Multiple sequence alignment - TraesCS7D01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G334000 chr7D 100.000 2945 0 0 1 2945 425732388 425729444 0.000000e+00 5439
1 TraesCS7D01G334000 chr7D 81.399 1215 209 13 1001 2205 544778167 544779374 0.000000e+00 976
2 TraesCS7D01G334000 chr7D 80.486 1276 232 14 1001 2264 544849401 544850671 0.000000e+00 961
3 TraesCS7D01G334000 chr7D 78.965 1198 232 14 1001 2189 486241579 486240393 0.000000e+00 798
4 TraesCS7D01G334000 chr7D 76.125 1244 254 31 999 2213 511220816 511219587 1.940000e-171 612
5 TraesCS7D01G334000 chr7D 93.827 162 8 2 260 420 484440519 484440359 2.930000e-60 243
6 TraesCS7D01G334000 chr7D 91.813 171 12 2 260 429 376443379 376443548 1.360000e-58 237
7 TraesCS7D01G334000 chr7D 83.142 261 34 10 3 255 91748690 91748432 2.280000e-56 230
8 TraesCS7D01G334000 chr7D 83.665 251 30 9 3 243 483287081 483287330 2.950000e-55 226
9 TraesCS7D01G334000 chr7D 94.776 134 7 0 289 422 484439313 484439180 2.970000e-50 209
10 TraesCS7D01G334000 chr7B 94.226 2234 83 14 421 2648 443328093 443325900 0.000000e+00 3369
11 TraesCS7D01G334000 chr7B 80.890 1214 217 11 1001 2205 588084300 588085507 0.000000e+00 942
12 TraesCS7D01G334000 chr7B 80.741 1215 217 13 1001 2205 588239497 588240704 0.000000e+00 931
13 TraesCS7D01G334000 chr7B 80.706 1218 212 18 1001 2205 588252848 588254055 0.000000e+00 926
14 TraesCS7D01G334000 chr7B 79.177 1215 231 18 1001 2205 514062884 514061682 0.000000e+00 822
15 TraesCS7D01G334000 chr7B 93.793 290 4 2 2644 2933 443313935 443313660 9.760000e-115 424
16 TraesCS7D01G334000 chr7B 83.243 185 27 4 2433 2616 741344670 741344851 1.820000e-37 167
17 TraesCS7D01G334000 chr7B 93.204 103 7 0 318 420 153273024 153272922 5.080000e-33 152
18 TraesCS7D01G334000 chr7A 90.977 1873 146 10 443 2295 507430455 507432324 0.000000e+00 2501
19 TraesCS7D01G334000 chr7A 80.000 800 150 7 1397 2189 626572331 626573127 1.520000e-162 582
20 TraesCS7D01G334000 chr7A 80.000 800 150 7 1397 2189 626603285 626604081 1.520000e-162 582
21 TraesCS7D01G334000 chr7A 83.333 264 35 9 1 255 83621460 83621197 4.910000e-58 235
22 TraesCS7D01G334000 chr2D 93.605 172 11 0 252 423 322132289 322132118 1.050000e-64 257
23 TraesCS7D01G334000 chr2D 92.771 166 10 2 260 424 9766067 9766231 3.790000e-59 239
24 TraesCS7D01G334000 chr2D 91.925 161 12 1 269 429 234362496 234362337 1.060000e-54 224
25 TraesCS7D01G334000 chr2D 87.429 175 19 3 2440 2612 9256454 9256627 6.440000e-47 198
26 TraesCS7D01G334000 chr4D 94.479 163 7 2 260 421 3414504 3414343 1.750000e-62 250
27 TraesCS7D01G334000 chr4D 92.899 169 9 3 260 426 478261482 478261315 2.930000e-60 243
28 TraesCS7D01G334000 chr4D 81.061 264 41 7 1 255 348579567 348579304 4.980000e-48 202
29 TraesCS7D01G334000 chr5A 84.556 259 30 8 1 250 482628299 482628556 6.300000e-62 248
30 TraesCS7D01G334000 chr5A 83.799 179 26 3 2440 2616 476636835 476637012 1.820000e-37 167
31 TraesCS7D01G334000 chr6D 94.872 156 7 1 269 424 289220827 289220981 2.930000e-60 243
32 TraesCS7D01G334000 chr6D 81.868 182 25 6 2440 2616 291379859 291380037 2.370000e-31 147
33 TraesCS7D01G334000 chr4B 83.333 264 34 9 1 255 428897674 428897412 4.910000e-58 235
34 TraesCS7D01G334000 chr3D 92.073 164 11 2 260 422 431838320 431838482 2.280000e-56 230
35 TraesCS7D01G334000 chr3D 81.679 262 36 11 4 255 340702492 340702233 1.070000e-49 207
36 TraesCS7D01G334000 chr3D 86.145 166 21 2 2451 2615 559269913 559269749 8.390000e-41 178
