Multiple sequence alignment - TraesCS7D01G335400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G335400 chr7D 100.000 7350 0 0 1 7350 426840103 426847452 0.000000e+00 13573.0
1 TraesCS7D01G335400 chr7D 91.702 699 48 7 2295 2984 428024887 428025584 0.000000e+00 961.0
2 TraesCS7D01G335400 chr7D 81.774 620 65 24 893 1490 617733788 617733195 6.670000e-130 475.0
3 TraesCS7D01G335400 chr7B 93.997 3215 120 25 3584 6782 444471569 444474726 0.000000e+00 4800.0
4 TraesCS7D01G335400 chr7B 89.509 1630 90 35 661 2257 444460811 444462392 0.000000e+00 1988.0
5 TraesCS7D01G335400 chr7B 90.739 1177 78 16 2440 3602 444467101 444468260 0.000000e+00 1541.0
6 TraesCS7D01G335400 chr7B 91.595 702 49 6 2295 2991 445663450 445664146 0.000000e+00 961.0
7 TraesCS7D01G335400 chr7B 95.332 407 10 5 6951 7350 444475030 444475434 8.040000e-179 638.0
8 TraesCS7D01G335400 chr7B 87.850 214 14 4 3386 3587 677885790 677885577 2.650000e-59 241.0
9 TraesCS7D01G335400 chr7B 94.872 117 6 0 6784 6900 444474813 444474929 4.530000e-42 183.0
10 TraesCS7D01G335400 chr7A 90.944 2871 169 44 4542 7350 506134662 506131821 0.000000e+00 3777.0
11 TraesCS7D01G335400 chr7A 83.450 1716 151 69 579 2246 506138292 506136662 0.000000e+00 1472.0
12 TraesCS7D01G335400 chr7A 92.394 710 45 5 2295 2996 496823778 496823070 0.000000e+00 1003.0
13 TraesCS7D01G335400 chr7A 90.275 545 28 7 3931 4460 506135232 506134698 0.000000e+00 689.0
14 TraesCS7D01G335400 chr7A 97.338 263 4 1 323 582 506140520 506140258 1.880000e-120 444.0
15 TraesCS7D01G335400 chr7A 88.270 341 24 8 7 335 506141095 506140759 1.920000e-105 394.0
16 TraesCS7D01G335400 chr7A 80.917 545 58 27 3020 3539 506136667 506136144 8.940000e-104 388.0
17 TraesCS7D01G335400 chr7A 88.263 213 24 1 3708 3920 506135497 506135286 3.400000e-63 254.0
18 TraesCS7D01G335400 chr7A 87.225 227 16 4 3374 3587 518162463 518162237 5.700000e-61 246.0
19 TraesCS7D01G335400 chr7A 92.391 92 4 2 3201 3289 518162554 518162463 2.150000e-25 128.0
20 TraesCS7D01G335400 chr1D 92.439 701 42 8 2294 2987 225403915 225403219 0.000000e+00 990.0
21 TraesCS7D01G335400 chr1D 90.741 108 8 2 3480 3587 7099819 7099924 7.690000e-30 143.0
22 TraesCS7D01G335400 chr1D 92.982 57 4 0 2248 2304 24119693 24119637 4.730000e-12 84.2
23 TraesCS7D01G335400 chr1D 79.720 143 8 9 2248 2369 372148817 372148675 4.730000e-12 84.2
24 TraesCS7D01G335400 chr6D 91.667 708 47 7 2295 2996 296696715 296696014 0.000000e+00 970.0
25 TraesCS7D01G335400 chr6D 89.943 706 63 4 2295 2996 35699484 35698783 0.000000e+00 904.0
26 TraesCS7D01G335400 chr6D 85.548 429 41 9 2248 2657 430833584 430834010 5.270000e-116 429.0
27 TraesCS7D01G335400 chr6D 88.372 129 14 1 2295 2423 39376891 39376764 3.550000e-33 154.0
28 TraesCS7D01G335400 chr3A 91.513 707 53 5 2294 2996 375018184 375017481 0.000000e+00 966.0
29 TraesCS7D01G335400 chr6B 89.376 753 72 6 2248 2996 638400010 638400758 0.000000e+00 941.0
30 TraesCS7D01G335400 chr6B 87.850 214 14 4 3386 3587 463261750 463261537 2.650000e-59 241.0
31 TraesCS7D01G335400 chr1B 88.992 754 74 7 2248 2996 503819635 503818886 0.000000e+00 924.0
32 TraesCS7D01G335400 chr5B 86.765 272 30 4 1170 1438 53663108 53663376 1.550000e-76 298.0
33 TraesCS7D01G335400 chr5B 82.039 206 28 7 3386 3587 637397827 637397627 4.560000e-37 167.0
34 TraesCS7D01G335400 chr5B 89.362 94 6 3 1545 1636 53663438 53663529 1.680000e-21 115.0
35 TraesCS7D01G335400 chr5B 98.077 52 1 0 3238 3289 637397894 637397843 2.820000e-14 91.6
36 TraesCS7D01G335400 chr1A 88.053 226 15 4 3374 3587 503460504 503460279 2.630000e-64 257.0
37 TraesCS7D01G335400 chr1A 88.053 226 15 4 3374 3587 503584213 503584438 2.630000e-64 257.0
38 TraesCS7D01G335400 chr1A 86.726 226 18 4 3374 3587 503556951 503557176 2.650000e-59 241.0
39 TraesCS7D01G335400 chr1A 91.304 92 5 2 3201 3289 503460595 503460504 1.000000e-23 122.0
40 TraesCS7D01G335400 chr1A 91.304 92 5 2 3201 3289 503556860 503556951 1.000000e-23 122.0
41 TraesCS7D01G335400 chr3D 87.611 226 16 4 3374 3587 578057956 578058181 1.220000e-62 252.0
42 TraesCS7D01G335400 chr3D 91.045 134 11 1 3456 3589 351936187 351936319 5.860000e-41 180.0
43 TraesCS7D01G335400 chr3D 90.741 108 9 1 3480 3587 141514483 141514377 7.690000e-30 143.0
44 TraesCS7D01G335400 chr3D 82.036 167 14 12 1122 1279 16145559 16145718 2.150000e-25 128.0
45 TraesCS7D01G335400 chr3D 91.304 92 5 2 3201 3289 351936014 351936105 1.000000e-23 122.0
46 TraesCS7D01G335400 chr3D 91.304 92 5 2 3201 3289 578057865 578057956 1.000000e-23 122.0
47 TraesCS7D01G335400 chr4B 87.255 204 14 4 3383 3574 117027158 117027361 9.600000e-54 222.0
48 TraesCS7D01G335400 chr4B 98.077 52 1 0 3238 3289 117027094 117027145 2.820000e-14 91.6
49 TraesCS7D01G335400 chr4D 84.956 226 21 5 3374 3587 15087820 15088044 4.470000e-52 217.0
50 TraesCS7D01G335400 chr4D 86.207 174 16 5 1544 1715 427023149 427023316 1.630000e-41 182.0
51 TraesCS7D01G335400 chr4D 87.692 130 15 1 2294 2423 49866359 49866231 4.590000e-32 150.0
52 TraesCS7D01G335400 chr4D 92.708 96 6 1 3492 3587 215161413 215161319 3.580000e-28 137.0
53 TraesCS7D01G335400 chr4D 89.815 108 9 2 3480 3587 386169777 386169672 3.580000e-28 137.0
54 TraesCS7D01G335400 chr4D 91.304 92 5 2 3201 3289 15087729 15087820 1.000000e-23 122.0
55 TraesCS7D01G335400 chr4D 97.872 47 1 0 2248 2294 298239719 298239765 1.700000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G335400 chr7D 426840103 426847452 7349 False 13573.000000 13573 100.000000 1 7350 1 chr7D.!!$F1 7349
1 TraesCS7D01G335400 chr7D 428024887 428025584 697 False 961.000000 961 91.702000 2295 2984 1 chr7D.!!$F2 689
2 TraesCS7D01G335400 chr7D 617733195 617733788 593 True 475.000000 475 81.774000 893 1490 1 chr7D.!!$R1 597
3 TraesCS7D01G335400 chr7B 444460811 444462392 1581 False 1988.000000 1988 89.509000 661 2257 1 chr7B.!!$F1 1596
4 TraesCS7D01G335400 chr7B 444467101 444475434 8333 False 1790.500000 4800 93.735000 2440 7350 4 chr7B.!!$F3 4910
5 TraesCS7D01G335400 chr7B 445663450 445664146 696 False 961.000000 961 91.595000 2295 2991 1 chr7B.!!$F2 696
6 TraesCS7D01G335400 chr7A 506131821 506141095 9274 True 1059.714286 3777 88.493857 7 7350 7 chr7A.!!$R2 7343
7 TraesCS7D01G335400 chr7A 496823070 496823778 708 True 1003.000000 1003 92.394000 2295 2996 1 chr7A.!!$R1 701
8 TraesCS7D01G335400 chr1D 225403219 225403915 696 True 990.000000 990 92.439000 2294 2987 1 chr1D.!!$R2 693
9 TraesCS7D01G335400 chr6D 296696014 296696715 701 True 970.000000 970 91.667000 2295 2996 1 chr6D.!!$R3 701
10 TraesCS7D01G335400 chr6D 35698783 35699484 701 True 904.000000 904 89.943000 2295 2996 1 chr6D.!!$R1 701
11 TraesCS7D01G335400 chr3A 375017481 375018184 703 True 966.000000 966 91.513000 2294 2996 1 chr3A.!!$R1 702
12 TraesCS7D01G335400 chr6B 638400010 638400758 748 False 941.000000 941 89.376000 2248 2996 1 chr6B.!!$F1 748
13 TraesCS7D01G335400 chr1B 503818886 503819635 749 True 924.000000 924 88.992000 2248 2996 1 chr1B.!!$R1 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 3107 0.322008 GGGAGACAGCACAAGGAAGG 60.322 60.0 0.00 0.0 0.00 3.46 F
2296 4627 0.031414 TTGGGGTAGGCTAGAGGACC 60.031 60.0 0.00 0.0 0.00 4.46 F
3170 7644 0.109532 TCCAGGCGACCATTCACAAA 59.890 50.0 0.00 0.0 0.00 2.83 F
3712 8833 0.244994 TCTCGAAGTCCAAGCTGAGC 59.755 55.0 0.00 0.0 0.00 4.26 F
4472 9777 1.857965 TCTGTAGTCTGCATCAGCCT 58.142 50.0 0.00 0.0 41.13 4.58 F
5750 11055 0.247460 AGCACAGCTGCATACTTCGA 59.753 50.0 15.27 0.0 46.97 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2417 4752 0.323178 TGTCAGAGGTCGGGGTAGAC 60.323 60.0 0.0 0.0 40.25 2.59 R
3227 7701 0.036732 ATGCCAGGTCGAAAAGCTCA 59.963 50.0 0.0 0.0 31.91 4.26 R
4804 10109 0.034896 ACCCCTTAACTGCTGACACG 59.965 55.0 0.0 0.0 0.00 4.49 R
5488 10793 0.809385 CGTCTTCAGCTAACCGAGGA 59.191 55.0 0.0 0.0 0.00 3.71 R
6340 11648 0.112995 TGCCAGCCAGTCATTTCCTT 59.887 50.0 0.0 0.0 0.00 3.36 R
6679 12027 0.035056 CGAGCCATCTTCAGGGGTTT 60.035 55.0 0.0 0.0 34.46 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.016527 GGGCTTACCTACATATTTAGTTTGGC 60.017 42.308 0.00 0.00 35.85 4.52
55 56 3.241067 GCAAGACAAATGCCATGACAT 57.759 42.857 0.00 0.00 37.85 3.06
68 77 3.947196 GCCATGACATGAGACATTTGGTA 59.053 43.478 17.24 0.00 0.00 3.25
101 110 1.674611 CGCCTACGTCGCTCAAACAG 61.675 60.000 0.00 0.00 33.53 3.16
111 120 1.858458 CGCTCAAACAGAACACGAAGA 59.142 47.619 0.00 0.00 0.00 2.87
