Multiple sequence alignment - TraesCS7D01G336100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G336100 chr7D 100.000 6183 0 0 1 6183 428028741 428022559 0.000000e+00 11418
1 TraesCS7D01G336100 chr7D 80.889 225 33 6 3939 4155 99616071 99616293 1.070000e-37 169
2 TraesCS7D01G336100 chr7B 92.701 5576 232 69 16 5503 445667264 445661776 0.000000e+00 7880
3 TraesCS7D01G336100 chr7B 90.909 781 63 6 3158 3938 301759584 301758812 0.000000e+00 1042
4 TraesCS7D01G336100 chr7B 85.502 269 23 12 5684 5938 445661555 445661289 3.670000e-67 267
5 TraesCS7D01G336100 chr7B 93.865 163 7 2 5933 6095 445661253 445661094 6.190000e-60 243
6 TraesCS7D01G336100 chr7B 90.683 161 14 1 2986 3145 445663149 445663309 4.860000e-51 213
7 TraesCS7D01G336100 chr7B 92.800 125 8 1 5553 5676 445661759 445661635 4.920000e-41 180
8 TraesCS7D01G336100 chr6B 88.227 1376 109 27 4165 5508 140846304 140847658 0.000000e+00 1594
9 TraesCS7D01G336100 chr6B 91.784 779 49 9 3155 3931 475702157 475701392 0.000000e+00 1070
10 TraesCS7D01G336100 chr6B 89.144 654 49 8 615 1256 140843674 140844317 0.000000e+00 795
11 TraesCS7D01G336100 chr6B 85.872 545 46 20 1420 1937 140844324 140844864 9.060000e-153 551
12 TraesCS7D01G336100 chr6B 87.037 486 43 14 1420 1889 219670428 219670909 1.180000e-146 531
13 TraesCS7D01G336100 chr6B 81.974 233 31 5 3935 4156 17007099 17007331 2.940000e-43 187
14 TraesCS7D01G336100 chr6B 86.364 176 19 5 2981 3154 17007317 17007145 2.940000e-43 187
15 TraesCS7D01G336100 chr6B 82.447 188 23 2 3936 4113 21125867 21126054 8.300000e-34 156
16 TraesCS7D01G336100 chr6D 88.006 1384 111 33 4157 5508 65755573 65756933 0.000000e+00 1585
17 TraesCS7D01G336100 chr6D 92.497 773 48 5 3155 3926 296696023 296696786 0.000000e+00 1098
18 TraesCS7D01G336100 chr6D 90.459 566 34 9 621 1174 65753174 65753731 0.000000e+00 728
19 TraesCS7D01G336100 chr6D 86.148 527 60 9 1420 1937 65753788 65754310 1.950000e-154 556
20 TraesCS7D01G336100 chr6D 80.342 468 49 24 2372 2813 65754762 65755212 1.290000e-81 315
21 TraesCS7D01G336100 chr6D 87.059 170 21 1 2981 3150 283554002 283554170 2.270000e-44 191
22 TraesCS7D01G336100 chr6D 83.439 157 21 3 3985 4136 394128187 394128343 2.320000e-29 141
23 TraesCS7D01G336100 chr6A 88.565 1268 92 26 4157 5393 82106755 82105510 0.000000e+00 1489
24 TraesCS7D01G336100 chr6A 86.917 665 54 11 625 1262 82109683 82109025 0.000000e+00 715
25 TraesCS7D01G336100 chr6A 78.812 623 78 31 2372 2961 82107353 82106752 2.720000e-98 370
26 TraesCS7D01G336100 chr6A 87.879 165 20 0 2981 3145 403322966 403323130 1.760000e-45 195
27 TraesCS7D01G336100 chr6A 83.544 158 21 3 3985 4137 540273720 540273877 6.460000e-30 143
28 TraesCS7D01G336100 chr7A 92.000 1075 60 17 4457 5508 504221545 504222616 0.000000e+00 1485
29 TraesCS7D01G336100 chr7A 83.926 1294 114 45 787 2053 504218750 504219976 0.000000e+00 1151
30 TraesCS7D01G336100 chr7A 92.497 773 49 5 3155 3923 496823079 496823846 0.000000e+00 1098
31 TraesCS7D01G336100 chr7A 88.180 533 46 9 2243 2760 504220674 504221204 2.450000e-173 619
32 TraesCS7D01G336100 chr3A 92.061 781 55 5 3155 3935 375017490 375018263 0.000000e+00 1092
33 TraesCS7D01G336100 chr3A 86.735 196 21 5 2968 3163 26672082 26671892 4.860000e-51 213
34 TraesCS7D01G336100 chr5B 92.021 777 48 8 3155 3931 290450936 290451698 0.000000e+00 1079
35 TraesCS7D01G336100 chr5B 83.230 161 14 8 3981 4137 493520999 493521150 1.080000e-27 135
36 TraesCS7D01G336100 chr3D 91.154 780 58 8 3158 3935 313293128 313292358 0.000000e+00 1048
37 TraesCS7D01G336100 chr1D 91.083 785 53 8 3154 3929 225403218 225403994 0.000000e+00 1046
38 TraesCS7D01G336100 chr1D 87.135 171 18 3 2985 3154 79314126 79314293 2.270000e-44 191
39 TraesCS7D01G336100 chr1D 91.150 113 9 1 4043 4155 383155049 383154938 1.070000e-32 152
40 TraesCS7D01G336100 chr1A 87.255 204 21 3 2965 3163 98227468 98227265 1.730000e-55 228
41 TraesCS7D01G336100 chr1B 85.714 203 21 4 615 816 15712719 15712914 2.260000e-49 207
42 TraesCS7D01G336100 chr1B 81.567 217 28 3 3948 4153 8014860 8015075 1.070000e-37 169
43 TraesCS7D01G336100 chr4A 85.027 187 22 5 2975 3159 514415196 514415014 1.060000e-42 185
44 TraesCS7D01G336100 chr4A 81.383 188 21 3 3936 4113 598265328 598265511 2.320000e-29 141
45 TraesCS7D01G336100 chr2D 83.770 191 19 6 3978 4157 21657762 21657573 2.960000e-38 171
46 TraesCS7D01G336100 chr2D 83.246 191 20 6 3978 4157 21674176 21673987 1.380000e-36 165
47 TraesCS7D01G336100 chrUn 83.696 184 20 1 3940 4113 31787717 31787534 1.380000e-36 165
48 TraesCS7D01G336100 chr3B 80.087 231 33 5 3936 4155 47194269 47194041 6.420000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G336100 chr7D 428022559 428028741 6182 True 11418.0 11418 100.000000 1 6183 1 chr7D.!!$R1 6182
1 TraesCS7D01G336100 chr7B 445661094 445667264 6170 True 2142.5 7880 91.217000 16 6095 4 chr7B.!!$R2 6079
2 TraesCS7D01G336100 chr7B 301758812 301759584 772 True 1042.0 1042 90.909000 3158 3938 1 chr7B.!!$R1 780
3 TraesCS7D01G336100 chr6B 475701392 475702157 765 True 1070.0 1070 91.784000 3155 3931 1 chr6B.!!$R2 776
4 TraesCS7D01G336100 chr6B 140843674 140847658 3984 False 980.0 1594 87.747667 615 5508 3 chr6B.!!$F4 4893
5 TraesCS7D01G336100 chr6D 296696023 296696786 763 False 1098.0 1098 92.497000 3155 3926 1 chr6D.!!$F2 771
6 TraesCS7D01G336100 chr6D 65753174 65756933 3759 False 796.0 1585 86.238750 621 5508 4 chr6D.!!$F4 4887
7 TraesCS7D01G336100 chr6A 82105510 82109683 4173 True 858.0 1489 84.764667 625 5393 3 chr6A.!!$R1 4768
8 TraesCS7D01G336100 chr7A 496823079 496823846 767 False 1098.0 1098 92.497000 3155 3923 1 chr7A.!!$F1 768
9 TraesCS7D01G336100 chr7A 504218750 504222616 3866 False 1085.0 1485 88.035333 787 5508 3 chr7A.!!$F2 4721
10 TraesCS7D01G336100 chr3A 375017490 375018263 773 False 1092.0 1092 92.061000 3155 3935 1 chr3A.!!$F1 780
11 TraesCS7D01G336100 chr5B 290450936 290451698 762 False 1079.0 1079 92.021000 3155 3931 1 chr5B.!!$F1 776
12 TraesCS7D01G336100 chr3D 313292358 313293128 770 True 1048.0 1048 91.154000 3158 3935 1 chr3D.!!$R1 777
13 TraesCS7D01G336100 chr1D 225403218 225403994 776 False 1046.0 1046 91.083000 3154 3929 1 chr1D.!!$F2 775


