 9 1 2810 2891 665376709 665376629 1.040000e-15 95.3
38 TraesCS7D01G336900 chr4B 78.808 604 77 29 1636 2225 642088456 642087890 3.330000e-95 359.0
39 TraesCS7D01G336900 chr4B 85.232 237 13 10 1026 1248 642088939 642088711 1.270000e-54 224.0
40 TraesCS7D01G336900 chr4B 82.486 177 16 10 694 860 55032200 55032371 1.310000e-29 141.0
41 TraesCS7D01G336900 chr5A 78.223 574 69 22 1026 1568 680078548 680078000 2.030000e-82 316.0
42 TraesCS7D01G336900 chr5A 80.142 282 36 10 2276 2550 680076970 680076702 3.570000e-45 193.0
43 TraesCS7D01G336900 chr5A 83.562 146 21 3 718 860 485849035 485849180 2.190000e-27 134.0
44 TraesCS7D01G336900 chr4D 80.208 288 33 12 2271 2550 499292117 499291846 9.920000e-46 195.0
45 TraesCS7D01G336900 chr2A 85.030 167 24 1 697 862 44721596 44721430 6.020000e-38 169.0
46 TraesCS7D01G336900 chr3D 83.436 163 20 6 697 853 2800561 2800400 1.010000e-30 145.0
47 TraesCS7D01G336900 chr5D 84.828 145 10 8 689 821 246301829 246301973 6.100000e-28 135.0
48 TraesCS7D01G336900 chr5D 85.000 140 14 3 697 829 519200539 519200400 6.100000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G336900 chr7D 429707081 429710584 3503 False 1471.400000 6471 97.409200 1 3504 5 chr7D.!!$F3 3503
1 TraesCS7D01G336900 chr7D 236645985 236649849 3864 True 792.500000 1825 93.010000 304 2708 4 chr7D.!!$R3 2404
2 TraesCS7D01G336900 chr7B 447218231 447219039 808 False 1050.000000 1050 90.652000 2721 3504 1 chr7B.!!$F1 783
3 TraesCS7D01G336900 chr7B 213255085 213256752 1667 True 942.666667 1997 94.197667 906 2708 3 chr7B.!!$R3 1802
4 TraesCS7D01G336900 chr7B 386555061 386555739 678 True 826.000000 826 89.014000 2821 3504 1 chr7B.!!$R2 683
5 TraesCS7D01G336900 chr7A 251748904 251751623 2719 True 486.714286 1317 93.233714 12 2706 7 chr7A.!!$R3 2694
6 TraesCS7D01G336900 chr4B 642087890 642088939 1049 True 291.500000 359 82.020000 1026 2225 2 chr4B.!!$R1 1199
7 TraesCS7D01G336900 chr5A 680076702 680078548 1846 True 254.500000 316 79.182500 1026 2550 2 chr5A.!!$R1 1524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.174617 GAGAGAACTGGCTTCCTCGG 59.825 60.0 0.00 0.00 0.00 4.63 F
241 242 0.251832 AGAGAACTGGCTTCCTCGGA 60.252 55.0 0.00 0.00 0.00 4.55 F
247 249 0.321671 CTGGCTTCCTCGGAGACAAA 59.678 55.0 6.58 0.00 0.00 2.83 F
1449 3681 0.647410 GTCCATGACAACATCGCGAG 59.353 55.0 16.66 9.51 34.15 5.03 F
2199 4918 0.681175 AGGGGCAAAGTGTCAAATGC 59.319 50.0 0.00 0.00 38.06 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 3681 0.833949 AAGCTTCGGAATCTCCTCCC 59.166 55.000 0.00 0.00 33.30 4.30 R
1873 4577 0.952010 CCAGCAAAATGGCAAGGCAC 60.952 55.000 0.00 0.00 35.83 5.01 R
2243 4962 0.890683 GACACTTTGCCCCTGATTGG 59.109 55.000 0.00 0.00 0.00 3.16 R
2250 4969 0.681175 AGCATTTGACACTTTGCCCC 59.319 50.000 0.00 0.00 35.71 5.80 R
3273 6004 1.082756 CGAACGTGCTGCACCTTTC 60.083 57.895 25.61 23.85 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.472163 GCATATTTTTACCTGGTTGATCGTTG 59.528 38.462 3.84 0.00 0.00 4.10
93 94 3.132824 GGGCAATATGGTTTTCAAGGAGG 59.867 47.826 0.00 0.00 0.00 4.30
100 101 1.889170 GGTTTTCAAGGAGGAAGGCAG 59.111 52.381 0.00 0.00 0.00 4.85
108 109 1.079750 GAGGAAGGCAGTCCACGAC 60.080 63.158 9.61 0.00 40.48 4.34
117 118 2.382519 GCAGTCCACGACGATATACAC 58.617 52.381 0.00 0.00 37.67 2.90
124 125 3.303857 CCACGACGATATACACCAGAGTC 60.304 52.174 0.00 0.00 0.00 3.36
125 126 2.877168 ACGACGATATACACCAGAGTCC 59.123 50.000 0.00 0.00 0.00 3.85
135 136 9.646427 GATATACACCAGAGTCCAATTTCTATC 57.354 37.037 0.00 0.00 0.00 2.08
158 159 8.585471 ATCCATCATTTTGTCAACTCTTACAT 57.415 30.769 0.00 0.00 0.00 2.29
162 163 6.446318 TCATTTTGTCAACTCTTACATTGCC 58.554 36.000 0.00 0.00 0.00 4.52
174 175 1.462616 ACATTGCCGAGCTAAATGCA 58.537 45.000 9.59 0.00 45.94 3.96
182 183 3.428045 GCCGAGCTAAATGCAATTCAAGT 60.428 43.478 0.00 0.00 45.94 3.16
198 199 0.777446 AAGTCCCAAAGGCTAGCCAA 59.223 50.000 34.70 10.38 38.92 4.52
220 221 5.607939 ACCGATACAAGTTCATGATACCA 57.392 39.130 0.00 0.00 0.00 3.25
228 229 6.402222 ACAAGTTCATGATACCAGAGAGAAC 58.598 40.000 0.00 0.00 35.40 3.01
239 240 1.135141 CAGAGAGAACTGGCTTCCTCG 60.135 57.143 0.00 0.00 34.12 4.63
240 241 0.174617 GAGAGAACTGGCTTCCTCGG 59.825 60.000 0.00 0.00 0.00 4.63
241 242 0.251832 AGAGAACTGGCTTCCTCGGA 60.252 55.000 0.00 0.00 0.00 4.55
247 249 0.321671 CTGGCTTCCTCGGAGACAAA 59.678 55.000 6.58 0.00 0.00 2.83
253 255 0.748450 TCCTCGGAGACAAACAACGT 59.252 50.000 6.58 0.00 0.00 3.99
259 261 3.436015 TCGGAGACAAACAACGTGAAAAA 59.564 39.130 0.00 0.00 0.00 1.94
291 293 2.092838 GGAGCTTTCAATCAGAACGACG 59.907 50.000 0.00 0.00 35.56 5.12
369 374 1.854743 CGATTGTGGTGCAGAGTATCG 59.145 52.381 0.00 0.00 42.67 2.92
428 433 0.744414 GCCTTGCACTAGCCGATGAA 60.744 55.000 0.00 0.00 41.13 2.57
449 456 6.702329 TGAACTTTCCCTCTCTCAAGAATAC 58.298 40.000 0.00 0.00 0.00 1.89
545 602 4.950050 AGGAGCGTAGAAATCATTTCGAT 58.050 39.130 4.42 0.00 44.29 3.59
550 607 7.042658 GGAGCGTAGAAATCATTTCGATAAGTT 60.043 37.037 4.42 0.00 44.29 2.66
580 637 8.373992 GTCAGTTTATGAGCGTAGAAACTTTAG 58.626 37.037 11.56 4.17 39.36 1.85
600 657 7.663081 ACTTTAGTTTTGATGCTCATTCTCTCA 59.337 33.333 0.00 0.00 0.00 3.27
616 673 4.119862 TCTCTCACAAAGCACACTGTTAC 58.880 43.478 0.00 0.00 0.00 2.50
627 684 5.190677 AGCACACTGTTACTTTAGGTGTTT 58.809 37.500 0.00 0.00 38.79 2.83
672 729 1.741706 CTTATGACCCTGCTGCAGTTG 59.258 52.381 26.41 19.27 0.00 3.16
673 730 0.692476 TATGACCCTGCTGCAGTTGT 59.308 50.000 26.41 22.09 0.00 3.32
679 736 1.267806 CCCTGCTGCAGTTGTTGTAAG 59.732 52.381 26.41 9.03 0.00 2.34
688 745 5.895928 TGCAGTTGTTGTAAGCATTGTTTA 58.104 33.333 0.00 0.00 0.00 2.01
689 746 6.511416 TGCAGTTGTTGTAAGCATTGTTTAT 58.489 32.000 0.00 0.00 0.00 1.40
