Multiple sequence alignment - TraesCS7D01G335500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G335500 chr7D 100.000 4416 0 0 1 4416 426846162 426850577 0.000000e+00 8155.0
1 TraesCS7D01G335500 chr7D 92.500 40 2 1 3521 3560 168245191 168245229 6.170000e-04 56.5
2 TraesCS7D01G335500 chr7A 93.221 3791 156 46 1 3725 506133142 506129387 0.000000e+00 5483.0
3 TraesCS7D01G335500 chr7A 93.220 354 22 2 4064 4416 506129200 506128848 1.820000e-143 520.0
4 TraesCS7D01G335500 chr7A 92.337 261 10 5 3822 4074 506129388 506129130 3.250000e-96 363.0
5 TraesCS7D01G335500 chr7A 95.000 80 4 0 3124 3203 506130064 506129985 4.640000e-25 126.0
6 TraesCS7D01G335500 chr7B 97.016 2681 60 10 892 3560 444475030 444477702 0.000000e+00 4490.0
7 TraesCS7D01G335500 chr7B 88.363 739 47 18 1 723 444474011 444474726 0.000000e+00 852.0
8 TraesCS7D01G335500 chr7B 94.872 351 18 0 4064 4414 444478079 444478429 2.320000e-152 549.0
9 TraesCS7D01G335500 chr7B 94.340 159 7 2 3563 3720 444477740 444477897 4.410000e-60 243.0
10 TraesCS7D01G335500 chr7B 95.082 122 3 2 3797 3916 444477895 444478015 5.830000e-44 189.0
11 TraesCS7D01G335500 chr7B 94.872 117 6 0 725 841 444474813 444474929 2.710000e-42 183.0
12 TraesCS7D01G335500 chr7B 90.076 131 5 3 3952 4074 444478019 444478149 3.530000e-36 163.0
13 TraesCS7D01G335500 chr7B 95.122 41 2 0 3521 3561 65667618 65667578 1.030000e-06 65.8
14 TraesCS7D01G335500 chr6B 84.647 1218 155 13 1316 2522 688780999 688779803 0.000000e+00 1184.0
15 TraesCS7D01G335500 chr6A 89.211 621 67 0 1902 2522 599165860 599166480 0.000000e+00 776.0
16 TraesCS7D01G335500 chr6A 83.432 507 61 10 1327 1826 599165336 599165826 2.420000e-122 449.0
17 TraesCS7D01G335500 chr6A 79.722 360 35 15 4064 4416 46977425 46977753 4.440000e-55 226.0
18 TraesCS7D01G335500 chr6D 89.796 588 57 2 1938 2522 453170711 453171298 0.000000e+00 750.0
19 TraesCS7D01G335500 chr6D 82.775 627 74 13 1325 1940 453170016 453170619 3.020000e-146 529.0
20 TraesCS7D01G335500 chr6D 95.238 42 2 0 3521 3562 84071832 84071873 2.850000e-07 67.6
21 TraesCS7D01G335500 chr4B 81.748 389 55 5 1929 2315 140892722 140893096 1.190000e-80 311.0
22 TraesCS7D01G335500 chr4B 85.366 287 36 3 4127 4411 438150088 438149806 4.320000e-75 292.0
23 TraesCS7D01G335500 chr4B 100.000 34 0 0 3521 3554 10798423 10798456 3.690000e-06 63.9
24 TraesCS7D01G335500 chr3A 88.776 98 8 2 4079 4174 737369675 737369579 2.790000e-22 117.0
25 TraesCS7D01G335500 chr5B 100.000 50 0 0 3997 4046 311077576 311077625 4.700000e-15 93.5
26 TraesCS7D01G335500 chr4A 97.500 40 1 0 3521 3560 627361986 627361947 7.930000e-08 69.4
27 TraesCS7D01G335500 chr3D 97.500 40 1 0 3521 3560 462811558 462811519 7.930000e-08 69.4
28 TraesCS7D01G335500 chr2A 92.683 41 2 1 3521 3561 465367000 465366961 1.720000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G335500 chr7D 426846162 426850577 4415 False 8155.000000 8155 100.000000 1 4416 1 chr7D.!!$F2 4415
1 TraesCS7D01G335500 chr7A 506128848 506133142 4294 True 1623.000000 5483 93.444500 1 4416 4 chr7A.!!$R1 4415
2 TraesCS7D01G335500 chr7B 444474011 444478429 4418 False 952.714286 4490 93.517286 1 4414 7 chr7B.!!$F1 4413
3 TraesCS7D01G335500 chr6B 688779803 688780999 1196 True 1184.000000 1184 84.647000 1316 2522 1 chr6B.!!$R1 1206
4 TraesCS7D01G335500 chr6A 599165336 599166480 1144 False 612.500000 776 86.321500 1327 2522 2 chr6A.!!$F2 1195
5 TraesCS7D01G335500 chr6D 453170016 453171298 1282 False 639.500000 750 86.285500 1325 2522 2 chr6D.!!$F2 1197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 644 0.178990 AGGAACTTGAACCCCTGTGC 60.179 55.0 0.0 0.0 27.25 4.57 F
604 645 0.178990 GGAACTTGAACCCCTGTGCT 60.179 55.0 0.0 0.0 0.00 4.40 F
1988 2284 0.382158 CTGAGATGGTAGCGAGCGAA 59.618 55.0 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2096 1.064003 TGGCTCAGGTTCTTTAGGCA 58.936 50.0 0.0 0.0 41.62 4.75 R
2227 2526 1.094785 ACGCACCAAATCAGCATACC 58.905 50.0 0.0 0.0 0.00 2.73 R
3748 4089 0.035881 AGGCATGGATGATAGGCACG 59.964 55.0 0.0 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.409802 CCATCCTGGCAGCTGAAGAAT 60.410 52.381 20.43 0.00 0.00 2.40