37 TraesCS7D01G334000 chr1D 82.955 264 34 10 2 255 246074978 246075240 8.210000e-56 228
38 TraesCS7D01G334000 chr1A 82.642 265 35 8 1 255 533251709 533251972 1.060000e-54 224
39 TraesCS7D01G334000 chr5D 83.721 172 19 8 2449 2615 559479953 559480120 1.410000e-33 154
40 TraesCS7D01G334000 chr4A 81.915 188 26 7 2434 2616 716463621 716463437 5.080000e-33 152
41 TraesCS7D01G334000 chr2B 81.667 180 25 7 2440 2615 490994985 490994810 3.060000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G334000 chr7D 425729444 425732388 2944 True 5439 5439 100.0000 1 2945 1 chr7D.!!$R2 2944
1 TraesCS7D01G334000 chr7D 544778167 544779374 1207 False 976 976 81.3990 1001 2205 1 chr7D.!!$F3 1204
2 TraesCS7D01G334000 chr7D 544849401 544850671 1270 False 961 961 80.4860 1001 2264 1 chr7D.!!$F4 1263
3 TraesCS7D01G334000 chr7D 486240393 486241579 1186 True 798 798 78.9650 1001 2189 1 chr7D.!!$R3 1188
4 TraesCS7D01G334000 chr7D 511219587 511220816 1229 True 612 612 76.1250 999 2213 1 chr7D.!!$R4 1214
5 TraesCS7D01G334000 chr7D 484439180 484440519 1339 True 226 243 94.3015 260 422 2 chr7D.!!$R5 162
6 TraesCS7D01G334000 chr7B 443325900 443328093 2193 True 3369 3369 94.2260 421 2648 1 chr7B.!!$R3 2227
7 TraesCS7D01G334000 chr7B 588084300 588085507 1207 False 942 942 80.8900 1001 2205 1 chr7B.!!$F1 1204
8 TraesCS7D01G334000 chr7B 588239497 588240704 1207 False 931 931 80.7410 1001 2205 1 chr7B.!!$F2 1204
9 TraesCS7D01G334000 chr7B 588252848 588254055 1207 False 926 926 80.7060 1001 2205 1 chr7B.!!$F3 1204
10 TraesCS7D01G334000 chr7B 514061682 514062884 1202 True 822 822 79.1770 1001 2205 1 chr7B.!!$R4 1204
11 TraesCS7D01G334000 chr7A 507430455 507432324 1869 False 2501 2501 90.9770 443 2295 1 chr7A.!!$F1 1852
12 TraesCS7D01G334000 chr7A 626572331 626573127 796 False 582 582 80.0000 1397 2189 1 chr7A.!!$F2 792
13 TraesCS7D01G334000 chr7A 626603285 626604081 796 False 582 582 80.0000 1397 2189 1 chr7A.!!$F3 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 1836 0.178831 ACCACCTCCCAATCCTTCCT 60.179 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2524 3742 2.222007 GTGCAAAACACTGCCATTGA 57.778 45.0 0.0 0.0 46.41 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 7.698836 AAAAGATTGACACAGCAACATAAAC 57.301 32.000 0.00 0.00 0.00 2.01
66 67 6.639632 AAGATTGACACAGCAACATAAACT 57.360 33.333 0.00 0.00 0.00 2.66
67 68 6.246420 AGATTGACACAGCAACATAAACTC 57.754 37.500 0.00 0.00 0.00 3.01
68 69 5.764686 AGATTGACACAGCAACATAAACTCA 59.235 36.000 0.00 0.00 0.00 3.41
69 70 6.432162 AGATTGACACAGCAACATAAACTCAT 59.568 34.615 0.00 0.00 0.00 2.90
70 71 5.611796 TGACACAGCAACATAAACTCATC 57.388 39.130 0.00 0.00 0.00 2.92
71 72 5.062528 TGACACAGCAACATAAACTCATCA 58.937 37.500 0.00 0.00 0.00 3.07
72 73 5.179929 TGACACAGCAACATAAACTCATCAG 59.820 40.000 0.00 0.00 0.00 2.90
73 74 5.308014 ACACAGCAACATAAACTCATCAGA 58.692 37.500 0.00 0.00 0.00 3.27
74 75 5.942236 ACACAGCAACATAAACTCATCAGAT 59.058 36.000 0.00 0.00 0.00 2.90
75 76 6.093219 ACACAGCAACATAAACTCATCAGATC 59.907 38.462 0.00 0.00 0.00 2.75
76 77 5.587844 ACAGCAACATAAACTCATCAGATCC 59.412 40.000 0.00 0.00 0.00 3.36
77 78 5.587443 CAGCAACATAAACTCATCAGATCCA 59.413 40.000 0.00 0.00 0.00 3.41
78 79 6.094464 CAGCAACATAAACTCATCAGATCCAA 59.906 38.462 0.00 0.00 0.00 3.53
79 80 6.660521 AGCAACATAAACTCATCAGATCCAAA 59.339 34.615 0.00 0.00 0.00 3.28
80 81 7.341256 AGCAACATAAACTCATCAGATCCAAAT 59.659 33.333 0.00 0.00 0.00 2.32