690 747 6.420306 TGCAGTTGTTGTAAGCATTGTTTATG 59.580 34.615 0.00 0.00 37.31 1.90
691 748 6.128849 GCAGTTGTTGTAAGCATTGTTTATGG 60.129 38.462 0.00 0.00 34.66 2.74
692 749 6.365789 CAGTTGTTGTAAGCATTGTTTATGGG 59.634 38.462 0.00 0.00 34.66 4.00
693 750 5.398603 TGTTGTAAGCATTGTTTATGGGG 57.601 39.130 0.00 0.00 34.66 4.96
694 751 4.835615 TGTTGTAAGCATTGTTTATGGGGT 59.164 37.500 0.00 0.00 34.66 4.95
695 752 6.010850 TGTTGTAAGCATTGTTTATGGGGTA 58.989 36.000 0.00 0.00 34.66 3.69
696 753 6.665680 TGTTGTAAGCATTGTTTATGGGGTAT 59.334 34.615 0.00 0.00 34.66 2.73
697 754 6.707440 TGTAAGCATTGTTTATGGGGTATG 57.293 37.500 0.00 0.00 34.66 2.39
698 755 5.596361 TGTAAGCATTGTTTATGGGGTATGG 59.404 40.000 0.00 0.00 34.66 2.74
699 756 2.965147 AGCATTGTTTATGGGGTATGGC 59.035 45.455 0.00 0.00 34.66 4.40
700 757 2.965147 GCATTGTTTATGGGGTATGGCT 59.035 45.455 0.00 0.00 34.66 4.75
701 758 4.141041 AGCATTGTTTATGGGGTATGGCTA 60.141 41.667 0.00 0.00 34.66 3.93
702 759 4.218417 GCATTGTTTATGGGGTATGGCTAG 59.782 45.833 0.00 0.00 34.66 3.42
703 760 4.447138 TTGTTTATGGGGTATGGCTAGG 57.553 45.455 0.00 0.00 0.00 3.02
704 761 3.399454 TGTTTATGGGGTATGGCTAGGT 58.601 45.455 0.00 0.00 0.00 3.08
705 762 3.393278 TGTTTATGGGGTATGGCTAGGTC 59.607 47.826 0.00 0.00 0.00 3.85
706 763 3.354233 TTATGGGGTATGGCTAGGTCA 57.646 47.619 0.00 0.00 0.00 4.02
707 764 2.440494 ATGGGGTATGGCTAGGTCAT 57.560 50.000 0.00 0.00 0.00 3.06
708 765 3.577968 ATGGGGTATGGCTAGGTCATA 57.422 47.619 0.00 0.00 0.00 2.15
709 766 2.902608 TGGGGTATGGCTAGGTCATAG 58.097 52.381 0.00 0.00 30.39 2.23
710 767 2.181419 TGGGGTATGGCTAGGTCATAGT 59.819 50.000 0.00 0.00 30.39 2.12
711 768 2.832733 GGGGTATGGCTAGGTCATAGTC 59.167 54.545 0.00 0.00 36.58 2.59
712 769 2.492484 GGGTATGGCTAGGTCATAGTCG 59.508 54.545 0.00 0.00 39.10 4.18
713 770 3.418995 GGTATGGCTAGGTCATAGTCGA 58.581 50.000 0.00 0.00 39.10 4.20
714 771 3.190953 GGTATGGCTAGGTCATAGTCGAC 59.809 52.174 7.70 7.70 39.10 4.20
715 772 2.730934 TGGCTAGGTCATAGTCGACT 57.269 50.000 23.66 23.66 39.10 4.18
716 773 2.298610 TGGCTAGGTCATAGTCGACTG 58.701 52.381 28.12 13.36 39.10 3.51
717 774 2.092592 TGGCTAGGTCATAGTCGACTGA 60.093 50.000 28.12 15.63 39.10 3.41
718 775 2.550606 GGCTAGGTCATAGTCGACTGAG 59.449 54.545 28.12 18.97 36.12 3.35
719 776 3.468770 GCTAGGTCATAGTCGACTGAGA 58.531 50.000 28.12 20.89 36.12 3.27
720 777 4.069304 GCTAGGTCATAGTCGACTGAGAT 58.931 47.826 28.12 10.98 36.12 2.75
721 778 4.517453 GCTAGGTCATAGTCGACTGAGATT 59.483 45.833 28.12 17.42 36.12 2.40
722 779 5.009210 GCTAGGTCATAGTCGACTGAGATTT 59.991 44.000 28.12 17.13 36.12 2.17
723 780 6.205076 GCTAGGTCATAGTCGACTGAGATTTA 59.795 42.308 28.12 17.29 36.12 1.40
724 781 7.255173 GCTAGGTCATAGTCGACTGAGATTTAA 60.255 40.741 28.12 5.53 36.12 1.52
725 782 6.797454 AGGTCATAGTCGACTGAGATTTAAC 58.203 40.000 28.12 12.41 36.12 2.01
726 783 5.978322 GGTCATAGTCGACTGAGATTTAACC 59.022 44.000 28.12 16.83 36.12 2.85
727 784 6.405508 GGTCATAGTCGACTGAGATTTAACCA 60.406 42.308 28.12 3.35 36.12 3.67
728 785 7.033791 GTCATAGTCGACTGAGATTTAACCAA 58.966 38.462 28.12 3.13 32.92 3.67
729 786 7.221067 GTCATAGTCGACTGAGATTTAACCAAG 59.779 40.741 28.12 0.41 32.92 3.61
730 787 5.470047 AGTCGACTGAGATTTAACCAAGT 57.530 39.130 19.30 0.00 0.00 3.16
731 788 5.471257 AGTCGACTGAGATTTAACCAAGTC 58.529 41.667 19.30 0.00 0.00 3.01
732 789 5.244178 AGTCGACTGAGATTTAACCAAGTCT 59.756 40.000 19.30 0.00 33.74 3.24
733 790 5.927115 GTCGACTGAGATTTAACCAAGTCTT 59.073 40.000 8.70 0.00 31.40 3.01
734 791 7.039923 AGTCGACTGAGATTTAACCAAGTCTTA 60.040 37.037 19.30 0.00 31.40 2.10
735 792 7.273815 GTCGACTGAGATTTAACCAAGTCTTAG 59.726 40.741 8.70 1.73 38.97 2.18
736 793 7.039923 TCGACTGAGATTTAACCAAGTCTTAGT 60.040 37.037 6.92 6.92 44.67 2.24
737 794 8.468720 GACTGAGATTTAACCAAGTCTTAGTC 57.531 38.462 14.53 14.53 46.75 2.59
738 795 7.963532 ACTGAGATTTAACCAAGTCTTAGTCA 58.036 34.615 2.74 0.00 40.87 3.41
739 796 8.429641 ACTGAGATTTAACCAAGTCTTAGTCAA 58.570 33.333 2.74 0.00 40.87 3.18
740 797 8.833231 TGAGATTTAACCAAGTCTTAGTCAAG 57.167 34.615 0.00 0.00 31.40 3.02
741 798 8.429641 TGAGATTTAACCAAGTCTTAGTCAAGT 58.570 33.333 0.00 0.00 31.40 3.16
742 799 8.608844 AGATTTAACCAAGTCTTAGTCAAGTG 57.391 34.615 0.00 0.00 33.20 3.16
743 800 8.429641 AGATTTAACCAAGTCTTAGTCAAGTGA 58.570 33.333 0.00 0.00 33.20 3.41
744 801 7.781548 TTTAACCAAGTCTTAGTCAAGTGAC 57.218 36.000 3.12 3.12 45.08 3.67
760 817 8.534333 GTCAAGTGACATACATGTAAGAAAGA 57.466 34.615 14.69 1.69 44.18 2.52
761 818 8.988934 GTCAAGTGACATACATGTAAGAAAGAA 58.011 33.333 14.69 0.00 44.18 2.52
762 819 9.554395 TCAAGTGACATACATGTAAGAAAGAAA 57.446 29.630 14.69 0.00 41.95 2.52
790 847 4.789012 AAAAATGCACGGATCTCAATGT 57.211 36.364 0.00 0.00 0.00 2.71
791 848 5.895636 AAAAATGCACGGATCTCAATGTA 57.104 34.783 0.00 0.00 0.00 2.29
792 849 5.895636 AAAATGCACGGATCTCAATGTAA 57.104 34.783 0.00 0.00 0.00 2.41
793 850 5.490139 AAATGCACGGATCTCAATGTAAG 57.510 39.130 0.00 0.00 0.00 2.34
794 851 3.885724 TGCACGGATCTCAATGTAAGA 57.114 42.857 0.00 0.00 0.00 2.10
795 852 4.406648 TGCACGGATCTCAATGTAAGAT 57.593 40.909 0.00 0.00 36.19 2.40
796 853 4.371786 TGCACGGATCTCAATGTAAGATC 58.628 43.478 4.85 4.85 45.54 2.75
797 854 4.100035 TGCACGGATCTCAATGTAAGATCT 59.900 41.667 11.66 0.00 45.56 2.75
798 855 4.683781 GCACGGATCTCAATGTAAGATCTC 59.316 45.833 11.66 3.46 45.56 2.75
799 856 5.737349 GCACGGATCTCAATGTAAGATCTCA 60.737 44.000 11.66 0.00 45.56 3.27
800 857 5.689514 CACGGATCTCAATGTAAGATCTCAC 59.310 44.000 11.66 0.00 45.56 3.51
801 858 4.914504 CGGATCTCAATGTAAGATCTCACG 59.085 45.833 11.66 5.01 45.56 4.35
802 859 5.278022 CGGATCTCAATGTAAGATCTCACGA 60.278 44.000 11.66 0.00 45.56 4.35