38 39 1.160137 GGCAGCTGAAGAATCAACGT 58.840 50.000 20.43 0.00 34.49 3.99
85 86 1.521681 GTGCTACCACAGGCGATCC 60.522 63.158 0.00 0.00 41.67 3.36
138 139 1.676529 AGAATCATCATCGGTCGTCGT 59.323 47.619 0.00 0.00 40.32 4.34
159 160 1.486310 TGGACCATGAAATCTCCGAGG 59.514 52.381 0.00 0.00 0.00 4.63
263 264 1.542187 GGATTAGGGCGTCGGGCTAT 61.542 60.000 0.00 0.00 42.94 2.97
281 282 1.588239 ATCCCCTGATCAGCACAAGA 58.412 50.000 17.76 8.72 0.00 3.02
284 285 1.681166 CCCCTGATCAGCACAAGAAGG 60.681 57.143 17.76 9.99 0.00 3.46
285 286 1.280133 CCCTGATCAGCACAAGAAGGA 59.720 52.381 17.76 0.00 0.00 3.36
286 287 2.290514 CCCTGATCAGCACAAGAAGGAA 60.291 50.000 17.76 0.00 0.00 3.36
311 318 4.047125 GCTGGCACCCTTGGGCTA 62.047 66.667 5.46 0.00 0.00 3.93
336 353 2.965572 CCATGCTGTGGTTTAATGGG 57.034 50.000 1.05 0.00 43.44 4.00
340 357 3.527507 TGCTGTGGTTTAATGGGGTTA 57.472 42.857 0.00 0.00 0.00 2.85
350 367 7.177041 GTGGTTTAATGGGGTTACATTGTAAGA 59.823 37.037 9.49 0.00 40.97 2.10
356 373 8.747538 AATGGGGTTACATTGTAAGATAAGAC 57.252 34.615 9.49 0.00 39.47 3.01
359 376 7.990886 TGGGGTTACATTGTAAGATAAGACATC 59.009 37.037 9.49 0.00 0.00 3.06
395 418 3.681961 AATTTCATGCGCGGCGGTG 62.682 57.895 25.03 0.00 0.00 4.94
472 502 4.337555 CCCTTGAGTAGATTTGCATCCTTG 59.662 45.833 0.00 0.00 0.00 3.61
538 571 3.259902 GGACTTTCGGTAATCACCTGTC 58.740 50.000 0.00 0.00 43.33 3.51
555 588 7.153315 TCACCTGTCGTTGTAATGTTTGTATA 58.847 34.615 0.00 0.00 0.00 1.47
590 631 3.130693 GTGCCGATGTAGAAGTAGGAACT 59.869 47.826 0.00 0.00 46.37 3.01
599 640 3.599348 AGAAGTAGGAACTTGAACCCCT 58.401 45.455 0.00 0.00 46.09 4.79
600 641 3.328050 AGAAGTAGGAACTTGAACCCCTG 59.672 47.826 0.00 0.00 46.09 4.45
601 642 2.702748 AGTAGGAACTTGAACCCCTGT 58.297 47.619 0.00 0.00 41.75 4.00
602 643 2.372172 AGTAGGAACTTGAACCCCTGTG 59.628 50.000 0.00 0.00 41.75 3.66
603 644 0.178990 AGGAACTTGAACCCCTGTGC 60.179 55.000 0.00 0.00 27.25 4.57
604 645 0.178990 GGAACTTGAACCCCTGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
605 646 1.692411 GAACTTGAACCCCTGTGCTT 58.308 50.000 0.00 0.00 0.00 3.91
606 647 1.338020 GAACTTGAACCCCTGTGCTTG 59.662 52.381 0.00 0.00 0.00 4.01
608 649 1.242076 CTTGAACCCCTGTGCTTGAG 58.758 55.000 0.00 0.00 0.00 3.02
609 650 0.843309 TTGAACCCCTGTGCTTGAGA 59.157 50.000 0.00 0.00 0.00 3.27
610 651 0.843309 TGAACCCCTGTGCTTGAGAA 59.157 50.000 0.00 0.00 0.00 2.87
611 652 1.202806 TGAACCCCTGTGCTTGAGAAG 60.203 52.381 0.00 0.00 0.00 2.85
613 654 1.140312 ACCCCTGTGCTTGAGAAGAA 58.860 50.000 0.00 0.00 0.00 2.52
614 655 1.494721 ACCCCTGTGCTTGAGAAGAAA 59.505 47.619 0.00 0.00 0.00 2.52
615 656 2.157738 CCCCTGTGCTTGAGAAGAAAG 58.842 52.381 0.00 0.00 0.00 2.62
624 665 4.294232 GCTTGAGAAGAAAGCTTGAAACC 58.706 43.478 0.00 0.00 45.31 3.27
625 666 4.794329 GCTTGAGAAGAAAGCTTGAAACCC 60.794 45.833 0.00 0.00 45.31 4.11
626 667 3.222603 TGAGAAGAAAGCTTGAAACCCC 58.777 45.455 0.00 0.00 33.61 4.95
627 668 3.117512 TGAGAAGAAAGCTTGAAACCCCT 60.118 43.478 0.00 0.00 33.61 4.79
628 669 3.225940 AGAAGAAAGCTTGAAACCCCTG 58.774 45.455 0.00 0.00 33.61 4.45
629 670 3.117512 AGAAGAAAGCTTGAAACCCCTGA 60.118 43.478 0.00 0.00 33.61 3.86
630 671 3.312736 AGAAAGCTTGAAACCCCTGAA 57.687 42.857 0.00 0.00 0.00 3.02
631 672 3.225940 AGAAAGCTTGAAACCCCTGAAG 58.774 45.455 0.00 0.00 0.00 3.02
693 734 0.387112 TGCTTGAATTTTCAGCGCGG 60.387 50.000 8.83 0.00 38.61 6.46
719 760 7.537649 GTCTTGCAACGATCGTCTGATTATATA 59.462 37.037 22.98 0.00 34.09 0.86
791 917 2.215196 GCTACGTGACCAAACCAAAGA 58.785 47.619 0.00 0.00 0.00 2.52
828 954 2.747855 GCAGCAGTACACCAGCCC 60.748 66.667 0.00 0.00 0.00 5.19
843 969 3.277715 CCAGCCCAAATTGTGTGTTTTT 58.722 40.909 0.00 0.00 0.00 1.94
845 971 4.190772 CAGCCCAAATTGTGTGTTTTTCT 58.809 39.130 0.00 0.00 0.00 2.52
846 972 4.635324 CAGCCCAAATTGTGTGTTTTTCTT 59.365 37.500 0.00 0.00 0.00 2.52
847 973 5.123661 CAGCCCAAATTGTGTGTTTTTCTTT 59.876 36.000 0.00 0.00 0.00 2.52
848 974 5.709631 AGCCCAAATTGTGTGTTTTTCTTTT 59.290 32.000 0.00 0.00 0.00 2.27