81 82 8.623903 GCAACATAAACTCATCAGATCCAAATA 58.376 33.333 0.00 0.00 0.00 1.40
89 90 9.863650 AACTCATCAGATCCAAATAATCAATCT 57.136 29.630 0.00 0.00 0.00 2.40
90 91 9.286170 ACTCATCAGATCCAAATAATCAATCTG 57.714 33.333 4.65 4.65 42.93 2.90
91 92 8.107399 TCATCAGATCCAAATAATCAATCTGC 57.893 34.615 5.92 0.00 41.87 4.26
92 93 6.549912 TCAGATCCAAATAATCAATCTGCG 57.450 37.500 5.92 0.00 41.87 5.18
93 94 6.290605 TCAGATCCAAATAATCAATCTGCGA 58.709 36.000 5.92 0.00 41.87 5.10
94 95 6.426025 TCAGATCCAAATAATCAATCTGCGAG 59.574 38.462 5.92 0.00 41.87 5.03
95 96 5.704515 AGATCCAAATAATCAATCTGCGAGG 59.295 40.000 0.00 0.00 0.00 4.63
96 97 5.034852 TCCAAATAATCAATCTGCGAGGA 57.965 39.130 0.00 0.00 0.00 3.71
97 98 4.816385 TCCAAATAATCAATCTGCGAGGAC 59.184 41.667 0.00 0.00 0.00 3.85
98 99 4.576053 CCAAATAATCAATCTGCGAGGACA 59.424 41.667 0.00 0.00 0.00 4.02
99 100 5.240183 CCAAATAATCAATCTGCGAGGACAT 59.760 40.000 0.00 0.00 0.00 3.06
100 101 6.427853 CCAAATAATCAATCTGCGAGGACATA 59.572 38.462 0.00 0.00 0.00 2.29
101 102 7.041167 CCAAATAATCAATCTGCGAGGACATAA 60.041 37.037 0.00 0.00 0.00 1.90
102 103 8.344831 CAAATAATCAATCTGCGAGGACATAAA 58.655 33.333 0.00 0.00 0.00 1.40
103 104 8.450578 AATAATCAATCTGCGAGGACATAAAA 57.549 30.769 0.00 0.00 0.00 1.52
104 105 5.741388 ATCAATCTGCGAGGACATAAAAC 57.259 39.130 0.00 0.00 0.00 2.43
105 106 4.832248 TCAATCTGCGAGGACATAAAACT 58.168 39.130 0.00 0.00 0.00 2.66
106 107 4.870426 TCAATCTGCGAGGACATAAAACTC 59.130 41.667 0.00 0.00 0.00 3.01
107 108 4.744795 ATCTGCGAGGACATAAAACTCT 57.255 40.909 0.00 0.00 0.00 3.24
108 109 4.537135 TCTGCGAGGACATAAAACTCTT 57.463 40.909 0.00 0.00 0.00 2.85
109 110 4.894784 TCTGCGAGGACATAAAACTCTTT 58.105 39.130 0.00 0.00 0.00 2.52
110 111 6.032956 TCTGCGAGGACATAAAACTCTTTA 57.967 37.500 0.00 0.00 0.00 1.85
111 112 6.460781 TCTGCGAGGACATAAAACTCTTTAA 58.539 36.000 0.00 0.00 30.87 1.52
112 113 6.367969 TCTGCGAGGACATAAAACTCTTTAAC 59.632 38.462 0.00 0.00 30.87 2.01
113 114 5.410439 TGCGAGGACATAAAACTCTTTAACC 59.590 40.000 0.00 0.00 30.87 2.85
114 115 5.642491 GCGAGGACATAAAACTCTTTAACCT 59.358 40.000 0.00 0.00 34.65 3.50
115 116 6.183360 GCGAGGACATAAAACTCTTTAACCTC 60.183 42.308 0.00 0.00 39.40 3.85
116 117 6.872020 CGAGGACATAAAACTCTTTAACCTCA 59.128 38.462 0.00 0.00 40.74 3.86
117 118 7.549488 CGAGGACATAAAACTCTTTAACCTCAT 59.451 37.037 0.00 1.36 40.74 2.90
118 119 8.567285 AGGACATAAAACTCTTTAACCTCATG 57.433 34.615 0.00 0.00 30.42 3.07
119 120 8.383175 AGGACATAAAACTCTTTAACCTCATGA 58.617 33.333 0.00 0.00 30.42 3.07
120 121 8.669243 GGACATAAAACTCTTTAACCTCATGAG 58.331 37.037 16.24 16.24 30.87 2.90
121 122 9.436957 GACATAAAACTCTTTAACCTCATGAGA 57.563 33.333 24.62 0.81 30.87 3.27
122 123 9.220767 ACATAAAACTCTTTAACCTCATGAGAC 57.779 33.333 24.62 0.00 30.87 3.36
123 124 8.669243 CATAAAACTCTTTAACCTCATGAGACC 58.331 37.037 24.62 0.00 30.87 3.85
124 125 4.457834 ACTCTTTAACCTCATGAGACCG 57.542 45.455 24.62 10.00 0.00 4.79
125 126 3.833070 ACTCTTTAACCTCATGAGACCGT 59.167 43.478 24.62 10.68 0.00 4.83
126 127 4.082136 ACTCTTTAACCTCATGAGACCGTC 60.082 45.833 24.62 0.00 0.00 4.79
127 128 2.933495 TTAACCTCATGAGACCGTCG 57.067 50.000 24.62 8.51 0.00 5.12
128 129 1.100510 TAACCTCATGAGACCGTCGG 58.899 55.000 24.62 10.48 0.00 4.79
129 130 0.611062 AACCTCATGAGACCGTCGGA 60.611 55.000 24.62 0.00 0.00 4.55
130 131 0.611062 ACCTCATGAGACCGTCGGAA 60.611 55.000 24.62 0.38 0.00 4.30
131 132 0.530744 CCTCATGAGACCGTCGGAAA 59.469 55.000 24.62 0.00 0.00 3.13