803 860 6.507900 GGATCTCAATGTAAGATCTCACGAA 58.492 40.000 11.66 0.00 45.56 3.85
804 861 7.151308 GGATCTCAATGTAAGATCTCACGAAT 58.849 38.462 11.66 0.00 45.56 3.34
805 862 8.300286 GGATCTCAATGTAAGATCTCACGAATA 58.700 37.037 11.66 0.00 45.56 1.75
806 863 9.853555 GATCTCAATGTAAGATCTCACGAATAT 57.146 33.333 0.00 0.00 43.78 1.28
814 871 9.649167 TGTAAGATCTCACGAATATAGTATCGA 57.351 33.333 11.05 0.00 41.43 3.59
815 872 9.904647 GTAAGATCTCACGAATATAGTATCGAC 57.095 37.037 11.05 0.00 41.43 4.20
816 873 8.780846 AAGATCTCACGAATATAGTATCGACT 57.219 34.615 11.05 0.00 41.43 4.18
817 874 8.192068 AGATCTCACGAATATAGTATCGACTG 57.808 38.462 11.05 2.51 41.43 3.51
818 875 8.035984 AGATCTCACGAATATAGTATCGACTGA 58.964 37.037 11.05 5.79 41.43 3.41
819 876 7.583860 TCTCACGAATATAGTATCGACTGAG 57.416 40.000 11.05 12.65 40.57 3.35
820 877 7.376615 TCTCACGAATATAGTATCGACTGAGA 58.623 38.462 16.30 16.30 43.16 3.27
821 878 7.328982 TCTCACGAATATAGTATCGACTGAGAC 59.671 40.741 16.30 0.00 41.84 3.36
822 879 6.927381 TCACGAATATAGTATCGACTGAGACA 59.073 38.462 11.05 0.00 41.43 3.41
823 880 7.603024 TCACGAATATAGTATCGACTGAGACAT 59.397 37.037 11.05 0.00 41.43 3.06
824 881 8.870879 CACGAATATAGTATCGACTGAGACATA 58.129 37.037 11.05 0.00 41.43 2.29
825 882 9.433153 ACGAATATAGTATCGACTGAGACATAA 57.567 33.333 11.05 0.00 41.43 1.90
826 883 9.691795 CGAATATAGTATCGACTGAGACATAAC 57.308 37.037 0.00 0.00 41.43 1.89
831 888 7.159322 AGTATCGACTGAGACATAACAAAGT 57.841 36.000 0.00 0.00 38.81 2.66
832 889 7.251994 AGTATCGACTGAGACATAACAAAGTC 58.748 38.462 0.00 0.00 38.81 3.01
840 897 5.707242 AGACATAACAAAGTCTCAGTCGA 57.293 39.130 0.00 0.00 40.96 4.20
841 898 5.462405 AGACATAACAAAGTCTCAGTCGAC 58.538 41.667 7.70 7.70 40.96 4.20
842 899 5.241949 AGACATAACAAAGTCTCAGTCGACT 59.758 40.000 13.58 13.58 45.73 4.18
843 900 6.430308 AGACATAACAAAGTCTCAGTCGACTA 59.570 38.462 19.57 0.00 43.14 2.59
844 901 6.978338 ACATAACAAAGTCTCAGTCGACTAA 58.022 36.000 19.57 1.94 43.14 2.24
845 902 7.085116 ACATAACAAAGTCTCAGTCGACTAAG 58.915 38.462 19.57 14.47 43.14 2.18
846 903 5.769484 AACAAAGTCTCAGTCGACTAAGA 57.231 39.130 19.57 17.01 43.14 2.10
847 904 5.968528 ACAAAGTCTCAGTCGACTAAGAT 57.031 39.130 21.21 3.80 43.14 2.40
848 905 6.334102 ACAAAGTCTCAGTCGACTAAGATT 57.666 37.500 21.21 14.59 43.14 2.40
849 906 6.383415 ACAAAGTCTCAGTCGACTAAGATTC 58.617 40.000 21.21 9.72 43.14 2.52
850 907 6.016192 ACAAAGTCTCAGTCGACTAAGATTCA 60.016 38.462 21.21 0.00 43.14 2.57
851 908 5.811399 AGTCTCAGTCGACTAAGATTCAG 57.189 43.478 21.21 5.35 42.19 3.02
852 909 4.095782 AGTCTCAGTCGACTAAGATTCAGC 59.904 45.833 21.21 8.30 42.19 4.26
853 910 4.010349 TCTCAGTCGACTAAGATTCAGCA 58.990 43.478 19.57 0.00 0.00 4.41
854 911 4.459337 TCTCAGTCGACTAAGATTCAGCAA 59.541 41.667 19.57 0.00 0.00 3.91
855 912 4.738124 TCAGTCGACTAAGATTCAGCAAG 58.262 43.478 19.57 0.73 0.00 4.01
856 913 4.459337 TCAGTCGACTAAGATTCAGCAAGA 59.541 41.667 19.57 3.42 0.00 3.02
857 914 4.560819 CAGTCGACTAAGATTCAGCAAGAC 59.439 45.833 19.57 0.00 0.00 3.01
858 915 4.461081 AGTCGACTAAGATTCAGCAAGACT 59.539 41.667 18.46 0.00 0.00 3.24
942 2811 3.290710 GACTGATCTCTGAGCTCTCCTT 58.709 50.000 16.19 0.00 0.00 3.36
961 2830 3.545703 CTTAGTTAAGGCCCATGGACTG 58.454 50.000 15.22 0.00 42.44 3.51
968 2837 0.899717 GGCCCATGGACTGCTTTCAA 60.900 55.000 15.22 0.00 0.00 2.69
1014 2891 1.467734 GCAGCCATGTCTTCTGTCTTG 59.532 52.381 0.00 0.00 0.00 3.02
1075 2961 4.783621 GGCAGGCGATGGAGCACA 62.784 66.667 0.00 0.00 39.27 4.57
1299 3190 3.195182 CACTTCTCATCTCTGCTTCCTCA 59.805 47.826 0.00 0.00 0.00 3.86
1449 3681 0.647410 GTCCATGACAACATCGCGAG 59.353 55.000 16.66 9.51 34.15 5.03
1684 4383 9.836076 ATGTTTTTAGCTTTATCCTTTTCGTAC 57.164 29.630 0.00 0.00 0.00 3.67
1745 4447 3.987868 TCTCAGTTTAGTGTGATGCGTTC 59.012 43.478 0.00 0.00 0.00 3.95
1898 4608 3.469739 CTTGCCATTTTGCTGGAAGTTT 58.530 40.909 0.00 0.00 38.69 2.66
1907 4617 6.469782 TTTTGCTGGAAGTTTCTTGATCTT 57.530 33.333 0.00 0.00 35.30 2.40
1939 4658 9.739276 TGCTTATTATCCTTTTATATGTGAGGG 57.261 33.333 0.00 0.00 0.00 4.30
1945 4664 5.538877 TCCTTTTATATGTGAGGGAGGAGT 58.461 41.667 0.00 0.00 0.00 3.85
1947 4666 6.099845 TCCTTTTATATGTGAGGGAGGAGTTC 59.900 42.308 0.00 0.00 0.00 3.01
1961 4680 4.019231 GGAGGAGTTCCATTAGTTGGTCTT 60.019 45.833 0.28 0.00 46.52 3.01
1969 4688 5.385198 TCCATTAGTTGGTCTTTGAAGCTT 58.615 37.500 0.00 0.00 46.52 3.74
1972 4691 6.015940 CCATTAGTTGGTCTTTGAAGCTTTCT 60.016 38.462 0.00 0.00 40.99 2.52
1995 4714 8.974060 TCTGTTAAGAAAACCATTTCAGTAGT 57.026 30.769 4.34 0.00 46.03 2.73
1996 4715 9.403583 TCTGTTAAGAAAACCATTTCAGTAGTT 57.596 29.630 4.34 0.00 46.03 2.24
2060 4779 3.447742 TCGTGTGAATCATCATCTTCCG 58.552 45.455 0.00 0.00 38.01 4.30
2096 4815 3.008923 TGGTACATCATCAGCAAAGGTGA 59.991 43.478 1.08 1.08 44.17 4.02
2192 4911 3.056213 CCAATCAGGGGCAAAGTGT 57.944 52.632 0.00 0.00 0.00 3.55
2193 4912 0.890683 CCAATCAGGGGCAAAGTGTC 59.109 55.000 0.00 0.00 0.00 3.67
2194 4913 1.619654 CAATCAGGGGCAAAGTGTCA 58.380 50.000 0.00 0.00 0.00 3.58
2195 4914 1.962807 CAATCAGGGGCAAAGTGTCAA 59.037 47.619 0.00 0.00 0.00 3.18
2196 4915 2.364970 CAATCAGGGGCAAAGTGTCAAA 59.635 45.455 0.00 0.00 0.00 2.69
2197 4916 2.380064 TCAGGGGCAAAGTGTCAAAT 57.620 45.000 0.00 0.00 0.00 2.32
2198 4917 1.962807 TCAGGGGCAAAGTGTCAAATG 59.037 47.619 0.00 0.00 0.00 2.32
2199 4918 0.681175 AGGGGCAAAGTGTCAAATGC 59.319 50.000 0.00 0.00 38.06 3.56
2200 4919 0.681175 GGGGCAAAGTGTCAAATGCT 59.319 50.000 5.92 0.00 38.79 3.79
2201 4920 1.606224 GGGGCAAAGTGTCAAATGCTG 60.606 52.381 5.92 0.00 38.79 4.41
2202 4921 1.069049 GGGCAAAGTGTCAAATGCTGT 59.931 47.619 5.92 0.00 38.79 4.40
2203 4922 2.483538 GGGCAAAGTGTCAAATGCTGTT 60.484 45.455 5.92 0.00 38.79 3.16