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.603065 GGTGCCATGAAACCTCCAAC 59.397 55.000 8.97 0.0 33.40 3.77 F
871 897 2.127232 GTTGTTGTGGCCTGCTGGT 61.127 57.895 11.69 0.0 35.27 4.00 F
2656 3822 0.762842 ACATGCGTAGGGGCCAGATA 60.763 55.000 4.39 0.0 0.00 1.98 F
3232 4661 0.183014 TACTAGGCACGAGGAGGAGG 59.817 60.000 0.00 0.0 34.62 4.30 F
3663 5100 0.625316 TGGGCATATTCAGTGCAGGT 59.375 50.000 0.00 0.0 44.25 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1179 1231 0.606604 ACGACCGGCTACACAGAAAT 59.393 50.000 0.0 0.0 0.00 2.17 R
2684 3850 0.033642 TGATTTGCCCGTGTCGTACA 59.966 50.000 0.0 0.0 0.00 2.90 R
3503 4939 0.392461 GCATCTCCGCCACACCTAAA 60.392 55.000 0.0 0.0 0.00 1.85 R
4095 5561 1.944024 CTACACCCACGCAAGAAAACA 59.056 47.619 0.0 0.0 43.62 2.83 R
5540 7244 1.058284 AGGCCCGTACCTTACAAACA 58.942 50.000 0.0 0.0 36.28 2.83 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.076549 GGGTGCCATGAAACCTCCA 59.923 57.895 14.25 0.00 36.64 3.86
36 37 0.603065 GGTGCCATGAAACCTCCAAC 59.397 55.000 8.97 0.00 33.40 3.77
41 42 3.390639 TGCCATGAAACCTCCAACAAAAT 59.609 39.130 0.00 0.00 0.00 1.82
83 85 6.381498 TGTACCTCAAATCCAACTATCCAA 57.619 37.500 0.00 0.00 0.00 3.53
86 88 5.203528 ACCTCAAATCCAACTATCCAATGG 58.796 41.667 0.00 0.00 35.49 3.16
194 196 9.599866 TTTTATCAGAATTAGACACATCGACAT 57.400 29.630 0.00 0.00 0.00 3.06
197 199 4.567959 CAGAATTAGACACATCGACATGCA 59.432 41.667 0.00 0.00 32.57 3.96
224 226 9.634021 TGCCACATGGTTAAACAATCTATATTA 57.366 29.630 0.00 0.00 37.57 0.98
233 235 6.861065 AAACAATCTATATTAGCCACGTGG 57.139 37.500 30.66 30.66 38.53 4.94
239 241 6.413783 TCTATATTAGCCACGTGGAATTCA 57.586 37.500 38.30 18.90 37.39 2.57
266 268 4.990543 AATGGCAATCGTATATGTGTCG 57.009 40.909 0.00 0.00 0.00 4.35
267 269 2.131972 TGGCAATCGTATATGTGTCGC 58.868 47.619 0.00 0.00 0.00 5.19
268 270 2.223947 TGGCAATCGTATATGTGTCGCT 60.224 45.455 0.00 0.00 0.00 4.93
269 271 3.004944 TGGCAATCGTATATGTGTCGCTA 59.995 43.478 0.00 0.00 0.00 4.26
270 272 3.364023 GGCAATCGTATATGTGTCGCTAC 59.636 47.826 0.00 0.00 0.00 3.58
271 273 3.978855 GCAATCGTATATGTGTCGCTACA 59.021 43.478 0.00 0.00 34.63 2.74
284 286 5.933187 TGTCGCTACACACAATTTTACAT 57.067 34.783 0.00 0.00 0.00 2.29
286 288 7.422878 TGTCGCTACACACAATTTTACATAA 57.577 32.000 0.00 0.00 0.00 1.90
287 289 8.035165 TGTCGCTACACACAATTTTACATAAT 57.965 30.769 0.00 0.00 0.00 1.28
288 290 9.152595 TGTCGCTACACACAATTTTACATAATA 57.847 29.630 0.00 0.00 0.00 0.98
372 374 4.290093 TGTACATATGGGCAGAGAAGACT 58.710 43.478 7.80 0.00 0.00 3.24
377 379 5.772672 ACATATGGGCAGAGAAGACTACTAG 59.227 44.000 7.80 0.00 0.00 2.57
385 387 5.180271 CAGAGAAGACTACTAGAGTTCGGT 58.820 45.833 0.00 0.00 39.06 4.69
389 391 2.748532 AGACTACTAGAGTTCGGTGTGC 59.251 50.000 0.00 0.00 39.06 4.57
546 553 6.430962 TTTTTGGATGGTTTGGATTGATCA 57.569 33.333 0.00 0.00 0.00 2.92
597 604 9.084164 CGGTATAGATTTTTGTTAGGGATATCG 57.916 37.037 0.00 0.00 0.00 2.92
599 606 9.939802 GTATAGATTTTTGTTAGGGATATCGGT 57.060 33.333 0.00 0.00 0.00 4.69
682 697 4.864334 CCGCACATCCTCCCAGGC 62.864 72.222 0.00 0.00 34.61 4.85
871 897 2.127232 GTTGTTGTGGCCTGCTGGT 61.127 57.895 11.69 0.00 35.27 4.00
1034 1086 3.452919 CCTAGCCCCTCCCCCTCT 61.453 72.222 0.00 0.00 0.00 3.69
1179 1231 1.682323 GGGTTCAACCGTTTGCCTTTA 59.318 47.619 0.00 0.00 39.83 1.85
1220 1272 1.165270 GGTTGTCTGCCGCAACTATT 58.835 50.000 12.59 0.00 43.93 1.73
1444 1502 1.406539 CAACATTGCTGCTATCCACCC 59.593 52.381 0.00 0.00 0.00 4.61
1502 1560 4.764308 TGTTAGTGTCAAAATGGCATGCTA 59.236 37.500 18.92 12.99 33.03 3.49
1599 1669 1.739562 CAGGCAGGAGCAAGACGTC 60.740 63.158 7.70 7.70 44.61 4.34
1614 1684 3.643763 AGACGTCTCAACAACATCTGAC 58.356 45.455 13.58 0.00 0.00 3.51
1746 1816 3.740115 AGACTGGTTTGTTAGAACGCAT 58.260 40.909 0.00 0.00 0.00 4.73
1806 1877 7.378181 ACATTGTGTTTGACCAATAGGAATTC 58.622 34.615 0.00 0.00 38.69 2.17
1955 2056 3.899980 AGATAGCCAGCAGTCATGTATGA 59.100 43.478 4.42 0.00 0.00 2.15
2027 2131 4.630069 ACTCCGTTATCCAATTTGAGTTCG 59.370 41.667 0.00 0.00 0.00 3.95
2037 2141 7.129109 TCCAATTTGAGTTCGTAACTTGATC 57.871 36.000 0.00 0.00 43.03 2.92
2047 2151 8.252964 AGTTCGTAACTTGATCTGTTAAATCC 57.747 34.615 11.49 2.45 39.04 3.01
2052 2156 4.273318 ACTTGATCTGTTAAATCCTGGGC 58.727 43.478 0.00 0.00 0.00 5.36
2055 2159 3.010027 TGATCTGTTAAATCCTGGGCACA 59.990 43.478 0.00 0.00 0.00 4.57
2117 2459 6.238374 CCAGTATTAATCGGCCTGTTAACAAG 60.238 42.308 10.03 4.67 0.00 3.16
2206 2550 1.691976 AGTCAATGTGTGGACCGAAGA 59.308 47.619 0.00 0.00 34.58 2.87
2270 3253 8.135529 GGGATTTGCAGTTATTTGGTAGAATAC 58.864 37.037 0.00 0.00 42.04 1.89
2343 3326 3.251004 GGATATTTGATCGGTTCAGGTGC 59.749 47.826 0.00 0.00 35.27 5.01
2469 3621 6.702282 GTCTCCCAGATAAAGGAAAATCTACG 59.298 42.308 0.00 0.00 31.25 3.51
2557 3709 6.595716 CCCAGGTTAGTTCTCAACTTATTCTG 59.404 42.308 0.00 0.00 42.81 3.02
2594 3760 4.729227 AGTTTTGGTTTTGTCGGACATT 57.271 36.364 12.26 0.00 0.00 2.71
2642 3808 3.840666 TCTGGATATCCTAAGGGACATGC 59.159 47.826 22.35 0.00 45.43 4.06
2656 3822 0.762842 ACATGCGTAGGGGCCAGATA 60.763 55.000 4.39 0.00 0.00 1.98
2670 3836 5.170748 GGGCCAGATATTGTTTTTCTTGTG 58.829 41.667 4.39 0.00 0.00 3.33
2684 3850 8.091449 TGTTTTTCTTGTGTTGTAATTTGTCCT 58.909 29.630 0.00 0.00 0.00 3.85
2685 3851 8.379902 GTTTTTCTTGTGTTGTAATTTGTCCTG 58.620 33.333 0.00 0.00 0.00 3.86
2686 3852 6.767524 TTCTTGTGTTGTAATTTGTCCTGT 57.232 33.333 0.00 0.00 0.00 4.00
2687 3853 7.867305 TTCTTGTGTTGTAATTTGTCCTGTA 57.133 32.000 0.00 0.00 0.00 2.74
2688 3854 7.254227 TCTTGTGTTGTAATTTGTCCTGTAC 57.746 36.000 0.00 0.00 0.00 2.90
2906 4304 1.002868 GCTCAAAGCTCAGCTCCCA 60.003 57.895 0.00 0.00 38.25 4.37
2958 4366 2.340210 TTTGCTGCCGCCTCATATAA 57.660 45.000 0.00 0.00 34.43 0.98
2960 4368 1.882912 TGCTGCCGCCTCATATAAAG 58.117 50.000 0.00 0.00 34.43 1.85
2961 4369 1.140852 TGCTGCCGCCTCATATAAAGT 59.859 47.619 0.00 0.00 34.43 2.66
2974 4389 6.536582 CCTCATATAAAGTGTCTTGAGTGTGG 59.463 42.308 0.00 0.00 30.97 4.17
2989 4404 0.324738 TGTGGTTTTTCTGCACCCCA 60.325 50.000 0.00 0.00 31.24 4.96
2991 4406 1.367471 GGTTTTTCTGCACCCCAGC 59.633 57.895 0.00 0.00 41.50 4.85