157 166 1.152735 TCTAGCGCGGGAATCCTCT 60.153 57.895 8.83 0.00 0.00 3.69
158 167 0.755698 TCTAGCGCGGGAATCCTCTT 60.756 55.000 8.83 0.00 0.00 2.85
283 295 1.674817 CGTAGGGCGATGTTTCTTGGT 60.675 52.381 0.00 0.00 44.77 3.67
286 298 1.613437 AGGGCGATGTTTCTTGGTTTG 59.387 47.619 0.00 0.00 0.00 2.93
316 328 3.321111 GTGGTAGGGTCATGATGTATCGT 59.679 47.826 0.00 0.00 0.00 3.73
317 329 3.572682 TGGTAGGGTCATGATGTATCGTC 59.427 47.826 0.00 0.00 0.00 4.20
527 793 3.139397 ACCACAACCCAAGGAATACAAGA 59.861 43.478 0.00 0.00 0.00 3.02
533 799 4.104831 ACCCAAGGAATACAAGACTAGCT 58.895 43.478 0.00 0.00 0.00 3.32
635 2870 2.277756 GCGGAGGCTACGTACGTG 60.278 66.667 30.25 19.92 35.83 4.49
636 2871 2.277756 CGGAGGCTACGTACGTGC 60.278 66.667 30.25 27.11 0.00 5.34
637 2872 2.879907 GGAGGCTACGTACGTGCA 59.120 61.111 30.25 11.03 0.00 4.57
639 2874 1.872679 GAGGCTACGTACGTGCAGC 60.873 63.158 30.25 28.58 0.00 5.25
641 2876 3.898640 GCTACGTACGTGCAGCGC 61.899 66.667 30.25 18.94 46.11 5.92
748 2992 3.324930 CTCCAGAGCAGGCCACCA 61.325 66.667 5.01 0.00 0.00 4.17
802 3046 2.056906 AATACTCCATGCCTCCCGCC 62.057 60.000 0.00 0.00 36.24 6.13
808 3052 1.837051 CATGCCTCCCGCCCTACTA 60.837 63.158 0.00 0.00 36.24 1.82
809 3053 1.837499 ATGCCTCCCGCCCTACTAC 60.837 63.158 0.00 0.00 36.24 2.73
810 3054 2.123382 GCCTCCCGCCCTACTACT 60.123 66.667 0.00 0.00 0.00 2.57
863 3107 0.322008 GGGAGACAGCACAAGGAAGG 60.322 60.000 0.00 0.00 0.00 3.46
885 3129 4.007644 CTGAGGACGCAGGGCACA 62.008 66.667 0.00 0.00 32.26 4.57
897 3141 3.455469 GGCACAATGGCAGCTCCC 61.455 66.667 0.00 0.00 43.14 4.30
931 3175 4.580580 GTCCAAGGAAGAGCAAGAAAAAGA 59.419 41.667 0.00 0.00 0.00 2.52
935 3179 6.818142 CCAAGGAAGAGCAAGAAAAAGAAAAA 59.182 34.615 0.00 0.00 0.00 1.94
936 3180 7.010830 CCAAGGAAGAGCAAGAAAAAGAAAAAG 59.989 37.037 0.00 0.00 0.00 2.27
937 3181 6.045318 AGGAAGAGCAAGAAAAAGAAAAAGC 58.955 36.000 0.00 0.00 0.00 3.51
938 3182 5.812127 GGAAGAGCAAGAAAAAGAAAAAGCA 59.188 36.000 0.00 0.00 0.00 3.91
941 3185 3.873361 AGCAAGAAAAAGAAAAAGCAGGC 59.127 39.130 0.00 0.00 0.00 4.85
949 3199 1.228988 AAAAAGCAGGCAGGGGAGG 60.229 57.895 0.00 0.00 0.00 4.30
984 3234 1.592669 CACCTCGCGCCAAGATAGG 60.593 63.158 0.00 3.22 0.00 2.57
1108 3404 4.827087 CGCAGGACTCAGCCGCAT 62.827 66.667 0.00 0.00 0.00 4.73
1109 3405 2.894387 GCAGGACTCAGCCGCATC 60.894 66.667 0.00 0.00 0.00 3.91
1110 3406 2.202987 CAGGACTCAGCCGCATCC 60.203 66.667 0.00 0.00 0.00 3.51
1111 3407 2.685017 AGGACTCAGCCGCATCCA 60.685 61.111 0.00 0.00 33.33 3.41
1323 3625 3.680786 CAGGACGTCGTCAGGGCA 61.681 66.667 25.64 0.00 33.68 5.36
1523 3828 2.290323 ACTTGCCGTCTTTTCCTGCTAT 60.290 45.455 0.00 0.00 0.00 2.97
1524 3829 2.489938 TGCCGTCTTTTCCTGCTATT 57.510 45.000 0.00 0.00 0.00 1.73
1525 3830 2.356135 TGCCGTCTTTTCCTGCTATTC 58.644 47.619 0.00 0.00 0.00 1.75
1526 3831 2.027192 TGCCGTCTTTTCCTGCTATTCT 60.027 45.455 0.00 0.00 0.00 2.40
1527 3832 2.352960 GCCGTCTTTTCCTGCTATTCTG 59.647 50.000 0.00 0.00 0.00 3.02
1528 3833 2.352960 CCGTCTTTTCCTGCTATTCTGC 59.647 50.000 0.00 0.00 0.00 4.26
1529 3834 2.352960 CGTCTTTTCCTGCTATTCTGCC 59.647 50.000 0.00 0.00 0.00 4.85
1540 3845 2.162408 GCTATTCTGCCACAACAACTCC 59.838 50.000 0.00 0.00 0.00 3.85
1576 3883 3.764972 ACATTGGCATCATGTCATTGTCA 59.235 39.130 12.93 0.00 41.05 3.58
1647 3956 1.270094 CCAGTGCGGCGGATAGATTAA 60.270 52.381 9.78 0.00 0.00 1.40
1678 3987 4.150627 GCCACAGCAACATACGTATCATAG 59.849 45.833 4.74 0.00 39.53 2.23
1719 4034 3.959478 CCATTTCGGCGCTACTAGA 57.041 52.632 7.64 0.00 0.00 2.43
1798 4113 2.704725 AAAATGCAGTACCAAGCACG 57.295 45.000 7.31 0.00 44.49 5.34
1980 4300 1.448540 CAATTGAGGGCGAGCTCGT 60.449 57.895 34.46 17.65 42.22 4.18
1984 4304 1.320344 TTGAGGGCGAGCTCGTACAT 61.320 55.000 34.46 25.52 42.22 2.29
2207 4531 8.084590 ACAGTATTAGTTTTAACTGCACTGTC 57.915 34.615 20.80 4.31 44.29 3.51
2220 4551 3.081061 TGCACTGTCACTCAAACAAGTT 58.919 40.909 0.00 0.00 0.00 2.66
2296 4627 0.031414 TTGGGGTAGGCTAGAGGACC 60.031 60.000 0.00 0.00 0.00 4.46
2318 4650 2.596346 ACTCATGGTTTTGGCACATGA 58.404 42.857 15.19 15.19 46.12 3.07
2358 4693 2.432510 CCCCTGTCCATGACTAGTTCTC 59.567 54.545 0.00 0.00 33.15 2.87
2359 4694 3.370104 CCCTGTCCATGACTAGTTCTCT 58.630 50.000 0.00 0.00 33.15 3.10
2360 4695 3.131933 CCCTGTCCATGACTAGTTCTCTG 59.868 52.174 0.00 0.00 33.15 3.35
2361 4696 3.131933 CCTGTCCATGACTAGTTCTCTGG 59.868 52.174 0.00 2.37 33.15 3.86
2362 4697 3.766591 CTGTCCATGACTAGTTCTCTGGT 59.233 47.826 0.00 0.00 38.08 4.00
2363 4698 3.511540 TGTCCATGACTAGTTCTCTGGTG 59.488 47.826 0.00 0.00 35.56 4.17
2365 4700 4.404073 GTCCATGACTAGTTCTCTGGTGAT 59.596 45.833 0.00 0.00 35.56 3.06
2366 4701 5.594725 GTCCATGACTAGTTCTCTGGTGATA 59.405 44.000 0.00 0.00 35.56 2.15
2367 4702 5.594725 TCCATGACTAGTTCTCTGGTGATAC 59.405 44.000 0.00 0.00 35.56 2.24
2368 4703 5.596361 CCATGACTAGTTCTCTGGTGATACT 59.404 44.000 0.00 0.00 35.56 2.12
2370 4705 5.194432 TGACTAGTTCTCTGGTGATACTCC 58.806 45.833 0.00 0.00 35.56 3.85
2371 4706 5.194432 GACTAGTTCTCTGGTGATACTCCA 58.806 45.833 0.00 0.00 35.56 3.86
2378 4713 3.810310 CTGGTGATACTCCAGTCCTTC 57.190 52.381 10.50 0.00 45.09 3.46
2379 4714 3.099905 CTGGTGATACTCCAGTCCTTCA 58.900 50.000 10.50 0.00 45.09 3.02
2380 4715 3.099905 TGGTGATACTCCAGTCCTTCAG 58.900 50.000 0.00 0.00 0.00 3.02
2381 4716 3.245622 TGGTGATACTCCAGTCCTTCAGA 60.246 47.826 0.00 0.00 0.00 3.27
2382 4717 3.964031 GGTGATACTCCAGTCCTTCAGAT 59.036 47.826 0.00 0.00 0.00 2.90
2384 4719 4.892934 GTGATACTCCAGTCCTTCAGATCT 59.107 45.833 0.00 0.00 0.00 2.75
2385 4720 5.009610 GTGATACTCCAGTCCTTCAGATCTC 59.990 48.000 0.00 0.00 0.00 2.75
2386 4721 3.756082 ACTCCAGTCCTTCAGATCTCT 57.244 47.619 0.00 0.00 0.00 3.10
2387 4722 3.631250 ACTCCAGTCCTTCAGATCTCTC 58.369 50.000 0.00 0.00 0.00 3.20
2388 4723 3.269381 ACTCCAGTCCTTCAGATCTCTCT 59.731 47.826 0.00 0.00 0.00 3.10
2389 4724 4.264352 ACTCCAGTCCTTCAGATCTCTCTT 60.264 45.833 0.00 0.00 0.00 2.85
2391 4726 5.090139 TCCAGTCCTTCAGATCTCTCTTTT 58.910 41.667 0.00 0.00 0.00 2.27
2393 4728 6.153680 TCCAGTCCTTCAGATCTCTCTTTTAC 59.846 42.308 0.00 0.00 0.00 2.01
2394 4729 6.033341 CAGTCCTTCAGATCTCTCTTTTACG 58.967 44.000 0.00 0.00 0.00 3.18
2396 4731 5.125739 GTCCTTCAGATCTCTCTTTTACGGA 59.874 44.000 0.00 0.00 0.00 4.69
2397 4732 5.125739 TCCTTCAGATCTCTCTTTTACGGAC 59.874 44.000 0.00 0.00 0.00 4.79
2398 4733 5.105716 CCTTCAGATCTCTCTTTTACGGACA 60.106 44.000 0.00 0.00 0.00 4.02
2399 4734 5.312120 TCAGATCTCTCTTTTACGGACAC 57.688 43.478 0.00 0.00 0.00 3.67
2400 4735 4.158025 TCAGATCTCTCTTTTACGGACACC 59.842 45.833 0.00 0.00 0.00 4.16
2401 4736 4.158764 CAGATCTCTCTTTTACGGACACCT 59.841 45.833 0.00 0.00 0.00 4.00
2402 4737 3.936372 TCTCTCTTTTACGGACACCTG 57.064 47.619 0.00 0.00 0.00 4.00
2403 4738 3.228453 TCTCTCTTTTACGGACACCTGT 58.772 45.455 0.00 0.00 35.70 4.00
2404 4739 3.255149 TCTCTCTTTTACGGACACCTGTC 59.745 47.826 0.00 0.00 44.04 3.51
2405 4740 2.960384 TCTCTTTTACGGACACCTGTCA 59.040 45.455 7.71 0.00 46.47 3.58
2407 4742 3.659786 TCTTTTACGGACACCTGTCATG 58.340 45.455 7.71 2.18 46.47 3.07
2409 4744 2.736144 TTACGGACACCTGTCATGTC 57.264 50.000 7.71 0.00 46.47 3.06
2410 4745 1.623163 TACGGACACCTGTCATGTCA 58.377 50.000 7.71 0.00 46.89 3.58
2411 4746 0.756294 ACGGACACCTGTCATGTCAA 59.244 50.000 7.71 0.00 46.89 3.18
2412 4747 1.270305 ACGGACACCTGTCATGTCAAG 60.270 52.381 7.71 4.92 46.89 3.02
2413 4748 1.270305 CGGACACCTGTCATGTCAAGT 60.270 52.381 7.71 0.00 46.89 3.16
2416 4751 2.476619 GACACCTGTCATGTCAAGTTCG 59.523 50.000 0.31 0.00 44.87 3.95
2417 4752 1.800586 CACCTGTCATGTCAAGTTCGG 59.199 52.381 0.00 0.00 0.00 4.30
2418 4753 1.416401 ACCTGTCATGTCAAGTTCGGT 59.584 47.619 0.00 0.00 0.00 4.69
2419 4754 2.069273 CCTGTCATGTCAAGTTCGGTC 58.931 52.381 0.00 0.00 0.00 4.79
2421 4756 3.056821 CCTGTCATGTCAAGTTCGGTCTA 60.057 47.826 0.00 0.00 0.00 2.59
2422 4757 3.909430 TGTCATGTCAAGTTCGGTCTAC 58.091 45.455 0.00 0.00 0.00 2.59
2423 4758 3.251571 GTCATGTCAAGTTCGGTCTACC 58.748 50.000 0.00 0.00 0.00 3.18
2424 4759 2.232941 TCATGTCAAGTTCGGTCTACCC 59.767 50.000 0.00 0.00 0.00 3.69
2435 4770 2.491291 GTCTACCCCGACCTCTGAC 58.509 63.158 0.00 0.00 0.00 3.51
2436 4771 0.323178 GTCTACCCCGACCTCTGACA 60.323 60.000 0.00 0.00 0.00 3.58
2437 4772 0.629596 TCTACCCCGACCTCTGACAT 59.370 55.000 0.00 0.00 0.00 3.06
2438 4773 1.006758 TCTACCCCGACCTCTGACATT 59.993 52.381 0.00 0.00 0.00 2.71
2441 4776 2.040178 ACCCCGACCTCTGACATTATC 58.960 52.381 0.00 0.00 0.00 1.75