2204 4923 3.243704 GGGCAAAGTGTCAAATGCTGTTA 60.244 43.478 5.92 0.00 38.79 2.41
2205 4924 3.983344 GGCAAAGTGTCAAATGCTGTTAG 59.017 43.478 5.92 0.00 38.79 2.34
2206 4925 4.499696 GGCAAAGTGTCAAATGCTGTTAGT 60.500 41.667 5.92 0.00 38.79 2.24
2207 4926 5.278266 GGCAAAGTGTCAAATGCTGTTAGTA 60.278 40.000 5.92 0.00 38.79 1.82
2208 4927 6.205784 GCAAAGTGTCAAATGCTGTTAGTAA 58.794 36.000 0.00 0.00 35.93 2.24
2209 4928 6.863126 GCAAAGTGTCAAATGCTGTTAGTAAT 59.137 34.615 0.00 0.00 35.93 1.89
2210 4929 7.148918 GCAAAGTGTCAAATGCTGTTAGTAATG 60.149 37.037 0.00 0.00 35.93 1.90
2211 4930 7.744087 AAGTGTCAAATGCTGTTAGTAATGA 57.256 32.000 0.00 0.00 0.00 2.57
2212 4931 7.928307 AGTGTCAAATGCTGTTAGTAATGAT 57.072 32.000 0.00 0.00 0.00 2.45
2213 4932 8.340618 AGTGTCAAATGCTGTTAGTAATGATT 57.659 30.769 0.00 0.00 0.00 2.57
2214 4933 8.454106 AGTGTCAAATGCTGTTAGTAATGATTC 58.546 33.333 0.00 0.00 0.00 2.52
2215 4934 8.454106 GTGTCAAATGCTGTTAGTAATGATTCT 58.546 33.333 0.00 0.00 0.00 2.40
2216 4935 9.013229 TGTCAAATGCTGTTAGTAATGATTCTT 57.987 29.630 0.00 0.00 0.00 2.52
2217 4936 9.846248 GTCAAATGCTGTTAGTAATGATTCTTT 57.154 29.630 0.00 0.00 0.00 2.52
2222 4941 9.890629 ATGCTGTTAGTAATGATTCTTTAGACA 57.109 29.630 0.00 0.00 0.00 3.41
2223 4942 9.719355 TGCTGTTAGTAATGATTCTTTAGACAA 57.281 29.630 0.00 0.00 0.00 3.18
2233 4952 8.976986 ATGATTCTTTAGACAAAATGCTCAAC 57.023 30.769 0.00 0.00 0.00 3.18
2234 4953 7.077605 TGATTCTTTAGACAAAATGCTCAACG 58.922 34.615 0.00 0.00 0.00 4.10
2235 4954 6.612247 TTCTTTAGACAAAATGCTCAACGA 57.388 33.333 0.00 0.00 0.00 3.85
2236 4955 6.801539 TCTTTAGACAAAATGCTCAACGAT 57.198 33.333 0.00 0.00 0.00 3.73
2237 4956 6.602179 TCTTTAGACAAAATGCTCAACGATG 58.398 36.000 0.00 0.00 0.00 3.84
2238 4957 5.940192 TTAGACAAAATGCTCAACGATGT 57.060 34.783 0.00 0.00 0.00 3.06
2239 4958 7.386573 TCTTTAGACAAAATGCTCAACGATGTA 59.613 33.333 0.00 0.00 0.00 2.29
2240 4959 7.609760 TTAGACAAAATGCTCAACGATGTAT 57.390 32.000 0.00 0.00 0.00 2.29
2241 4960 8.710835 TTAGACAAAATGCTCAACGATGTATA 57.289 30.769 0.00 0.00 0.00 1.47
2242 4961 7.005062 AGACAAAATGCTCAACGATGTATAC 57.995 36.000 0.00 0.00 0.00 1.47
2243 4962 6.037172 AGACAAAATGCTCAACGATGTATACC 59.963 38.462 0.00 0.00 0.00 2.73
2244 4963 5.065988 ACAAAATGCTCAACGATGTATACCC 59.934 40.000 0.00 0.00 0.00 3.69
2245 4964 4.415881 AATGCTCAACGATGTATACCCA 57.584 40.909 0.00 0.00 0.00 4.51
2246 4965 3.897141 TGCTCAACGATGTATACCCAA 57.103 42.857 0.00 0.00 0.00 4.12
2247 4966 4.415881 TGCTCAACGATGTATACCCAAT 57.584 40.909 0.00 0.00 0.00 3.16
2248 4967 4.377021 TGCTCAACGATGTATACCCAATC 58.623 43.478 0.00 0.00 0.00 2.67
2249 4968 4.141824 TGCTCAACGATGTATACCCAATCA 60.142 41.667 0.00 0.00 0.00 2.57
2250 4969 4.449068 GCTCAACGATGTATACCCAATCAG 59.551 45.833 0.00 0.00 0.00 2.90
2251 4970 4.956085 TCAACGATGTATACCCAATCAGG 58.044 43.478 0.00 0.00 37.03 3.86
2261 4980 3.056213 CCAATCAGGGGCAAAGTGT 57.944 52.632 0.00 0.00 0.00 3.55
2262 4981 0.890683 CCAATCAGGGGCAAAGTGTC 59.109 55.000 0.00 0.00 0.00 3.67
2263 4982 1.619654 CAATCAGGGGCAAAGTGTCA 58.380 50.000 0.00 0.00 0.00 3.58
2264 4983 1.962807 CAATCAGGGGCAAAGTGTCAA 59.037 47.619 0.00 0.00 0.00 3.18
2265 4984 2.364970 CAATCAGGGGCAAAGTGTCAAA 59.635 45.455 0.00 0.00 0.00 2.69
2266 4985 2.380064 TCAGGGGCAAAGTGTCAAAT 57.620 45.000 0.00 0.00 0.00 2.32
2267 4986 1.962807 TCAGGGGCAAAGTGTCAAATG 59.037 47.619 0.00 0.00 0.00 2.32
2268 4987 0.681175 AGGGGCAAAGTGTCAAATGC 59.319 50.000 0.00 0.00 38.06 3.56
2269 4988 0.681175 GGGGCAAAGTGTCAAATGCT 59.319 50.000 5.92 0.00 38.79 3.79
2270 4989 1.606224 GGGGCAAAGTGTCAAATGCTG 60.606 52.381 5.92 0.00 38.79 4.41
2271 4990 1.069049 GGGCAAAGTGTCAAATGCTGT 59.931 47.619 5.92 0.00 38.79 4.40
2272 4991 2.483538 GGGCAAAGTGTCAAATGCTGTT 60.484 45.455 5.92 0.00 38.79 3.16
2273 4992 3.243704 GGGCAAAGTGTCAAATGCTGTTA 60.244 43.478 5.92 0.00 38.79 2.41
2274 4993 3.983344 GGCAAAGTGTCAAATGCTGTTAG 59.017 43.478 5.92 0.00 38.79 2.34
2275 4994 4.499696 GGCAAAGTGTCAAATGCTGTTAGT 60.500 41.667 5.92 0.00 38.79 2.24
2276 4995 5.278266 GGCAAAGTGTCAAATGCTGTTAGTA 60.278 40.000 5.92 0.00 38.79 1.82
2277 4996 6.205784 GCAAAGTGTCAAATGCTGTTAGTAA 58.794 36.000 0.00 0.00 35.93 2.24
2278 4997 6.863126 GCAAAGTGTCAAATGCTGTTAGTAAT 59.137 34.615 0.00 0.00 35.93 1.89
2279 4998 7.148918 GCAAAGTGTCAAATGCTGTTAGTAATG 60.149 37.037 0.00 0.00 35.93 1.90
2280 4999 7.744087 AAGTGTCAAATGCTGTTAGTAATGA 57.256 32.000 0.00 0.00 0.00 2.57
2281 5000 7.928307 AGTGTCAAATGCTGTTAGTAATGAT 57.072 32.000 0.00 0.00 0.00 2.45
2282 5001 8.340618 AGTGTCAAATGCTGTTAGTAATGATT 57.659 30.769 0.00 0.00 0.00 2.57
2283 5002 8.454106 AGTGTCAAATGCTGTTAGTAATGATTC 58.546 33.333 0.00 0.00 0.00 2.52
2284 5003 8.454106 GTGTCAAATGCTGTTAGTAATGATTCT 58.546 33.333 0.00 0.00 0.00 2.40
2285 5004 9.013229 TGTCAAATGCTGTTAGTAATGATTCTT 57.987 29.630 0.00 0.00 0.00 2.52
2286 5005 9.846248 GTCAAATGCTGTTAGTAATGATTCTTT 57.154 29.630 0.00 0.00 0.00 2.52
2291 5010 9.890629 ATGCTGTTAGTAATGATTCTTTAGACA 57.109 29.630 0.00 0.00 0.00 3.41
2292 5011 9.719355 TGCTGTTAGTAATGATTCTTTAGACAA 57.281 29.630 0.00 0.00 0.00 3.18
2302 5021 8.976986 ATGATTCTTTAGACAAAATGCTCAAC 57.023 30.769 0.00 0.00 0.00 3.18
2303 5022 7.077605 TGATTCTTTAGACAAAATGCTCAACG 58.922 34.615 0.00 0.00 0.00 4.10
2304 5023 6.612247 TTCTTTAGACAAAATGCTCAACGA 57.388 33.333 0.00 0.00 0.00 3.85
2305 5024 6.801539 TCTTTAGACAAAATGCTCAACGAT 57.198 33.333 0.00 0.00 0.00 3.73
2306 5025 6.602179 TCTTTAGACAAAATGCTCAACGATG 58.398 36.000 0.00 0.00 0.00 3.84
2307 5026 5.940192 TTAGACAAAATGCTCAACGATGT 57.060 34.783 0.00 0.00 0.00 3.06
2308 5027 7.386573 TCTTTAGACAAAATGCTCAACGATGTA 59.613 33.333 0.00 0.00 0.00 2.29
2309 5028 7.609760 TTAGACAAAATGCTCAACGATGTAT 57.390 32.000 0.00 0.00 0.00 2.29