2992 4407 1.115326 GGTTTTTCTGCACCCCAGCT 61.115 55.000 0.00 0.00 41.50 4.24
2993 4408 0.315251 GTTTTTCTGCACCCCAGCTC 59.685 55.000 0.00 0.00 41.50 4.09
2994 4409 1.172180 TTTTTCTGCACCCCAGCTCG 61.172 55.000 0.00 0.00 41.50 5.03
2995 4410 3.551496 TTTCTGCACCCCAGCTCGG 62.551 63.158 0.00 0.00 41.50 4.63
3072 4487 8.599624 ATCTAAAAGTTTGTGGGAATGATCAT 57.400 30.769 1.18 1.18 0.00 2.45
3073 4488 8.055279 TCTAAAAGTTTGTGGGAATGATCATC 57.945 34.615 9.06 2.77 0.00 2.92
3074 4489 6.669125 AAAAGTTTGTGGGAATGATCATCA 57.331 33.333 9.06 0.00 0.00 3.07
3088 4503 8.680903 GGAATGATCATCAACAAATGTTAGAGT 58.319 33.333 9.06 0.00 36.32 3.24
3198 4624 6.342338 AGAACTAAAACCGAGTACATGAGT 57.658 37.500 0.00 0.00 0.00 3.41
3232 4661 0.183014 TACTAGGCACGAGGAGGAGG 59.817 60.000 0.00 0.00 34.62 4.30
3233 4662 1.227664 CTAGGCACGAGGAGGAGGA 59.772 63.158 0.00 0.00 0.00 3.71
3234 4663 0.821711 CTAGGCACGAGGAGGAGGAG 60.822 65.000 0.00 0.00 0.00 3.69
3235 4664 2.285889 TAGGCACGAGGAGGAGGAGG 62.286 65.000 0.00 0.00 0.00 4.30
3236 4665 3.151022 GCACGAGGAGGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
3237 4666 2.443016 CACGAGGAGGAGGAGGGG 60.443 72.222 0.00 0.00 0.00 4.79
3274 4707 2.061220 CAGGTGGTGCCTCAGAAGA 58.939 57.895 0.00 0.00 46.96 2.87
3292 4725 6.934645 TCAGAAGAACACCTTTCGATATTTGT 59.065 34.615 0.00 0.00 34.68 2.83
3398 4831 3.001414 CTGGCATTCTCTGTGACAAGAG 58.999 50.000 5.92 5.92 44.34 2.85
3417 4850 2.485814 GAGGAGTGCCACAAAAGCTAAG 59.514 50.000 0.00 0.00 36.29 2.18
3429 4862 4.889995 ACAAAAGCTAAGAGGCAAGTTCTT 59.110 37.500 0.00 0.00 38.40 2.52
3430 4863 6.017109 CACAAAAGCTAAGAGGCAAGTTCTTA 60.017 38.462 0.00 0.00 36.38 2.10
3431 4864 6.717084 ACAAAAGCTAAGAGGCAAGTTCTTAT 59.283 34.615 0.00 0.00 36.75 1.73
3503 4939 6.569179 ACTAAAAGGCGACATGTTTAACAT 57.431 33.333 4.56 4.56 39.91 2.71
3604 5041 3.301274 GAGATAGAGTTGGGGTAGCACT 58.699 50.000 0.00 0.00 0.00 4.40
3607 5044 1.729586 AGAGTTGGGGTAGCACTGAA 58.270 50.000 0.00 0.00 0.00 3.02
3663 5100 0.625316 TGGGCATATTCAGTGCAGGT 59.375 50.000 0.00 0.00 44.25 4.00
3713 5151 3.546815 GGCTAAAGCGTGCTGATAATGTG 60.547 47.826 0.00 0.00 43.26 3.21
3755 5193 2.334006 ACTTGACATGGGAGGAGTCT 57.666 50.000 0.00 0.00 33.56 3.24
3773 5211 7.967908 AGGAGTCTGTAAAGAAAGATCTGAAA 58.032 34.615 0.00 0.00 35.59 2.69
3820 5258 4.394712 GGACAGGGGTGCGTGGAG 62.395 72.222 0.00 0.00 0.00 3.86
3869 5310 4.038763 TGAGTTGGTTGTGAGATCTTACGT 59.961 41.667 12.51 0.00 0.00 3.57
4017 5473 4.193826 TGTACAGAGCTTCTTGGATGTC 57.806 45.455 0.00 0.00 0.00 3.06
4023 5479 4.698780 CAGAGCTTCTTGGATGTCATTTGA 59.301 41.667 0.00 0.00 0.00 2.69
4036 5492 6.295011 GGATGTCATTTGACCACCAAACATTA 60.295 38.462 8.16 0.00 46.41 1.90
4066 5532 5.648178 TGTTGATGATCATTCCCACAAAG 57.352 39.130 10.14 0.00 0.00 2.77
4075 5541 8.421249 TGATCATTCCCACAAAGTTTTAGATT 57.579 30.769 0.00 0.00 0.00 2.40
4383 5853 1.111116 AATGAATGGATGCCGCTGGG 61.111 55.000 0.00 0.00 0.00 4.45
4404 5874 7.176589 TGGGAATATGTTGGTTATTTGGTTC 57.823 36.000 0.00 0.00 0.00 3.62
4467 6134 7.047891 TGGTATAATGGTCTCTTAGCAGTTTG 58.952 38.462 0.00 0.00 39.39 2.93
5104 6771 1.067295 TGATGGGAGGTGTCTTTGCT 58.933 50.000 0.00 0.00 0.00 3.91
5130 6797 0.304705 CGCAACCTATTGGCATCGAC 59.695 55.000 0.00 0.00 36.23 4.20
5279 6961 5.064071 GCATGGAGTAGAGAAGCTAACAAAC 59.936 44.000 0.00 0.00 0.00 2.93
5305 7005 6.655003 GGATGTTCAGTGGAGATTAGACAAAA 59.345 38.462 0.00 0.00 0.00 2.44
5306 7006 7.148340 GGATGTTCAGTGGAGATTAGACAAAAG 60.148 40.741 0.00 0.00 0.00 2.27
5307 7007 6.826668 TGTTCAGTGGAGATTAGACAAAAGA 58.173 36.000 0.00 0.00 0.00 2.52
5308 7008 6.706270 TGTTCAGTGGAGATTAGACAAAAGAC 59.294 38.462 0.00 0.00 0.00 3.01
5311 7011 6.042093 TCAGTGGAGATTAGACAAAAGACAGT 59.958 38.462 0.00 0.00 0.00 3.55
5312 7012 6.708054 CAGTGGAGATTAGACAAAAGACAGTT 59.292 38.462 0.00 0.00 0.00 3.16
5348 7051 7.676683 TTTTGTATAGGGTCAGAAGATAGCT 57.323 36.000 0.00 0.00 0.00 3.32
5365 7068 1.486726 AGCTATAGGACTTGTGCCCAC 59.513 52.381 1.04 0.00 0.00 4.61
5510 7214 8.469309 AATTCCTTGGTATATCTTGTCCAATG 57.531 34.615 0.00 0.00 38.90 2.82
5511 7215 5.376625 TCCTTGGTATATCTTGTCCAATGC 58.623 41.667 0.00 0.00 38.90 3.56
5515 7219 7.667219 CCTTGGTATATCTTGTCCAATGCTATT 59.333 37.037 0.00 0.00 38.90 1.73
5517 7221 8.621532 TGGTATATCTTGTCCAATGCTATTTC 57.378 34.615 0.00 0.00 0.00 2.17
5518 7222 8.217111 TGGTATATCTTGTCCAATGCTATTTCA 58.783 33.333 0.00 0.00 0.00 2.69
5519 7223 8.725148 GGTATATCTTGTCCAATGCTATTTCAG 58.275 37.037 0.00 0.00 0.00 3.02
5520 7224 9.494271 GTATATCTTGTCCAATGCTATTTCAGA 57.506 33.333 0.00 0.00 0.00 3.27
5523 7227 8.618702 ATCTTGTCCAATGCTATTTCAGATAG 57.381 34.615 0.00 0.00 0.00 2.08
5524 7228 6.484643 TCTTGTCCAATGCTATTTCAGATAGC 59.515 38.462 10.32 10.32 45.28 2.97
5534 7238 6.840075 GCTATTTCAGATAGCATGATGGAAC 58.160 40.000 11.93 0.00 44.64 3.62
5535 7239 6.429078 GCTATTTCAGATAGCATGATGGAACA 59.571 38.462 11.93 0.00 44.64 3.18
5536 7240 7.120873 GCTATTTCAGATAGCATGATGGAACAT 59.879 37.037 11.93 0.00 44.31 2.71
5544 7248 5.217978 AGCATGATGGAACATGTTTGTTT 57.782 34.783 13.36 0.00 46.01 2.83
5545 7249 4.992319 AGCATGATGGAACATGTTTGTTTG 59.008 37.500 13.36 7.52 46.01 2.93
5546 7250 4.751098 GCATGATGGAACATGTTTGTTTGT 59.249 37.500 13.36 0.00 46.01 2.83
5547 7251 5.925397 GCATGATGGAACATGTTTGTTTGTA 59.075 36.000 13.36 0.00 46.01 2.41
5548 7252 6.423302 GCATGATGGAACATGTTTGTTTGTAA 59.577 34.615 13.36 0.00 46.01 2.41
5549 7253 7.359431 GCATGATGGAACATGTTTGTTTGTAAG 60.359 37.037 13.36 0.38 46.01 2.34
5550 7254 6.511416 TGATGGAACATGTTTGTTTGTAAGG 58.489 36.000 13.36 0.00 46.01 2.69
5551 7255 5.923733 TGGAACATGTTTGTTTGTAAGGT 57.076 34.783 13.36 0.00 46.01 3.50
5556 7260 4.276431 ACATGTTTGTTTGTAAGGTACGGG 59.724 41.667 0.00 0.00 29.55 5.28
5565 7269 1.956477 GTAAGGTACGGGCCTATTCGA 59.044 52.381 0.84 0.00 38.03 3.71
5590 7294 6.874278 TCAAGGGAATCTGATGAGTTAAGA 57.126 37.500 0.00 0.00 0.00 2.10
5592 7296 7.865820 TCAAGGGAATCTGATGAGTTAAGAAT 58.134 34.615 0.00 0.00 0.00 2.40
5593 7297 7.989741 TCAAGGGAATCTGATGAGTTAAGAATC 59.010 37.037 0.00 0.00 0.00 2.52
5602 7307 8.534496 TCTGATGAGTTAAGAATCATTGTCTCA 58.466 33.333 0.00 0.00 36.30 3.27
5638 7343 2.287608 GGAGTTTGTTTCGCTTTCAGGG 60.288 50.000 0.00 0.00 0.00 4.45