2442 4777 2.039418 CCCCGACCTCTGACATTATCA 58.961 52.381 0.00 0.00 35.45 2.15
2501 5445 1.291877 GGCCTACGCTGAATATGCCG 61.292 60.000 0.00 0.00 34.44 5.69
2633 5577 1.079197 TCAACATGCGCATCTCCGT 60.079 52.632 22.51 12.93 0.00 4.69
2776 5725 2.298163 CAAAGAATGCCAGAAGCTTGGT 59.702 45.455 2.10 0.00 44.23 3.67
2836 5785 3.107601 TCTTCATCGATATCCCCATCCC 58.892 50.000 0.00 0.00 0.00 3.85
2838 5787 3.205519 TCATCGATATCCCCATCCCTT 57.794 47.619 0.00 0.00 0.00 3.95
2841 5790 2.701551 TCGATATCCCCATCCCTTTGT 58.298 47.619 0.00 0.00 0.00 2.83
2897 5847 1.379916 CACCACCTGCCCATCAAGA 59.620 57.895 0.00 0.00 0.00 3.02
2917 5867 3.338519 AGACTAACCTTCTCCTCCTCCTT 59.661 47.826 0.00 0.00 0.00 3.36
2938 5891 6.014070 TCCTTGTGCCTAGTAGTATTGAAACA 60.014 38.462 0.00 0.00 0.00 2.83
2965 5920 4.868734 CCTCATGTACTCGGTTTTAGTTCC 59.131 45.833 0.00 0.00 0.00 3.62
2978 5933 8.370182 TCGGTTTTAGTTCCACTAAGTCTAAAT 58.630 33.333 0.00 0.00 41.23 1.40
3002 5957 6.554334 CCTTTCGATTCAAAGGTACTGAAA 57.446 37.500 14.50 0.00 45.28 2.69
3004 5959 5.934935 TTCGATTCAAAGGTACTGAAACC 57.065 39.130 0.70 0.00 40.86 3.27
3005 5960 3.991773 TCGATTCAAAGGTACTGAAACCG 59.008 43.478 11.65 11.65 44.77 4.44
3006 5961 3.424433 CGATTCAAAGGTACTGAAACCGC 60.424 47.826 0.70 0.00 44.77 5.68
3009 5964 1.265905 CAAAGGTACTGAAACCGCACC 59.734 52.381 0.00 0.00 44.77 5.01
3010 5965 0.763035 AAGGTACTGAAACCGCACCT 59.237 50.000 0.00 0.00 44.77 4.00
3011 5966 0.320697 AGGTACTGAAACCGCACCTC 59.679 55.000 0.00 0.00 44.77 3.85
3013 5968 1.338769 GGTACTGAAACCGCACCTCAT 60.339 52.381 0.00 0.00 0.00 2.90
3014 5969 1.732259 GTACTGAAACCGCACCTCATG 59.268 52.381 0.00 0.00 0.00 3.07
3016 5971 1.346395 ACTGAAACCGCACCTCATGTA 59.654 47.619 0.00 0.00 0.00 2.29
3017 5972 2.002586 CTGAAACCGCACCTCATGTAG 58.997 52.381 0.00 0.00 0.00 2.74
3018 5973 1.621317 TGAAACCGCACCTCATGTAGA 59.379 47.619 0.00 0.00 0.00 2.59
3019 5974 2.271800 GAAACCGCACCTCATGTAGAG 58.728 52.381 0.00 0.00 44.31 2.43
3055 6010 9.594936 TTAGGAAATTTTTCTTTAGGATCACCA 57.405 29.630 0.00 0.00 36.68 4.17
3057 6012 8.933653 AGGAAATTTTTCTTTAGGATCACCAAA 58.066 29.630 0.00 0.00 36.68 3.28
3058 6013 9.208022 GGAAATTTTTCTTTAGGATCACCAAAG 57.792 33.333 0.00 1.01 36.68 2.77
3059 6014 9.764363 GAAATTTTTCTTTAGGATCACCAAAGT 57.236 29.630 10.78 0.00 36.56 2.66
3062 6017 8.533569 TTTTTCTTTAGGATCACCAAAGTTCT 57.466 30.769 10.78 0.00 36.56 3.01
3063 6018 8.533569 TTTTCTTTAGGATCACCAAAGTTCTT 57.466 30.769 10.78 0.00 36.56 2.52
3064 6019 8.533569 TTTCTTTAGGATCACCAAAGTTCTTT 57.466 30.769 10.78 0.00 36.56 2.52
3065 6020 7.510549 TCTTTAGGATCACCAAAGTTCTTTG 57.489 36.000 15.72 15.72 36.56 2.77
3066 6021 7.060421 TCTTTAGGATCACCAAAGTTCTTTGT 58.940 34.615 19.46 8.69 36.56 2.83
3067 6022 7.559897 TCTTTAGGATCACCAAAGTTCTTTGTT 59.440 33.333 19.46 6.96 36.56 2.83
3068 6023 7.654022 TTAGGATCACCAAAGTTCTTTGTTT 57.346 32.000 19.46 7.41 38.94 2.83
3069 6024 5.906073 AGGATCACCAAAGTTCTTTGTTTG 58.094 37.500 19.46 16.17 38.94 2.93
3077 6032 6.830736 CCAAAGTTCTTTGTTTGGTTTTGAG 58.169 36.000 19.46 1.68 45.24 3.02
3078 6033 6.648725 CCAAAGTTCTTTGTTTGGTTTTGAGA 59.351 34.615 19.46 0.00 45.24 3.27
3079 6034 7.148590 CCAAAGTTCTTTGTTTGGTTTTGAGAG 60.149 37.037 19.46 1.19 45.24 3.20
3081 6036 7.696992 AGTTCTTTGTTTGGTTTTGAGAGTA 57.303 32.000 0.00 0.00 0.00 2.59
3082 6037 8.293699 AGTTCTTTGTTTGGTTTTGAGAGTAT 57.706 30.769 0.00 0.00 0.00 2.12
3086 6041 8.567948 TCTTTGTTTGGTTTTGAGAGTATGATC 58.432 33.333 0.00 0.00 0.00 2.92
3087 6042 6.480524 TGTTTGGTTTTGAGAGTATGATCG 57.519 37.500 0.00 0.00 0.00 3.69
3088 6043 5.411361 TGTTTGGTTTTGAGAGTATGATCGG 59.589 40.000 0.00 0.00 0.00 4.18
3090 6045 5.160607 TGGTTTTGAGAGTATGATCGGTT 57.839 39.130 0.00 0.00 0.00 4.44
3091 6046 4.935205 TGGTTTTGAGAGTATGATCGGTTG 59.065 41.667 0.00 0.00 0.00 3.77
3092 6047 5.175859 GGTTTTGAGAGTATGATCGGTTGA 58.824 41.667 0.00 0.00 0.00 3.18
3094 6049 6.316390 GGTTTTGAGAGTATGATCGGTTGATT 59.684 38.462 0.00 0.00 34.09 2.57
3095 6050 7.494625 GGTTTTGAGAGTATGATCGGTTGATTA 59.505 37.037 0.00 0.00 34.09 1.75
3096 6051 9.046296 GTTTTGAGAGTATGATCGGTTGATTAT 57.954 33.333 0.00 0.00 35.27 1.28
3098 6053 8.593492 TTGAGAGTATGATCGGTTGATTATTG 57.407 34.615 0.00 0.00 33.33 1.90
3099 6054 7.726216 TGAGAGTATGATCGGTTGATTATTGT 58.274 34.615 0.00 0.00 33.33 2.71
3100 6055 8.856103 TGAGAGTATGATCGGTTGATTATTGTA 58.144 33.333 0.00 0.00 33.33 2.41
3101 6056 9.692749 GAGAGTATGATCGGTTGATTATTGTAA 57.307 33.333 0.00 0.00 33.33 2.41
3102 6057 9.698309 AGAGTATGATCGGTTGATTATTGTAAG 57.302 33.333 0.00 0.00 33.33 2.34
3103 6058 8.833231 AGTATGATCGGTTGATTATTGTAAGG 57.167 34.615 0.00 0.00 33.33 2.69
3105 6060 7.730364 ATGATCGGTTGATTATTGTAAGGTC 57.270 36.000 0.00 0.00 34.09 3.85
3106 6061 6.645306 TGATCGGTTGATTATTGTAAGGTCA 58.355 36.000 0.00 0.00 34.09 4.02
3107 6062 7.106890 TGATCGGTTGATTATTGTAAGGTCAA 58.893 34.615 0.00 0.00 34.09 3.18
3108 6063 6.978343 TCGGTTGATTATTGTAAGGTCAAG 57.022 37.500 0.00 0.00 30.27 3.02
3110 6065 5.123186 CGGTTGATTATTGTAAGGTCAAGCA 59.877 40.000 13.67 0.00 43.60 3.91
3111 6066 6.348950 CGGTTGATTATTGTAAGGTCAAGCAA 60.349 38.462 13.67 0.00 43.60 3.91
3112 6067 7.375053 GGTTGATTATTGTAAGGTCAAGCAAA 58.625 34.615 9.81 0.00 43.17 3.68
3114 6069 8.915654 GTTGATTATTGTAAGGTCAAGCAAAAG 58.084 33.333 0.00 0.00 30.27 2.27
3116 6071 6.648879 TTATTGTAAGGTCAAGCAAAAGCT 57.351 33.333 0.00 0.00 0.00 3.74
3118 6073 6.648879 ATTGTAAGGTCAAGCAAAAGCTAA 57.351 33.333 0.00 0.00 0.00 3.09
3119 6074 5.689383 TGTAAGGTCAAGCAAAAGCTAAG 57.311 39.130 0.00 0.00 0.00 2.18
3120 6075 4.518970 TGTAAGGTCAAGCAAAAGCTAAGG 59.481 41.667 0.00 0.00 0.00 2.69
3121 6076 3.508845 AGGTCAAGCAAAAGCTAAGGA 57.491 42.857 0.00 0.00 0.00 3.36
3122 6077 3.832527 AGGTCAAGCAAAAGCTAAGGAA 58.167 40.909 0.00 0.00 0.00 3.36
3125 6080 4.984785 GGTCAAGCAAAAGCTAAGGAAAAG 59.015 41.667 0.00 0.00 0.00 2.27
3126 6081 5.221244 GGTCAAGCAAAAGCTAAGGAAAAGA 60.221 40.000 0.00 0.00 0.00 2.52
3129 6084 6.040842 TCAAGCAAAAGCTAAGGAAAAGACAT 59.959 34.615 0.00 0.00 0.00 3.06
3131 6086 7.150783 AGCAAAAGCTAAGGAAAAGACATAG 57.849 36.000 0.00 0.00 0.00 2.23
3133 6088 7.448469 AGCAAAAGCTAAGGAAAAGACATAGAA 59.552 33.333 0.00 0.00 0.00 2.10
3134 6089 8.246871 GCAAAAGCTAAGGAAAAGACATAGAAT 58.753 33.333 0.00 0.00 0.00 2.40
3135 6090 9.565213 CAAAAGCTAAGGAAAAGACATAGAATG 57.435 33.333 0.00 0.00 0.00 2.67
3137 6092 8.870075 AAGCTAAGGAAAAGACATAGAATGTT 57.130 30.769 0.00 0.00 45.03 2.71
3140 7614 8.730680 GCTAAGGAAAAGACATAGAATGTTCAA 58.269 33.333 0.00 0.00 45.03 2.69
3143 7617 8.115490 AGGAAAAGACATAGAATGTTCAAAGG 57.885 34.615 0.00 0.00 45.03 3.11
3144 7618 7.944554 AGGAAAAGACATAGAATGTTCAAAGGA 59.055 33.333 0.00 0.00 45.03 3.36
3151 7625 8.250143 ACATAGAATGTTCAAAGGAAAAACCT 57.750 30.769 0.00 0.00 46.40 3.50
3159 7633 4.813346 GGAAAAACCTCCAGGCGA 57.187 55.556 0.00 0.00 39.32 5.54
3162 7636 0.536460 GAAAAACCTCCAGGCGACCA 60.536 55.000 0.00 0.00 39.32 4.02
3167 7641 1.450312 CCTCCAGGCGACCATTCAC 60.450 63.158 0.00 0.00 0.00 3.18
3170 7644 0.109532 TCCAGGCGACCATTCACAAA 59.890 50.000 0.00 0.00 0.00 2.83
3171 7645 1.176527 CCAGGCGACCATTCACAAAT 58.823 50.000 0.00 0.00 0.00 2.32
3172 7646 1.133025 CCAGGCGACCATTCACAAATC 59.867 52.381 0.00 0.00 0.00 2.17
3173 7647 1.811965 CAGGCGACCATTCACAAATCA 59.188 47.619 0.00 0.00 0.00 2.57
3176 7650 2.480073 GGCGACCATTCACAAATCATGG 60.480 50.000 0.00 0.00 42.92 3.66
3177 7651 2.480073 GCGACCATTCACAAATCATGGG 60.480 50.000 2.61 0.00 41.74 4.00
3178 7652 2.480073 CGACCATTCACAAATCATGGGC 60.480 50.000 2.61 0.00 42.13 5.36
3179 7653 2.496871 GACCATTCACAAATCATGGGCA 59.503 45.455 0.00 0.00 44.63 5.36
3180 7654 2.498481 ACCATTCACAAATCATGGGCAG 59.502 45.455 2.61 0.00 41.74 4.85
3181 7655 2.159014 CCATTCACAAATCATGGGCAGG 60.159 50.000 0.00 0.00 34.80 4.85
3182 7656 0.896923 TTCACAAATCATGGGCAGGC 59.103 50.000 0.00 0.00 30.09 4.85
3183 7657 0.251698 TCACAAATCATGGGCAGGCA 60.252 50.000 0.00 0.00 30.09 4.75
3185 7659 1.002201 CACAAATCATGGGCAGGCAAA 59.998 47.619 0.00 0.00 0.00 3.68
3186 7660 1.910671 ACAAATCATGGGCAGGCAAAT 59.089 42.857 0.00 0.00 0.00 2.32
3187 7661 3.106054 ACAAATCATGGGCAGGCAAATA 58.894 40.909 0.00 0.00 0.00 1.40
3188 7662 3.712733 ACAAATCATGGGCAGGCAAATAT 59.287 39.130 0.00 0.00 0.00 1.28
3189 7663 4.164604 ACAAATCATGGGCAGGCAAATATT 59.835 37.500 0.00 0.00 0.00 1.28
3190 7664 4.612264 AATCATGGGCAGGCAAATATTC 57.388 40.909 0.00 0.00 0.00 1.75
3192 7666 4.451891 TCATGGGCAGGCAAATATTCTA 57.548 40.909 0.00 0.00 0.00 2.10