849 975 6.208402 AGCCCAAATTGTGTGTTTTTCTTTTT 59.792 30.769 0.00 0.00 0.00 1.94
850 976 6.526325 GCCCAAATTGTGTGTTTTTCTTTTTC 59.474 34.615 0.00 0.00 0.00 2.29
910 1086 2.632987 AGGGAGTTGTTTAGCGTTGT 57.367 45.000 0.00 0.00 0.00 3.32
1027 1208 2.550180 GCACACCTCTTTCCTGAGAAAC 59.450 50.000 0.00 0.00 37.07 2.78
1067 1248 3.787001 GGCGGAACCCTAGCAGCT 61.787 66.667 0.00 0.00 0.00 4.24
1830 2029 2.035832 CAGGTGGAAACAAATGGTGGTC 59.964 50.000 0.00 0.00 46.06 4.02
1839 2038 1.172180 AAATGGTGGTCGTGCTGGTG 61.172 55.000 0.00 0.00 0.00 4.17
1854 2053 2.985847 GTGGCCAGGCTGTTCCAC 60.986 66.667 28.49 28.49 41.66 4.02
1894 2096 2.290577 GCTCAGATGGTTCCAAGGACTT 60.291 50.000 0.00 0.00 0.00 3.01
1895 2097 3.341823 CTCAGATGGTTCCAAGGACTTG 58.658 50.000 5.09 5.09 40.13 3.16
1988 2284 0.382158 CTGAGATGGTAGCGAGCGAA 59.618 55.000 0.00 0.00 0.00 4.70
2021 2320 4.761235 AGATTTCACAATGAGCACACAG 57.239 40.909 0.00 0.00 0.00 3.66
2027 2326 4.002982 TCACAATGAGCACACAGGATTAC 58.997 43.478 0.00 0.00 0.00 1.89
2318 2617 6.872585 TCCAAAAGGGATCAAATTATGCTT 57.127 33.333 0.00 0.00 42.15 3.91
2476 2775 6.405065 GCAGCAGATTCATCCTTCATAAAACA 60.405 38.462 0.00 0.00 0.00 2.83
2647 2946 4.788617 AGTAATGGGTAAGACCAAGGATGT 59.211 41.667 0.00 0.00 45.13 3.06
2729 3028 3.353836 GTTCGCAGCTTTCCGGCA 61.354 61.111 0.00 0.00 34.00 5.69
3050 3349 2.501723 TGAGAAAGAGTACCATCAGGCC 59.498 50.000 0.00 0.00 39.06 5.19
3095 3394 8.106462 TCAAATGAAGATGGACACTTGGTATTA 58.894 33.333 0.00 0.00 0.00 0.98
3359 3662 4.502259 GGCATTGGTTGTGTAATTGGTTCA 60.502 41.667 0.00 0.00 0.00 3.18
3360 3663 5.237048 GCATTGGTTGTGTAATTGGTTCAT 58.763 37.500 0.00 0.00 0.00 2.57
3361 3664 5.348451 GCATTGGTTGTGTAATTGGTTCATC 59.652 40.000 0.00 0.00 0.00 2.92
3460 3764 0.467804 TGTGTTGTAGCTGGTCTGCA 59.532 50.000 0.00 0.00 35.56 4.41
3532 3836 3.495629 GGTTGAAACGTACTCCCTCCTTT 60.496 47.826 0.00 0.00 0.00 3.11
3534 3838 2.301009 TGAAACGTACTCCCTCCTTTCC 59.699 50.000 0.00 0.00 0.00 3.13
3569 3873 3.955524 TTTTTGACACTGGGGGAGTAA 57.044 42.857 0.00 0.00 31.73 2.24
3570 3874 3.955524 TTTTGACACTGGGGGAGTAAA 57.044 42.857 0.00 0.00 31.73 2.01
3571 3875 4.463050 TTTTGACACTGGGGGAGTAAAT 57.537 40.909 0.00 0.00 31.73 1.40
3572 3876 3.713826 TTGACACTGGGGGAGTAAATC 57.286 47.619 0.00 0.00 31.73 2.17
3609 3950 4.223700 AGGTCAACATGCAGTCTCTTCATA 59.776 41.667 0.00 0.00 0.00 2.15
3614 3955 8.025445 GTCAACATGCAGTCTCTTCATATTTTT 58.975 33.333 0.00 0.00 0.00 1.94
3644 3985 4.554330 GCTATACAGCTTGCTTGCATCTTC 60.554 45.833 0.00 0.00 44.93 2.87
3676 4017 4.261994 CGTCAATCCCAACCAGAAACATTT 60.262 41.667 0.00 0.00 0.00 2.32
3723 4064 3.325135 CCATTCACCTCTACTATGGTCCC 59.675 52.174 0.00 0.00 33.75 4.46
3724 4065 3.769189 TTCACCTCTACTATGGTCCCA 57.231 47.619 0.00 0.00 33.75 4.37
3725 4066 3.993658 TCACCTCTACTATGGTCCCAT 57.006 47.619 3.94 3.94 40.19 4.00
3728 4069 3.576118 CACCTCTACTATGGTCCCATGAG 59.424 52.174 9.11 6.72 37.82 2.90
3729 4070 2.564947 CCTCTACTATGGTCCCATGAGC 59.435 54.545 9.11 0.00 37.82 4.26
3730 4071 2.230025 CTCTACTATGGTCCCATGAGCG 59.770 54.545 9.11 0.00 41.98 5.03
3731 4072 1.273606 CTACTATGGTCCCATGAGCGG 59.726 57.143 9.11 0.00 41.98 5.52
3732 4073 1.302033 CTATGGTCCCATGAGCGGC 60.302 63.158 9.11 0.00 41.98 6.53
3733 4074 2.738213 CTATGGTCCCATGAGCGGCC 62.738 65.000 9.11 0.00 41.98 6.13
3735 4076 4.554036 GGTCCCATGAGCGGCCTC 62.554 72.222 0.00 0.00 38.62 4.70
3761 4102 3.647824 GCAGCGTGCCTATCATCC 58.352 61.111 0.00 0.00 37.42 3.51
3762 4103 1.227645 GCAGCGTGCCTATCATCCA 60.228 57.895 0.00 0.00 37.42 3.41
3763 4104 0.604780 GCAGCGTGCCTATCATCCAT 60.605 55.000 0.00 0.00 37.42 3.41
3764 4105 1.154197 CAGCGTGCCTATCATCCATG 58.846 55.000 0.00 0.00 0.00 3.66
3765 4106 0.604780 AGCGTGCCTATCATCCATGC 60.605 55.000 0.00 0.00 40.76 4.06
3766 4107 1.580845 GCGTGCCTATCATCCATGCC 61.581 60.000 0.00 0.00 35.91 4.40
3767 4108 0.035881 CGTGCCTATCATCCATGCCT 59.964 55.000 0.00 0.00 0.00 4.75
3768 4109 1.818642 GTGCCTATCATCCATGCCTC 58.181 55.000 0.00 0.00 0.00 4.70
3769 4110 1.350351 GTGCCTATCATCCATGCCTCT 59.650 52.381 0.00 0.00 0.00 3.69
3770 4111 1.350019 TGCCTATCATCCATGCCTCTG 59.650 52.381 0.00 0.00 0.00 3.35