5676 7381 4.066646 TGTTGCTGTGAGCTAGTTTGTA 57.933 40.909 0.00 0.00 42.97 2.41
5678 7383 3.040147 TGCTGTGAGCTAGTTTGTACC 57.960 47.619 0.00 0.00 42.97 3.34
5679 7384 2.367241 TGCTGTGAGCTAGTTTGTACCA 59.633 45.455 0.00 0.00 42.97 3.25
5680 7385 3.181459 TGCTGTGAGCTAGTTTGTACCAA 60.181 43.478 0.00 0.00 42.97 3.67
5681 7386 4.003648 GCTGTGAGCTAGTTTGTACCAAT 58.996 43.478 0.00 0.00 38.45 3.16
5682 7387 5.175859 GCTGTGAGCTAGTTTGTACCAATA 58.824 41.667 0.00 0.00 38.45 1.90
5721 7498 3.476552 CCGATTTATAGAGCTGGGCAAA 58.523 45.455 0.00 0.00 0.00 3.68
5726 7503 2.706339 ATAGAGCTGGGCAAAGTCTG 57.294 50.000 0.00 0.00 0.00 3.51
5732 7511 1.002544 GCTGGGCAAAGTCTGACTACT 59.997 52.381 11.30 0.00 31.36 2.57
5748 7527 5.506708 TGACTACTATCACTTGGACTAGCA 58.493 41.667 0.00 0.00 0.00 3.49
5788 7567 8.802267 TCAGCTAGCTAAACAATAAACCAAAAT 58.198 29.630 18.86 0.00 0.00 1.82
5828 7607 9.314321 TCGAGTCTGTTCTTATGGAATTATTTC 57.686 33.333 0.00 0.00 36.24 2.17
5866 7645 0.240945 GATGGCAAACAACCGGTCTG 59.759 55.000 8.04 11.45 0.00 3.51
5869 7648 0.310854 GGCAAACAACCGGTCTGAAG 59.689 55.000 8.04 0.00 0.00 3.02
5874 7653 4.351192 CAAACAACCGGTCTGAAGAAAAG 58.649 43.478 8.04 0.00 0.00 2.27
5875 7654 3.553828 ACAACCGGTCTGAAGAAAAGA 57.446 42.857 8.04 0.00 0.00 2.52
5876 7655 4.086706 ACAACCGGTCTGAAGAAAAGAT 57.913 40.909 8.04 0.00 0.00 2.40
5877 7656 3.815401 ACAACCGGTCTGAAGAAAAGATG 59.185 43.478 8.04 0.00 0.00 2.90
5878 7657 4.065088 CAACCGGTCTGAAGAAAAGATGA 58.935 43.478 8.04 0.00 0.00 2.92
5880 7659 4.911390 ACCGGTCTGAAGAAAAGATGAAT 58.089 39.130 0.00 0.00 0.00 2.57
5881 7660 4.938226 ACCGGTCTGAAGAAAAGATGAATC 59.062 41.667 0.00 0.00 0.00 2.52
5883 7662 5.181748 CGGTCTGAAGAAAAGATGAATCCT 58.818 41.667 0.00 0.00 0.00 3.24
5884 7663 5.064452 CGGTCTGAAGAAAAGATGAATCCTG 59.936 44.000 0.00 0.00 0.00 3.86
5885 7664 5.163673 GGTCTGAAGAAAAGATGAATCCTGC 60.164 44.000 0.00 0.00 0.00 4.85
5887 7666 5.413833 TCTGAAGAAAAGATGAATCCTGCAC 59.586 40.000 0.00 0.00 0.00 4.57
5889 7668 5.771666 TGAAGAAAAGATGAATCCTGCACTT 59.228 36.000 0.00 0.00 0.00 3.16
5891 7670 5.568392 AGAAAAGATGAATCCTGCACTTCT 58.432 37.500 0.00 0.00 0.00 2.85
5893 7672 5.893897 AAAGATGAATCCTGCACTTCTTC 57.106 39.130 3.78 5.34 31.19 2.87
5894 7673 4.564782 AGATGAATCCTGCACTTCTTCA 57.435 40.909 13.07 7.64 31.45 3.02
5895 7674 4.260170 AGATGAATCCTGCACTTCTTCAC 58.740 43.478 13.07 4.33 31.45 3.18
5896 7675 2.416747 TGAATCCTGCACTTCTTCACG 58.583 47.619 0.00 0.00 0.00 4.35
5897 7676 1.129437 GAATCCTGCACTTCTTCACGC 59.871 52.381 0.00 0.00 0.00 5.34
5898 7677 0.674895 ATCCTGCACTTCTTCACGCC 60.675 55.000 0.00 0.00 0.00 5.68
5922 7709 2.542595 CGTGTTGACAACCAGTTCCTAC 59.457 50.000 15.59 3.80 0.00 3.18
5923 7710 2.542595 GTGTTGACAACCAGTTCCTACG 59.457 50.000 15.59 0.00 0.00 3.51
5924 7711 2.168936 TGTTGACAACCAGTTCCTACGT 59.831 45.455 15.59 0.00 0.00 3.57
5925 7712 3.200483 GTTGACAACCAGTTCCTACGTT 58.800 45.455 7.10 0.00 0.00 3.99
5926 7713 3.547054 TGACAACCAGTTCCTACGTTT 57.453 42.857 0.00 0.00 0.00 3.60
5959 7791 2.104170 CCGTTAGGAAAGAGAGAGCCT 58.896 52.381 0.00 0.00 41.02 4.58
5960 7792 2.100087 CCGTTAGGAAAGAGAGAGCCTC 59.900 54.545 0.00 0.00 41.02 4.70
5961 7793 2.100087 CGTTAGGAAAGAGAGAGCCTCC 59.900 54.545 0.00 0.00 42.97 4.30
5962 7794 2.060050 TAGGAAAGAGAGAGCCTCCG 57.940 55.000 0.00 0.00 42.97 4.63
5963 7795 0.040499 AGGAAAGAGAGAGCCTCCGT 59.960 55.000 0.00 0.00 42.97 4.69
5964 7796 0.899019 GGAAAGAGAGAGCCTCCGTT 59.101 55.000 0.00 0.00 42.97 4.44
5965 7797 2.100989 GGAAAGAGAGAGCCTCCGTTA 58.899 52.381 0.00 0.00 42.97 3.18
6007 7839 5.358160 TCAGCTGATCGTTTGAATCTCTCTA 59.642 40.000 13.74 0.00 0.00 2.43
6020 7852 3.963428 TCTCTCTAAGAACTGGTTGCC 57.037 47.619 0.00 0.00 0.00 4.52
6025 7857 0.771127 TAAGAACTGGTTGCCCTGCT 59.229 50.000 0.00 0.00 33.14 4.24
6043 7875 6.070538 GCCCTGCTCTAAAGGAGATATGAATA 60.071 42.308 0.00 0.00 43.27 1.75
6075 7907 1.138671 GCATAACGCGGGTGCAAAT 59.861 52.632 22.05 0.00 42.97 2.32
6095 7927 6.075046 GCAAATAATATCCGAAGCGTTTTTCC 60.075 38.462 0.00 0.00 0.00 3.13
6096 7928 6.687081 AATAATATCCGAAGCGTTTTTCCA 57.313 33.333 0.00 0.00 0.00 3.53
6097 7929 4.351131 AATATCCGAAGCGTTTTTCCAC 57.649 40.909 0.00 0.00 0.00 4.02
6098 7930 0.515564 ATCCGAAGCGTTTTTCCACG 59.484 50.000 0.00 0.00 43.36 4.94
6099 7931 0.810823 TCCGAAGCGTTTTTCCACGT 60.811 50.000 0.00 0.00 42.43 4.49
6100 7932 0.656205 CCGAAGCGTTTTTCCACGTG 60.656 55.000 9.08 9.08 42.43 4.49
6101 7933 0.656205 CGAAGCGTTTTTCCACGTGG 60.656 55.000 29.26 29.26 42.43 4.94
6102 7934 0.933047 GAAGCGTTTTTCCACGTGGC 60.933 55.000 30.25 15.83 42.43 5.01
6103 7935 1.658686 AAGCGTTTTTCCACGTGGCA 61.659 50.000 30.25 17.74 42.43 4.92
6104 7936 1.226717 GCGTTTTTCCACGTGGCAA 60.227 52.632 30.25 23.22 42.43 4.52
6105 7937 0.596341 GCGTTTTTCCACGTGGCAAT 60.596 50.000 30.25 0.00 42.43 3.56
6106 7938 1.127701 CGTTTTTCCACGTGGCAATG 58.872 50.000 30.25 20.99 35.34 2.82
6107 7939 1.496934 GTTTTTCCACGTGGCAATGG 58.503 50.000 30.25 11.92 37.32 3.16
6108 7940 0.249657 TTTTTCCACGTGGCAATGGC 60.250 50.000 30.25 0.00 35.81 4.40
6118 7950 2.486966 GCAATGGCCGAGAACAGC 59.513 61.111 0.00 0.00 0.00 4.40
6119 7951 2.334946 GCAATGGCCGAGAACAGCA 61.335 57.895 0.00 0.00 0.00 4.41
6120 7952 1.798735 CAATGGCCGAGAACAGCAG 59.201 57.895 0.00 0.00 0.00 4.24
6121 7953 0.674581 CAATGGCCGAGAACAGCAGA 60.675 55.000 0.00 0.00 0.00 4.26
6122 7954 0.036732 AATGGCCGAGAACAGCAGAA 59.963 50.000 0.00 0.00 0.00 3.02
6123 7955 0.392193 ATGGCCGAGAACAGCAGAAG 60.392 55.000 0.00 0.00 0.00 2.85
6124 7956 2.394563 GGCCGAGAACAGCAGAAGC 61.395 63.158 0.00 0.00 42.56 3.86
6125 7957 1.669115 GCCGAGAACAGCAGAAGCA 60.669 57.895 0.00 0.00 45.49 3.91
6126 7958 1.023513 GCCGAGAACAGCAGAAGCAT 61.024 55.000 0.00 0.00 45.49 3.79
6127 7959 0.725686 CCGAGAACAGCAGAAGCATG 59.274 55.000 0.00 0.00 45.49 4.06
6128 7960 0.725686 CGAGAACAGCAGAAGCATGG 59.274 55.000 0.00 0.00 45.49 3.66
6129 7961 0.450983 GAGAACAGCAGAAGCATGGC 59.549 55.000 0.00 0.00 45.49 4.40
6130 7962 0.251033 AGAACAGCAGAAGCATGGCA 60.251 50.000 0.00 0.00 45.49 4.92
6131 7963 0.599558 GAACAGCAGAAGCATGGCAA 59.400 50.000 0.00 0.00 45.49 4.52