132 133 1.067142 CCTCATGAGACCGTCGGAAAA 60.067 52.381 24.62 0.37 0.00 2.29
133 134 2.611971 CCTCATGAGACCGTCGGAAAAA 60.612 50.000 24.62 0.77 0.00 1.94
134 135 3.262420 CTCATGAGACCGTCGGAAAAAT 58.738 45.455 20.51 3.37 0.00 1.82
135 136 4.430007 CTCATGAGACCGTCGGAAAAATA 58.570 43.478 20.51 0.00 0.00 1.40
136 137 4.823157 TCATGAGACCGTCGGAAAAATAA 58.177 39.130 20.51 0.00 0.00 1.40
137 138 4.868171 TCATGAGACCGTCGGAAAAATAAG 59.132 41.667 20.51 0.78 0.00 1.73
138 139 3.592059 TGAGACCGTCGGAAAAATAAGG 58.408 45.455 20.51 0.00 0.00 2.69
139 140 3.258872 TGAGACCGTCGGAAAAATAAGGA 59.741 43.478 20.51 0.00 0.00 3.36
140 141 4.248058 GAGACCGTCGGAAAAATAAGGAA 58.752 43.478 20.51 0.00 0.00 3.36
141 142 4.644498 AGACCGTCGGAAAAATAAGGAAA 58.356 39.130 20.51 0.00 0.00 3.13
142 143 5.065235 AGACCGTCGGAAAAATAAGGAAAA 58.935 37.500 20.51 0.00 0.00 2.29
143 144 5.708697 AGACCGTCGGAAAAATAAGGAAAAT 59.291 36.000 20.51 0.00 0.00 1.82
144 145 6.208007 AGACCGTCGGAAAAATAAGGAAAATT 59.792 34.615 20.51 0.00 0.00 1.82
145 146 6.751157 ACCGTCGGAAAAATAAGGAAAATTT 58.249 32.000 20.51 0.00 0.00 1.82
146 147 7.884257 ACCGTCGGAAAAATAAGGAAAATTTA 58.116 30.769 20.51 0.00 0.00 1.40
147 148 8.525316 ACCGTCGGAAAAATAAGGAAAATTTAT 58.475 29.630 20.51 0.00 0.00 1.40
148 149 9.361315 CCGTCGGAAAAATAAGGAAAATTTATT 57.639 29.630 4.91 0.00 33.37 1.40
176 177 9.516314 TCACAAAACTATTATGATCACTAGACG 57.484 33.333 0.00 0.00 0.00 4.18
177 178 9.302345 CACAAAACTATTATGATCACTAGACGT 57.698 33.333 0.00 0.00 0.00 4.34
178 179 9.871238 ACAAAACTATTATGATCACTAGACGTT 57.129 29.630 0.00 0.00 0.00 3.99
181 182 9.517609 AAACTATTATGATCACTAGACGTTGAC 57.482 33.333 0.00 0.00 0.00 3.18
182 183 8.221965 ACTATTATGATCACTAGACGTTGACA 57.778 34.615 0.00 0.00 0.00 3.58
183 184 8.683615 ACTATTATGATCACTAGACGTTGACAA 58.316 33.333 0.00 0.00 0.00 3.18
184 185 9.516314 CTATTATGATCACTAGACGTTGACAAA 57.484 33.333 0.00 0.00 0.00 2.83
185 186 7.812309 TTATGATCACTAGACGTTGACAAAG 57.188 36.000 0.00 0.00 0.00 2.77
186 187 5.447624 TGATCACTAGACGTTGACAAAGA 57.552 39.130 8.17 0.00 0.00 2.52
187 188 5.838529 TGATCACTAGACGTTGACAAAGAA 58.161 37.500 8.17 0.00 0.00 2.52
188 189 6.277605 TGATCACTAGACGTTGACAAAGAAA 58.722 36.000 8.17 0.00 0.00 2.52
189 190 6.759356 TGATCACTAGACGTTGACAAAGAAAA 59.241 34.615 8.17 0.00 0.00 2.29
190 191 6.583912 TCACTAGACGTTGACAAAGAAAAG 57.416 37.500 8.17 4.46 0.00 2.27
191 192 6.103997 TCACTAGACGTTGACAAAGAAAAGT 58.896 36.000 8.17 5.01 0.00 2.66
192 193 6.255020 TCACTAGACGTTGACAAAGAAAAGTC 59.745 38.462 8.17 3.32 35.74 3.01
193 194 6.255887 CACTAGACGTTGACAAAGAAAAGTCT 59.744 38.462 8.17 9.56 44.03 3.24
194 195 6.817140 ACTAGACGTTGACAAAGAAAAGTCTT 59.183 34.615 8.17 0.00 46.47 3.01
195 196 7.977853 ACTAGACGTTGACAAAGAAAAGTCTTA 59.022 33.333 8.17 0.00 43.59 2.10
196 197 7.605410 AGACGTTGACAAAGAAAAGTCTTAA 57.395 32.000 8.17 0.00 43.59 1.85
197 198 8.209917 AGACGTTGACAAAGAAAAGTCTTAAT 57.790 30.769 8.17 0.00 43.59 1.40
198 199 8.122952 AGACGTTGACAAAGAAAAGTCTTAATG 58.877 33.333 8.17 0.00 43.59 1.90
199 200 7.981142 ACGTTGACAAAGAAAAGTCTTAATGA 58.019 30.769 8.17 0.00 43.59 2.57
200 201 8.621286 ACGTTGACAAAGAAAAGTCTTAATGAT 58.379 29.630 8.17 0.00 43.59 2.45
201 202 9.107367 CGTTGACAAAGAAAAGTCTTAATGATC 57.893 33.333 0.00 0.00 43.59 2.92
202 203 9.399403 GTTGACAAAGAAAAGTCTTAATGATCC 57.601 33.333 0.00 0.00 43.59 3.36
203 204 7.806690 TGACAAAGAAAAGTCTTAATGATCCG 58.193 34.615 0.00 0.00 43.59 4.18
204 205 7.659799 TGACAAAGAAAAGTCTTAATGATCCGA 59.340 33.333 0.00 0.00 43.59 4.55