3195 7669 2.091939 TGGGCAGGCAAATATTCTAGCA 60.092 45.455 0.00 0.00 0.00 3.49
3196 7670 2.555757 GGGCAGGCAAATATTCTAGCAG 59.444 50.000 0.00 3.62 0.00 4.24
3198 7672 3.251972 GGCAGGCAAATATTCTAGCAGTC 59.748 47.826 8.98 1.08 0.00 3.51
3199 7673 4.133078 GCAGGCAAATATTCTAGCAGTCT 58.867 43.478 8.98 0.00 0.00 3.24
3200 7674 4.024218 GCAGGCAAATATTCTAGCAGTCTG 60.024 45.833 0.00 0.00 0.00 3.51
3201 7675 4.024218 CAGGCAAATATTCTAGCAGTCTGC 60.024 45.833 17.48 17.48 45.46 4.26
3216 7690 6.777526 GCAGTCTGCAGTCCTATTTATTAG 57.222 41.667 20.16 0.00 44.26 1.73
3217 7691 6.284459 GCAGTCTGCAGTCCTATTTATTAGT 58.716 40.000 20.16 0.00 44.26 2.24
3218 7692 6.763610 GCAGTCTGCAGTCCTATTTATTAGTT 59.236 38.462 20.16 0.00 44.26 2.24
3219 7693 7.042389 GCAGTCTGCAGTCCTATTTATTAGTTC 60.042 40.741 20.16 0.00 44.26 3.01
3220 7694 8.200792 CAGTCTGCAGTCCTATTTATTAGTTCT 58.799 37.037 14.67 0.00 0.00 3.01
3223 7697 9.383519 TCTGCAGTCCTATTTATTAGTTCTTTG 57.616 33.333 14.67 0.00 0.00 2.77
3224 7698 9.383519 CTGCAGTCCTATTTATTAGTTCTTTGA 57.616 33.333 5.25 0.00 0.00 2.69
3225 7699 9.383519 TGCAGTCCTATTTATTAGTTCTTTGAG 57.616 33.333 0.00 0.00 0.00 3.02
3237 7711 5.604010 AGTTCTTTGAGATGAGCTTTTCG 57.396 39.130 0.00 0.00 0.00 3.46
3242 7716 2.964740 TGAGATGAGCTTTTCGACCTG 58.035 47.619 0.00 0.00 0.00 4.00
3263 8002 2.353579 GGCATTTGATTTCTTGCATGGC 59.646 45.455 0.00 0.00 36.82 4.40
3289 8028 8.429493 TGATAACTGTGATGATTGTGATTCTC 57.571 34.615 0.00 0.00 0.00 2.87
3335 8074 9.771534 CAAAATCCCAATTCTAAAGGTGTAAAA 57.228 29.630 0.00 0.00 0.00 1.52
3350 8089 7.739498 AGGTGTAAAAATATCTTTGTGTCGT 57.261 32.000 0.00 0.00 0.00 4.34
3372 8111 5.291614 CGTTTGGGATCTTTGCCATAAAATG 59.708 40.000 0.00 0.00 43.66 2.32
3391 8133 7.637631 AAAATGTTGGCAATTTTGGTTTACT 57.362 28.000 1.92 0.00 0.00 2.24
3416 8158 6.175471 TCTGAGCTTGAAGAATATGCTTTCA 58.825 36.000 0.00 0.00 33.83 2.69
3417 8159 6.827251 TCTGAGCTTGAAGAATATGCTTTCAT 59.173 34.615 0.00 0.00 33.83 2.57
3452 8194 5.700402 ACCTTAATGTTCCTCACTATGCT 57.300 39.130 0.00 0.00 0.00 3.79
3453 8195 5.675538 ACCTTAATGTTCCTCACTATGCTC 58.324 41.667 0.00 0.00 0.00 4.26
3460 8202 6.073327 TGTTCCTCACTATGCTCTTATACG 57.927 41.667 0.00 0.00 0.00 3.06
3462 8204 6.320418 TGTTCCTCACTATGCTCTTATACGAA 59.680 38.462 0.00 0.00 0.00 3.85
3466 8208 7.867909 TCCTCACTATGCTCTTATACGAAAATG 59.132 37.037 0.00 0.00 0.00 2.32
3467 8209 7.867909 CCTCACTATGCTCTTATACGAAAATGA 59.132 37.037 0.00 0.00 0.00 2.57
3475 8478 7.985184 TGCTCTTATACGAAAATGAACCTGTAT 59.015 33.333 0.00 0.00 0.00 2.29
3482 8485 6.092748 ACGAAAATGAACCTGTATTTCATGC 58.907 36.000 0.00 0.00 41.81 4.06
3487 8490 8.579850 AAATGAACCTGTATTTCATGCTCTTA 57.420 30.769 0.00 0.00 41.81 2.10
3506 8509 8.739972 TGCTCTTATAAATTTTCTTTCCCTGAC 58.260 33.333 0.00 0.00 0.00 3.51
3539 8542 5.091261 ACACCCAGCTTCTGTTAGATAAG 57.909 43.478 0.00 0.00 0.00 1.73
3541 8544 3.118223 ACCCAGCTTCTGTTAGATAAGCC 60.118 47.826 0.00 0.00 45.32 4.35
3543 8546 4.517285 CCAGCTTCTGTTAGATAAGCCAA 58.483 43.478 0.00 0.00 45.32 4.52
3544 8547 4.943705 CCAGCTTCTGTTAGATAAGCCAAA 59.056 41.667 0.00 0.00 45.32 3.28
3545 8548 5.065731 CCAGCTTCTGTTAGATAAGCCAAAG 59.934 44.000 0.00 0.00 45.32 2.77
3547 8550 6.818644 CAGCTTCTGTTAGATAAGCCAAAGTA 59.181 38.462 0.00 0.00 45.32 2.24
3548 8551 7.497249 CAGCTTCTGTTAGATAAGCCAAAGTAT 59.503 37.037 0.00 0.00 45.32 2.12
3549 8552 8.049721 AGCTTCTGTTAGATAAGCCAAAGTATT 58.950 33.333 0.00 0.00 45.32 1.89
3550 8553 9.326413 GCTTCTGTTAGATAAGCCAAAGTATTA 57.674 33.333 0.00 0.00 39.74 0.98
3555 8558 9.391006 TGTTAGATAAGCCAAAGTATTACAAGG 57.609 33.333 0.00 0.00 0.00 3.61
3556 8559 9.392259 GTTAGATAAGCCAAAGTATTACAAGGT 57.608 33.333 0.00 0.00 0.00 3.50
3564 8567 9.959721 AGCCAAAGTATTACAAGGTATATATGG 57.040 33.333 0.00 0.00 0.00 2.74
3579 8680 8.713971 AGGTATATATGGAGAAATGTGTCACAA 58.286 33.333 10.28 0.00 0.00 3.33
3606 8707 7.798710 ATAGATGGGTAGCATAACTATGTGT 57.201 36.000 0.00 0.00 25.46 3.72
3608 8709 4.316205 TGGGTAGCATAACTATGTGTCG 57.684 45.455 0.00 0.00 36.11 4.35
3614 8715 6.311935 GGTAGCATAACTATGTGTCGAAAACA 59.688 38.462 4.79 4.79 36.11 2.83
3708 8829 2.894126 TCTTTCTCTCGAAGTCCAAGCT 59.106 45.455 0.00 0.00 0.00 3.74
3709 8830 2.732412 TTCTCTCGAAGTCCAAGCTG 57.268 50.000 0.00 0.00 0.00 4.24
3710 8831 1.911057 TCTCTCGAAGTCCAAGCTGA 58.089 50.000 0.00 0.00 0.00 4.26
3711 8832 1.815613 TCTCTCGAAGTCCAAGCTGAG 59.184 52.381 0.00 0.00 0.00 3.35
3712 8833 0.244994 TCTCGAAGTCCAAGCTGAGC 59.755 55.000 0.00 0.00 0.00 4.26
3773 9013 7.990886 AGGATTTCAGTTTGTCTTGTACTTACA 59.009 33.333 0.00 0.00 0.00 2.41
3808 9048 4.804108 TGTATAACTGTTTGGTGCAATGC 58.196 39.130 0.00 0.00 0.00 3.56
3809 9049 4.279420 TGTATAACTGTTTGGTGCAATGCA 59.721 37.500 2.72 2.72 35.60 3.96
3819 9059 3.070429 GGTGCAATGCAGTATTGTAGC 57.930 47.619 8.73 13.90 46.94 3.58
3983 9267 7.589958 TTTAGTTGAAGGGAACAATGCTTTA 57.410 32.000 0.00 0.00 0.00 1.85
4143 9434 5.178797 CCACGAGTTCTGAATTCCATAACT 58.821 41.667 13.81 13.81 42.59 2.24
4144 9435 5.643777 CCACGAGTTCTGAATTCCATAACTT 59.356 40.000 14.64 2.59 40.78 2.66
4145 9436 6.816640 CCACGAGTTCTGAATTCCATAACTTA 59.183 38.462 14.64 0.00 40.78 2.24
4146 9437 7.201530 CCACGAGTTCTGAATTCCATAACTTAC 60.202 40.741 14.64 6.19 40.78 2.34
4147 9438 7.545965 CACGAGTTCTGAATTCCATAACTTACT 59.454 37.037 14.64 3.82 40.78 2.24
4148 9439 8.095169 ACGAGTTCTGAATTCCATAACTTACTT 58.905 33.333 14.64 0.57 40.78 2.24
4149 9440 8.936864 CGAGTTCTGAATTCCATAACTTACTTT 58.063 33.333 14.64 0.00 40.78 2.66
4306 9597 2.373335 TTGGGGTATGCACACACTTT 57.627 45.000 0.00 0.00 0.00 2.66
4466 9771 7.720957 TGCCAATATTATTTCTGTAGTCTGCAT 59.279 33.333 0.00 0.00 0.00 3.96
4467 9772 8.233190 GCCAATATTATTTCTGTAGTCTGCATC 58.767 37.037 0.00 0.00 0.00 3.91
4468 9773 9.276590 CCAATATTATTTCTGTAGTCTGCATCA 57.723 33.333 0.00 0.00 0.00 3.07
4470 9775 6.857777 ATTATTTCTGTAGTCTGCATCAGC 57.142 37.500 0.00 0.00 42.57 4.26
4471 9776 2.680312 TTCTGTAGTCTGCATCAGCC 57.320 50.000 0.00 0.00 41.13 4.85
4472 9777 1.857965 TCTGTAGTCTGCATCAGCCT 58.142 50.000 0.00 0.00 41.13 4.58
4473 9778 2.182827 TCTGTAGTCTGCATCAGCCTT 58.817 47.619 0.00 0.00 41.13 4.35
4474 9779 2.568956 TCTGTAGTCTGCATCAGCCTTT 59.431 45.455 0.00 0.00 41.13 3.11
4475 9780 3.008375 TCTGTAGTCTGCATCAGCCTTTT 59.992 43.478 0.00 0.00 41.13 2.27
4476 9781 3.338249 TGTAGTCTGCATCAGCCTTTTC 58.662 45.455 0.00 0.00 41.13 2.29
4477 9782 2.875094 AGTCTGCATCAGCCTTTTCT 57.125 45.000 0.00 0.00 41.13 2.52
4581 9886 5.268387 TGAGGCCATGTTATGTTATTGGTT 58.732 37.500 5.01 0.00 0.00 3.67
4789 10094 3.861840 TCGTATTTGGAGCTTGGAAGAG 58.138 45.455 0.00 0.00 0.00 2.85
4831 10136 3.826157 CAGCAGTTAAGGGGTTGAAATCA 59.174 43.478 0.00 0.00 0.00 2.57
4853 10158 3.012518 GAGTTGCAGAATACACAGGCAT 58.987 45.455 0.00 0.00 34.03 4.40
5068 10373 2.289694 GCTAGGGAAAGAGTTGTCTGCA 60.290 50.000 0.00 0.00 31.37 4.41
5098 10403 3.057596 CGGCATTTCTCAAGGCTGTAAAA 60.058 43.478 0.00 0.00 40.54 1.52
5248 10553 3.265791 CAAGACTGATAAGCTGGTGGTC 58.734 50.000 0.00 0.00 0.00 4.02
5400 10705 3.944015 AGATCAAGCAACTTCTATGGTGC 59.056 43.478 0.00 0.00 0.00 5.01
5419 10724 5.470777 TGGTGCTAACAAACATACTGGTAAC 59.529 40.000 0.00 0.00 0.00 2.50
5488 10793 3.264450 ACTTAAATGGAGCCACTAGTGCT 59.736 43.478 17.86 17.07 43.03 4.40
5750 11055 0.247460 AGCACAGCTGCATACTTCGA 59.753 50.000 15.27 0.00 46.97 3.71
5827 11132 3.476552 TGAAACAGTCATGACCCAAGTC 58.523 45.455 22.21 13.36 43.83 3.01
5945 11253 3.818961 ATCAGTTTCGTGAATGTGCTG 57.181 42.857 0.00 0.00 0.00 4.41
5962 11270 1.592081 GCTGCTTCAAGCGATCTACTG 59.408 52.381 4.57 0.00 46.26 2.74
6091 11399 1.409802 CCATCCTGGCAGCTGAAGAAT 60.410 52.381 20.43 0.00 0.00 2.40
6097 11405 1.160137 GGCAGCTGAAGAATCAACGT 58.840 50.000 20.43 0.00 34.49 3.99
6144 11452 1.521681 GTGCTACCACAGGCGATCC 60.522 63.158 0.00 0.00 41.67 3.36
6197 11505 1.676529 AGAATCATCATCGGTCGTCGT 59.323 47.619 0.00 0.00 40.32 4.34
6218 11526 1.486310 TGGACCATGAAATCTCCGAGG 59.514 52.381 0.00 0.00 0.00 4.63
6322 11630 1.542187 GGATTAGGGCGTCGGGCTAT 61.542 60.000 0.00 0.00 42.94 2.97
6340 11648 1.588239 ATCCCCTGATCAGCACAAGA 58.412 50.000 17.76 8.72 0.00 3.02
6343 11651 1.681166 CCCCTGATCAGCACAAGAAGG 60.681 57.143 17.76 9.99 0.00 3.46
6344 11652 1.280133 CCCTGATCAGCACAAGAAGGA 59.720 52.381 17.76 0.00 0.00 3.36
6345 11653 2.290514 CCCTGATCAGCACAAGAAGGAA 60.291 50.000 17.76 0.00 0.00 3.36
6370 11684 4.047125 GCTGGCACCCTTGGGCTA 62.047 66.667 5.46 0.00 0.00 3.93