6132 7964 0.316204 AACAGCAGAAGCATGGCAAC 59.684 50.000 0.00 0.00 45.49 4.17
6133 7965 0.538977 ACAGCAGAAGCATGGCAACT 60.539 50.000 0.00 0.00 45.49 3.16
6134 7966 0.601558 CAGCAGAAGCATGGCAACTT 59.398 50.000 5.89 5.89 45.49 2.66
6135 7967 1.000506 CAGCAGAAGCATGGCAACTTT 59.999 47.619 7.47 0.00 45.49 2.66
6136 7968 2.229543 CAGCAGAAGCATGGCAACTTTA 59.770 45.455 7.47 0.00 45.49 1.85
6137 7969 2.892852 AGCAGAAGCATGGCAACTTTAA 59.107 40.909 7.47 0.00 45.49 1.52
6138 7970 3.057033 AGCAGAAGCATGGCAACTTTAAG 60.057 43.478 7.47 0.00 45.49 1.85
6139 7971 3.248266 CAGAAGCATGGCAACTTTAAGC 58.752 45.455 7.47 0.00 37.61 3.09
6140 7972 3.057033 CAGAAGCATGGCAACTTTAAGCT 60.057 43.478 7.47 0.00 37.61 3.74
6141 7973 3.575687 AGAAGCATGGCAACTTTAAGCTT 59.424 39.130 3.48 3.48 42.82 3.74
6142 7974 3.582714 AGCATGGCAACTTTAAGCTTC 57.417 42.857 0.00 0.00 37.61 3.86
6143 7975 3.160269 AGCATGGCAACTTTAAGCTTCT 58.840 40.909 0.00 0.00 37.61 2.85
6144 7976 3.192212 AGCATGGCAACTTTAAGCTTCTC 59.808 43.478 0.00 0.00 37.61 2.87
6145 7977 3.674410 GCATGGCAACTTTAAGCTTCTCC 60.674 47.826 0.00 0.00 37.61 3.71
6146 7978 2.514803 TGGCAACTTTAAGCTTCTCCC 58.485 47.619 0.00 0.00 37.61 4.30
6147 7979 2.108250 TGGCAACTTTAAGCTTCTCCCT 59.892 45.455 0.00 0.00 37.61 4.20
6148 7980 3.329520 TGGCAACTTTAAGCTTCTCCCTA 59.670 43.478 0.00 0.00 37.61 3.53
6149 7981 3.690139 GGCAACTTTAAGCTTCTCCCTAC 59.310 47.826 0.00 0.00 0.00 3.18
6150 7982 4.324267 GCAACTTTAAGCTTCTCCCTACA 58.676 43.478 0.00 0.00 0.00 2.74
6151 7983 4.760204 GCAACTTTAAGCTTCTCCCTACAA 59.240 41.667 0.00 0.00 0.00 2.41
6152 7984 5.334957 GCAACTTTAAGCTTCTCCCTACAAC 60.335 44.000 0.00 0.00 0.00 3.32
6153 7985 4.907809 ACTTTAAGCTTCTCCCTACAACC 58.092 43.478 0.00 0.00 0.00 3.77
6154 7986 4.597940 ACTTTAAGCTTCTCCCTACAACCT 59.402 41.667 0.00 0.00 0.00 3.50
6155 7987 5.783875 ACTTTAAGCTTCTCCCTACAACCTA 59.216 40.000 0.00 0.00 0.00 3.08
6156 7988 6.444171 ACTTTAAGCTTCTCCCTACAACCTAT 59.556 38.462 0.00 0.00 0.00 2.57
6157 7989 6.481434 TTAAGCTTCTCCCTACAACCTATC 57.519 41.667 0.00 0.00 0.00 2.08
6158 7990 3.995636 AGCTTCTCCCTACAACCTATCA 58.004 45.455 0.00 0.00 0.00 2.15
6159 7991 4.362677 AGCTTCTCCCTACAACCTATCAA 58.637 43.478 0.00 0.00 0.00 2.57
6160 7992 4.407296 AGCTTCTCCCTACAACCTATCAAG 59.593 45.833 0.00 0.00 0.00 3.02
6161 7993 4.698575 CTTCTCCCTACAACCTATCAAGC 58.301 47.826 0.00 0.00 0.00 4.01
6162 7994 2.693591 TCTCCCTACAACCTATCAAGCG 59.306 50.000 0.00 0.00 0.00 4.68
6163 7995 2.693591 CTCCCTACAACCTATCAAGCGA 59.306 50.000 0.00 0.00 0.00 4.93
6164 7996 2.429610 TCCCTACAACCTATCAAGCGAC 59.570 50.000 0.00 0.00 0.00 5.19
6165 7997 2.167693 CCCTACAACCTATCAAGCGACA 59.832 50.000 0.00 0.00 0.00 4.35
6166 7998 3.187700 CCTACAACCTATCAAGCGACAC 58.812 50.000 0.00 0.00 0.00 3.67
6167 7999 3.119101 CCTACAACCTATCAAGCGACACT 60.119 47.826 0.00 0.00 0.00 3.55
6168 8000 4.097437 CCTACAACCTATCAAGCGACACTA 59.903 45.833 0.00 0.00 0.00 2.74
6169 8001 3.846360 ACAACCTATCAAGCGACACTAC 58.154 45.455 0.00 0.00 0.00 2.73
6170 8002 3.187700 CAACCTATCAAGCGACACTACC 58.812 50.000 0.00 0.00 0.00 3.18
6171 8003 2.736347 ACCTATCAAGCGACACTACCT 58.264 47.619 0.00 0.00 0.00 3.08
6172 8004 2.427453 ACCTATCAAGCGACACTACCTG 59.573 50.000 0.00 0.00 0.00 4.00
6173 8005 2.464865 CTATCAAGCGACACTACCTGC 58.535 52.381 0.00 0.00 0.00 4.85
6174 8006 0.608130 ATCAAGCGACACTACCTGCA 59.392 50.000 0.00 0.00 0.00 4.41
6175 8007 0.319555 TCAAGCGACACTACCTGCAC 60.320 55.000 0.00 0.00 0.00 4.57
6176 8008 0.599991 CAAGCGACACTACCTGCACA 60.600 55.000 0.00 0.00 0.00 4.57
6177 8009 0.600255 AAGCGACACTACCTGCACAC 60.600 55.000 0.00 0.00 0.00 3.82
6178 8010 1.300620 GCGACACTACCTGCACACA 60.301 57.895 0.00 0.00 0.00 3.72
6179 8011 0.878523 GCGACACTACCTGCACACAA 60.879 55.000 0.00 0.00 0.00 3.33
6180 8012 1.795768 CGACACTACCTGCACACAAT 58.204 50.000 0.00 0.00 0.00 2.71
6181 8013 2.929161 GCGACACTACCTGCACACAATA 60.929 50.000 0.00 0.00 0.00 1.90
6182 8014 3.322369 CGACACTACCTGCACACAATAA 58.678 45.455 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.743183 GCACCCACAGTATAGAGGCAAG 60.743 54.545 0.00 0.00 0.00 4.01
1 2 1.209504 GCACCCACAGTATAGAGGCAA 59.790 52.381 0.00 0.00 0.00 4.52
2 3 0.830648 GCACCCACAGTATAGAGGCA 59.169 55.000 0.00 0.00 0.00 4.75
3 4 0.106894 GGCACCCACAGTATAGAGGC 59.893 60.000 0.00 0.00 0.00 4.70
4 5 1.496060 TGGCACCCACAGTATAGAGG 58.504 55.000 0.00 0.00 0.00 3.69
5 6 2.700371 TCATGGCACCCACAGTATAGAG 59.300 50.000 0.00 0.00 35.80 2.43
6 7 2.758130 TCATGGCACCCACAGTATAGA 58.242 47.619 0.00 0.00 35.80 1.98
7 8 3.558931 TTCATGGCACCCACAGTATAG 57.441 47.619 0.00 0.00 35.80 1.31
8 9 3.616219 GTTTCATGGCACCCACAGTATA 58.384 45.455 0.00 0.00 35.80 1.47
9 10 2.446435 GTTTCATGGCACCCACAGTAT 58.554 47.619 0.00 0.00 35.80 2.12
10 11 1.546773 GGTTTCATGGCACCCACAGTA 60.547 52.381 0.00 0.00 35.80 2.74
11 12 0.827507 GGTTTCATGGCACCCACAGT 60.828 55.000 0.00 0.00 35.80 3.55
12 13 0.540365 AGGTTTCATGGCACCCACAG 60.540 55.000 9.86 0.00 35.80 3.66
13 14 0.539438 GAGGTTTCATGGCACCCACA 60.539 55.000 9.86 0.00 35.80 4.17
14 15 1.250840 GGAGGTTTCATGGCACCCAC 61.251 60.000 9.86 5.83 35.80 4.61
139 141 9.796120 CTTGTTGTTTAGAATTTACCAAGACAA 57.204 29.630 0.00 0.00 30.90 3.18
172 174 5.464722 GCATGTCGATGTGTCTAATTCTGAT 59.535 40.000 0.00 0.00 31.50 2.90
178 180 3.249320 GCATGCATGTCGATGTGTCTAAT 59.751 43.478 26.79 0.00 31.50 1.73
189 191 1.065109 CCATGTGGCATGCATGTCG 59.935 57.895 25.23 11.47 41.38 4.35
194 196 1.966354 TGTTTAACCATGTGGCATGCA 59.034 42.857 21.36 2.54 39.32 3.96
197 199 8.710749 ATATAGATTGTTTAACCATGTGGCAT 57.289 30.769 0.00 0.00 39.32 4.40
207 209 8.280497 CCACGTGGCTAATATAGATTGTTTAAC 58.720 37.037 24.02 0.00 0.00 2.01
208 210 8.205512 TCCACGTGGCTAATATAGATTGTTTAA 58.794 33.333 30.25 2.14 34.44 1.52
224 226 6.239008 CCATTAATTATGAATTCCACGTGGCT 60.239 38.462 30.25 16.44 36.26 4.75
229 231 7.060979 CGATTGCCATTAATTATGAATTCCACG 59.939 37.037 2.27 0.00 36.26 4.94
262 264 5.933187 ATGTAAAATTGTGTGTAGCGACA 57.067 34.783 0.00 0.00 0.00 4.35
360 362 4.034742 CGAACTCTAGTAGTCTTCTCTGCC 59.965 50.000 0.00 0.00 37.50 4.85
372 374 2.486982 GTCTGCACACCGAACTCTAGTA 59.513 50.000 0.00 0.00 0.00 1.82