205 206 8.034058 ACAAAGAAAAGTCTTAATGATCCGAG 57.966 34.615 0.00 0.00 43.59 4.63
206 207 7.119846 ACAAAGAAAAGTCTTAATGATCCGAGG 59.880 37.037 0.00 0.00 43.59 4.63
207 208 6.301169 AGAAAAGTCTTAATGATCCGAGGT 57.699 37.500 0.00 0.00 0.00 3.85
208 209 6.342111 AGAAAAGTCTTAATGATCCGAGGTC 58.658 40.000 0.00 0.00 0.00 3.85
209 210 4.674281 AAGTCTTAATGATCCGAGGTCC 57.326 45.455 0.00 0.00 0.00 4.46
210 211 2.966516 AGTCTTAATGATCCGAGGTCCC 59.033 50.000 0.00 0.00 0.00 4.46
211 212 2.037381 GTCTTAATGATCCGAGGTCCCC 59.963 54.545 0.00 0.00 0.00 4.81
212 213 1.000955 CTTAATGATCCGAGGTCCCCG 59.999 57.143 0.00 0.00 0.00 5.73
213 214 1.469335 TAATGATCCGAGGTCCCCGC 61.469 60.000 0.00 0.00 0.00 6.13
230 231 3.984292 GCCTCTCAGCGTCAAAATG 57.016 52.632 0.00 0.00 0.00 2.32
231 232 1.442769 GCCTCTCAGCGTCAAAATGA 58.557 50.000 0.00 0.00 0.00 2.57
232 233 1.129437 GCCTCTCAGCGTCAAAATGAC 59.871 52.381 0.39 0.39 43.65 3.06
242 243 1.200948 GTCAAAATGACAGCTGGAGGC 59.799 52.381 19.93 4.95 46.22 4.70
243 244 4.323515 GTCAAAATGACAGCTGGAGGCG 62.324 54.545 19.93 0.00 46.22 5.52
251 252 4.219999 GCTGGAGGCGAGAGGAGC 62.220 72.222 0.00 0.00 0.00 4.70
252 253 2.441901 CTGGAGGCGAGAGGAGCT 60.442 66.667 0.00 0.00 34.52 4.09
253 254 1.152860 CTGGAGGCGAGAGGAGCTA 60.153 63.158 0.00 0.00 34.52 3.32
254 255 0.753479 CTGGAGGCGAGAGGAGCTAA 60.753 60.000 0.00 0.00 34.52 3.09
255 256 0.753479 TGGAGGCGAGAGGAGCTAAG 60.753 60.000 0.00 0.00 34.52 2.18
256 257 0.466555 GGAGGCGAGAGGAGCTAAGA 60.467 60.000 0.00 0.00 34.52 2.10
257 258 0.951558 GAGGCGAGAGGAGCTAAGAG 59.048 60.000 0.00 0.00 34.52 2.85
258 259 1.106944 AGGCGAGAGGAGCTAAGAGC 61.107 60.000 0.00 0.00 42.84 4.09
259 260 1.388065 GGCGAGAGGAGCTAAGAGCA 61.388 60.000 0.64 0.00 45.56 4.26
260 261 0.673437 GCGAGAGGAGCTAAGAGCAT 59.327 55.000 0.64 0.00 45.56 3.79
261 262 1.883275 GCGAGAGGAGCTAAGAGCATA 59.117 52.381 0.64 0.00 45.56 3.14
262 263 2.294791 GCGAGAGGAGCTAAGAGCATAA 59.705 50.000 0.64 0.00 45.56 1.90
263 264 3.056891 GCGAGAGGAGCTAAGAGCATAAT 60.057 47.826 0.64 0.00 45.56 1.28
264 265 4.560513 GCGAGAGGAGCTAAGAGCATAATT 60.561 45.833 0.64 0.00 45.56 1.40
265 266 4.922692 CGAGAGGAGCTAAGAGCATAATTG 59.077 45.833 0.64 0.00 45.56 2.32
266 267 5.226194 AGAGGAGCTAAGAGCATAATTGG 57.774 43.478 0.64 0.00 45.56 3.16
267 268 4.657969 AGAGGAGCTAAGAGCATAATTGGT 59.342 41.667 0.64 0.00 45.56 3.67
268 269 5.131809 AGAGGAGCTAAGAGCATAATTGGTT 59.868 40.000 0.64 0.00 45.56 3.67
269 270 5.760131 AGGAGCTAAGAGCATAATTGGTTT 58.240 37.500 0.64 0.00 45.56 3.27
270 271 5.591877 AGGAGCTAAGAGCATAATTGGTTTG 59.408 40.000 0.64 0.00 45.56 2.93
271 272 5.254339 AGCTAAGAGCATAATTGGTTTGC 57.746 39.130 0.64 0.00 45.56 3.68
299 300 4.335400 AAATTGGCAACTACTTGGTTGG 57.665 40.909 0.00 0.00 44.55 3.77
422 1600 5.323371 GGCAACAAACCAATTATGCTCTA 57.677 39.130 0.00 0.00 34.88 2.43
423 1601 5.719173 GGCAACAAACCAATTATGCTCTAA 58.281 37.500 0.00 0.00 34.88 2.10
424 1602 6.162777 GGCAACAAACCAATTATGCTCTAAA 58.837 36.000 0.00 0.00 34.88 1.85
425 1603 6.818142 GGCAACAAACCAATTATGCTCTAAAT 59.182 34.615 0.00 0.00 34.88 1.40
466 1646 1.600916 GGCGCAAGAAACCCTCACT 60.601 57.895 10.83 0.00 43.02 3.41
646 1836 0.178831 ACCACCTCCCAATCCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
667 1857 0.395173 AGTCTCTCCGGCTCTCCTTC 60.395 60.000 0.00 0.00 0.00 3.46
668 1858 1.076632 TCTCTCCGGCTCTCCTTCC 60.077 63.158 0.00 0.00 0.00 3.46
669 1859 2.042843 TCTCCGGCTCTCCTTCCC 60.043 66.667 0.00 0.00 0.00 3.97