2310 5029 8.710835 TTAGACAAAATGCTCAACGATGTATA 57.289 30.769 0.00 0.00 0.00 1.47
2311 5030 7.005062 AGACAAAATGCTCAACGATGTATAC 57.995 36.000 0.00 0.00 0.00 1.47
2312 5031 6.037172 AGACAAAATGCTCAACGATGTATACC 59.963 38.462 0.00 0.00 0.00 2.73
2313 5032 5.065988 ACAAAATGCTCAACGATGTATACCC 59.934 40.000 0.00 0.00 0.00 3.69
2314 5033 4.415881 AATGCTCAACGATGTATACCCA 57.584 40.909 0.00 0.00 0.00 4.51
2315 5034 3.897141 TGCTCAACGATGTATACCCAA 57.103 42.857 0.00 0.00 0.00 4.12
2398 5121 5.352293 GGCTGATTTATTTTCCCTTTTGCAG 59.648 40.000 0.00 0.00 0.00 4.41
2403 5126 7.656948 TGATTTATTTTCCCTTTTGCAGTTCAG 59.343 33.333 0.00 0.00 0.00 3.02
2440 5164 9.708222 GACTTGCAGTGAGTAATATAAATTGTG 57.292 33.333 0.00 0.00 0.00 3.33
2688 5414 2.787994 ACTTCTGCCATGTTCTTCTGG 58.212 47.619 0.00 0.00 35.53 3.86
2708 5434 1.933853 GCTTTACTGGTCTACGCCATG 59.066 52.381 0.00 0.00 37.96 3.66
2710 5436 3.596214 CTTTACTGGTCTACGCCATGTT 58.404 45.455 0.00 0.00 37.96 2.71
2711 5437 2.665649 TACTGGTCTACGCCATGTTG 57.334 50.000 0.00 0.00 37.96 3.33
2712 5438 0.036388 ACTGGTCTACGCCATGTTGG 60.036 55.000 0.00 0.00 41.55 3.77
2713 5439 0.744414 CTGGTCTACGCCATGTTGGG 60.744 60.000 0.00 0.00 38.19 4.12
2746 5472 4.755266 TTGCCCTCCTGATAGTCTAAAC 57.245 45.455 0.00 0.00 0.00 2.01
2747 5473 3.995636 TGCCCTCCTGATAGTCTAAACT 58.004 45.455 0.00 0.00 39.66 2.66
2750 5476 4.591072 GCCCTCCTGATAGTCTAAACTCAT 59.409 45.833 0.00 0.00 36.92 2.90
2752 5478 6.740122 GCCCTCCTGATAGTCTAAACTCATTC 60.740 46.154 0.00 0.00 36.92 2.67
2755 5481 8.428063 CCTCCTGATAGTCTAAACTCATTCATT 58.572 37.037 0.00 0.00 36.92 2.57
2756 5482 9.474920 CTCCTGATAGTCTAAACTCATTCATTC 57.525 37.037 0.00 0.00 36.92 2.67
2757 5483 9.206690 TCCTGATAGTCTAAACTCATTCATTCT 57.793 33.333 0.00 0.00 36.92 2.40
2758 5484 9.829507 CCTGATAGTCTAAACTCATTCATTCTT 57.170 33.333 0.00 0.00 36.92 2.52
2760 5486 9.823647 TGATAGTCTAAACTCATTCATTCTTCC 57.176 33.333 0.00 0.00 36.92 3.46
2827 5553 2.096248 TGGGTGACACTTGGTTTTGAC 58.904 47.619 5.39 0.00 0.00 3.18
2832 5558 0.375803 ACACTTGGTTTTGACGCGAC 59.624 50.000 15.93 7.62 0.00 5.19
3103 5829 5.476945 ACCAAGAAAATTTAGGGCAGTGTAG 59.523 40.000 0.00 0.00 0.00 2.74
3106 5832 5.887754 AGAAAATTTAGGGCAGTGTAGGAA 58.112 37.500 0.00 0.00 0.00 3.36
3108 5834 6.954102 AGAAAATTTAGGGCAGTGTAGGAATT 59.046 34.615 0.00 0.00 0.00 2.17
3110 5836 7.553504 AAATTTAGGGCAGTGTAGGAATTTT 57.446 32.000 0.00 0.00 0.00 1.82
3154 5884 9.770097 ACTACAATCAATCATACGAATCAGAAT 57.230 29.630 0.00 0.00 0.00 2.40
3273 6004 1.197721 CTGCTTGTCTTGCCCTTTACG 59.802 52.381 0.00 0.00 0.00 3.18
3286 6017 2.316119 CTTTACGAAAGGTGCAGCAC 57.684 50.000 17.97 17.97 34.85 4.40
3292 6023 1.495584 GAAAGGTGCAGCACGTTCGA 61.496 55.000 28.79 0.00 40.76 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.500892 ACGATCAACCAGGTAAAAATATGCATA 59.499 33.333 9.27 9.27 0.00 3.14
48 49 1.899814 AGAGCAACGATCAACCAGGTA 59.100 47.619 0.00 0.00 0.00 3.08
64 65 4.584325 TGAAAACCATATTGCCCATAGAGC 59.416 41.667 0.00 0.00 0.00 4.09
93 94 0.454600 TATCGTCGTGGACTGCCTTC 59.545 55.000 0.00 0.00 34.31 3.46
100 101 2.615447 TCTGGTGTATATCGTCGTGGAC 59.385 50.000 0.00 0.00 0.00 4.02
108 109 6.516718 AGAAATTGGACTCTGGTGTATATCG 58.483 40.000 0.00 0.00 0.00 2.92
117 118 5.933617 TGATGGATAGAAATTGGACTCTGG 58.066 41.667 0.00 0.00 0.00 3.86
124 125 9.090692 GTTGACAAAATGATGGATAGAAATTGG 57.909 33.333 0.00 0.00 0.00 3.16
125 126 9.865321 AGTTGACAAAATGATGGATAGAAATTG 57.135 29.630 0.00 0.00 0.00 2.32
135 136 7.062605 GCAATGTAAGAGTTGACAAAATGATGG 59.937 37.037 0.00 0.00 0.00 3.51
162 163 4.346129 GGACTTGAATTGCATTTAGCTCG 58.654 43.478 0.00 0.00 45.94 5.03
174 175 3.092301 GCTAGCCTTTGGGACTTGAATT 58.908 45.455 2.29 0.00 33.58 2.17
182 183 1.382629 GGTTGGCTAGCCTTTGGGA 59.617 57.895 33.07 10.39 36.94 4.37
198 199 5.362717 TCTGGTATCATGAACTTGTATCGGT 59.637 40.000 0.00 0.00 0.00 4.69
220 221 1.181786 CGAGGAAGCCAGTTCTCTCT 58.818 55.000 0.00 0.00 35.25 3.10
228 229 0.321671 TTTGTCTCCGAGGAAGCCAG 59.678 55.000 0.00 0.00 0.00 4.85
239 240 6.748198 TGTTATTTTTCACGTTGTTTGTCTCC 59.252 34.615 0.00 0.00 0.00 3.71
240 241 7.728580 TGTTATTTTTCACGTTGTTTGTCTC 57.271 32.000 0.00 0.00 0.00 3.36
241 242 9.445786 CTATGTTATTTTTCACGTTGTTTGTCT 57.554 29.630 0.00 0.00 0.00 3.41
247 249 8.330466 TCCATCTATGTTATTTTTCACGTTGT 57.670 30.769 0.00 0.00 0.00 3.32
253 255 9.241919 TGAAAGCTCCATCTATGTTATTTTTCA 57.758 29.630 0.00 0.00 0.00 2.69
259 261 8.435187 TCTGATTGAAAGCTCCATCTATGTTAT 58.565 33.333 0.00 0.00 0.00 1.89
369 374 1.794714 TCTAGGCTTGATGGGTCCTC 58.205 55.000 0.00 0.00 0.00 3.71
428 433 5.017490 TCGTATTCTTGAGAGAGGGAAAGT 58.983 41.667 0.00 0.00 32.44 2.66
449 456 4.392754 TCATTCATCACAACCTGACAATCG 59.607 41.667 0.00 0.00 0.00 3.34
476 494 2.325082 CCCGGTTGAACCTTGCTCG 61.325 63.158 13.18 0.00 35.66 5.03
506 524 5.352569 ACGCTCCTTTATTTCTCTGATGTTG 59.647 40.000 0.00 0.00 0.00 3.33
508 526 5.091261 ACGCTCCTTTATTTCTCTGATGT 57.909 39.130 0.00 0.00 0.00 3.06
545 602 9.350357 CTACGCTCATAAACTGACTTAAACTTA 57.650 33.333 0.00 0.00 0.00 2.24
550 607 8.086522 AGTTTCTACGCTCATAAACTGACTTAA 58.913 33.333 0.00 0.00 39.89 1.85
554 611 6.707599 AAGTTTCTACGCTCATAAACTGAC 57.292 37.500 0.00 0.00 40.35 3.51
556 613 8.240883 ACTAAAGTTTCTACGCTCATAAACTG 57.759 34.615 0.00 0.00 40.35 3.16
600 657 5.065988 CACCTAAAGTAACAGTGTGCTTTGT 59.934 40.000 24.59 16.78 33.78 2.83
616 673 5.705609 AACATGCCTACAAACACCTAAAG 57.294 39.130 0.00 0.00 0.00 1.85
627 684 0.611618 CCCAGCCAAACATGCCTACA 60.612 55.000 0.00 0.00 0.00 2.74
672 729 5.400066 ACCCCATAAACAATGCTTACAAC 57.600 39.130 0.00 0.00 33.92 3.32
673 730 6.097554 CCATACCCCATAAACAATGCTTACAA 59.902 38.462 0.00 0.00 33.92 2.41