377 379 1.195448 CATTGTCTGCACACCGAACTC 59.805 52.381 0.00 0.00 29.76 3.01
389 391 8.586570 TTTTATTTTACACCTTGCATTGTCTG 57.413 30.769 0.00 0.00 0.00 3.51
455 457 5.508200 TCCCCGCAATTGTGTAATTATTC 57.492 39.130 17.34 0.00 34.81 1.75
595 602 5.048013 CCTGTGCAGTTGATATCTATACCGA 60.048 44.000 3.98 0.00 0.00 4.69
596 603 5.164233 CCTGTGCAGTTGATATCTATACCG 58.836 45.833 3.98 0.00 0.00 4.02
597 604 5.928839 CACCTGTGCAGTTGATATCTATACC 59.071 44.000 3.98 0.00 0.00 2.73
599 606 6.976934 TCACCTGTGCAGTTGATATCTATA 57.023 37.500 3.98 0.00 0.00 1.31
602 609 4.767578 ATCACCTGTGCAGTTGATATCT 57.232 40.909 9.93 0.00 38.55 1.98
776 792 3.043713 CTGCGCGCCAGAGACAAA 61.044 61.111 30.77 5.02 44.64 2.83
1174 1226 3.606687 ACCGGCTACACAGAAATAAAGG 58.393 45.455 0.00 0.00 0.00 3.11
1179 1231 0.606604 ACGACCGGCTACACAGAAAT 59.393 50.000 0.00 0.00 0.00 2.17
1220 1272 1.965930 CGTACAAGGCTTGCCTGCA 60.966 57.895 26.45 4.70 34.04 4.41
1444 1502 1.928503 GCATGACATTCAAATTGGCCG 59.071 47.619 0.00 0.00 0.00 6.13
1614 1684 1.656818 ATTTGAAGCCGGTGCCATCG 61.657 55.000 1.90 0.00 38.69 3.84
1746 1816 7.068839 TGCAGAAAATAAACCAGACAAACCTTA 59.931 33.333 0.00 0.00 0.00 2.69
1955 2056 8.462811 TGTGTATAATGTTTTATGCCACGATTT 58.537 29.630 0.00 0.00 35.68 2.17
2027 2131 6.183360 GCCCAGGATTTAACAGATCAAGTTAC 60.183 42.308 9.49 1.34 31.67 2.50
2037 2141 2.795329 ACTGTGCCCAGGATTTAACAG 58.205 47.619 0.05 0.00 43.36 3.16
2047 2151 3.189285 CAAACTTGAAAACTGTGCCCAG 58.811 45.455 0.00 0.00 44.68 4.45
2052 2156 9.221775 GTTCAGTATACAAACTTGAAAACTGTG 57.778 33.333 5.50 0.00 36.64 3.66
2055 2159 7.636326 CGGTTCAGTATACAAACTTGAAAACT 58.364 34.615 16.23 0.00 0.00 2.66
2230 2595 3.322828 GCAAATCCCACGGTAGTATAGGA 59.677 47.826 0.00 0.00 0.00 2.94
2234 2599 2.504175 ACTGCAAATCCCACGGTAGTAT 59.496 45.455 0.00 0.00 0.00 2.12
2236 2601 0.690762 ACTGCAAATCCCACGGTAGT 59.309 50.000 0.00 0.00 0.00 2.73
2241 2606 3.056891 ACCAAATAACTGCAAATCCCACG 60.057 43.478 0.00 0.00 0.00 4.94
2343 3326 8.188531 CCAATTGGCACTAAACAAAATATGAG 57.811 34.615 12.53 0.00 0.00 2.90
2417 3569 9.820725 AAATTCAGAATTTTCATTGACTCACAA 57.179 25.926 14.43 0.00 37.84 3.33
2594 3760 8.750515 TGATATCTGATGAATTAGCAAAACCA 57.249 30.769 3.98 0.00 0.00 3.67
2642 3808 2.930826 AACAATATCTGGCCCCTACG 57.069 50.000 0.00 0.00 0.00 3.51
2670 3836 5.910637 TGTCGTACAGGACAAATTACAAC 57.089 39.130 2.43 0.00 43.55 3.32
2684 3850 0.033642 TGATTTGCCCGTGTCGTACA 59.966 50.000 0.00 0.00 0.00 2.90
2685 3851 1.149987 TTGATTTGCCCGTGTCGTAC 58.850 50.000 0.00 0.00 0.00 3.67
2686 3852 2.102070 ATTGATTTGCCCGTGTCGTA 57.898 45.000 0.00 0.00 0.00 3.43
2687 3853 2.006888 CTATTGATTTGCCCGTGTCGT 58.993 47.619 0.00 0.00 0.00 4.34
2688 3854 2.006888 ACTATTGATTTGCCCGTGTCG 58.993 47.619 0.00 0.00 0.00 4.35
2820 4011 9.706691 CTTGTTGTAACTTATAAGACTTCCTCA 57.293 33.333 19.38 7.04 0.00 3.86
2884 4282 1.817447 GGAGCTGAGCTTTGAGCAATT 59.183 47.619 9.00 0.00 45.56 2.32
2885 4283 1.461559 GGAGCTGAGCTTTGAGCAAT 58.538 50.000 9.00 0.00 45.56 3.56
2906 4304 1.064537 TGCATAGCACATGTCCCACAT 60.065 47.619 0.00 0.00 34.31 3.21
2958 4366 5.010282 AGAAAAACCACACTCAAGACACTT 58.990 37.500 0.00 0.00 0.00 3.16
2960 4368 4.662145 CAGAAAAACCACACTCAAGACAC 58.338 43.478 0.00 0.00 0.00 3.67
2961 4369 3.128589 GCAGAAAAACCACACTCAAGACA 59.871 43.478 0.00 0.00 0.00 3.41
2974 4389 0.315251 GAGCTGGGGTGCAGAAAAAC 59.685 55.000 0.00 0.00 34.99 2.43
2991 4406 2.363795 TAGAGGGGGTGCACCGAG 60.364 66.667 29.08 0.00 41.60 4.63
2992 4407 2.682494 GTAGAGGGGGTGCACCGA 60.682 66.667 29.08 7.41 41.60 4.69
2993 4408 3.000819 TGTAGAGGGGGTGCACCG 61.001 66.667 29.08 0.00 41.60 4.94
2994 4409 2.669240 GTGTAGAGGGGGTGCACC 59.331 66.667 28.57 28.57 39.11 5.01
2995 4410 2.669240 GGTGTAGAGGGGGTGCAC 59.331 66.667 8.80 8.80 0.00 4.57
2996 4411 2.609610 GGGTGTAGAGGGGGTGCA 60.610 66.667 0.00 0.00 0.00 4.57
2997 4412 2.609610 TGGGTGTAGAGGGGGTGC 60.610 66.667 0.00 0.00 0.00 5.01
2998 4413 2.656069 CGTGGGTGTAGAGGGGGTG 61.656 68.421 0.00 0.00 0.00 4.61
2999 4414 2.284405 CGTGGGTGTAGAGGGGGT 60.284 66.667 0.00 0.00 0.00 4.95
3000 4415 3.782443 GCGTGGGTGTAGAGGGGG 61.782 72.222 0.00 0.00 0.00 5.40
3001 4416 2.521958 CTTGCGTGGGTGTAGAGGGG 62.522 65.000 0.00 0.00 0.00 4.79
3002 4417 1.079127 CTTGCGTGGGTGTAGAGGG 60.079 63.158 0.00 0.00 0.00 4.30
3003 4418 0.320374 TTCTTGCGTGGGTGTAGAGG 59.680 55.000 0.00 0.00 0.00 3.69
3004 4419 2.163818 TTTCTTGCGTGGGTGTAGAG 57.836 50.000 0.00 0.00 0.00 2.43
3005 4420 2.215196 GTTTTCTTGCGTGGGTGTAGA 58.785 47.619 0.00 0.00 0.00 2.59
3043 4458 8.885494 TCATTCCCACAAACTTTTAGATTTTG 57.115 30.769 0.00 0.00 36.49 2.44
3072 4487 4.261572 GCAAGCCACTCTAACATTTGTTGA 60.262 41.667 6.21 1.84 38.90 3.18
3073 4488 3.983344 GCAAGCCACTCTAACATTTGTTG 59.017 43.478 6.21 0.00 38.90 3.33
3074 4489 3.636300 TGCAAGCCACTCTAACATTTGTT 59.364 39.130 1.08 1.08 41.73 2.83
3088 4503 0.177604 CCACCAAACTTTGCAAGCCA 59.822 50.000 0.00 0.00 0.00 4.75
3148 4563 8.847196 ACCAAGTCTAAAACCTTTTGAGTAATC 58.153 33.333 0.00 0.00 0.00 1.75
3149 4564 8.762481 ACCAAGTCTAAAACCTTTTGAGTAAT 57.238 30.769 0.00 0.00 0.00 1.89
3150 4565 9.333724 CTACCAAGTCTAAAACCTTTTGAGTAA 57.666 33.333 0.00 0.00 0.00 2.24
3151 4566 8.707449 TCTACCAAGTCTAAAACCTTTTGAGTA 58.293 33.333 0.00 0.00 0.00 2.59
3172 4596 6.624423 TCATGTACTCGGTTTTAGTTCTACC 58.376 40.000 0.00 0.00 0.00 3.18
3198 4624 3.367703 GCCTAGTAGTACTGAAACCGCAA 60.368 47.826 13.29 0.00 0.00 4.85
3274 4707 5.067273 TGACCACAAATATCGAAAGGTGTT 58.933 37.500 0.00 0.00 0.00 3.32
3292 4725 0.401356 TCCTTCTGCAGCATTGACCA 59.599 50.000 9.47 0.00 0.00 4.02
3341 4774 5.591472 CACTTCATCCATCTGGCTTTGATTA 59.409 40.000 0.00 0.00 34.44 1.75
3398 4831 2.485814 CTCTTAGCTTTTGTGGCACTCC 59.514 50.000 19.83 2.59 0.00 3.85
3417 4850 4.068599 GCCATCCTATAAGAACTTGCCTC 58.931 47.826 0.00 0.00 0.00 4.70
3429 4862 0.963962 GGTCGAACCGCCATCCTATA 59.036 55.000 0.00 0.00 0.00 1.31
3430 4863 1.746517 GGTCGAACCGCCATCCTAT 59.253 57.895 0.00 0.00 0.00 2.57
3431 4864 2.428925 GGGTCGAACCGCCATCCTA 61.429 63.158 2.28 0.00 39.83 2.94
3503 4939 0.392461 GCATCTCCGCCACACCTAAA 60.392 55.000 0.00 0.00 0.00 1.85
3604 5041 4.356405 TGGACAAGCTTCTCTTCATTCA 57.644 40.909 0.00 0.00 31.27 2.57