670 1860 2.042435 CTCCGGCTCTCCTTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
671 1861 1.687493 CTCCGGCTCTCCTTCCCTT 60.687 63.158 0.00 0.00 0.00 3.95
672 1862 1.681486 CTCCGGCTCTCCTTCCCTTC 61.681 65.000 0.00 0.00 0.00 3.46
882 2082 3.292159 ACGCTTTGGCCCGGTTTC 61.292 61.111 0.00 0.00 34.44 2.78
951 2151 3.408634 CGGTACAAATCAGAACCTTGGT 58.591 45.455 0.00 0.00 0.00 3.67
967 2167 2.278013 GTCGTCGACTGGGCGATC 60.278 66.667 18.09 0.00 42.82 3.69
968 2168 3.872728 TCGTCGACTGGGCGATCG 61.873 66.667 14.70 11.69 42.82 3.69
1083 2283 2.134287 GCTGGAGTGCCCGGATCTA 61.134 63.158 0.73 0.00 44.44 1.98
1118 2318 3.667282 CTGCACAGCCTGGCACAC 61.667 66.667 22.65 7.74 35.86 3.82
1227 2430 2.704572 GCTCTTGGCATGTACAGTCTT 58.295 47.619 0.33 0.00 41.35 3.01
1230 2433 4.318332 CTCTTGGCATGTACAGTCTTTCA 58.682 43.478 0.33 0.00 0.00 2.69
1251 2454 1.138266 GAGCGAAAGGCCTACACCATA 59.862 52.381 5.16 0.00 45.17 2.74
1255 2458 1.844497 GAAAGGCCTACACCATACCCT 59.156 52.381 5.16 0.00 0.00 4.34
1257 2460 2.881266 AGGCCTACACCATACCCTTA 57.119 50.000 1.29 0.00 0.00 2.69
1348 2551 2.806856 CTGACGCTGCTCAATCCGC 61.807 63.158 0.00 0.00 0.00 5.54
1682 2888 4.014406 GCAGATTGCATATCCCATGATGA 58.986 43.478 0.00 0.00 44.26 2.92
1741 2947 9.703892 TTGATGTGTTTAATTTAAATGGACCAG 57.296 29.630 0.39 0.00 0.00 4.00
1887 3099 3.380320 CAGGTGGTGAGACGTATATCACA 59.620 47.826 22.24 10.93 46.87 3.58
2189 3405 0.820871 TGACACCCAACCTTGCAAAC 59.179 50.000 0.00 0.00 0.00 2.93
2258 3476 7.665559 TGCTACTTCTTGTGTATTCCATTTTCT 59.334 33.333 0.00 0.00 0.00 2.52
2524 3742 6.815142 GTCTGACCTTAATTGGTTATACGTGT 59.185 38.462 0.00 0.00 41.00 4.49
2648 3866 1.770061 TGGGTCGGGTATAACAATCCC 59.230 52.381 6.48 6.48 37.98 3.85
2649 3867 1.770061 GGGTCGGGTATAACAATCCCA 59.230 52.381 8.05 0.00 41.12 4.37
2650 3868 2.374170 GGGTCGGGTATAACAATCCCAT 59.626 50.000 8.05 0.00 41.12 4.00
2651 3869 3.583966 GGGTCGGGTATAACAATCCCATA 59.416 47.826 8.05 0.00 41.12 2.74
2652 3870 4.564199 GGGTCGGGTATAACAATCCCATAC 60.564 50.000 8.05 0.00 41.12 2.39
2653 3871 4.564199 GGTCGGGTATAACAATCCCATACC 60.564 50.000 0.00 0.00 42.29 2.73
2659 3877 6.420638 GGTATAACAATCCCATACCCATACC 58.579 44.000 0.00 0.00 38.74 2.73
2660 3878 6.216868 GGTATAACAATCCCATACCCATACCT 59.783 42.308 0.00 0.00 38.74 3.08
2661 3879 4.453480 AACAATCCCATACCCATACCTG 57.547 45.455 0.00 0.00 0.00 4.00
2662 3880 3.675613 ACAATCCCATACCCATACCTGA 58.324 45.455 0.00 0.00 0.00 3.86
2663 3881 3.394606 ACAATCCCATACCCATACCTGAC 59.605 47.826 0.00 0.00 0.00 3.51
2664 3882 2.879208 TCCCATACCCATACCTGACA 57.121 50.000 0.00 0.00 0.00 3.58
2665 3883 3.360740 TCCCATACCCATACCTGACAT 57.639 47.619 0.00 0.00 0.00 3.06
2666 3884 2.978978 TCCCATACCCATACCTGACATG 59.021 50.000 0.00 0.00 0.00 3.21
2667 3885 2.553028 CCCATACCCATACCTGACATGC 60.553 54.545 0.00 0.00 0.00 4.06
2668 3886 2.373169 CCATACCCATACCTGACATGCT 59.627 50.000 0.00 0.00 0.00 3.79
2669 3887 3.557898 CCATACCCATACCTGACATGCTC 60.558 52.174 0.00 0.00 0.00 4.26
2670 3888 1.583556 ACCCATACCTGACATGCTCA 58.416 50.000 0.00 0.00 0.00 4.26
2671 3889 2.130193 ACCCATACCTGACATGCTCAT 58.870 47.619 0.00 0.00 0.00 2.90
2672 3890 2.158711 ACCCATACCTGACATGCTCATG 60.159 50.000 8.21 8.21 44.15 3.07
2684 3902 3.897325 CATGCTCATGTGTGCCAATATC 58.103 45.455 4.80 0.00 34.23 1.63
2685 3903 2.300433 TGCTCATGTGTGCCAATATCC 58.700 47.619 4.80 0.00 33.96 2.59
2686 3904 2.300433 GCTCATGTGTGCCAATATCCA 58.700 47.619 0.00 0.00 0.00 3.41