6395 11719 2.965572 CCATGCTGTGGTTTAATGGG 57.034 50.000 1.05 0.00 43.44 4.00
6399 11723 3.527507 TGCTGTGGTTTAATGGGGTTA 57.472 42.857 0.00 0.00 0.00 2.85
6409 11733 7.177041 GTGGTTTAATGGGGTTACATTGTAAGA 59.823 37.037 9.49 0.00 40.97 2.10
6415 11739 8.747538 AATGGGGTTACATTGTAAGATAAGAC 57.252 34.615 9.49 0.00 39.47 3.01
6418 11742 7.990886 TGGGGTTACATTGTAAGATAAGACATC 59.009 37.037 9.49 0.00 0.00 3.06
6454 11778 3.681961 AATTTCATGCGCGGCGGTG 62.682 57.895 25.03 0.00 0.00 4.94
6531 11868 4.337555 CCCTTGAGTAGATTTGCATCCTTG 59.662 45.833 0.00 0.00 0.00 3.61
6597 11937 3.259902 GGACTTTCGGTAATCACCTGTC 58.740 50.000 0.00 0.00 43.33 3.51
6614 11954 7.153315 TCACCTGTCGTTGTAATGTTTGTATA 58.847 34.615 0.00 0.00 0.00 1.47
6649 11997 3.130693 GTGCCGATGTAGAAGTAGGAACT 59.869 47.826 0.00 0.00 46.37 3.01
6658 12006 3.599348 AGAAGTAGGAACTTGAACCCCT 58.401 45.455 0.00 0.00 46.09 4.79
6659 12007 3.328050 AGAAGTAGGAACTTGAACCCCTG 59.672 47.826 0.00 0.00 46.09 4.45
6660 12008 2.702748 AGTAGGAACTTGAACCCCTGT 58.297 47.619 0.00 0.00 41.75 4.00
6661 12009 2.372172 AGTAGGAACTTGAACCCCTGTG 59.628 50.000 0.00 0.00 41.75 3.66
6662 12010 0.178990 AGGAACTTGAACCCCTGTGC 60.179 55.000 0.00 0.00 27.25 4.57
6663 12011 0.178990 GGAACTTGAACCCCTGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
6664 12012 1.692411 GAACTTGAACCCCTGTGCTT 58.308 50.000 0.00 0.00 0.00 3.91
6665 12013 1.338020 GAACTTGAACCCCTGTGCTTG 59.662 52.381 0.00 0.00 0.00 4.01
6667 12015 1.242076 CTTGAACCCCTGTGCTTGAG 58.758 55.000 0.00 0.00 0.00 3.02
6668 12016 0.843309 TTGAACCCCTGTGCTTGAGA 59.157 50.000 0.00 0.00 0.00 3.27
6669 12017 0.843309 TGAACCCCTGTGCTTGAGAA 59.157 50.000 0.00 0.00 0.00 2.87
6670 12018 1.202806 TGAACCCCTGTGCTTGAGAAG 60.203 52.381 0.00 0.00 0.00 2.85
6672 12020 1.140312 ACCCCTGTGCTTGAGAAGAA 58.860 50.000 0.00 0.00 0.00 2.52
6673 12021 1.494721 ACCCCTGTGCTTGAGAAGAAA 59.505 47.619 0.00 0.00 0.00 2.52
6674 12022 2.157738 CCCCTGTGCTTGAGAAGAAAG 58.842 52.381 0.00 0.00 0.00 2.62
6683 12031 4.294232 GCTTGAGAAGAAAGCTTGAAACC 58.706 43.478 0.00 0.00 45.31 3.27
6684 12032 4.794329 GCTTGAGAAGAAAGCTTGAAACCC 60.794 45.833 0.00 0.00 45.31 4.11
6685 12033 3.222603 TGAGAAGAAAGCTTGAAACCCC 58.777 45.455 0.00 0.00 33.61 4.95
6686 12034 3.117512 TGAGAAGAAAGCTTGAAACCCCT 60.118 43.478 0.00 0.00 33.61 4.79
6687 12035 3.225940 AGAAGAAAGCTTGAAACCCCTG 58.774 45.455 0.00 0.00 33.61 4.45
6688 12036 3.117512 AGAAGAAAGCTTGAAACCCCTGA 60.118 43.478 0.00 0.00 33.61 3.86
6689 12037 3.312736 AGAAAGCTTGAAACCCCTGAA 57.687 42.857 0.00 0.00 0.00 3.02
6690 12038 3.225940 AGAAAGCTTGAAACCCCTGAAG 58.774 45.455 0.00 0.00 0.00 3.02
6752 12100 0.387112 TGCTTGAATTTTCAGCGCGG 60.387 50.000 8.83 0.00 38.61 6.46
6778 12126 7.537649 GTCTTGCAACGATCGTCTGATTATATA 59.462 37.037 22.98 0.00 34.09 0.86
6850 12283 2.215196 GCTACGTGACCAAACCAAAGA 58.785 47.619 0.00 0.00 0.00 2.52
6887 12320 2.747855 GCAGCAGTACACCAGCCC 60.748 66.667 0.00 0.00 0.00 5.19
6902 12335 3.277715 CCAGCCCAAATTGTGTGTTTTT 58.722 40.909 0.00 0.00 0.00 1.94
6904 12337 4.190772 CAGCCCAAATTGTGTGTTTTTCT 58.809 39.130 0.00 0.00 0.00 2.52
6905 12338 4.635324 CAGCCCAAATTGTGTGTTTTTCTT 59.365 37.500 0.00 0.00 0.00 2.52
6906 12339 5.123661 CAGCCCAAATTGTGTGTTTTTCTTT 59.876 36.000 0.00 0.00 0.00 2.52
6907 12340 5.709631 AGCCCAAATTGTGTGTTTTTCTTTT 59.290 32.000 0.00 0.00 0.00 2.27
6908 12341 6.208402 AGCCCAAATTGTGTGTTTTTCTTTTT 59.792 30.769 0.00 0.00 0.00 1.94
6909 12342 6.526325 GCCCAAATTGTGTGTTTTTCTTTTTC 59.474 34.615 0.00 0.00 0.00 2.29
6969 12452 2.632987 AGGGAGTTGTTTAGCGTTGT 57.367 45.000 0.00 0.00 0.00 3.32
7086 12574 2.550180 GCACACCTCTTTCCTGAGAAAC 59.450 50.000 0.00 0.00 37.07 2.78
7126 12614 3.787001 GGCGGAACCCTAGCAGCT 61.787 66.667 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.958822 AGGTAAGCCCTTTTTGTGCG 59.041 50.000 0.00 0.00 42.73 5.34
2 3 2.888414 TGTAGGTAAGCCCTTTTTGTGC 59.112 45.455 0.00 0.00 42.73 4.57
7 8 9.763837 AAACTAAATATGTAGGTAAGCCCTTTT 57.236 29.630 4.91 0.00 42.73 2.27
8 9 9.185680 CAAACTAAATATGTAGGTAAGCCCTTT 57.814 33.333 4.91 0.00 42.73 3.11
9 10 7.778382 CCAAACTAAATATGTAGGTAAGCCCTT 59.222 37.037 4.91 0.00 42.73 3.95
11 12 6.016527 GCCAAACTAAATATGTAGGTAAGCCC 60.017 42.308 4.91 0.00 34.57 5.19
12 13 6.544564 TGCCAAACTAAATATGTAGGTAAGCC 59.455 38.462 4.91 0.00 0.00 4.35
16 17 8.322828 TGTCTTGCCAAACTAAATATGTAGGTA 58.677 33.333 4.91 0.00 0.00 3.08
18 19 7.624360 TGTCTTGCCAAACTAAATATGTAGG 57.376 36.000 4.91 0.00 0.00 3.18
21 22 7.331687 GCATTTGTCTTGCCAAACTAAATATGT 59.668 33.333 0.00 0.00 37.16 2.29
23 24 7.832503 GCATTTGTCTTGCCAAACTAAATAT 57.167 32.000 0.00 0.00 37.16 1.28
36 37 4.157105 TCTCATGTCATGGCATTTGTCTTG 59.843 41.667 10.85 0.00 0.00 3.02
52 53 7.765695 ATTTGTCTTACCAAATGTCTCATGT 57.234 32.000 0.00 0.00 42.04 3.21
68 77 0.036765 TAGGCGTCCGCATTTGTCTT 60.037 50.000 14.19 0.00 44.11 3.01
91 100 1.858458 TCTTCGTGTTCTGTTTGAGCG 59.142 47.619 0.00 0.00 0.00 5.03
101 110 2.673833 AGATCGTTGGTCTTCGTGTTC 58.326 47.619 0.00 0.00 0.00 3.18
111 120 5.105228 TCGTAGGGATAAAAAGATCGTTGGT 60.105 40.000 0.00 0.00 0.00 3.67
142 151 1.153349 GAAAGAGGATTCCCGCGCT 60.153 57.895 5.56 0.00 37.33 5.92
157 166 4.380339 CGTCAATGCAGAGAGAGAGAGAAA 60.380 45.833 0.00 0.00 0.00 2.52
158 167 3.128415 CGTCAATGCAGAGAGAGAGAGAA 59.872 47.826 0.00 0.00 0.00 2.87
238 250 2.512286 GCACCGCTGCTGCAGATA 60.512 61.111 32.30 4.20 40.63 1.98
271 283 5.239525 ACAGTAGAGCAAACCAAGAAACATC 59.760 40.000 0.00 0.00 0.00 3.06
316 328 2.890766 GCCCGTTCCAGTTCCAGGA 61.891 63.158 0.00 0.00 0.00 3.86
317 329 2.359975 GCCCGTTCCAGTTCCAGG 60.360 66.667 0.00 0.00 0.00 4.45
334 597 3.203161 TCTGAGACGTGACGAAATCTG 57.797 47.619 13.70 10.22 0.00 2.90
612 2847 4.222847 CGTAGCCTCCGCCTTCCC 62.223 72.222 0.00 0.00 34.57 3.97
615 2850 2.768492 CGTACGTAGCCTCCGCCTT 61.768 63.158 7.22 0.00 34.57 4.35
616 2851 3.207669 CGTACGTAGCCTCCGCCT 61.208 66.667 7.22 0.00 34.57 5.52
628 2863 3.607987 GCTAGCGCTGCACGTACG 61.608 66.667 22.90 15.01 46.11 3.67
652 2887 0.313987 CACTCACTCACTACACCGCA 59.686 55.000 0.00 0.00 0.00 5.69
657 2892 5.982890 TGATTGATCACTCACTCACTACA 57.017 39.130 11.43 0.00 36.48 2.74
662 2901 6.646267 TGATTGATGATTGATCACTCACTCA 58.354 36.000 17.06 16.86 42.72 3.41
748 2992 1.164041 CGCGGTGTGAAGGGAAAAGT 61.164 55.000 0.00 0.00 0.00 2.66
779 3023 2.618709 CGGGAGGCATGGAGTATTTTTC 59.381 50.000 0.00 0.00 0.00 2.29
780 3024 2.654863 CGGGAGGCATGGAGTATTTTT 58.345 47.619 0.00 0.00 0.00 1.94
782 3026 0.179018 GCGGGAGGCATGGAGTATTT 60.179 55.000 0.00 0.00 42.87 1.40
783 3027 1.451936 GCGGGAGGCATGGAGTATT 59.548 57.895 0.00 0.00 42.87 1.89
784 3028 3.151906 GCGGGAGGCATGGAGTAT 58.848 61.111 0.00 0.00 42.87 2.12
802 3046 3.658705 AGTAGGATCCCAGGAGTAGTAGG 59.341 52.174 8.55 0.00 0.00 3.18
808 3052 0.399233 GGCAGTAGGATCCCAGGAGT 60.399 60.000 8.55 0.00 0.00 3.85
809 3053 1.467678 CGGCAGTAGGATCCCAGGAG 61.468 65.000 8.55 0.00 0.00 3.69
810 3054 1.457643 CGGCAGTAGGATCCCAGGA 60.458 63.158 8.55 0.00 0.00 3.86
839 3083 0.107456 CTTGTGCTGTCTCCCTGTGT 59.893 55.000 0.00 0.00 0.00 3.72
863 3107 2.125350 CCTGCGTCCTCAGCTTCC 60.125 66.667 0.00 0.00 35.28 3.46
885 3129 0.835941 CTGACTAGGGAGCTGCCATT 59.164 55.000 27.56 9.33 38.95 3.16
897 3141 4.594970 TCTTCCTTGGACTCTCTGACTAG 58.405 47.826 0.00 0.00 0.00 2.57
931 3175 1.228988 CCTCCCCTGCCTGCTTTTT 60.229 57.895 0.00 0.00 0.00 1.94
937 3181 3.415087 CTTCCCCTCCCCTGCCTG 61.415 72.222 0.00 0.00 0.00 4.85
938 3182 4.767892 CCTTCCCCTCCCCTGCCT 62.768 72.222 0.00 0.00 0.00 4.75
984 3234 1.153823 CATGGCTGCTCTTGCTTGC 60.154 57.895 0.00 0.00 40.48 4.01
985 3235 0.963856 TCCATGGCTGCTCTTGCTTG 60.964 55.000 6.96 0.00 40.48 4.01
990 3240 0.835941 CTACCTCCATGGCTGCTCTT 59.164 55.000 6.96 0.00 40.22 2.85
991 3241 0.031716 TCTACCTCCATGGCTGCTCT 60.032 55.000 6.96 0.00 40.22 4.09
992 3242 0.392336 CTCTACCTCCATGGCTGCTC 59.608 60.000 6.96 0.00 40.22 4.26
1296 3598 1.109920 CGACGTCCTGGATCTCCCAT 61.110 60.000 10.58 0.00 45.57 4.00
1523 3828 2.363306 ATGGAGTTGTTGTGGCAGAA 57.637 45.000 0.00 0.00 0.00 3.02
1524 3829 3.719268 ATATGGAGTTGTTGTGGCAGA 57.281 42.857 0.00 0.00 0.00 4.26
1525 3830 4.260985 TGTATATGGAGTTGTTGTGGCAG 58.739 43.478 0.00 0.00 0.00 4.85
1526 3831 4.293662 TGTATATGGAGTTGTTGTGGCA 57.706 40.909 0.00 0.00 0.00 4.92
1527 3832 6.055588 AGTATGTATATGGAGTTGTTGTGGC 58.944 40.000 0.00 0.00 0.00 5.01