3607 5044 4.090761 TGTTGGACAAGCTTCTCTTCAT 57.909 40.909 0.00 0.00 31.27 2.57
3663 5100 2.659016 CACTGGCGCTTCTGGAGA 59.341 61.111 7.64 0.00 0.00 3.71
3713 5151 1.391577 GTCTACCCCGACCTCTCTTC 58.608 60.000 0.00 0.00 0.00 2.87
3755 5193 7.735917 TCCAGTCTTTCAGATCTTTCTTTACA 58.264 34.615 0.00 0.00 0.00 2.41
3820 5258 0.752743 TGGCACATGGATAGCAAGCC 60.753 55.000 0.00 0.00 40.93 4.35
3869 5310 2.185387 GGGTAGGCTAGAGGTGAAACA 58.815 52.381 0.00 0.00 39.98 2.83
3902 5349 5.789521 ACAACAACAACAAAGCCTTTAGTT 58.210 33.333 0.00 0.00 0.00 2.24
4000 5456 4.698780 TCAAATGACATCCAAGAAGCTCTG 59.301 41.667 0.00 0.00 0.00 3.35
4010 5466 2.967745 TGGTGGTCAAATGACATCCA 57.032 45.000 18.29 18.29 46.47 3.41
4017 5473 5.177327 GCTTGTAATGTTTGGTGGTCAAATG 59.823 40.000 0.00 0.00 45.79 2.32
4023 5479 4.161377 ACAAAGCTTGTAATGTTTGGTGGT 59.839 37.500 0.00 0.00 43.27 4.16
4095 5561 1.944024 CTACACCCACGCAAGAAAACA 59.056 47.619 0.00 0.00 43.62 2.83
4332 5798 8.302965 ATATACATAATATGCTAGCACATGCG 57.697 34.615 22.07 8.72 36.39 4.73
4383 5853 9.573133 CAAGAGAACCAAATAACCAACATATTC 57.427 33.333 0.00 0.00 0.00 1.75
4404 5874 7.288672 CGTTTAACTGGTAACTTTAGCAAGAG 58.711 38.462 2.74 0.00 40.23 2.85
4467 6134 8.295288 CAGATTCTCTTAATACCAAATCCATGC 58.705 37.037 0.00 0.00 0.00 4.06
5104 6771 2.169561 TGCCAATAGGTTGCGTGATCTA 59.830 45.455 0.00 0.00 37.19 1.98
5279 6961 4.142160 TGTCTAATCTCCACTGAACATCCG 60.142 45.833 0.00 0.00 0.00 4.18
5318 7018 9.981460 ATCTTCTGACCCTATACAAAAATCTTT 57.019 29.630 0.00 0.00 0.00 2.52
5365 7068 9.630098 AATTTACATGAGTAAGAAACATGCTTG 57.370 29.630 0.00 0.00 43.21 4.01
5510 7214 6.429078 TGTTCCATCATGCTATCTGAAATAGC 59.571 38.462 9.56 9.56 45.28 2.97
5511 7215 7.974482 TGTTCCATCATGCTATCTGAAATAG 57.026 36.000 0.00 0.00 0.00 1.73
5515 7219 5.687780 ACATGTTCCATCATGCTATCTGAA 58.312 37.500 0.00 0.00 46.15 3.02
5517 7221 6.183360 ACAAACATGTTCCATCATGCTATCTG 60.183 38.462 12.39 3.67 46.15 2.90
5518 7222 5.889853 ACAAACATGTTCCATCATGCTATCT 59.110 36.000 12.39 0.00 46.15 1.98
5519 7223 6.140303 ACAAACATGTTCCATCATGCTATC 57.860 37.500 12.39 0.00 46.15 2.08
5520 7224 6.534475 AACAAACATGTTCCATCATGCTAT 57.466 33.333 12.39 0.00 46.15 2.97
5521 7225 5.981088 AACAAACATGTTCCATCATGCTA 57.019 34.783 12.39 0.00 46.15 3.49
5522 7226 4.877378 AACAAACATGTTCCATCATGCT 57.123 36.364 12.39 0.00 46.15 3.79
5523 7227 4.751098 ACAAACAAACATGTTCCATCATGC 59.249 37.500 12.39 0.00 46.15 4.06
5525 7229 7.153985 CCTTACAAACAAACATGTTCCATCAT 58.846 34.615 12.39 0.00 0.00 2.45
5526 7230 6.097554 ACCTTACAAACAAACATGTTCCATCA 59.902 34.615 12.39 0.00 0.00 3.07
5527 7231 6.512297 ACCTTACAAACAAACATGTTCCATC 58.488 36.000 12.39 0.00 0.00 3.51
5528 7232 6.478512 ACCTTACAAACAAACATGTTCCAT 57.521 33.333 12.39 0.00 0.00 3.41
5529 7233 5.923733 ACCTTACAAACAAACATGTTCCA 57.076 34.783 12.39 0.00 0.00 3.53
5530 7234 5.910723 CGTACCTTACAAACAAACATGTTCC 59.089 40.000 12.39 0.00 0.00 3.62
5531 7235 5.910723 CCGTACCTTACAAACAAACATGTTC 59.089 40.000 12.39 0.00 0.00 3.18
5532 7236 5.221087 CCCGTACCTTACAAACAAACATGTT 60.221 40.000 4.92 4.92 0.00 2.71
5533 7237 4.276431 CCCGTACCTTACAAACAAACATGT 59.724 41.667 0.00 0.00 0.00 3.21
5534 7238 4.789784 CCCGTACCTTACAAACAAACATG 58.210 43.478 0.00 0.00 0.00 3.21
5535 7239 3.253921 GCCCGTACCTTACAAACAAACAT 59.746 43.478 0.00 0.00 0.00 2.71
5536 7240 2.617774 GCCCGTACCTTACAAACAAACA 59.382 45.455 0.00 0.00 0.00 2.83
5537 7241 2.030893 GGCCCGTACCTTACAAACAAAC 60.031 50.000 0.00 0.00 0.00 2.93
5538 7242 2.158638 AGGCCCGTACCTTACAAACAAA 60.159 45.455 0.00 0.00 36.28 2.83
5539 7243 1.420891 AGGCCCGTACCTTACAAACAA 59.579 47.619 0.00 0.00 36.28 2.83
5540 7244 1.058284 AGGCCCGTACCTTACAAACA 58.942 50.000 0.00 0.00 36.28 2.83
5541 7245 3.548745 ATAGGCCCGTACCTTACAAAC 57.451 47.619 0.00 0.00 41.50 2.93
5542 7246 3.430651 CGAATAGGCCCGTACCTTACAAA 60.431 47.826 0.00 0.00 41.50 2.83
5543 7247 2.101249 CGAATAGGCCCGTACCTTACAA 59.899 50.000 0.00 0.00 41.50 2.41
5544 7248 1.682854 CGAATAGGCCCGTACCTTACA 59.317 52.381 0.00 0.00 41.50 2.41
5545 7249 1.956477 TCGAATAGGCCCGTACCTTAC 59.044 52.381 0.00 0.00 41.50 2.34
5546 7250 2.363306 TCGAATAGGCCCGTACCTTA 57.637 50.000 0.00 0.00 41.50 2.69
5547 7251 1.713297 ATCGAATAGGCCCGTACCTT 58.287 50.000 0.00 0.00 41.50 3.50
5548 7252 1.617357 GAATCGAATAGGCCCGTACCT 59.383 52.381 0.00 0.00 44.31 3.08
5549 7253 1.342174 TGAATCGAATAGGCCCGTACC 59.658 52.381 0.00 0.00 0.00 3.34
5550 7254 2.806608 TGAATCGAATAGGCCCGTAC 57.193 50.000 0.00 0.00 0.00 3.67
5551 7255 2.036733 CCTTGAATCGAATAGGCCCGTA 59.963 50.000 0.00 0.00 0.00 4.02
5565 7269 7.865820 TCTTAACTCATCAGATTCCCTTGAAT 58.134 34.615 0.00 0.00 43.91 2.57
5587 7291 7.965107 GCTAAAAATCGTGAGACAATGATTCTT 59.035 33.333 0.00 0.00 46.97 2.52
5588 7292 7.335422 AGCTAAAAATCGTGAGACAATGATTCT 59.665 33.333 0.00 0.00 46.97 2.40
5590 7294 7.335422 AGAGCTAAAAATCGTGAGACAATGATT 59.665 33.333 0.00 0.00 46.97 2.57
5592 7296 6.091305 CAGAGCTAAAAATCGTGAGACAATGA 59.909 38.462 0.00 0.00 46.97 2.57
5593 7297 6.246449 CAGAGCTAAAAATCGTGAGACAATG 58.754 40.000 0.00 0.00 46.97 2.82
5602 7307 5.063880 ACAAACTCCAGAGCTAAAAATCGT 58.936 37.500 0.00 0.00 0.00 3.73
5638 7343 5.290158 CAGCAACAATTCATATGGTTTCAGC 59.710 40.000 2.13 0.32 0.00 4.26
5676 7381 3.199880 GCTCTGCCACTGTATATTGGT 57.800 47.619 0.00 0.00 35.09 3.67
5721 7498 5.822204 AGTCCAAGTGATAGTAGTCAGACT 58.178 41.667 8.50 8.50 29.95 3.24
5726 7503 6.642707 ATGCTAGTCCAAGTGATAGTAGTC 57.357 41.667 0.00 0.00 0.00 2.59
5748 7527 3.568853 GCTAGCTGATTCCATGAGCAAAT 59.431 43.478 7.70 0.00 42.27 2.32
5802 7581 9.314321 GAAATAATTCCATAAGAACAGACTCGA 57.686 33.333 0.00 0.00 37.29 4.04
5866 7645 5.893897 AGTGCAGGATTCATCTTTTCTTC 57.106 39.130 0.00 0.00 0.00 2.87
5869 7648 5.893897 AGAAGTGCAGGATTCATCTTTTC 57.106 39.130 8.48 0.00 0.00 2.29
5874 7653 3.063180 CGTGAAGAAGTGCAGGATTCATC 59.937 47.826 8.48 6.73 32.93 2.92
5875 7654 3.005554 CGTGAAGAAGTGCAGGATTCAT 58.994 45.455 8.48 0.00 32.93 2.57
5876 7655 2.416747 CGTGAAGAAGTGCAGGATTCA 58.583 47.619 8.48 4.71 0.00 2.57
5877 7656 1.129437 GCGTGAAGAAGTGCAGGATTC 59.871 52.381 0.00 0.00 0.00 2.52
5878 7657 1.160137 GCGTGAAGAAGTGCAGGATT 58.840 50.000 0.00 0.00 0.00 3.01