2687 3905 2.033801 GCTCATGTGTGCCAATATCCAC 59.966 50.000 0.00 0.00 0.00 4.02
2688 3906 2.620115 CTCATGTGTGCCAATATCCACC 59.380 50.000 0.00 0.00 0.00 4.61
2689 3907 1.682854 CATGTGTGCCAATATCCACCC 59.317 52.381 0.00 0.00 0.00 4.61
2690 3908 0.701147 TGTGTGCCAATATCCACCCA 59.299 50.000 0.00 0.00 0.00 4.51
2691 3909 1.287442 TGTGTGCCAATATCCACCCAT 59.713 47.619 0.00 0.00 0.00 4.00
2692 3910 2.511637 TGTGTGCCAATATCCACCCATA 59.488 45.455 0.00 0.00 0.00 2.74
2693 3911 2.884639 GTGTGCCAATATCCACCCATAC 59.115 50.000 0.00 0.00 0.00 2.39
2694 3912 2.158534 TGTGCCAATATCCACCCATACC 60.159 50.000 0.00 0.00 0.00 2.73
2695 3913 1.427368 TGCCAATATCCACCCATACCC 59.573 52.381 0.00 0.00 0.00 3.69
2696 3914 1.427368 GCCAATATCCACCCATACCCA 59.573 52.381 0.00 0.00 0.00 4.51
2697 3915 2.042979 GCCAATATCCACCCATACCCAT 59.957 50.000 0.00 0.00 0.00 4.00
2698 3916 3.700538 CCAATATCCACCCATACCCATG 58.299 50.000 0.00 0.00 0.00 3.66
2699 3917 3.091545 CAATATCCACCCATACCCATGC 58.908 50.000 0.00 0.00 0.00 4.06
2700 3918 1.072266 TATCCACCCATACCCATGCC 58.928 55.000 0.00 0.00 0.00 4.40
2701 3919 1.729267 ATCCACCCATACCCATGCCC 61.729 60.000 0.00 0.00 0.00 5.36
2702 3920 2.198426 CACCCATACCCATGCCCC 59.802 66.667 0.00 0.00 0.00 5.80
2703 3921 3.110031 ACCCATACCCATGCCCCC 61.110 66.667 0.00 0.00 0.00 5.40
2704 3922 4.284550 CCCATACCCATGCCCCCG 62.285 72.222 0.00 0.00 0.00 5.73
2705 3923 4.284550 CCATACCCATGCCCCCGG 62.285 72.222 0.00 0.00 0.00 5.73
2711 3929 3.733972 CCATGCCCCCGGGTACAA 61.734 66.667 21.85 1.73 37.65 2.41
2712 3930 2.357056 CATGCCCCCGGGTACAAA 59.643 61.111 21.85 0.00 37.65 2.83
2713 3931 1.752694 CATGCCCCCGGGTACAAAG 60.753 63.158 21.85 10.23 37.65 2.77
2714 3932 3.655350 ATGCCCCCGGGTACAAAGC 62.655 63.158 21.85 12.46 37.65 3.51
2716 3934 3.335729 CCCCCGGGTACAAAGCCT 61.336 66.667 21.85 0.00 41.39 4.58
2717 3935 2.761160 CCCCGGGTACAAAGCCTT 59.239 61.111 21.85 0.00 41.39 4.35
2718 3936 1.677633 CCCCGGGTACAAAGCCTTG 60.678 63.158 21.85 0.00 41.39 3.61
2719 3937 2.340328 CCCGGGTACAAAGCCTTGC 61.340 63.158 14.18 0.00 41.39 4.01
2720 3938 2.340328 CCGGGTACAAAGCCTTGCC 61.340 63.158 0.00 0.00 41.39 4.52
2721 3939 1.602323 CGGGTACAAAGCCTTGCCA 60.602 57.895 0.00 0.00 41.39 4.92
2722 3940 0.965363 CGGGTACAAAGCCTTGCCAT 60.965 55.000 0.00 0.00 41.39 4.40
2723 3941 0.532115 GGGTACAAAGCCTTGCCATG 59.468 55.000 0.00 0.00 40.33 3.66
2724 3942 0.108662 GGTACAAAGCCTTGCCATGC 60.109 55.000 0.00 0.00 35.84 4.06
2725 3943 0.108662 GTACAAAGCCTTGCCATGCC 60.109 55.000 0.00 0.00 35.84 4.40
2726 3944 1.257055 TACAAAGCCTTGCCATGCCC 61.257 55.000 0.00 0.00 35.84 5.36
2727 3945 2.203818 AAAGCCTTGCCATGCCCA 60.204 55.556 0.00 0.00 0.00 5.36
2728 3946 1.614226 AAAGCCTTGCCATGCCCAT 60.614 52.632 0.00 0.00 0.00 4.00
2729 3947 0.325484 AAAGCCTTGCCATGCCCATA 60.325 50.000 0.00 0.00 0.00 2.74
2730 3948 1.044790 AAGCCTTGCCATGCCCATAC 61.045 55.000 0.00 0.00 0.00 2.39
2731 3949 2.501602 GCCTTGCCATGCCCATACC 61.502 63.158 0.00 0.00 0.00 2.73
2732 3950 1.833934 CCTTGCCATGCCCATACCC 60.834 63.158 0.00 0.00 0.00 3.69
2733 3951 1.076118 CTTGCCATGCCCATACCCA 60.076 57.895 0.00 0.00 0.00 4.51
2734 3952 1.076118 TTGCCATGCCCATACCCAG 60.076 57.895 0.00 0.00 0.00 4.45
2735 3953 1.873178 TTGCCATGCCCATACCCAGT 61.873 55.000 0.00 0.00 0.00 4.00
2736 3954 1.076044 GCCATGCCCATACCCAGTT 60.076 57.895 0.00 0.00 0.00 3.16
2737 3955 1.394266 GCCATGCCCATACCCAGTTG 61.394 60.000 0.00 0.00 0.00 3.16
2738 3956 0.756442 CCATGCCCATACCCAGTTGG 60.756 60.000 0.00 0.00 41.37 3.77