679 736 2.965147 AGCCATACCCCATAAACAATGC 59.035 45.455 0.00 0.00 33.92 3.56
688 745 2.440494 ATGACCTAGCCATACCCCAT 57.560 50.000 0.00 0.00 0.00 4.00
689 746 2.181419 ACTATGACCTAGCCATACCCCA 59.819 50.000 0.58 0.00 0.00 4.96
690 747 2.832733 GACTATGACCTAGCCATACCCC 59.167 54.545 0.58 0.00 0.00 4.95
691 748 2.492484 CGACTATGACCTAGCCATACCC 59.508 54.545 0.58 0.00 0.00 3.69
692 749 3.190953 GTCGACTATGACCTAGCCATACC 59.809 52.174 8.70 0.00 32.61 2.73
693 750 4.073549 AGTCGACTATGACCTAGCCATAC 58.926 47.826 18.46 0.00 39.77 2.39
694 751 4.072839 CAGTCGACTATGACCTAGCCATA 58.927 47.826 19.57 3.91 39.77 2.74
695 752 2.887783 CAGTCGACTATGACCTAGCCAT 59.112 50.000 19.57 2.19 39.77 4.40
696 753 2.092592 TCAGTCGACTATGACCTAGCCA 60.093 50.000 19.57 0.00 39.77 4.75
697 754 2.550606 CTCAGTCGACTATGACCTAGCC 59.449 54.545 19.57 0.00 39.77 3.93
698 755 3.468770 TCTCAGTCGACTATGACCTAGC 58.531 50.000 19.57 0.00 39.77 3.42
699 756 6.627395 AAATCTCAGTCGACTATGACCTAG 57.373 41.667 19.57 3.12 39.77 3.02
700 757 7.013083 GGTTAAATCTCAGTCGACTATGACCTA 59.987 40.741 19.57 10.70 39.77 3.08
701 758 6.183360 GGTTAAATCTCAGTCGACTATGACCT 60.183 42.308 19.57 11.58 39.77 3.85
702 759 5.978322 GGTTAAATCTCAGTCGACTATGACC 59.022 44.000 19.57 13.02 39.77 4.02
703 760 6.561614 TGGTTAAATCTCAGTCGACTATGAC 58.438 40.000 19.57 8.35 39.21 3.06
704 761 6.769134 TGGTTAAATCTCAGTCGACTATGA 57.231 37.500 19.57 18.60 0.00 2.15
705 762 7.036220 ACTTGGTTAAATCTCAGTCGACTATG 58.964 38.462 19.57 13.78 0.00 2.23
706 763 7.122948 AGACTTGGTTAAATCTCAGTCGACTAT 59.877 37.037 19.57 5.53 0.00 2.12
707 764 6.433404 AGACTTGGTTAAATCTCAGTCGACTA 59.567 38.462 19.57 2.81 0.00 2.59
708 765 5.244178 AGACTTGGTTAAATCTCAGTCGACT 59.756 40.000 13.58 13.58 0.00 4.18
709 766 5.471257 AGACTTGGTTAAATCTCAGTCGAC 58.529 41.667 7.70 7.70 0.00 4.20
710 767 5.723672 AGACTTGGTTAAATCTCAGTCGA 57.276 39.130 0.00 0.00 0.00 4.20
711 768 7.091443 ACTAAGACTTGGTTAAATCTCAGTCG 58.909 38.462 0.00 0.00 0.00 4.18
712 769 8.088981 TGACTAAGACTTGGTTAAATCTCAGTC 58.911 37.037 5.60 3.04 0.00 3.51
713 770 7.963532 TGACTAAGACTTGGTTAAATCTCAGT 58.036 34.615 5.60 0.00 0.00 3.41
714 771 8.833231 TTGACTAAGACTTGGTTAAATCTCAG 57.167 34.615 5.60 0.00 0.00 3.35
715 772 8.429641 ACTTGACTAAGACTTGGTTAAATCTCA 58.570 33.333 5.60 0.00 37.36 3.27
716 773 8.713271 CACTTGACTAAGACTTGGTTAAATCTC 58.287 37.037 5.60 0.00 37.36 2.75
717 774 8.429641 TCACTTGACTAAGACTTGGTTAAATCT 58.570 33.333 5.60 0.00 37.36 2.40
718 775 8.496751 GTCACTTGACTAAGACTTGGTTAAATC 58.503 37.037 5.60 0.00 41.65 2.17
719 776 7.990886 TGTCACTTGACTAAGACTTGGTTAAAT 59.009 33.333 5.60 0.00 44.99 1.40
720 777 7.332557 TGTCACTTGACTAAGACTTGGTTAAA 58.667 34.615 5.60 3.65 44.99 1.52
721 778 6.880484 TGTCACTTGACTAAGACTTGGTTAA 58.120 36.000 5.60 7.15 44.99 2.01
722 779 6.474140 TGTCACTTGACTAAGACTTGGTTA 57.526 37.500 5.60 0.00 44.99 2.85
723 780 5.353394 TGTCACTTGACTAAGACTTGGTT 57.647 39.130 5.60 0.00 44.99 3.67
724 781 5.552870 ATGTCACTTGACTAAGACTTGGT 57.447 39.130 3.54 3.54 44.99 3.67
725 782 6.455647 TGTATGTCACTTGACTAAGACTTGG 58.544 40.000 10.63 0.00 44.99 3.61
726 783 7.600375 ACATGTATGTCACTTGACTAAGACTTG 59.400 37.037 10.63 9.01 44.99 3.16
727 784 7.671302 ACATGTATGTCACTTGACTAAGACTT 58.329 34.615 10.63 0.00 44.99 3.01
728 785 7.233389 ACATGTATGTCACTTGACTAAGACT 57.767 36.000 10.63 0.00 44.99 3.24
729 786 8.981724 TTACATGTATGTCACTTGACTAAGAC 57.018 34.615 6.36 0.09 44.99 3.01
730 787 9.020731 TCTTACATGTATGTCACTTGACTAAGA 57.979 33.333 16.01 9.85 44.99 2.10
731 788 9.639601 TTCTTACATGTATGTCACTTGACTAAG 57.360 33.333 16.01 8.01 44.99 2.18
732 789 9.990360 TTTCTTACATGTATGTCACTTGACTAA 57.010 29.630 16.01 0.00 44.99 2.24
733 790 9.639601 CTTTCTTACATGTATGTCACTTGACTA 57.360 33.333 16.01 0.00 44.99 2.59
734 791 8.367911 TCTTTCTTACATGTATGTCACTTGACT 58.632 33.333 16.01 0.00 44.99 3.41
735 792 8.534333 TCTTTCTTACATGTATGTCACTTGAC 57.466 34.615 16.01 2.19 44.97 3.18
736 793 9.554395 TTTCTTTCTTACATGTATGTCACTTGA 57.446 29.630 16.01 6.94 41.97 3.02
769 826 4.789012 ACATTGAGATCCGTGCATTTTT 57.211 36.364 0.00 0.00 0.00 1.94
770 827 5.647658 TCTTACATTGAGATCCGTGCATTTT 59.352 36.000 0.00 0.00 0.00 1.82
771 828 5.185454 TCTTACATTGAGATCCGTGCATTT 58.815 37.500 0.00 0.00 0.00 2.32
772 829 4.769688 TCTTACATTGAGATCCGTGCATT 58.230 39.130 0.00 0.00 0.00 3.56
773 830 4.406648 TCTTACATTGAGATCCGTGCAT 57.593 40.909 0.00 0.00 0.00 3.96
774 831 3.885724 TCTTACATTGAGATCCGTGCA 57.114 42.857 0.00 0.00 0.00 4.57
775 832 4.626042 AGATCTTACATTGAGATCCGTGC 58.374 43.478 9.76 0.00 46.88 5.34
776 833 5.689514 GTGAGATCTTACATTGAGATCCGTG 59.310 44.000 12.50 0.00 46.88 4.94
777 834 5.506483 CGTGAGATCTTACATTGAGATCCGT 60.506 44.000 16.95 0.00 46.88 4.69
778 835 4.914504 CGTGAGATCTTACATTGAGATCCG 59.085 45.833 16.95 4.39 46.88 4.18
779 836 6.078202 TCGTGAGATCTTACATTGAGATCC 57.922 41.667 16.95 4.01 46.88 3.36
780 837 9.853555 ATATTCGTGAGATCTTACATTGAGATC 57.146 33.333 16.95 6.09 46.32 2.75
788 845 9.649167 TCGATACTATATTCGTGAGATCTTACA 57.351 33.333 16.95 0.00 41.60 2.41
789 846 9.904647 GTCGATACTATATTCGTGAGATCTTAC 57.095 37.037 7.56 7.56 41.60 2.34
790 847 9.872721 AGTCGATACTATATTCGTGAGATCTTA 57.127 33.333 0.00 0.00 34.98 2.10
791 848 8.661257 CAGTCGATACTATATTCGTGAGATCTT 58.339 37.037 0.00 0.00 35.24 2.40
792 849 8.035984 TCAGTCGATACTATATTCGTGAGATCT 58.964 37.037 0.00 0.00 35.24 2.75
793 850 8.187354 TCAGTCGATACTATATTCGTGAGATC 57.813 38.462 0.00 0.00 35.24 2.75
794 851 8.035984 TCTCAGTCGATACTATATTCGTGAGAT 58.964 37.037 11.10 0.00 40.00 2.75
795 852 7.328982 GTCTCAGTCGATACTATATTCGTGAGA 59.671 40.741 11.10 11.10 41.33 3.27