5880 7659 1.301716 GGCGTGAAGAAGTGCAGGA 60.302 57.895 0.00 0.00 0.00 3.86
5881 7660 0.886490 AAGGCGTGAAGAAGTGCAGG 60.886 55.000 0.00 0.00 0.00 4.85
5883 7662 1.221466 CGAAGGCGTGAAGAAGTGCA 61.221 55.000 0.00 0.00 0.00 4.57
5884 7663 1.493311 CGAAGGCGTGAAGAAGTGC 59.507 57.895 0.00 0.00 0.00 4.40
5895 7674 1.278637 GGTTGTCAACACGAAGGCG 59.721 57.895 17.29 0.00 44.79 5.52
5896 7675 0.307760 CTGGTTGTCAACACGAAGGC 59.692 55.000 17.29 0.00 0.00 4.35
5897 7676 1.663695 ACTGGTTGTCAACACGAAGG 58.336 50.000 17.29 3.40 0.00 3.46
5898 7677 2.031683 GGAACTGGTTGTCAACACGAAG 59.968 50.000 17.29 10.69 0.00 3.79
5925 7712 2.552315 CCTAACGGAGCAAGCAGAAAAA 59.448 45.455 0.00 0.00 0.00 1.94
5926 7713 2.151202 CCTAACGGAGCAAGCAGAAAA 58.849 47.619 0.00 0.00 0.00 2.29
5930 7717 1.734465 CTTTCCTAACGGAGCAAGCAG 59.266 52.381 0.00 0.00 41.25 4.24
5980 7812 4.180057 AGATTCAAACGATCAGCTGAGTC 58.820 43.478 22.96 17.13 0.00 3.36
5984 7816 4.431809 AGAGAGATTCAAACGATCAGCTG 58.568 43.478 7.63 7.63 0.00 4.24
6020 7852 7.032580 CGTATTCATATCTCCTTTAGAGCAGG 58.967 42.308 0.00 0.00 42.90 4.85
6025 7857 7.152645 GCCAACGTATTCATATCTCCTTTAGA 58.847 38.462 0.00 0.00 39.02 2.10
6043 7875 2.032799 CGTTATGCCATTATGCCAACGT 59.967 45.455 10.12 0.00 40.66 3.99
6075 7907 4.033129 CGTGGAAAAACGCTTCGGATATTA 59.967 41.667 0.00 0.00 36.65 0.98
6101 7933 2.262471 CTGCTGTTCTCGGCCATTGC 62.262 60.000 2.24 0.00 44.62 3.56
6102 7934 0.674581 TCTGCTGTTCTCGGCCATTG 60.675 55.000 2.24 0.00 44.62 2.82
6103 7935 0.036732 TTCTGCTGTTCTCGGCCATT 59.963 50.000 2.24 0.00 44.62 3.16
6104 7936 0.392193 CTTCTGCTGTTCTCGGCCAT 60.392 55.000 2.24 0.00 44.62 4.40
6105 7937 1.004560 CTTCTGCTGTTCTCGGCCA 60.005 57.895 2.24 0.00 44.62 5.36
6106 7938 2.394563 GCTTCTGCTGTTCTCGGCC 61.395 63.158 0.00 0.00 44.62 6.13
6107 7939 1.023513 ATGCTTCTGCTGTTCTCGGC 61.024 55.000 0.00 0.00 45.37 5.54
6108 7940 0.725686 CATGCTTCTGCTGTTCTCGG 59.274 55.000 0.00 0.00 40.48 4.63
6109 7941 0.725686 CCATGCTTCTGCTGTTCTCG 59.274 55.000 0.00 0.00 40.48 4.04
6110 7942 0.450983 GCCATGCTTCTGCTGTTCTC 59.549 55.000 0.00 0.00 40.48 2.87
6111 7943 0.251033 TGCCATGCTTCTGCTGTTCT 60.251 50.000 0.00 0.00 40.48 3.01
6112 7944 0.599558 TTGCCATGCTTCTGCTGTTC 59.400 50.000 0.00 0.00 40.48 3.18
6113 7945 0.316204 GTTGCCATGCTTCTGCTGTT 59.684 50.000 0.00 0.00 40.48 3.16
6114 7946 0.538977 AGTTGCCATGCTTCTGCTGT 60.539 50.000 0.00 0.00 40.48 4.40
6115 7947 0.601558 AAGTTGCCATGCTTCTGCTG 59.398 50.000 0.00 0.00 40.48 4.41
6116 7948 1.335145 AAAGTTGCCATGCTTCTGCT 58.665 45.000 0.00 0.00 40.48 4.24
6117 7949 3.248266 CTTAAAGTTGCCATGCTTCTGC 58.752 45.455 0.00 0.00 40.20 4.26
6118 7950 3.057033 AGCTTAAAGTTGCCATGCTTCTG 60.057 43.478 0.00 0.00 0.00 3.02
6119 7951 3.160269 AGCTTAAAGTTGCCATGCTTCT 58.840 40.909 0.00 0.00 0.00 2.85
6120 7952 3.582714 AGCTTAAAGTTGCCATGCTTC 57.417 42.857 0.00 0.00 0.00 3.86
6121 7953 3.575687 AGAAGCTTAAAGTTGCCATGCTT 59.424 39.130 0.00 0.00 41.18 3.91
6122 7954 3.160269 AGAAGCTTAAAGTTGCCATGCT 58.840 40.909 0.00 0.00 0.00 3.79
6123 7955 3.505836 GAGAAGCTTAAAGTTGCCATGC 58.494 45.455 0.00 0.00 0.00 4.06
6124 7956 3.119352 GGGAGAAGCTTAAAGTTGCCATG 60.119 47.826 0.00 0.00 0.00 3.66
6125 7957 3.092301 GGGAGAAGCTTAAAGTTGCCAT 58.908 45.455 0.00 0.00 0.00 4.40
6126 7958 2.108250 AGGGAGAAGCTTAAAGTTGCCA 59.892 45.455 0.00 0.00 0.00 4.92
6127 7959 2.796557 AGGGAGAAGCTTAAAGTTGCC 58.203 47.619 0.00 0.00 0.00 4.52
6128 7960 4.324267 TGTAGGGAGAAGCTTAAAGTTGC 58.676 43.478 0.00 0.00 0.00 4.17
6129 7961 5.181433 GGTTGTAGGGAGAAGCTTAAAGTTG 59.819 44.000 0.00 0.00 0.00 3.16
6130 7962 5.073280 AGGTTGTAGGGAGAAGCTTAAAGTT 59.927 40.000 0.00 0.00 33.15 2.66
6131 7963 4.597940 AGGTTGTAGGGAGAAGCTTAAAGT 59.402 41.667 0.00 0.00 33.15 2.66
6132 7964 5.167303 AGGTTGTAGGGAGAAGCTTAAAG 57.833 43.478 0.00 0.00 33.15 1.85
6133 7965 6.442564 TGATAGGTTGTAGGGAGAAGCTTAAA 59.557 38.462 0.00 0.00 37.75 1.52
6134 7966 5.962031 TGATAGGTTGTAGGGAGAAGCTTAA 59.038 40.000 0.00 0.00 37.75 1.85
6135 7967 5.525484 TGATAGGTTGTAGGGAGAAGCTTA 58.475 41.667 0.00 0.00 37.75 3.09
6136 7968 4.362677 TGATAGGTTGTAGGGAGAAGCTT 58.637 43.478 0.00 0.00 37.75 3.74
6137 7969 3.995636 TGATAGGTTGTAGGGAGAAGCT 58.004 45.455 0.00 0.00 39.71 3.74
6138 7970 4.698575 CTTGATAGGTTGTAGGGAGAAGC 58.301 47.826 0.00 0.00 0.00 3.86
6139 7971 4.698575 GCTTGATAGGTTGTAGGGAGAAG 58.301 47.826 0.00 0.00 0.00 2.85
6140 7972 3.132289 CGCTTGATAGGTTGTAGGGAGAA 59.868 47.826 0.00 0.00 0.00 2.87
6141 7973 2.693591 CGCTTGATAGGTTGTAGGGAGA 59.306 50.000 0.00 0.00 0.00 3.71
6142 7974 2.693591 TCGCTTGATAGGTTGTAGGGAG 59.306 50.000 0.00 0.00 0.00 4.30
6143 7975 2.429610 GTCGCTTGATAGGTTGTAGGGA 59.570 50.000 0.00 0.00 0.00 4.20
6144 7976 2.167693 TGTCGCTTGATAGGTTGTAGGG 59.832 50.000 0.00 0.00 0.00 3.53
6145 7977 3.119101 AGTGTCGCTTGATAGGTTGTAGG 60.119 47.826 0.00 0.00 0.00 3.18
6146 7978 4.111375 AGTGTCGCTTGATAGGTTGTAG 57.889 45.455 0.00 0.00 0.00 2.74
6147 7979 4.142315 GGTAGTGTCGCTTGATAGGTTGTA 60.142 45.833 0.00 0.00 0.00 2.41
6148 7980 3.368116 GGTAGTGTCGCTTGATAGGTTGT 60.368 47.826 0.00 0.00 0.00 3.32
6149 7981 3.119101 AGGTAGTGTCGCTTGATAGGTTG 60.119 47.826 0.00 0.00 0.00 3.77
6150 7982 3.097614 AGGTAGTGTCGCTTGATAGGTT 58.902 45.455 0.00 0.00 0.00 3.50
6151 7983 2.427453 CAGGTAGTGTCGCTTGATAGGT 59.573 50.000 0.00 0.00 0.00 3.08
6152 7984 2.799917 GCAGGTAGTGTCGCTTGATAGG 60.800 54.545 0.00 0.00 0.00 2.57
6153 7985 2.159240 TGCAGGTAGTGTCGCTTGATAG 60.159 50.000 0.00 0.00 0.00 2.08
6154 7986 1.822371 TGCAGGTAGTGTCGCTTGATA 59.178 47.619 0.00 0.00 0.00 2.15
6155 7987 0.608130 TGCAGGTAGTGTCGCTTGAT 59.392 50.000 0.00 0.00 0.00 2.57
6156 7988 0.319555 GTGCAGGTAGTGTCGCTTGA 60.320 55.000 0.00 0.00 0.00 3.02
6157 7989 0.599991 TGTGCAGGTAGTGTCGCTTG 60.600 55.000 0.00 0.00 0.00 4.01
6158 7990 0.600255 GTGTGCAGGTAGTGTCGCTT 60.600 55.000 0.00 0.00 0.00 4.68
6159 7991 1.006102 GTGTGCAGGTAGTGTCGCT 60.006 57.895 0.00 0.00 0.00 4.93
6160 7992 0.878523 TTGTGTGCAGGTAGTGTCGC 60.879 55.000 0.00 0.00 0.00 5.19
6161 7993 1.795768 ATTGTGTGCAGGTAGTGTCG 58.204 50.000 0.00 0.00 0.00 4.35



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.