1528 3833 7.500992 AGAGTATGTATATGGAGTTGTTGTGG 58.499 38.462 0.00 0.00 0.00 4.17
1529 3834 9.464714 GTAGAGTATGTATATGGAGTTGTTGTG 57.535 37.037 0.00 0.00 0.00 3.33
1540 3845 9.828039 ATGATGCCAATGTAGAGTATGTATATG 57.172 33.333 0.00 0.00 0.00 1.78
1669 3978 2.064762 GAAGCAGCAGCCTATGATACG 58.935 52.381 0.00 0.00 43.56 3.06
1670 3979 3.399440 AGAAGCAGCAGCCTATGATAC 57.601 47.619 0.00 0.00 43.56 2.24
1671 3980 3.389002 TCAAGAAGCAGCAGCCTATGATA 59.611 43.478 0.00 0.00 43.56 2.15
1672 3981 2.172082 TCAAGAAGCAGCAGCCTATGAT 59.828 45.455 0.00 0.00 43.56 2.45
1678 3987 1.461559 AATCTCAAGAAGCAGCAGCC 58.538 50.000 0.00 0.00 43.56 4.85
1715 4030 4.576463 ACATTGCGGCTAGGATTTTTCTAG 59.424 41.667 2.68 0.00 37.76 2.43
1716 4031 4.335315 CACATTGCGGCTAGGATTTTTCTA 59.665 41.667 2.68 0.00 0.00 2.10
1717 4032 3.129287 CACATTGCGGCTAGGATTTTTCT 59.871 43.478 2.68 0.00 0.00 2.52
1718 4033 3.438360 CACATTGCGGCTAGGATTTTTC 58.562 45.455 2.68 0.00 0.00 2.29
1719 4034 2.417243 GCACATTGCGGCTAGGATTTTT 60.417 45.455 2.68 0.00 31.71 1.94
1798 4113 2.020836 ATCGAATCGAACAACGCGGC 62.021 55.000 10.12 0.00 39.99 6.53
1980 4300 6.460814 CCCGATTCATGTGCCAAAAATATGTA 60.461 38.462 0.00 0.00 0.00 2.29
1984 4304 3.430098 GCCCGATTCATGTGCCAAAAATA 60.430 43.478 0.00 0.00 0.00 1.40
2058 4382 7.606456 TCAGTGGTAAATTTCAGGACATTCTAC 59.394 37.037 0.00 0.00 0.00 2.59
2198 4522 2.679837 ACTTGTTTGAGTGACAGTGCAG 59.320 45.455 0.00 0.00 0.00 4.41
2207 4531 5.418310 ACGGTTGATAACTTGTTTGAGTG 57.582 39.130 0.00 0.00 0.00 3.51
2220 4551 7.844493 AAACCTCTACCATATACGGTTGATA 57.156 36.000 2.64 0.00 39.56 2.15
2296 4627 2.886862 TGTGCCAAAACCATGAGTTG 57.113 45.000 0.00 0.00 39.19 3.16
2318 4650 0.804989 GTGCGTGGAAGCTTGCTATT 59.195 50.000 19.34 0.00 38.13 1.73
2359 4694 3.099905 CTGAAGGACTGGAGTATCACCA 58.900 50.000 0.00 0.00 36.25 4.17
2360 4695 3.366396 TCTGAAGGACTGGAGTATCACC 58.634 50.000 0.00 0.00 36.25 4.02
2361 4696 4.892934 AGATCTGAAGGACTGGAGTATCAC 59.107 45.833 0.00 0.00 36.25 3.06
2362 4697 5.103728 AGAGATCTGAAGGACTGGAGTATCA 60.104 44.000 0.00 0.00 36.25 2.15
2363 4698 5.385198 AGAGATCTGAAGGACTGGAGTATC 58.615 45.833 0.00 0.00 0.00 2.24
2365 4700 4.476846 AGAGAGATCTGAAGGACTGGAGTA 59.523 45.833 0.00 0.00 0.00 2.59
2366 4701 3.269381 AGAGAGATCTGAAGGACTGGAGT 59.731 47.826 0.00 0.00 0.00 3.85
2367 4702 3.902218 AGAGAGATCTGAAGGACTGGAG 58.098 50.000 0.00 0.00 0.00 3.86
2368 4703 4.329638 AAGAGAGATCTGAAGGACTGGA 57.670 45.455 0.00 0.00 0.00 3.86
2370 4705 6.033341 CGTAAAAGAGAGATCTGAAGGACTG 58.967 44.000 0.00 0.00 0.00 3.51
2371 4706 5.126384 CCGTAAAAGAGAGATCTGAAGGACT 59.874 44.000 0.00 0.00 0.00 3.85
2373 4708 5.125739 GTCCGTAAAAGAGAGATCTGAAGGA 59.874 44.000 0.00 0.00 0.00 3.36
2374 4709 5.105716 TGTCCGTAAAAGAGAGATCTGAAGG 60.106 44.000 0.00 0.00 0.00 3.46
2375 4710 5.802956 GTGTCCGTAAAAGAGAGATCTGAAG 59.197 44.000 0.00 0.00 0.00 3.02
2377 4712 4.158025 GGTGTCCGTAAAAGAGAGATCTGA 59.842 45.833 0.00 0.00 0.00 3.27
2378 4713 4.158764 AGGTGTCCGTAAAAGAGAGATCTG 59.841 45.833 0.00 0.00 0.00 2.90
2379 4714 4.158764 CAGGTGTCCGTAAAAGAGAGATCT 59.841 45.833 0.00 0.00 0.00 2.75
2380 4715 4.082136 ACAGGTGTCCGTAAAAGAGAGATC 60.082 45.833 0.00 0.00 0.00 2.75
2381 4716 3.833070 ACAGGTGTCCGTAAAAGAGAGAT 59.167 43.478 0.00 0.00 0.00 2.75
2382 4717 3.228453 ACAGGTGTCCGTAAAAGAGAGA 58.772 45.455 0.00 0.00 0.00 3.10
2384 4719 2.960384 TGACAGGTGTCCGTAAAAGAGA 59.040 45.455 7.64 0.00 44.15 3.10
2385 4720 3.380479 TGACAGGTGTCCGTAAAAGAG 57.620 47.619 7.64 0.00 44.15 2.85
2386 4721 3.070446 ACATGACAGGTGTCCGTAAAAGA 59.930 43.478 7.64 0.00 44.15 2.52
2387 4722 3.399330 ACATGACAGGTGTCCGTAAAAG 58.601 45.455 7.64 0.00 44.15 2.27
2388 4723 3.181464 TGACATGACAGGTGTCCGTAAAA 60.181 43.478 7.64 0.00 44.10 1.52
2389 4724 2.365941 TGACATGACAGGTGTCCGTAAA 59.634 45.455 7.64 0.00 44.10 2.01
2391 4726 1.623163 TGACATGACAGGTGTCCGTA 58.377 50.000 7.64 0.00 44.10 4.02
2393 4728 1.270305 ACTTGACATGACAGGTGTCCG 60.270 52.381 11.79 1.88 44.10 4.79
2394 4729 2.550830 ACTTGACATGACAGGTGTCC 57.449 50.000 11.79 0.00 44.10 4.02
2396 4731 2.483876 CGAACTTGACATGACAGGTGT 58.516 47.619 13.14 4.69 30.85 4.16
2397 4732 1.800586 CCGAACTTGACATGACAGGTG 59.199 52.381 13.14 2.84 30.85 4.00
2398 4733 1.416401 ACCGAACTTGACATGACAGGT 59.584 47.619 7.10 7.10 0.00 4.00
2399 4734 2.069273 GACCGAACTTGACATGACAGG 58.931 52.381 0.00 2.01 0.00 4.00
2400 4735 3.032017 AGACCGAACTTGACATGACAG 57.968 47.619 0.00 0.00 0.00 3.51
2401 4736 3.305813 GGTAGACCGAACTTGACATGACA 60.306 47.826 0.00 0.00 0.00 3.58
2402 4737 3.251571 GGTAGACCGAACTTGACATGAC 58.748 50.000 0.00 0.00 0.00 3.06
2403 4738 2.232941 GGGTAGACCGAACTTGACATGA 59.767 50.000 0.00 0.00 36.71 3.07
2404 4739 2.618053 GGGTAGACCGAACTTGACATG 58.382 52.381 0.00 0.00 36.71 3.21
2405 4740 1.553704 GGGGTAGACCGAACTTGACAT 59.446 52.381 0.00 0.00 41.60 3.06
2407 4742 3.828657 GGGGTAGACCGAACTTGAC 57.171 57.895 0.00 0.00 41.60 3.18
2417 4752 0.323178 TGTCAGAGGTCGGGGTAGAC 60.323 60.000 0.00 0.00 40.25 2.59
2418 4753 0.629596 ATGTCAGAGGTCGGGGTAGA 59.370 55.000 0.00 0.00 0.00 2.59
2419 4754 1.486211 AATGTCAGAGGTCGGGGTAG 58.514 55.000 0.00 0.00 0.00 3.18
2421 4756 2.040178 GATAATGTCAGAGGTCGGGGT 58.960 52.381 0.00 0.00 0.00 4.95
2422 4757 2.039418 TGATAATGTCAGAGGTCGGGG 58.961 52.381 0.00 0.00 31.80 5.73
2432 4767 3.686241 GCTGAAGTGTGCTGATAATGTCA 59.314 43.478 0.00 0.00 35.05 3.58
2433 4768 3.064545 GGCTGAAGTGTGCTGATAATGTC 59.935 47.826 0.00 0.00 0.00 3.06
2434 4769 3.012518 GGCTGAAGTGTGCTGATAATGT 58.987 45.455 0.00 0.00 0.00 2.71
2435 4770 2.031314 CGGCTGAAGTGTGCTGATAATG 59.969 50.000 0.00 0.00 37.75 1.90
2436 4771 2.283298 CGGCTGAAGTGTGCTGATAAT 58.717 47.619 0.00 0.00 37.75 1.28
2437 4772 1.001974 ACGGCTGAAGTGTGCTGATAA 59.998 47.619 0.00 0.00 38.78 1.75
2438 4773 0.608130 ACGGCTGAAGTGTGCTGATA 59.392 50.000 0.00 0.00 38.78 2.15
2441 4776 2.320587 GGACGGCTGAAGTGTGCTG 61.321 63.158 0.00 0.00 41.02 4.41
2442 4777 2.031163 GGACGGCTGAAGTGTGCT 59.969 61.111 0.00 0.00 0.00 4.40
2443 4778 3.414700 CGGACGGCTGAAGTGTGC 61.415 66.667 0.00 0.00 0.00 4.57
2501 5445 3.372206 CCAACATCGTCTGAGATGGTTTC 59.628 47.826 16.20 0.00 45.46 2.78
2633 5577 4.776349 ACATGTTCAACAGTTAGGTGTGA 58.224 39.130 0.00 0.00 35.97 3.58
2757 5706 1.891150 CACCAAGCTTCTGGCATTCTT 59.109 47.619 4.24 0.00 44.79 2.52
2776 5725 1.224315 CCGGATGGATGAAGTGGCA 59.776 57.895 0.00 0.00 37.49 4.92
2836 5785 4.806640 ATTTGGGGTCAATGCTACAAAG 57.193 40.909 0.00 0.00 32.24 2.77
2838 5787 4.578516 CGATATTTGGGGTCAATGCTACAA 59.421 41.667 0.00 0.00 32.28 2.41
2841 5790 4.698201 TCGATATTTGGGGTCAATGCTA 57.302 40.909 0.00 0.00 32.28 3.49
2897 5847 3.181405 ACAAGGAGGAGGAGAAGGTTAGT 60.181 47.826 0.00 0.00 0.00 2.24
2917 5867 5.175859 GCTGTTTCAATACTACTAGGCACA 58.824 41.667 0.00 0.00 0.00 4.57
2938 5891 1.267121 AACCGAGTACATGAGGTGCT 58.733 50.000 0.00 0.00 45.83 4.40
2965 5920 8.703604 TGAATCGAAAGGATTTAGACTTAGTG 57.296 34.615 0.00 0.00 45.33 2.74
2996 5951 0.108585 ACATGAGGTGCGGTTTCAGT 59.891 50.000 0.00 0.00 0.00 3.41
2997 5952 2.002586 CTACATGAGGTGCGGTTTCAG 58.997 52.381 0.00 0.00 0.00 3.02
2998 5953 1.621317 TCTACATGAGGTGCGGTTTCA 59.379 47.619 0.00 0.00 0.00 2.69
2999 5954 2.271800 CTCTACATGAGGTGCGGTTTC 58.728 52.381 0.00 0.00 39.08 2.78
3000 5955 2.386661 CTCTACATGAGGTGCGGTTT 57.613 50.000 0.00 0.00 39.08 3.27
3029 5984 9.594936 TGGTGATCCTAAAGAAAAATTTCCTAA 57.405 29.630 2.37 0.00 34.76 2.69
3030 5985 9.594936 TTGGTGATCCTAAAGAAAAATTTCCTA 57.405 29.630 2.37 0.00 34.76 2.94
3031 5986 8.491045 TTGGTGATCCTAAAGAAAAATTTCCT 57.509 30.769 2.37 0.00 34.76 3.36
3032 5987 9.208022 CTTTGGTGATCCTAAAGAAAAATTTCC 57.792 33.333 11.89 0.00 35.70 3.13
3033 5988 9.764363 ACTTTGGTGATCCTAAAGAAAAATTTC 57.236 29.630 19.54 0.00 36.40 2.17
3036 5991 9.147732 AGAACTTTGGTGATCCTAAAGAAAAAT 57.852 29.630 19.54 6.78 36.40 1.82
3038 5993 8.533569 AAGAACTTTGGTGATCCTAAAGAAAA 57.466 30.769 19.54 1.00 36.40 2.29
3040 5995 7.940850 CAAAGAACTTTGGTGATCCTAAAGAA 58.059 34.615 19.54 0.00 44.47 2.52
3041 5996 7.510549 CAAAGAACTTTGGTGATCCTAAAGA 57.489 36.000 19.54 0.00 44.47 2.52
3055 6010 7.441836 ACTCTCAAAACCAAACAAAGAACTTT 58.558 30.769 0.00 0.00 0.00 2.66
3057 6012 6.590234 ACTCTCAAAACCAAACAAAGAACT 57.410 33.333 0.00 0.00 0.00 3.01
3058 6013 8.188139 TCATACTCTCAAAACCAAACAAAGAAC 58.812 33.333 0.00 0.00 0.00 3.01
3059 6014 8.287439 TCATACTCTCAAAACCAAACAAAGAA 57.713 30.769 0.00 0.00 0.00 2.52