796 853 7.116519 TGTCTCAGTCGATACTATATTCGTGAG 59.883 40.741 8.03 8.03 38.66 3.51
797 854 6.927381 TGTCTCAGTCGATACTATATTCGTGA 59.073 38.462 0.00 0.00 36.74 4.35
798 855 7.118422 TGTCTCAGTCGATACTATATTCGTG 57.882 40.000 0.00 0.00 36.74 4.35
799 856 7.908827 ATGTCTCAGTCGATACTATATTCGT 57.091 36.000 0.00 0.00 36.74 3.85
800 857 9.691795 GTTATGTCTCAGTCGATACTATATTCG 57.308 37.037 0.00 0.00 33.48 3.34
805 862 8.904834 ACTTTGTTATGTCTCAGTCGATACTAT 58.095 33.333 0.00 0.00 33.48 2.12
806 863 8.277490 ACTTTGTTATGTCTCAGTCGATACTA 57.723 34.615 0.00 0.00 33.48 1.82
807 864 7.121463 AGACTTTGTTATGTCTCAGTCGATACT 59.879 37.037 0.00 0.00 39.04 2.12
808 865 7.251994 AGACTTTGTTATGTCTCAGTCGATAC 58.748 38.462 0.00 0.00 39.04 2.24
809 866 7.392494 AGACTTTGTTATGTCTCAGTCGATA 57.608 36.000 0.00 0.00 39.04 2.92
810 867 6.274157 AGACTTTGTTATGTCTCAGTCGAT 57.726 37.500 0.00 0.00 39.04 3.59
811 868 5.707242 AGACTTTGTTATGTCTCAGTCGA 57.293 39.130 0.00 0.00 39.04 4.20
818 875 5.462405 GTCGACTGAGACTTTGTTATGTCT 58.538 41.667 8.70 0.00 45.06 3.41
819 876 5.748872 GTCGACTGAGACTTTGTTATGTC 57.251 43.478 8.70 0.00 38.09 3.06
830 887 4.142578 TGCTGAATCTTAGTCGACTGAGAC 60.143 45.833 34.32 24.87 40.68 3.36
831 888 4.010349 TGCTGAATCTTAGTCGACTGAGA 58.990 43.478 33.88 33.88 41.83 3.27
832 889 4.362932 TGCTGAATCTTAGTCGACTGAG 57.637 45.455 26.80 26.80 0.00 3.35
833 890 4.459337 TCTTGCTGAATCTTAGTCGACTGA 59.541 41.667 28.12 19.13 0.00 3.41
834 891 4.560819 GTCTTGCTGAATCTTAGTCGACTG 59.439 45.833 28.12 12.46 0.00 3.51
835 892 4.461081 AGTCTTGCTGAATCTTAGTCGACT 59.539 41.667 23.66 23.66 0.00 4.18
836 893 4.739195 AGTCTTGCTGAATCTTAGTCGAC 58.261 43.478 7.70 7.70 0.00 4.20
850 907 7.986085 ATTACTCATAAACAACAGTCTTGCT 57.014 32.000 0.00 0.00 0.00 3.91
942 2811 1.211949 GCAGTCCATGGGCCTTAACTA 59.788 52.381 14.18 0.00 0.00 2.24
961 2830 0.811281 ATTGCTAGCGGGTTGAAAGC 59.189 50.000 10.77 0.00 0.00 3.51
968 2837 0.178068 AATGTCGATTGCTAGCGGGT 59.822 50.000 10.77 0.00 33.13 5.28
998 2875 1.457346 GGCCAAGACAGAAGACATGG 58.543 55.000 0.00 0.00 0.00 3.66
1061 2938 2.685017 TCCTGTGCTCCATCGCCT 60.685 61.111 0.00 0.00 0.00 5.52
1449 3681 0.833949 AAGCTTCGGAATCTCCTCCC 59.166 55.000 0.00 0.00 33.30 4.30
1693 4392 7.012138 CAGATCCTTCAGACAATAACAATCAGG 59.988 40.741 0.00 0.00 0.00 3.86
1745 4447 1.721487 CCGCGGATGCCTACAAAAG 59.279 57.895 24.07 0.00 38.08 2.27
1873 4577 0.952010 CCAGCAAAATGGCAAGGCAC 60.952 55.000 0.00 0.00 35.83 5.01
1898 4608 9.499479 GGATAATAAGCATCTCAAAGATCAAGA 57.501 33.333 0.00 0.00 31.32 3.02
1929 4639 3.421394 TGGAACTCCTCCCTCACATAT 57.579 47.619 0.00 0.00 44.69 1.78
1952 4671 4.273318 ACAGAAAGCTTCAAAGACCAACT 58.727 39.130 0.00 0.00 0.00 3.16
1953 4672 4.639135 ACAGAAAGCTTCAAAGACCAAC 57.361 40.909 0.00 0.00 0.00 3.77
1969 4688 9.403583 ACTACTGAAATGGTTTTCTTAACAGAA 57.596 29.630 0.00 0.00 41.54 3.02
2030 4749 4.634004 TGATGATTCACACGAATTACACCC 59.366 41.667 0.00 0.00 42.06 4.61
2096 4815 4.082845 TCTTTCTCTCCTGATTCAGACGT 58.917 43.478 15.36 0.00 32.44 4.34
2183 4902 2.514205 ACAGCATTTGACACTTTGCC 57.486 45.000 0.00 0.00 35.71 4.52
2185 4904 8.075574 TCATTACTAACAGCATTTGACACTTTG 58.924 33.333 0.00 0.00 0.00 2.77
2186 4905 8.165239 TCATTACTAACAGCATTTGACACTTT 57.835 30.769 0.00 0.00 0.00 2.66
2187 4906 7.744087 TCATTACTAACAGCATTTGACACTT 57.256 32.000 0.00 0.00 0.00 3.16
2188 4907 7.928307 ATCATTACTAACAGCATTTGACACT 57.072 32.000 0.00 0.00 0.00 3.55
2189 4908 8.454106 AGAATCATTACTAACAGCATTTGACAC 58.546 33.333 0.00 0.00 0.00 3.67
2190 4909 8.565896 AGAATCATTACTAACAGCATTTGACA 57.434 30.769 0.00 0.00 0.00 3.58
2191 4910 9.846248 AAAGAATCATTACTAACAGCATTTGAC 57.154 29.630 0.00 0.00 0.00 3.18
2196 4915 9.890629 TGTCTAAAGAATCATTACTAACAGCAT 57.109 29.630 0.00 0.00 0.00 3.79
2197 4916 9.719355 TTGTCTAAAGAATCATTACTAACAGCA 57.281 29.630 0.00 0.00 0.00 4.41
2207 4926 9.415544 GTTGAGCATTTTGTCTAAAGAATCATT 57.584 29.630 0.00 0.00 0.00 2.57
2208 4927 7.752239 CGTTGAGCATTTTGTCTAAAGAATCAT 59.248 33.333 0.00 0.00 0.00 2.45
2209 4928 7.041440 TCGTTGAGCATTTTGTCTAAAGAATCA 60.041 33.333 0.00 0.00 0.00 2.57
2210 4929 7.298122 TCGTTGAGCATTTTGTCTAAAGAATC 58.702 34.615 0.00 0.00 0.00 2.52
2211 4930 7.202016 TCGTTGAGCATTTTGTCTAAAGAAT 57.798 32.000 0.00 0.00 0.00 2.40
2212 4931 6.612247 TCGTTGAGCATTTTGTCTAAAGAA 57.388 33.333 0.00 0.00 0.00 2.52
2213 4932 6.204688 ACATCGTTGAGCATTTTGTCTAAAGA 59.795 34.615 0.00 0.00 0.00 2.52
2214 4933 6.373779 ACATCGTTGAGCATTTTGTCTAAAG 58.626 36.000 0.00 0.00 0.00 1.85
2215 4934 6.312399 ACATCGTTGAGCATTTTGTCTAAA 57.688 33.333 0.00 0.00 0.00 1.85
2216 4935 5.940192 ACATCGTTGAGCATTTTGTCTAA 57.060 34.783 0.00 0.00 0.00 2.10
2217 4936 7.223971 GGTATACATCGTTGAGCATTTTGTCTA 59.776 37.037 5.01 0.00 0.00 2.59
2218 4937 6.037172 GGTATACATCGTTGAGCATTTTGTCT 59.963 38.462 5.01 0.00 0.00 3.41
2219 4938 6.192360 GGTATACATCGTTGAGCATTTTGTC 58.808 40.000 5.01 0.00 0.00 3.18
2220 4939 5.065988 GGGTATACATCGTTGAGCATTTTGT 59.934 40.000 5.01 0.00 0.00 2.83
2221 4940 5.065859 TGGGTATACATCGTTGAGCATTTTG 59.934 40.000 5.01 0.00 0.00 2.44
2222 4941 5.189928 TGGGTATACATCGTTGAGCATTTT 58.810 37.500 5.01 0.00 0.00 1.82
2223 4942 4.776349 TGGGTATACATCGTTGAGCATTT 58.224 39.130 5.01 0.00 0.00 2.32
2224 4943 4.415881 TGGGTATACATCGTTGAGCATT 57.584 40.909 5.01 0.00 0.00 3.56
2225 4944 4.415881 TTGGGTATACATCGTTGAGCAT 57.584 40.909 5.01 0.00 0.00 3.79
2226 4945 3.897141 TTGGGTATACATCGTTGAGCA 57.103 42.857 5.01 0.00 0.00 4.26
2227 4946 4.377021 TGATTGGGTATACATCGTTGAGC 58.623 43.478 5.01 0.00 0.00 4.26
2228 4947 4.991056 CCTGATTGGGTATACATCGTTGAG 59.009 45.833 5.01 0.00 0.00 3.02
2229 4948 4.956085 CCTGATTGGGTATACATCGTTGA 58.044 43.478 5.01 0.00 0.00 3.18