3771 4112 1.949547 GCCTATCATCCATGCCTCTGC 60.950 57.143 0.00 0.00 38.26 4.26
3772 4113 1.629353 CCTATCATCCATGCCTCTGCT 59.371 52.381 0.00 0.00 38.71 4.24
3773 4114 2.040012 CCTATCATCCATGCCTCTGCTT 59.960 50.000 0.00 0.00 38.71 3.91
3774 4115 1.982660 ATCATCCATGCCTCTGCTTG 58.017 50.000 0.00 0.00 41.13 4.01
3775 4116 0.913924 TCATCCATGCCTCTGCTTGA 59.086 50.000 2.40 0.00 43.40 3.02
3776 4117 1.022735 CATCCATGCCTCTGCTTGAC 58.977 55.000 2.40 0.00 43.40 3.18
3777 4118 0.106819 ATCCATGCCTCTGCTTGACC 60.107 55.000 2.40 0.00 43.40 4.02
3778 4119 1.203441 TCCATGCCTCTGCTTGACCT 61.203 55.000 2.40 0.00 43.40 3.85
3779 4120 1.030488 CCATGCCTCTGCTTGACCTG 61.030 60.000 2.40 0.00 43.40 4.00
3780 4121 1.378250 ATGCCTCTGCTTGACCTGC 60.378 57.895 0.00 0.00 38.71 4.85
3781 4122 2.033141 GCCTCTGCTTGACCTGCA 59.967 61.111 0.00 0.00 38.81 4.41
3794 4135 2.913463 CCTGCAGGTCCATCTCTCT 58.087 57.895 25.53 0.00 0.00 3.10
3795 4136 0.752054 CCTGCAGGTCCATCTCTCTC 59.248 60.000 25.53 0.00 0.00 3.20
3796 4137 1.688942 CCTGCAGGTCCATCTCTCTCT 60.689 57.143 25.53 0.00 0.00 3.10
3797 4138 1.409790 CTGCAGGTCCATCTCTCTCTG 59.590 57.143 5.57 0.00 0.00 3.35
3798 4139 0.752054 GCAGGTCCATCTCTCTCTGG 59.248 60.000 0.00 0.00 0.00 3.86
3799 4140 1.687682 GCAGGTCCATCTCTCTCTGGA 60.688 57.143 0.00 0.00 39.23 3.86
3800 4141 2.961510 CAGGTCCATCTCTCTCTGGAT 58.038 52.381 0.00 0.00 43.20 3.41
3801 4142 3.307506 CAGGTCCATCTCTCTCTGGATT 58.692 50.000 0.00 0.00 43.20 3.01
3802 4143 3.710677 CAGGTCCATCTCTCTCTGGATTT 59.289 47.826 0.00 0.00 43.20 2.17
3803 4144 3.710677 AGGTCCATCTCTCTCTGGATTTG 59.289 47.826 0.00 0.00 43.20 2.32
3804 4145 3.181456 GGTCCATCTCTCTCTGGATTTGG 60.181 52.174 0.00 0.00 43.20 3.28
3805 4146 3.044156 TCCATCTCTCTCTGGATTTGGG 58.956 50.000 0.00 0.00 36.63 4.12
3869 4210 2.499289 GTTCAAGGAGAGGCAGATCTGA 59.501 50.000 27.04 0.00 0.00 3.27
3950 4291 7.391148 AACACATATCAAATTCCAGGTGTAC 57.609 36.000 0.00 0.00 37.26 2.90
4036 4377 5.836821 TGCTATCGTTTGTCTCTGTAGAT 57.163 39.130 0.00 0.00 33.30 1.98
4046 4387 7.571983 CGTTTGTCTCTGTAGATTTTTGCTCAT 60.572 37.037 0.00 0.00 33.30 2.90
4047 4388 6.732531 TGTCTCTGTAGATTTTTGCTCATG 57.267 37.500 0.00 0.00 33.30 3.07
4048 4389 5.122869 TGTCTCTGTAGATTTTTGCTCATGC 59.877 40.000 0.00 0.00 35.23 4.06
4049 4390 5.353678 GTCTCTGTAGATTTTTGCTCATGCT 59.646 40.000 0.00 0.00 35.51 3.79
4050 4391 5.942236 TCTCTGTAGATTTTTGCTCATGCTT 59.058 36.000 0.00 0.00 40.48 3.91
4051 4392 5.946298 TCTGTAGATTTTTGCTCATGCTTG 58.054 37.500 0.00 0.00 40.48 4.01
4052 4393 5.474532 TCTGTAGATTTTTGCTCATGCTTGT 59.525 36.000 0.00 0.00 40.48 3.16
4053 4394 5.702865 TGTAGATTTTTGCTCATGCTTGTC 58.297 37.500 0.00 0.00 40.48 3.18
4054 4395 5.474532 TGTAGATTTTTGCTCATGCTTGTCT 59.525 36.000 0.00 0.00 40.48 3.41
4055 4396 5.056894 AGATTTTTGCTCATGCTTGTCTC 57.943 39.130 0.00 0.00 40.48 3.36
4056 4397 4.765856 AGATTTTTGCTCATGCTTGTCTCT 59.234 37.500 0.00 0.00 40.48 3.10
4057 4398 3.909776 TTTTGCTCATGCTTGTCTCTG 57.090 42.857 0.00 0.00 40.48 3.35
4058 4399 2.556144 TTGCTCATGCTTGTCTCTGT 57.444 45.000 0.00 0.00 40.48 3.41
4059 4400 3.683365 TTGCTCATGCTTGTCTCTGTA 57.317 42.857 0.00 0.00 40.48 2.74
4060 4401 3.242549 TGCTCATGCTTGTCTCTGTAG 57.757 47.619 0.00 0.00 40.48 2.74
4061 4402 2.827921 TGCTCATGCTTGTCTCTGTAGA 59.172 45.455 0.00 0.00 40.48 2.59
4062 4403 3.450096 TGCTCATGCTTGTCTCTGTAGAT 59.550 43.478 0.00 0.00 40.48 1.98
4063 4404 4.081254 TGCTCATGCTTGTCTCTGTAGATT 60.081 41.667 0.00 0.00 40.48 2.40
4064 4405 4.874966 GCTCATGCTTGTCTCTGTAGATTT 59.125 41.667 0.00 0.00 33.17 2.17
4065 4406 5.353678 GCTCATGCTTGTCTCTGTAGATTTT 59.646 40.000 0.00 0.00 33.17 1.82
4066 4407 6.128063 GCTCATGCTTGTCTCTGTAGATTTTT 60.128 38.462 0.00 0.00 33.17 1.94
4067 4408 7.137490 TCATGCTTGTCTCTGTAGATTTTTG 57.863 36.000 0.00 0.00 33.30 2.44
4068 4409 5.362556 TGCTTGTCTCTGTAGATTTTTGC 57.637 39.130 0.00 0.00 33.30 3.68
4069 4410 5.065914 TGCTTGTCTCTGTAGATTTTTGCT 58.934 37.500 0.00 0.00 33.30 3.91
4070 4411 5.180117 TGCTTGTCTCTGTAGATTTTTGCTC 59.820 40.000 0.00 0.00 33.30 4.26