3062 6017 7.359595 CGATCATACTCTCAAAACCAAACAAA 58.640 34.615 0.00 0.00 0.00 2.83
3063 6018 6.072728 CCGATCATACTCTCAAAACCAAACAA 60.073 38.462 0.00 0.00 0.00 2.83
3064 6019 5.411361 CCGATCATACTCTCAAAACCAAACA 59.589 40.000 0.00 0.00 0.00 2.83
3065 6020 5.411669 ACCGATCATACTCTCAAAACCAAAC 59.588 40.000 0.00 0.00 0.00 2.93
3066 6021 5.556915 ACCGATCATACTCTCAAAACCAAA 58.443 37.500 0.00 0.00 0.00 3.28
3067 6022 5.160607 ACCGATCATACTCTCAAAACCAA 57.839 39.130 0.00 0.00 0.00 3.67
3068 6023 4.819105 ACCGATCATACTCTCAAAACCA 57.181 40.909 0.00 0.00 0.00 3.67
3069 6024 5.175859 TCAACCGATCATACTCTCAAAACC 58.824 41.667 0.00 0.00 0.00 3.27
3071 6026 9.613428 AATAATCAACCGATCATACTCTCAAAA 57.387 29.630 0.00 0.00 0.00 2.44
3072 6027 9.045223 CAATAATCAACCGATCATACTCTCAAA 57.955 33.333 0.00 0.00 0.00 2.69
3074 6029 7.726216 ACAATAATCAACCGATCATACTCTCA 58.274 34.615 0.00 0.00 0.00 3.27
3075 6030 9.692749 TTACAATAATCAACCGATCATACTCTC 57.307 33.333 0.00 0.00 0.00 3.20
3077 6032 8.926710 CCTTACAATAATCAACCGATCATACTC 58.073 37.037 0.00 0.00 0.00 2.59
3078 6033 8.429641 ACCTTACAATAATCAACCGATCATACT 58.570 33.333 0.00 0.00 0.00 2.12
3079 6034 8.603242 ACCTTACAATAATCAACCGATCATAC 57.397 34.615 0.00 0.00 0.00 2.39
3081 6036 7.279615 TGACCTTACAATAATCAACCGATCAT 58.720 34.615 0.00 0.00 0.00 2.45
3082 6037 6.645306 TGACCTTACAATAATCAACCGATCA 58.355 36.000 0.00 0.00 0.00 2.92
3086 6041 5.123186 TGCTTGACCTTACAATAATCAACCG 59.877 40.000 0.00 0.00 0.00 4.44
3087 6042 6.509418 TGCTTGACCTTACAATAATCAACC 57.491 37.500 0.00 0.00 0.00 3.77
3088 6043 8.810652 TTTTGCTTGACCTTACAATAATCAAC 57.189 30.769 0.00 0.00 0.00 3.18
3090 6045 7.090173 GCTTTTGCTTGACCTTACAATAATCA 58.910 34.615 0.00 0.00 43.35 2.57
3091 6046 7.511809 GCTTTTGCTTGACCTTACAATAATC 57.488 36.000 0.00 0.00 43.35 1.75
3110 6065 9.301897 ACATTCTATGTCTTTTCCTTAGCTTTT 57.698 29.630 0.00 0.00 39.92 2.27
3111 6066 8.870075 ACATTCTATGTCTTTTCCTTAGCTTT 57.130 30.769 0.00 0.00 39.92 3.51
3112 6067 8.870075 AACATTCTATGTCTTTTCCTTAGCTT 57.130 30.769 0.00 0.00 44.07 3.74
3114 6069 8.268850 TGAACATTCTATGTCTTTTCCTTAGC 57.731 34.615 0.00 0.00 44.07 3.09
3118 6073 7.944554 TCCTTTGAACATTCTATGTCTTTTCCT 59.055 33.333 0.00 0.00 44.07 3.36
3119 6074 8.110860 TCCTTTGAACATTCTATGTCTTTTCC 57.889 34.615 0.00 0.00 44.07 3.13
3120 6075 9.965824 TTTCCTTTGAACATTCTATGTCTTTTC 57.034 29.630 0.00 0.00 44.07 2.29
3125 6080 8.360390 AGGTTTTTCCTTTGAACATTCTATGTC 58.640 33.333 0.00 0.00 45.67 3.06
3126 6081 8.250143 AGGTTTTTCCTTTGAACATTCTATGT 57.750 30.769 0.00 0.00 45.67 2.29
3143 7617 0.536460 TGGTCGCCTGGAGGTTTTTC 60.536 55.000 0.00 0.00 37.57 2.29
3144 7618 0.112412 ATGGTCGCCTGGAGGTTTTT 59.888 50.000 0.00 0.00 37.57 1.94
3148 7622 1.918293 TGAATGGTCGCCTGGAGGT 60.918 57.895 0.00 0.00 37.57 3.85
3151 7625 0.109532 TTTGTGAATGGTCGCCTGGA 59.890 50.000 0.00 0.00 32.98 3.86
3155 7629 2.480073 CCATGATTTGTGAATGGTCGCC 60.480 50.000 0.00 0.00 36.82 5.54
3159 7633 2.498481 CTGCCCATGATTTGTGAATGGT 59.502 45.455 0.00 0.00 39.43 3.55
3162 7636 1.483415 GCCTGCCCATGATTTGTGAAT 59.517 47.619 0.00 0.00 0.00 2.57
3167 7641 2.702592 ATTTGCCTGCCCATGATTTG 57.297 45.000 0.00 0.00 0.00 2.32
3170 7644 3.853207 AGAATATTTGCCTGCCCATGAT 58.147 40.909 0.00 0.00 0.00 2.45
3171 7645 3.317455 AGAATATTTGCCTGCCCATGA 57.683 42.857 0.00 0.00 0.00 3.07
3172 7646 3.057033 GCTAGAATATTTGCCTGCCCATG 60.057 47.826 0.00 0.00 0.00 3.66
3173 7647 3.160269 GCTAGAATATTTGCCTGCCCAT 58.840 45.455 0.00 0.00 0.00 4.00
3176 7650 3.217626 ACTGCTAGAATATTTGCCTGCC 58.782 45.455 0.00 0.00 0.00 4.85
3177 7651 4.024218 CAGACTGCTAGAATATTTGCCTGC 60.024 45.833 0.00 0.00 0.00 4.85
3178 7652 4.024218 GCAGACTGCTAGAATATTTGCCTG 60.024 45.833 20.41 0.00 40.96 4.85
3179 7653 4.133078 GCAGACTGCTAGAATATTTGCCT 58.867 43.478 20.41 0.00 40.96 4.75
3180 7654 3.879295 TGCAGACTGCTAGAATATTTGCC 59.121 43.478 26.94 0.00 45.31 4.52
3181 7655 4.574013 ACTGCAGACTGCTAGAATATTTGC 59.426 41.667 26.94 0.00 45.31 3.68
3182 7656 5.236047 GGACTGCAGACTGCTAGAATATTTG 59.764 44.000 26.94 7.69 45.31 2.32
3183 7657 5.130145 AGGACTGCAGACTGCTAGAATATTT 59.870 40.000 26.94 6.99 45.31 1.40
3185 7659 4.222336 AGGACTGCAGACTGCTAGAATAT 58.778 43.478 26.94 7.93 45.31 1.28
3186 7660 3.636679 AGGACTGCAGACTGCTAGAATA 58.363 45.455 26.94 5.88 45.31 1.75
3187 7661 2.465813 AGGACTGCAGACTGCTAGAAT 58.534 47.619 26.94 8.85 45.31 2.40
3188 7662 1.930251 AGGACTGCAGACTGCTAGAA 58.070 50.000 26.94 7.00 45.31 2.10
3189 7663 2.808906 TAGGACTGCAGACTGCTAGA 57.191 50.000 26.94 7.37 45.31 2.43
3190 7664 4.399004 AAATAGGACTGCAGACTGCTAG 57.601 45.455 26.94 22.46 45.31 3.42
3192 7666 5.365021 AATAAATAGGACTGCAGACTGCT 57.635 39.130 26.94 12.33 45.31 4.24
3195 7669 8.312669 AGAACTAATAAATAGGACTGCAGACT 57.687 34.615 23.35 19.58 35.81 3.24
3196 7670 8.950208 AAGAACTAATAAATAGGACTGCAGAC 57.050 34.615 23.35 15.15 35.81 3.51
3198 7672 9.383519 TCAAAGAACTAATAAATAGGACTGCAG 57.616 33.333 13.48 13.48 35.81 4.41
3199 7673 9.383519 CTCAAAGAACTAATAAATAGGACTGCA 57.616 33.333 0.00 0.00 35.81 4.41
3200 7674 9.601217 TCTCAAAGAACTAATAAATAGGACTGC 57.399 33.333 0.00 0.00 35.81 4.40
3214 7688 6.366332 GTCGAAAAGCTCATCTCAAAGAACTA 59.634 38.462 0.00 0.00 0.00 2.24
3216 7690 5.378180 GTCGAAAAGCTCATCTCAAAGAAC 58.622 41.667 0.00 0.00 0.00 3.01
3217 7691 4.452455 GGTCGAAAAGCTCATCTCAAAGAA 59.548 41.667 0.00 0.00 0.00 2.52
3218 7692 3.997021 GGTCGAAAAGCTCATCTCAAAGA 59.003 43.478 0.00 0.00 0.00 2.52
3219 7693 3.999663 AGGTCGAAAAGCTCATCTCAAAG 59.000 43.478 0.00 0.00 0.00 2.77
3220 7694 3.748048 CAGGTCGAAAAGCTCATCTCAAA 59.252 43.478 0.00 0.00 31.91 2.69
3223 7697 2.275318 CCAGGTCGAAAAGCTCATCTC 58.725 52.381 0.00 0.00 31.91 2.75
3224 7698 1.677217 GCCAGGTCGAAAAGCTCATCT 60.677 52.381 0.00 0.00 31.91 2.90
3225 7699 0.729690 GCCAGGTCGAAAAGCTCATC 59.270 55.000 0.00 0.00 31.91 2.92
3227 7701 0.036732 ATGCCAGGTCGAAAAGCTCA 59.963 50.000 0.00 0.00 31.91 4.26
3228 7702 1.168714 AATGCCAGGTCGAAAAGCTC 58.831 50.000 0.00 0.00 31.91 4.09
3230 7704 1.269448 TCAAATGCCAGGTCGAAAAGC 59.731 47.619 0.00 0.00 0.00 3.51
3231 7705 3.855689 ATCAAATGCCAGGTCGAAAAG 57.144 42.857 0.00 0.00 0.00 2.27
3232 7706 4.280677 AGAAATCAAATGCCAGGTCGAAAA 59.719 37.500 0.00 0.00 0.00 2.29
3237 7711 3.256558 GCAAGAAATCAAATGCCAGGTC 58.743 45.455 0.00 0.00 32.73 3.85
3242 7716 2.353579 GCCATGCAAGAAATCAAATGCC 59.646 45.455 0.00 0.00 38.00 4.40
3263 8002 8.434733 AGAATCACAATCATCACAGTTATCAG 57.565 34.615 0.00 0.00 0.00 2.90
3289 8028 3.415212 TGCTGGGAGAACATCAAGAAAG 58.585 45.455 0.00 0.00 0.00 2.62
3335 8074 6.180472 AGATCCCAAACGACACAAAGATATT 58.820 36.000 0.00 0.00 0.00 1.28
3337 8076 5.160607 AGATCCCAAACGACACAAAGATA 57.839 39.130 0.00 0.00 0.00 1.98
3343 8082 1.606668 GCAAAGATCCCAAACGACACA 59.393 47.619 0.00 0.00 0.00 3.72
3344 8083 1.068541 GGCAAAGATCCCAAACGACAC 60.069 52.381 0.00 0.00 0.00 3.67
3346 8085 1.243902 TGGCAAAGATCCCAAACGAC 58.756 50.000 0.00 0.00 0.00 4.34
3347 8086 2.214376 ATGGCAAAGATCCCAAACGA 57.786 45.000 0.00 0.00 34.25 3.85
3348 8087 4.448537 TTTATGGCAAAGATCCCAAACG 57.551 40.909 0.00 0.00 34.25 3.60
3350 8089 6.371595 ACATTTTATGGCAAAGATCCCAAA 57.628 33.333 0.00 0.00 34.25 3.28
3372 8111 6.045955 TCAGAAGTAAACCAAAATTGCCAAC 58.954 36.000 0.00 0.00 0.00 3.77
3384 8126 6.809630 ATTCTTCAAGCTCAGAAGTAAACC 57.190 37.500 21.45 0.00 42.35 3.27
3391 8133 6.656270 TGAAAGCATATTCTTCAAGCTCAGAA 59.344 34.615 5.64 5.64 33.83 3.02
3427 8169 7.048512 AGCATAGTGAGGAACATTAAGGTTAC 58.951 38.462 7.14 7.14 31.46 2.50
3443 8185 9.031360 GTTCATTTTCGTATAAGAGCATAGTGA 57.969 33.333 0.00 0.00 0.00 3.41
3444 8186 8.276325 GGTTCATTTTCGTATAAGAGCATAGTG 58.724 37.037 0.00 0.00 0.00 2.74
3458 8200 6.071952 AGCATGAAATACAGGTTCATTTTCGT 60.072 34.615 0.00 0.00 41.82 3.85
3460 8202 7.542025 AGAGCATGAAATACAGGTTCATTTTC 58.458 34.615 0.00 0.00 41.82 2.29
3462 8204 7.472334 AAGAGCATGAAATACAGGTTCATTT 57.528 32.000 0.00 0.00 41.82 2.32
3487 8490 8.127150 CCTTCTGTCAGGGAAAGAAAATTTAT 57.873 34.615 0.00 0.00 35.74 1.40
3501 8504 2.230660 GGTGTTTTCCCTTCTGTCAGG 58.769 52.381 0.00 0.00 0.00 3.86
3530 8533 9.392259 ACCTTGTAATACTTTGGCTTATCTAAC 57.608 33.333 0.00 0.00 0.00 2.34
3539 8542 9.953565 TCCATATATACCTTGTAATACTTTGGC 57.046 33.333 0.00 0.00 0.00 4.52
3550 8553 8.713971 TGACACATTTCTCCATATATACCTTGT 58.286 33.333 0.00 0.00 0.00 3.16
3551 8554 8.993121 GTGACACATTTCTCCATATATACCTTG 58.007 37.037 0.00 0.00 0.00 3.61
3552 8555 8.713971 TGTGACACATTTCTCCATATATACCTT 58.286 33.333 3.56 0.00 0.00 3.50