2243 4962 0.890683 GACACTTTGCCCCTGATTGG 59.109 55.000 0.00 0.00 0.00 3.16
2244 4963 1.619654 TGACACTTTGCCCCTGATTG 58.380 50.000 0.00 0.00 0.00 2.67
2245 4964 2.380064 TTGACACTTTGCCCCTGATT 57.620 45.000 0.00 0.00 0.00 2.57
2246 4965 2.380064 TTTGACACTTTGCCCCTGAT 57.620 45.000 0.00 0.00 0.00 2.90
2247 4966 1.962807 CATTTGACACTTTGCCCCTGA 59.037 47.619 0.00 0.00 0.00 3.86
2248 4967 1.606224 GCATTTGACACTTTGCCCCTG 60.606 52.381 0.00 0.00 0.00 4.45
2249 4968 0.681175 GCATTTGACACTTTGCCCCT 59.319 50.000 0.00 0.00 0.00 4.79
2250 4969 0.681175 AGCATTTGACACTTTGCCCC 59.319 50.000 0.00 0.00 35.71 5.80
2251 4970 1.069049 ACAGCATTTGACACTTTGCCC 59.931 47.619 0.00 0.00 35.71 5.36
2252 4971 2.514205 ACAGCATTTGACACTTTGCC 57.486 45.000 0.00 0.00 35.71 4.52
2253 4972 4.610945 ACTAACAGCATTTGACACTTTGC 58.389 39.130 0.00 0.00 35.34 3.68
2254 4973 8.075574 TCATTACTAACAGCATTTGACACTTTG 58.924 33.333 0.00 0.00 0.00 2.77
2255 4974 8.165239 TCATTACTAACAGCATTTGACACTTT 57.835 30.769 0.00 0.00 0.00 2.66
2256 4975 7.744087 TCATTACTAACAGCATTTGACACTT 57.256 32.000 0.00 0.00 0.00 3.16
2257 4976 7.928307 ATCATTACTAACAGCATTTGACACT 57.072 32.000 0.00 0.00 0.00 3.55
2258 4977 8.454106 AGAATCATTACTAACAGCATTTGACAC 58.546 33.333 0.00 0.00 0.00 3.67
2259 4978 8.565896 AGAATCATTACTAACAGCATTTGACA 57.434 30.769 0.00 0.00 0.00 3.58
2260 4979 9.846248 AAAGAATCATTACTAACAGCATTTGAC 57.154 29.630 0.00 0.00 0.00 3.18
2265 4984 9.890629 TGTCTAAAGAATCATTACTAACAGCAT 57.109 29.630 0.00 0.00 0.00 3.79
2266 4985 9.719355 TTGTCTAAAGAATCATTACTAACAGCA 57.281 29.630 0.00 0.00 0.00 4.41
2276 4995 9.415544 GTTGAGCATTTTGTCTAAAGAATCATT 57.584 29.630 0.00 0.00 0.00 2.57
2277 4996 7.752239 CGTTGAGCATTTTGTCTAAAGAATCAT 59.248 33.333 0.00 0.00 0.00 2.45
2278 4997 7.041440 TCGTTGAGCATTTTGTCTAAAGAATCA 60.041 33.333 0.00 0.00 0.00 2.57
2279 4998 7.298122 TCGTTGAGCATTTTGTCTAAAGAATC 58.702 34.615 0.00 0.00 0.00 2.52
2280 4999 7.202016 TCGTTGAGCATTTTGTCTAAAGAAT 57.798 32.000 0.00 0.00 0.00 2.40
2281 5000 6.612247 TCGTTGAGCATTTTGTCTAAAGAA 57.388 33.333 0.00 0.00 0.00 2.52
2282 5001 6.204688 ACATCGTTGAGCATTTTGTCTAAAGA 59.795 34.615 0.00 0.00 0.00 2.52
2283 5002 6.373779 ACATCGTTGAGCATTTTGTCTAAAG 58.626 36.000 0.00 0.00 0.00 1.85
2284 5003 6.312399 ACATCGTTGAGCATTTTGTCTAAA 57.688 33.333 0.00 0.00 0.00 1.85
2285 5004 5.940192 ACATCGTTGAGCATTTTGTCTAA 57.060 34.783 0.00 0.00 0.00 2.10
2286 5005 7.223971 GGTATACATCGTTGAGCATTTTGTCTA 59.776 37.037 5.01 0.00 0.00 2.59
2287 5006 6.037172 GGTATACATCGTTGAGCATTTTGTCT 59.963 38.462 5.01 0.00 0.00 3.41
2288 5007 6.192360 GGTATACATCGTTGAGCATTTTGTC 58.808 40.000 5.01 0.00 0.00 3.18
2289 5008 5.065988 GGGTATACATCGTTGAGCATTTTGT 59.934 40.000 5.01 0.00 0.00 2.83
2290 5009 5.065859 TGGGTATACATCGTTGAGCATTTTG 59.934 40.000 5.01 0.00 0.00 2.44
2291 5010 5.189928 TGGGTATACATCGTTGAGCATTTT 58.810 37.500 5.01 0.00 0.00 1.82
2292 5011 4.776349 TGGGTATACATCGTTGAGCATTT 58.224 39.130 5.01 0.00 0.00 2.32
2293 5012 4.415881 TGGGTATACATCGTTGAGCATT 57.584 40.909 5.01 0.00 0.00 3.56
2294 5013 4.415881 TTGGGTATACATCGTTGAGCAT 57.584 40.909 5.01 0.00 0.00 3.79
2295 5014 3.897141 TTGGGTATACATCGTTGAGCA 57.103 42.857 5.01 0.00 0.00 4.26
2296 5015 4.377021 TGATTGGGTATACATCGTTGAGC 58.623 43.478 5.01 0.00 0.00 4.26
2297 5016 4.991056 CCTGATTGGGTATACATCGTTGAG 59.009 45.833 5.01 0.00 0.00 3.02
2298 5017 4.956085 CCTGATTGGGTATACATCGTTGA 58.044 43.478 5.01 0.00 0.00 3.18
2312 5031 0.890683 GACACTTTGCCCCTGATTGG 59.109 55.000 0.00 0.00 0.00 3.16
2313 5032 1.619654 TGACACTTTGCCCCTGATTG 58.380 50.000 0.00 0.00 0.00 2.67
2314 5033 2.380064 TTGACACTTTGCCCCTGATT 57.620 45.000 0.00 0.00 0.00 2.57
2315 5034 2.380064 TTTGACACTTTGCCCCTGAT 57.620 45.000 0.00 0.00 0.00 2.90
2398 5121 2.475200 AGTCTGCAAAAACGCTGAAC 57.525 45.000 0.00 0.00 40.88 3.18
2433 5157 6.815089 TGCAAAAGATGGTTAGACACAATTT 58.185 32.000 0.00 0.00 0.00 1.82
2440 5164 2.164422 GCCCTGCAAAAGATGGTTAGAC 59.836 50.000 0.00 0.00 0.00 2.59
2688 5414 1.933853 CATGGCGTAGACCAGTAAAGC 59.066 52.381 0.00 0.00 44.71 3.51
2746 5472 4.008330 AGTGTGCAGGAAGAATGAATGAG 58.992 43.478 0.00 0.00 0.00 2.90
2747 5473 3.754850 CAGTGTGCAGGAAGAATGAATGA 59.245 43.478 0.00 0.00 0.00 2.57
2750 5476 3.213206 ACAGTGTGCAGGAAGAATGAA 57.787 42.857 0.00 0.00 0.00 2.57
2752 5478 5.413833 AGAATAACAGTGTGCAGGAAGAATG 59.586 40.000 0.00 0.00 0.00 2.67
2755 5481 4.563580 GGAGAATAACAGTGTGCAGGAAGA 60.564 45.833 0.00 0.00 0.00 2.87
2756 5482 3.686726 GGAGAATAACAGTGTGCAGGAAG 59.313 47.826 0.00 0.00 0.00 3.46
2757 5483 3.327757 AGGAGAATAACAGTGTGCAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
2758 5484 2.906389 AGGAGAATAACAGTGTGCAGGA 59.094 45.455 0.00 0.00 0.00 3.86
2759 5485 3.055530 AGAGGAGAATAACAGTGTGCAGG 60.056 47.826 0.00 0.00 0.00 4.85
2760 5486 4.081752 AGAGAGGAGAATAACAGTGTGCAG 60.082 45.833 0.00 0.00 0.00 4.41
2761 5487 3.834813 AGAGAGGAGAATAACAGTGTGCA 59.165 43.478 0.00 0.00 0.00 4.57
2819 5545 1.418755 GATCCGTCGCGTCAAAACC 59.581 57.895 5.77 0.00 0.00 3.27
2832 5558 3.487202 CAACCGGTGTGCGATCCG 61.487 66.667 8.52 6.34 45.42 4.18
2846 5572 2.514205 ACTTCAACAATGGCAGCAAC 57.486 45.000 0.00 0.00 0.00 4.17
3144 5874 9.469807 AATGCTAAGTCTAACTATTCTGATTCG 57.530 33.333 0.00 0.00 0.00 3.34
3149 5879 7.493971 ACTGCAATGCTAAGTCTAACTATTCTG 59.506 37.037 6.82 0.00 0.00 3.02
3154 5884 8.311836 AGTTAACTGCAATGCTAAGTCTAACTA 58.688 33.333 19.12 2.80 32.41 2.24
3273 6004 1.082756 CGAACGTGCTGCACCTTTC 60.083 57.895 25.61 23.85 0.00 2.62
3286 6017 6.203647 ACCAAAATAAGTTTCCTTTCGAACG 58.796 36.000 0.00 0.00 31.89 3.95
3292 6023 5.599242 TCCGGAACCAAAATAAGTTTCCTTT 59.401 36.000 0.00 0.00 31.89 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.