4071 4412 5.180117 GCTTGTCTCTGTAGATTTTTGCTCA 59.820 40.000 0.00 0.00 33.30 4.26
4072 4413 6.128063 GCTTGTCTCTGTAGATTTTTGCTCAT 60.128 38.462 0.00 0.00 33.30 2.90
4073 4414 6.732531 TGTCTCTGTAGATTTTTGCTCATG 57.267 37.500 0.00 0.00 33.30 3.07
4074 4415 5.122869 TGTCTCTGTAGATTTTTGCTCATGC 59.877 40.000 0.00 0.00 35.23 4.06
4075 4416 5.353678 GTCTCTGTAGATTTTTGCTCATGCT 59.646 40.000 0.00 0.00 35.51 3.79
4076 4417 5.942236 TCTCTGTAGATTTTTGCTCATGCTT 59.058 36.000 0.00 0.00 40.48 3.91
4077 4418 5.946298 TCTGTAGATTTTTGCTCATGCTTG 58.054 37.500 0.00 0.00 40.48 4.01
4078 4419 5.474532 TCTGTAGATTTTTGCTCATGCTTGT 59.525 36.000 0.00 0.00 40.48 3.16
4079 4420 5.702865 TGTAGATTTTTGCTCATGCTTGTC 58.297 37.500 0.00 0.00 40.48 3.18
4080 4421 5.474532 TGTAGATTTTTGCTCATGCTTGTCT 59.525 36.000 0.00 0.00 40.48 3.41
4081 4422 5.056894 AGATTTTTGCTCATGCTTGTCTC 57.943 39.130 0.00 0.00 40.48 3.36
4082 4423 4.765856 AGATTTTTGCTCATGCTTGTCTCT 59.234 37.500 0.00 0.00 40.48 3.10
4083 4424 3.909776 TTTTGCTCATGCTTGTCTCTG 57.090 42.857 0.00 0.00 40.48 3.35
4245 4586 6.285990 AGCTCAATCATTTGCCCAAATTATC 58.714 36.000 3.61 0.00 38.84 1.75
4334 4675 1.544314 GCTTCCCTGTTCTGCTTGAGT 60.544 52.381 0.00 0.00 0.00 3.41
4347 4688 0.320247 CTTGAGTCTGTTGCCTCGCT 60.320 55.000 0.00 0.00 0.00 4.93
4404 4745 1.277557 GATGACACTCTGCTCCAACCT 59.722 52.381 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.812235 TCTGGTAGTCTAACGACGCA 58.188 50.000 0.00 0.00 44.93 5.24
138 139 2.092968 CCTCGGAGATTTCATGGTCCAA 60.093 50.000 6.58 0.00 33.89 3.53
210 211 2.480416 CCTCTAACCTCGCTTGCAGTAG 60.480 54.545 0.00 0.00 0.00 2.57
263 264 1.280133 CTTCTTGTGCTGATCAGGGGA 59.720 52.381 23.89 0.00 0.00 4.81
267 268 4.698780 TCATTTCCTTCTTGTGCTGATCAG 59.301 41.667 18.84 18.84 0.00 2.90
281 282 0.112995 TGCCAGCCAGTCATTTCCTT 59.887 50.000 0.00 0.00 0.00 3.36
284 285 1.598701 GGGTGCCAGCCAGTCATTTC 61.599 60.000 8.34 0.00 35.40 2.17
285 286 1.607467 GGGTGCCAGCCAGTCATTT 60.607 57.895 8.34 0.00 35.40 2.32
286 287 2.036256 GGGTGCCAGCCAGTCATT 59.964 61.111 8.34 0.00 35.40 2.57
331 341 8.333235 TGTCTTATCTTACAATGTAACCCCATT 58.667 33.333 1.08 0.00 35.45 3.16
336 353 9.817809 TCAGATGTCTTATCTTACAATGTAACC 57.182 33.333 1.08 0.00 0.00 2.85
359 376 7.895975 TGAAATTCTGAACACATCTAGTCAG 57.104 36.000 0.00 0.46 0.00 3.51
365 382 4.673580 GCGCATGAAATTCTGAACACATCT 60.674 41.667 0.30 0.00 0.00 2.90
374 391 1.935917 CGCCGCGCATGAAATTCTG 60.936 57.895 8.75 0.00 0.00 3.02
472 502 1.240256 ATCATAGCCGGACGAGACTC 58.760 55.000 5.05 0.00 0.00 3.36
555 588 8.803397 TCTACATCGGCACATATAATACTACT 57.197 34.615 0.00 0.00 0.00 2.57
571 612 5.578005 TCAAGTTCCTACTTCTACATCGG 57.422 43.478 0.00 0.00 42.67 4.18
590 631 0.843309 TCTCAAGCACAGGGGTTCAA 59.157 50.000 0.00 0.00 34.30 2.69
602 643 4.294232 GGTTTCAAGCTTTCTTCTCAAGC 58.706 43.478 0.00 0.00 46.05 4.01
603 644 4.261783 GGGGTTTCAAGCTTTCTTCTCAAG 60.262 45.833 0.00 0.00 0.00 3.02
604 645 3.636764 GGGGTTTCAAGCTTTCTTCTCAA 59.363 43.478 0.00 0.00 0.00 3.02
605 646 3.117512 AGGGGTTTCAAGCTTTCTTCTCA 60.118 43.478 0.00 0.00 0.00 3.27
606 647 3.254411 CAGGGGTTTCAAGCTTTCTTCTC 59.746 47.826 0.00 0.00 0.00 2.87
608 649 3.222603 TCAGGGGTTTCAAGCTTTCTTC 58.777 45.455 0.00 0.00 0.00 2.87
609 650 3.312736 TCAGGGGTTTCAAGCTTTCTT 57.687 42.857 0.00 0.00 0.00 2.52
610 651 3.117512 TCTTCAGGGGTTTCAAGCTTTCT 60.118 43.478 0.00 0.00 0.00 2.52
611 652 3.222603 TCTTCAGGGGTTTCAAGCTTTC 58.777 45.455 0.00 0.00 0.00 2.62
613 654 3.160269 CATCTTCAGGGGTTTCAAGCTT 58.840 45.455 0.00 0.00 0.00 3.74
614 655 2.556114 CCATCTTCAGGGGTTTCAAGCT 60.556 50.000 0.00 0.00 0.00 3.74
615 656 1.821136 CCATCTTCAGGGGTTTCAAGC 59.179 52.381 0.00 0.00 0.00 4.01
616 657 1.821136 GCCATCTTCAGGGGTTTCAAG 59.179 52.381 0.00 0.00 0.00 3.02
617 658 1.428912 AGCCATCTTCAGGGGTTTCAA 59.571 47.619 0.00 0.00 0.00 2.69
618 659 1.004745 GAGCCATCTTCAGGGGTTTCA 59.995 52.381 0.00 0.00 34.46 2.69
619 660 1.756430 GAGCCATCTTCAGGGGTTTC 58.244 55.000 0.00 0.00 34.46 2.78
620 661 0.035056 CGAGCCATCTTCAGGGGTTT 60.035 55.000 0.00 0.00 34.46 3.27