3553 8556 8.262601 TGTGACACATTTCTCCATATATACCT 57.737 34.615 3.56 0.00 0.00 3.08
3554 8557 8.902540 TTGTGACACATTTCTCCATATATACC 57.097 34.615 9.55 0.00 0.00 2.73
3564 8567 8.562892 CCCATCTATTATTGTGACACATTTCTC 58.437 37.037 9.55 0.00 0.00 2.87
3566 8569 8.225603 ACCCATCTATTATTGTGACACATTTC 57.774 34.615 9.55 0.00 0.00 2.17
3567 8570 9.342308 CTACCCATCTATTATTGTGACACATTT 57.658 33.333 9.55 3.00 0.00 2.32
3570 8671 6.126911 TGCTACCCATCTATTATTGTGACACA 60.127 38.462 3.56 3.56 0.00 3.72
3606 8707 4.891627 TTCATTCTGTGCTTGTTTTCGA 57.108 36.364 0.00 0.00 0.00 3.71
3608 8709 4.746611 CCCTTTCATTCTGTGCTTGTTTTC 59.253 41.667 0.00 0.00 0.00 2.29
3614 8715 3.502211 CGTTACCCTTTCATTCTGTGCTT 59.498 43.478 0.00 0.00 0.00 3.91
3711 8832 2.861935 GTGATGGCAATACAGCATTTGC 59.138 45.455 0.00 0.00 45.82 3.68
3712 8833 3.861113 GTGTGATGGCAATACAGCATTTG 59.139 43.478 7.34 0.00 39.16 2.32
3719 8959 1.750206 GGCATGTGTGATGGCAATACA 59.250 47.619 0.00 0.00 43.15 2.29
3808 9048 6.915544 ACAGAACATGATGCTACAATACTG 57.084 37.500 0.00 0.00 0.00 2.74
3809 9049 7.928307 AAACAGAACATGATGCTACAATACT 57.072 32.000 0.00 0.00 0.00 2.12
4143 9434 5.212194 GCTGAAATGCGACAGAAAAAGTAA 58.788 37.500 0.00 0.00 36.38 2.24
4144 9435 4.320202 GGCTGAAATGCGACAGAAAAAGTA 60.320 41.667 0.00 0.00 36.38 2.24
4145 9436 3.550842 GGCTGAAATGCGACAGAAAAAGT 60.551 43.478 0.00 0.00 36.38 2.66
4146 9437 2.982470 GGCTGAAATGCGACAGAAAAAG 59.018 45.455 0.00 0.00 36.38 2.27
4147 9438 2.360483 TGGCTGAAATGCGACAGAAAAA 59.640 40.909 0.00 0.00 36.38 1.94
4148 9439 1.952990 TGGCTGAAATGCGACAGAAAA 59.047 42.857 0.00 0.00 36.38 2.29
4149 9440 1.266718 GTGGCTGAAATGCGACAGAAA 59.733 47.619 0.00 0.00 40.56 2.52
4306 9597 4.033709 CAAGAGATGAGTAAAGGGAGGGA 58.966 47.826 0.00 0.00 0.00 4.20
4393 9684 7.484641 CGCATAATAAGCAACAAACATAACAGT 59.515 33.333 0.00 0.00 0.00 3.55
4396 9701 7.734538 ACGCATAATAAGCAACAAACATAAC 57.265 32.000 0.00 0.00 0.00 1.89
4466 9771 4.259356 CATGATCACAGAGAAAAGGCTGA 58.741 43.478 0.00 0.00 36.07 4.26
4467 9772 3.181499 GCATGATCACAGAGAAAAGGCTG 60.181 47.826 0.00 0.00 38.10 4.85
4468 9773 3.015327 GCATGATCACAGAGAAAAGGCT 58.985 45.455 0.00 0.00 0.00 4.58
4469 9774 2.751259 TGCATGATCACAGAGAAAAGGC 59.249 45.455 0.00 0.00 0.00 4.35
4470 9775 4.733815 GCATGCATGATCACAGAGAAAAGG 60.734 45.833 30.64 0.00 0.00 3.11
4471 9776 4.096532 AGCATGCATGATCACAGAGAAAAG 59.903 41.667 30.64 0.00 0.00 2.27
4472 9777 4.014406 AGCATGCATGATCACAGAGAAAA 58.986 39.130 30.64 0.00 0.00 2.29
4473 9778 3.617284 AGCATGCATGATCACAGAGAAA 58.383 40.909 30.64 0.00 0.00 2.52
4474 9779 3.277142 AGCATGCATGATCACAGAGAA 57.723 42.857 30.64 0.00 0.00 2.87
4475 9780 3.387050 AGTAGCATGCATGATCACAGAGA 59.613 43.478 30.64 3.81 0.00 3.10
4476 9781 3.495001 CAGTAGCATGCATGATCACAGAG 59.505 47.826 30.64 12.74 0.00 3.35
4477 9782 3.463944 CAGTAGCATGCATGATCACAGA 58.536 45.455 30.64 5.46 0.00 3.41
4789 10094 3.726517 ACGTCAACCGCATGCTGC 61.727 61.111 17.13 3.33 41.42 5.25
4804 10109 0.034896 ACCCCTTAACTGCTGACACG 59.965 55.000 0.00 0.00 0.00 4.49
4831 10136 2.038952 TGCCTGTGTATTCTGCAACTCT 59.961 45.455 0.00 0.00 0.00 3.24
5068 10373 3.056607 CCTTGAGAAATGCCGGTTTCATT 60.057 43.478 17.13 9.58 39.88 2.57
5098 10403 2.317371 TCTGCTCTTTCTCCAGGTCT 57.683 50.000 0.00 0.00 0.00 3.85
5127 10432 2.154462 CGCAAAGATCTTCCAACAGGT 58.846 47.619 8.78 0.00 0.00 4.00
5248 10553 3.058432 CGAGCCATGCTTCTGAAATATGG 60.058 47.826 20.13 20.13 39.88 2.74
5400 10705 8.013378 CCTTTTCGTTACCAGTATGTTTGTTAG 58.987 37.037 0.00 0.00 0.00 2.34
5419 10724 0.951040 AGCTTGCGTCTCCCTTTTCG 60.951 55.000 0.00 0.00 0.00 3.46
5488 10793 0.809385 CGTCTTCAGCTAACCGAGGA 59.191 55.000 0.00 0.00 0.00 3.71
5608 10913 3.947196 TCATTGGTGAATACATGCAGTCC 59.053 43.478 0.00 0.00 0.00 3.85
5750 11055 2.376808 CGAGAGCTGATTTCTGGTGT 57.623 50.000 0.00 0.00 0.00 4.16
5827 11132 1.154016 ATCGTGCAACCGTCGAGAG 60.154 57.895 2.76 0.00 37.04 3.20
5945 11253 1.325943 GTGCAGTAGATCGCTTGAAGC 59.674 52.381 7.20 7.20 38.02 3.86
6097 11405 1.812235 TCTGGTAGTCTAACGACGCA 58.188 50.000 0.00 0.00 44.93 5.24
6197 11505 2.092968 CCTCGGAGATTTCATGGTCCAA 60.093 50.000 6.58 0.00 33.89 3.53
6269 11577 2.480416 CCTCTAACCTCGCTTGCAGTAG 60.480 54.545 0.00 0.00 0.00 2.57
6322 11630 1.280133 CTTCTTGTGCTGATCAGGGGA 59.720 52.381 23.89 0.00 0.00 4.81
6326 11634 4.698780 TCATTTCCTTCTTGTGCTGATCAG 59.301 41.667 18.84 18.84 0.00 2.90
6340 11648 0.112995 TGCCAGCCAGTCATTTCCTT 59.887 50.000 0.00 0.00 0.00 3.36
6343 11651 1.598701 GGGTGCCAGCCAGTCATTTC 61.599 60.000 8.34 0.00 35.40 2.17
6344 11652 1.607467 GGGTGCCAGCCAGTCATTT 60.607 57.895 8.34 0.00 35.40 2.32
6345 11653 2.036256 GGGTGCCAGCCAGTCATT 59.964 61.111 8.34 0.00 35.40 2.57
6390 11707 8.333235 TGTCTTATCTTACAATGTAACCCCATT 58.667 33.333 1.08 0.00 35.45 3.16
6395 11719 9.817809 TCAGATGTCTTATCTTACAATGTAACC 57.182 33.333 1.08 0.00 0.00 2.85
6418 11742 7.895975 TGAAATTCTGAACACATCTAGTCAG 57.104 36.000 0.00 0.46 0.00 3.51
6424 11748 4.673580 GCGCATGAAATTCTGAACACATCT 60.674 41.667 0.30 0.00 0.00 2.90
6433 11757 1.935917 CGCCGCGCATGAAATTCTG 60.936 57.895 8.75 0.00 0.00 3.02
6531 11868 1.240256 ATCATAGCCGGACGAGACTC 58.760 55.000 5.05 0.00 0.00 3.36
6614 11954 8.803397 TCTACATCGGCACATATAATACTACT 57.197 34.615 0.00 0.00 0.00 2.57
6630 11978 5.578005 TCAAGTTCCTACTTCTACATCGG 57.422 43.478 0.00 0.00 42.67 4.18
6649 11997 0.843309 TCTCAAGCACAGGGGTTCAA 59.157 50.000 0.00 0.00 34.30 2.69
6661 12009 4.294232 GGTTTCAAGCTTTCTTCTCAAGC 58.706 43.478 0.00 0.00 46.05 4.01
6662 12010 4.261783 GGGGTTTCAAGCTTTCTTCTCAAG 60.262 45.833 0.00 0.00 0.00 3.02
6663 12011 3.636764 GGGGTTTCAAGCTTTCTTCTCAA 59.363 43.478 0.00 0.00 0.00 3.02
6664 12012 3.117512 AGGGGTTTCAAGCTTTCTTCTCA 60.118 43.478 0.00 0.00 0.00 3.27
6665 12013 3.254411 CAGGGGTTTCAAGCTTTCTTCTC 59.746 47.826 0.00 0.00 0.00 2.87
6667 12015 3.222603 TCAGGGGTTTCAAGCTTTCTTC 58.777 45.455 0.00 0.00 0.00 2.87
6668 12016 3.312736 TCAGGGGTTTCAAGCTTTCTT 57.687 42.857 0.00 0.00 0.00 2.52
6669 12017 3.117512 TCTTCAGGGGTTTCAAGCTTTCT 60.118 43.478 0.00 0.00 0.00 2.52
6670 12018 3.222603 TCTTCAGGGGTTTCAAGCTTTC 58.777 45.455 0.00 0.00 0.00 2.62
6672 12020 3.160269 CATCTTCAGGGGTTTCAAGCTT 58.840 45.455 0.00 0.00 0.00 3.74
6673 12021 2.556114 CCATCTTCAGGGGTTTCAAGCT 60.556 50.000 0.00 0.00 0.00 3.74
6674 12022 1.821136 CCATCTTCAGGGGTTTCAAGC 59.179 52.381 0.00 0.00 0.00 4.01
6675 12023 1.821136 GCCATCTTCAGGGGTTTCAAG 59.179 52.381 0.00 0.00 0.00 3.02
6676 12024 1.428912 AGCCATCTTCAGGGGTTTCAA 59.571 47.619 0.00 0.00 0.00 2.69
6677 12025 1.004745 GAGCCATCTTCAGGGGTTTCA 59.995 52.381 0.00 0.00 34.46 2.69
6678 12026 1.756430 GAGCCATCTTCAGGGGTTTC 58.244 55.000 0.00 0.00 34.46 2.78
6679 12027 0.035056 CGAGCCATCTTCAGGGGTTT 60.035 55.000 0.00 0.00 34.46 3.27
6680 12028 0.909610 TCGAGCCATCTTCAGGGGTT 60.910 55.000 0.00 0.00 34.46 4.11
6681 12029 0.909610 TTCGAGCCATCTTCAGGGGT 60.910 55.000 0.00 0.00 37.66 4.95
6682 12030 0.179062 CTTCGAGCCATCTTCAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
6683 12031 0.826715 TCTTCGAGCCATCTTCAGGG 59.173 55.000 0.00 0.00 0.00 4.45
6684 12032 2.680312 TTCTTCGAGCCATCTTCAGG 57.320 50.000 0.00 0.00 0.00 3.86
6685 12033 2.351111 GCTTTCTTCGAGCCATCTTCAG 59.649 50.000 0.00 0.00 34.06 3.02
6686 12034 2.027745 AGCTTTCTTCGAGCCATCTTCA 60.028 45.455 0.00 0.00 41.03 3.02
6687 12035 2.626840 AGCTTTCTTCGAGCCATCTTC 58.373 47.619 0.00 0.00 41.03 2.87
6688 12036 2.746362 CAAGCTTTCTTCGAGCCATCTT 59.254 45.455 0.00 0.00 41.03 2.40
6689 12037 2.027745 TCAAGCTTTCTTCGAGCCATCT 60.028 45.455 0.00 0.00 41.03 2.90
6690 12038 2.350522 TCAAGCTTTCTTCGAGCCATC 58.649 47.619 0.00 0.00 41.03 3.51
6726 12074 1.885887 TGAAAATTCAAGCAGACGGGG 59.114 47.619 0.00 0.00 33.55 5.73
6752 12100 1.698165 TCAGACGATCGTTGCAAGAC 58.302 50.000 23.63 7.50 0.00 3.01
6778 12126 5.163385 CCACATGCTTTCATTCATGGGTATT 60.163 40.000 7.08 0.00 41.29 1.89
6831 12264 2.223377 GCTCTTTGGTTTGGTCACGTAG 59.777 50.000 0.00 0.00 0.00 3.51
6838 12271 2.551912 CGCGGCTCTTTGGTTTGGT 61.552 57.895 0.00 0.00 0.00 3.67
6948 12401 3.284617 ACAACGCTAAACAACTCCCTTT 58.715 40.909 0.00 0.00 0.00 3.11
6961 12444 1.134818 CAGGCCTGTATGACAACGCTA 60.135 52.381 25.53 0.00 0.00 4.26
6969 12452 1.565759 AGAAATGGCAGGCCTGTATGA 59.434 47.619 32.81 15.18 36.94 2.15
7086 12574 1.818674 CGAGGGGATTTGGGTTTTCTG 59.181 52.381 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.