621 662 0.909610 TCGAGCCATCTTCAGGGGTT 60.910 55.000 0.00 0.00 34.46 4.11
622 663 0.909610 TTCGAGCCATCTTCAGGGGT 60.910 55.000 0.00 0.00 37.66 4.95
623 664 0.179062 CTTCGAGCCATCTTCAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
624 665 0.826715 TCTTCGAGCCATCTTCAGGG 59.173 55.000 0.00 0.00 0.00 4.45
625 666 2.680312 TTCTTCGAGCCATCTTCAGG 57.320 50.000 0.00 0.00 0.00 3.86
626 667 2.351111 GCTTTCTTCGAGCCATCTTCAG 59.649 50.000 0.00 0.00 34.06 3.02
627 668 2.027745 AGCTTTCTTCGAGCCATCTTCA 60.028 45.455 0.00 0.00 41.03 3.02
628 669 2.626840 AGCTTTCTTCGAGCCATCTTC 58.373 47.619 0.00 0.00 41.03 2.87
629 670 2.746362 CAAGCTTTCTTCGAGCCATCTT 59.254 45.455 0.00 0.00 41.03 2.40
630 671 2.027745 TCAAGCTTTCTTCGAGCCATCT 60.028 45.455 0.00 0.00 41.03 2.90
631 672 2.350522 TCAAGCTTTCTTCGAGCCATC 58.649 47.619 0.00 0.00 41.03 3.51
667 708 1.885887 TGAAAATTCAAGCAGACGGGG 59.114 47.619 0.00 0.00 33.55 5.73
693 734 1.698165 TCAGACGATCGTTGCAAGAC 58.302 50.000 23.63 7.50 0.00 3.01
719 760 5.163385 CCACATGCTTTCATTCATGGGTATT 60.163 40.000 7.08 0.00 41.29 1.89
772 898 2.223377 GCTCTTTGGTTTGGTCACGTAG 59.777 50.000 0.00 0.00 0.00 3.51
779 905 2.551912 CGCGGCTCTTTGGTTTGGT 61.552 57.895 0.00 0.00 0.00 3.67
889 1035 3.284617 ACAACGCTAAACAACTCCCTTT 58.715 40.909 0.00 0.00 0.00 3.11
902 1078 1.134818 CAGGCCTGTATGACAACGCTA 60.135 52.381 25.53 0.00 0.00 4.26
910 1086 1.565759 AGAAATGGCAGGCCTGTATGA 59.434 47.619 32.81 15.18 36.94 2.15
1027 1208 1.818674 CGAGGGGATTTGGGTTTTCTG 59.181 52.381 0.00 0.00 0.00 3.02
1854 2053 1.303309 CGCTCATTTCCCTTAGCTGG 58.697 55.000 0.00 0.00 32.73 4.85
1894 2096 1.064003 TGGCTCAGGTTCTTTAGGCA 58.936 50.000 0.00 0.00 41.62 4.75
1895 2097 2.019984 CATGGCTCAGGTTCTTTAGGC 58.980 52.381 0.00 0.00 35.26 3.93
2021 2320 4.342772 GACACAATGACAATGCGTAATCC 58.657 43.478 0.00 0.00 0.00 3.01
2027 2326 1.135603 CCAGGACACAATGACAATGCG 60.136 52.381 0.00 0.00 0.00 4.73
2227 2526 1.094785 ACGCACCAAATCAGCATACC 58.905 50.000 0.00 0.00 0.00 2.73
2318 2617 8.527810 GGTATGGATTCCATTTTTGTAAACTCA 58.472 33.333 22.87 0.00 42.23 3.41
2476 2775 7.574021 TGCTCCTTGACTATATGGGAATAAT 57.426 36.000 0.00 0.00 0.00 1.28
2647 2946 3.830744 TTTCACTTCCTTGAACGAGGA 57.169 42.857 6.70 6.70 43.99 3.71
2729 3028 3.643792 AGTGCCTCAAGTCTCTAACAACT 59.356 43.478 0.00 0.00 0.00 3.16
2774 3073 4.474651 TGGAATCTTGCTCCATCTTTCCTA 59.525 41.667 0.00 0.00 38.07 2.94
3050 3349 2.867287 AGATGCAGATCTCAGACACG 57.133 50.000 0.00 0.00 33.20 4.49
3095 3394 3.509442 TCAGGGCATTTCACCATTCTTT 58.491 40.909 0.00 0.00 0.00 2.52
3359 3662 3.713248 TCAGCAAGTGGTCCAGATATGAT 59.287 43.478 0.00 0.00 0.00 2.45
3360 3663 3.106827 TCAGCAAGTGGTCCAGATATGA 58.893 45.455 0.00 0.00 0.00 2.15
3361 3664 3.201290 GTCAGCAAGTGGTCCAGATATG 58.799 50.000 0.00 0.00 0.00 1.78
3436 3740 2.299297 AGACCAGCTACAACACAGGTAC 59.701 50.000 0.00 0.00 0.00 3.34
3460 3764 4.036734 CACCTGAGCAACACAACAAATACT 59.963 41.667 0.00 0.00 0.00 2.12
3518 3822 4.957684 ATTATGGAAAGGAGGGAGTACG 57.042 45.455 0.00 0.00 0.00 3.67
3554 3858 4.224370 TGTAAGATTTACTCCCCCAGTGTC 59.776 45.833 1.24 0.00 36.43 3.67
3555 3859 4.172807 TGTAAGATTTACTCCCCCAGTGT 58.827 43.478 1.24 0.00 36.43 3.55
3556 3860 4.837093 TGTAAGATTTACTCCCCCAGTG 57.163 45.455 1.24 0.00 36.43 3.66
3557 3861 5.036916 TGATGTAAGATTTACTCCCCCAGT 58.963 41.667 1.24 0.00 39.41 4.00
3558 3862 5.630415 TGATGTAAGATTTACTCCCCCAG 57.370 43.478 1.24 0.00 0.00 4.45
3559 3863 5.669904 TCATGATGTAAGATTTACTCCCCCA 59.330 40.000 0.00 0.00 0.00 4.96
3560 3864 6.183361 ACTCATGATGTAAGATTTACTCCCCC 60.183 42.308 0.00 0.00 0.00 5.40
3561 3865 6.831976 ACTCATGATGTAAGATTTACTCCCC 58.168 40.000 0.00 0.00 0.00 4.81
3562 3866 8.091449 CCTACTCATGATGTAAGATTTACTCCC 58.909 40.741 0.00 0.00 0.00 4.30
3564 3868 9.685828 GACCTACTCATGATGTAAGATTTACTC 57.314 37.037 0.00 0.00 0.00 2.59
3565 3869 9.201989 TGACCTACTCATGATGTAAGATTTACT 57.798 33.333 0.00 0.00 0.00 2.24
3566 3870 9.817809 TTGACCTACTCATGATGTAAGATTTAC 57.182 33.333 0.00 0.00 0.00 2.01
3567 3871 9.817809 GTTGACCTACTCATGATGTAAGATTTA 57.182 33.333 0.00 0.00 0.00 1.40
3568 3872 8.321353 TGTTGACCTACTCATGATGTAAGATTT 58.679 33.333 0.00 0.00 0.00 2.17
3569 3873 7.851228 TGTTGACCTACTCATGATGTAAGATT 58.149 34.615 0.00 0.00 0.00 2.40
3570 3874 7.423844 TGTTGACCTACTCATGATGTAAGAT 57.576 36.000 0.00 0.00 0.00 2.40
3571 3875 6.850752 TGTTGACCTACTCATGATGTAAGA 57.149 37.500 0.00 0.00 0.00 2.10
3572 3876 6.018425 GCATGTTGACCTACTCATGATGTAAG 60.018 42.308 0.00 0.00 39.68 2.34
3625 3966 1.733912 CGAAGATGCAAGCAAGCTGTA 59.266 47.619 0.00 0.00 34.99 2.74
3706 4047 3.576118 CTCATGGGACCATAGTAGAGGTG 59.424 52.174 3.05 0.00 38.50 4.00
3714 4055 1.302033 GCCGCTCATGGGACCATAG 60.302 63.158 3.05 3.94 34.91 2.23
3723 4064 2.821366 GTGGTGAGGCCGCTCATG 60.821 66.667 8.34 0.00 44.20 3.07
3724 4065 4.101448 GGTGGTGAGGCCGCTCAT 62.101 66.667 8.34 0.00 46.69 2.90
3744 4085 0.604780 ATGGATGATAGGCACGCTGC 60.605 55.000 1.92 1.92 44.08 5.25
3745 4086 1.154197 CATGGATGATAGGCACGCTG 58.846 55.000 0.00 0.00 0.00 5.18
3746 4087 0.604780 GCATGGATGATAGGCACGCT 60.605 55.000 0.00 0.00 0.00 5.07
3747 4088 1.580845 GGCATGGATGATAGGCACGC 61.581 60.000 0.00 0.00 0.00 5.34
3748 4089 0.035881 AGGCATGGATGATAGGCACG 59.964 55.000 0.00 0.00 0.00 5.34
3749 4090 1.350351 AGAGGCATGGATGATAGGCAC 59.650 52.381 0.00 0.00 0.00 5.01
3750 4091 1.350019 CAGAGGCATGGATGATAGGCA 59.650 52.381 0.00 0.00 0.00 4.75
3751 4092 1.949547 GCAGAGGCATGGATGATAGGC 60.950 57.143 0.00 0.00 40.72 3.93
3752 4093 1.629353 AGCAGAGGCATGGATGATAGG 59.371 52.381 0.00 0.00 44.61 2.57
3753 4094 3.075148 CAAGCAGAGGCATGGATGATAG 58.925 50.000 0.00 0.00 44.61 2.08
3754 4095 2.707257 TCAAGCAGAGGCATGGATGATA 59.293 45.455 0.00 0.00 44.61 2.15
3755 4096 1.493446 TCAAGCAGAGGCATGGATGAT 59.507 47.619 0.00 0.00 44.61 2.45
3756 4097 0.913924 TCAAGCAGAGGCATGGATGA 59.086 50.000 0.00 0.00 44.61 2.92
3757 4098 1.022735 GTCAAGCAGAGGCATGGATG 58.977 55.000 0.00 0.00 44.61 3.51
3758 4099 0.106819 GGTCAAGCAGAGGCATGGAT 60.107 55.000 0.00 0.00 44.61 3.41
3759 4100 1.203441 AGGTCAAGCAGAGGCATGGA 61.203 55.000 0.00 0.00 44.61 3.41
3760 4101 1.030488 CAGGTCAAGCAGAGGCATGG 61.030 60.000 0.00 0.00 44.61 3.66
3761 4102 1.654954 GCAGGTCAAGCAGAGGCATG 61.655 60.000 0.00 0.00 44.61 4.06
3762 4103 1.378250 GCAGGTCAAGCAGAGGCAT 60.378 57.895 0.00 0.00 44.61 4.40
3763 4104 2.033141 GCAGGTCAAGCAGAGGCA 59.967 61.111 0.00 0.00 44.61 4.75
3764 4105 2.033141 TGCAGGTCAAGCAGAGGC 59.967 61.111 0.00 0.00 37.02 4.70
3776 4117 0.752054 GAGAGAGATGGACCTGCAGG 59.248 60.000 31.60 31.60 42.17 4.85
3777 4118 1.409790 CAGAGAGAGATGGACCTGCAG 59.590 57.143 6.78 6.78 0.00 4.41
3778 4119 1.482954 CAGAGAGAGATGGACCTGCA 58.517 55.000 0.00 0.00 0.00 4.41
3779 4120 0.752054 CCAGAGAGAGATGGACCTGC 59.248 60.000 0.00 0.00 39.02 4.85
3780 4121 2.450867 TCCAGAGAGAGATGGACCTG 57.549 55.000 0.00 0.00 40.70 4.00
3785 4126 2.776536 ACCCAAATCCAGAGAGAGATGG 59.223 50.000 0.00 0.00 37.97 3.51
3786 4127 3.199508 ACACCCAAATCCAGAGAGAGATG 59.800 47.826 0.00 0.00 0.00 2.90
3787 4128 3.458831 ACACCCAAATCCAGAGAGAGAT 58.541 45.455 0.00 0.00 0.00 2.75
3788 4129 2.907892 ACACCCAAATCCAGAGAGAGA 58.092 47.619 0.00 0.00 0.00 3.10
3789 4130 3.710209 AACACCCAAATCCAGAGAGAG 57.290 47.619 0.00 0.00 0.00 3.20
3790 4131 3.498481 CCAAACACCCAAATCCAGAGAGA 60.498 47.826 0.00 0.00 0.00 3.10
3791 4132 2.821969 CCAAACACCCAAATCCAGAGAG 59.178 50.000 0.00 0.00 0.00 3.20
3792 4133 2.490718 CCCAAACACCCAAATCCAGAGA 60.491 50.000 0.00 0.00 0.00 3.10
3793 4134 1.895131 CCCAAACACCCAAATCCAGAG 59.105 52.381 0.00 0.00 0.00 3.35
3794 4135 1.501170 TCCCAAACACCCAAATCCAGA 59.499 47.619 0.00 0.00 0.00 3.86
3795 4136 1.895131 CTCCCAAACACCCAAATCCAG 59.105 52.381 0.00 0.00 0.00 3.86
3796 4137 1.219213 ACTCCCAAACACCCAAATCCA 59.781 47.619 0.00 0.00 0.00 3.41
3797 4138 1.618343 CACTCCCAAACACCCAAATCC 59.382 52.381 0.00 0.00 0.00 3.01
3798 4139 1.618343 CCACTCCCAAACACCCAAATC 59.382 52.381 0.00 0.00 0.00 2.17
3799 4140 1.219213 TCCACTCCCAAACACCCAAAT 59.781 47.619 0.00 0.00 0.00 2.32
3800 4141 0.631753 TCCACTCCCAAACACCCAAA 59.368 50.000 0.00 0.00 0.00 3.28
3801 4142 0.631753 TTCCACTCCCAAACACCCAA 59.368 50.000 0.00 0.00 0.00 4.12
3802 4143 0.106419 GTTCCACTCCCAAACACCCA 60.106 55.000 0.00 0.00 0.00 4.51
3803 4144 0.106419 TGTTCCACTCCCAAACACCC 60.106 55.000 0.00 0.00 0.00 4.61
3804 4145 1.318576 CTGTTCCACTCCCAAACACC 58.681 55.000 0.00 0.00 0.00 4.16
3805 4146 0.668535 GCTGTTCCACTCCCAAACAC 59.331 55.000 0.00 0.00 0.00 3.32
3836 4177 3.699038 TCTCCTTGAACACCAAACCAAAG 59.301 43.478 0.00 0.00 33.76 2.77
3869 4210 6.881602 ACACCACACCAAAACAAATGTAAATT 59.118 30.769 0.00 0.00 0.00 1.82
3956 4297 6.071447 TCCAACCTGAAATCCACAACAATATG 60.071 38.462 0.00 0.00 0.00 1.78
4036 4377 3.633525 ACAGAGACAAGCATGAGCAAAAA 59.366 39.130 0.00 0.00 45.49 1.94
4046 4387 5.065914 AGCAAAAATCTACAGAGACAAGCA 58.934 37.500 0.00 0.00 33.41 3.91
4047 4388 5.180117 TGAGCAAAAATCTACAGAGACAAGC 59.820 40.000 0.00 0.00 33.41 4.01
4048 4389 6.791887 TGAGCAAAAATCTACAGAGACAAG 57.208 37.500 0.00 0.00 33.41 3.16
4049 4390 6.348786 GCATGAGCAAAAATCTACAGAGACAA 60.349 38.462 0.00 0.00 41.58 3.18
4050 4391 5.122869 GCATGAGCAAAAATCTACAGAGACA 59.877 40.000 0.00 0.00 41.58 3.41
4051 4392 5.353678 AGCATGAGCAAAAATCTACAGAGAC 59.646 40.000 0.00 0.00 45.49 3.36
4052 4393 5.494724 AGCATGAGCAAAAATCTACAGAGA 58.505 37.500 0.00 0.00 45.49 3.10
4053 4394 5.814764 AGCATGAGCAAAAATCTACAGAG 57.185 39.130 0.00 0.00 45.49 3.35
4054 4395 5.474532 ACAAGCATGAGCAAAAATCTACAGA 59.525 36.000 0.00 0.00 45.49 3.41
4055 4396 5.706916 ACAAGCATGAGCAAAAATCTACAG 58.293 37.500 0.00 0.00 45.49 2.74
4056 4397 5.474532 AGACAAGCATGAGCAAAAATCTACA 59.525 36.000 0.00 0.00 45.49 2.74
4057 4398 5.947443 AGACAAGCATGAGCAAAAATCTAC 58.053 37.500 0.00 0.00 45.49 2.59
4058 4399 5.942236 AGAGACAAGCATGAGCAAAAATCTA 59.058 36.000 0.00 0.00 45.49 1.98
4059 4400 4.765856 AGAGACAAGCATGAGCAAAAATCT 59.234 37.500 0.00 0.00 45.49 2.40
4060 4401 4.857588 CAGAGACAAGCATGAGCAAAAATC 59.142 41.667 0.00 0.00 45.49 2.17
4061 4402 4.280174 ACAGAGACAAGCATGAGCAAAAAT 59.720 37.500 0.00 0.00 45.49 1.82
4062 4403 3.633525 ACAGAGACAAGCATGAGCAAAAA 59.366 39.130 0.00 0.00 45.49 1.94
4063 4404 3.216800 ACAGAGACAAGCATGAGCAAAA 58.783 40.909 0.00 0.00 45.49 2.44
4064 4405 2.854963 ACAGAGACAAGCATGAGCAAA 58.145 42.857 0.00 0.00 45.49 3.68
4065 4406 2.556144 ACAGAGACAAGCATGAGCAA 57.444 45.000 0.00 0.00 45.49 3.91
4066 4407 2.827921 TCTACAGAGACAAGCATGAGCA 59.172 45.455 0.00 0.00 45.49 4.26
4067 4408 3.516981 TCTACAGAGACAAGCATGAGC 57.483 47.619 0.00 0.00 42.56 4.26
4068 4409 6.981762 AAAATCTACAGAGACAAGCATGAG 57.018 37.500 0.00 0.00 33.41 2.90
4069 4410 6.348786 GCAAAAATCTACAGAGACAAGCATGA 60.349 38.462 0.00 0.00 33.41 3.07
4070 4411 5.798934 GCAAAAATCTACAGAGACAAGCATG 59.201 40.000 0.00 0.00 33.41 4.06
4071 4412 5.709164 AGCAAAAATCTACAGAGACAAGCAT 59.291 36.000 0.00 0.00 33.41 3.79
4072 4413 5.065914 AGCAAAAATCTACAGAGACAAGCA 58.934 37.500 0.00 0.00 33.41 3.91
4073 4414 5.180117 TGAGCAAAAATCTACAGAGACAAGC 59.820 40.000 0.00 0.00 33.41 4.01
4074 4415 6.791887 TGAGCAAAAATCTACAGAGACAAG 57.208 37.500 0.00 0.00 33.41 3.16
4075 4416 6.348786 GCATGAGCAAAAATCTACAGAGACAA 60.349 38.462 0.00 0.00 41.58 3.18
4076 4417 5.122869 GCATGAGCAAAAATCTACAGAGACA 59.877 40.000 0.00 0.00 41.58 3.41
4077 4418 5.353678 AGCATGAGCAAAAATCTACAGAGAC 59.646 40.000 0.00 0.00 45.49 3.36
4078 4419 5.353400 CAGCATGAGCAAAAATCTACAGAGA 59.647 40.000 0.00 0.00 45.49 3.10
4079 4420 5.448768 CCAGCATGAGCAAAAATCTACAGAG 60.449 44.000 0.00 0.00 45.49 3.35
4080 4421 4.397103 CCAGCATGAGCAAAAATCTACAGA 59.603 41.667 0.00 0.00 45.49 3.41
4081 4422 4.439700 CCCAGCATGAGCAAAAATCTACAG 60.440 45.833 0.00 0.00 45.49 2.74
4082 4423 3.444742 CCCAGCATGAGCAAAAATCTACA 59.555 43.478 0.00 0.00 45.49 2.74
4083 4424 3.736126 GCCCAGCATGAGCAAAAATCTAC 60.736 47.826 0.00 0.00 45.49 2.59
4196 4537 9.891828 CTACACATGAGACTAAGATGATCTAAC 57.108 37.037 0.00 0.00 0.00 2.34
4210 4551 6.484540 CAAATGATTGAGCTACACATGAGAC 58.515 40.000 0.00 0.00 38.94 3.36
4245 4586 1.672881 GATTGCCCAGATGGAAGAACG 59.327 52.381 0.00 0.00 37.39 3.95
4334 4675 1.740380 GCTTCATAGCGAGGCAACAGA 60.740 52.381 0.00 0.00 45.77 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.