2748 3966 3.281332 CCCAGTTGGTACCCAATGG 57.719 57.895 22.32 22.32 45.80 3.16
2763 3981 3.889815 CCAATGGGAAGCTCAATAGTCA 58.110 45.455 0.00 0.00 35.59 3.41
2764 3982 4.272489 CCAATGGGAAGCTCAATAGTCAA 58.728 43.478 0.00 0.00 35.59 3.18
2765 3983 4.891756 CCAATGGGAAGCTCAATAGTCAAT 59.108 41.667 0.00 0.00 35.59 2.57
2766 3984 6.064060 CCAATGGGAAGCTCAATAGTCAATA 58.936 40.000 0.00 0.00 35.59 1.90
2767 3985 6.016777 CCAATGGGAAGCTCAATAGTCAATAC 60.017 42.308 0.00 0.00 35.59 1.89
2768 3986 5.692115 TGGGAAGCTCAATAGTCAATACA 57.308 39.130 0.00 0.00 0.00 2.29
2769 3987 5.428253 TGGGAAGCTCAATAGTCAATACAC 58.572 41.667 0.00 0.00 0.00 2.90
2770 3988 4.816925 GGGAAGCTCAATAGTCAATACACC 59.183 45.833 0.00 0.00 0.00 4.16
2771 3989 5.396884 GGGAAGCTCAATAGTCAATACACCT 60.397 44.000 0.00 0.00 0.00 4.00
2772 3990 6.183360 GGGAAGCTCAATAGTCAATACACCTA 60.183 42.308 0.00 0.00 0.00 3.08
2773 3991 7.445945 GGAAGCTCAATAGTCAATACACCTAT 58.554 38.462 0.00 0.00 0.00 2.57
2774 3992 7.934120 GGAAGCTCAATAGTCAATACACCTATT 59.066 37.037 0.00 0.00 32.92 1.73
2775 3993 8.668510 AAGCTCAATAGTCAATACACCTATTG 57.331 34.615 10.80 10.80 44.70 1.90
2832 4050 9.280174 AGAAATACGAAATTGAACCTAGTTTCA 57.720 29.630 0.00 0.00 33.55 2.69
2834 4052 9.840427 AAATACGAAATTGAACCTAGTTTCATG 57.160 29.630 3.30 0.00 35.42 3.07
2835 4053 8.786826 ATACGAAATTGAACCTAGTTTCATGA 57.213 30.769 3.30 0.00 35.42 3.07
2836 4054 6.899114 ACGAAATTGAACCTAGTTTCATGAC 58.101 36.000 3.30 0.00 35.42 3.06
2837 4055 6.485313 ACGAAATTGAACCTAGTTTCATGACA 59.515 34.615 3.30 0.00 35.42 3.58
2838 4056 7.174946 ACGAAATTGAACCTAGTTTCATGACAT 59.825 33.333 3.30 0.00 35.42 3.06
2839 4057 7.482743 CGAAATTGAACCTAGTTTCATGACATG 59.517 37.037 9.28 9.28 35.42 3.21
2840 4058 6.764308 ATTGAACCTAGTTTCATGACATGG 57.236 37.500 15.37 0.00 35.42 3.66
2841 4059 5.241403 TGAACCTAGTTTCATGACATGGT 57.759 39.130 15.37 0.64 30.29 3.55
2842 4060 6.367374 TGAACCTAGTTTCATGACATGGTA 57.633 37.500 15.37 1.62 30.29 3.25
2843 4061 6.774673 TGAACCTAGTTTCATGACATGGTAA 58.225 36.000 15.37 7.55 30.29 2.85
2844 4062 7.227873 TGAACCTAGTTTCATGACATGGTAAA 58.772 34.615 15.37 6.87 30.29 2.01
2845 4063 7.721842 TGAACCTAGTTTCATGACATGGTAAAA 59.278 33.333 15.37 6.19 30.29 1.52
2846 4064 7.687941 ACCTAGTTTCATGACATGGTAAAAG 57.312 36.000 15.37 7.98 0.00 2.27
2847 4065 7.458397 ACCTAGTTTCATGACATGGTAAAAGA 58.542 34.615 15.37 1.39 0.00 2.52
2848 4066 7.942341 ACCTAGTTTCATGACATGGTAAAAGAA 59.058 33.333 15.37 0.00 0.00 2.52
2849 4067 8.454106 CCTAGTTTCATGACATGGTAAAAGAAG 58.546 37.037 15.37 8.43 0.00 2.85
2850 4068 7.219484 AGTTTCATGACATGGTAAAAGAAGG 57.781 36.000 15.37 0.00 0.00 3.46
2851 4069 7.004086 AGTTTCATGACATGGTAAAAGAAGGA 58.996 34.615 15.37 0.00 0.00 3.36
2852 4070 6.817765 TTCATGACATGGTAAAAGAAGGAC 57.182 37.500 15.37 0.00 0.00 3.85
2853 4071 6.126863 TCATGACATGGTAAAAGAAGGACT 57.873 37.500 15.37 0.00 0.00 3.85
2854 4072 6.542821 TCATGACATGGTAAAAGAAGGACTT 58.457 36.000 15.37 0.00 40.98 3.01
2855 4073 7.685481 TCATGACATGGTAAAAGAAGGACTTA 58.315 34.615 15.37 0.00 37.93 2.24
2856 4074 8.160765 TCATGACATGGTAAAAGAAGGACTTAA 58.839 33.333 15.37 0.00 37.93 1.85
2857 4075 8.792633 CATGACATGGTAAAAGAAGGACTTAAA 58.207 33.333 7.60 0.00 37.93 1.52
2858 4076 8.934023 TGACATGGTAAAAGAAGGACTTAAAT 57.066 30.769 0.00 0.00 37.93 1.40
2874 4092 9.722184 AGGACTTAAATAGTTTTAACAGAGGAC 57.278 33.333 0.00 0.00 37.17 3.85
2875 4093 9.722184 GGACTTAAATAGTTTTAACAGAGGACT 57.278 33.333 0.00 0.00 37.17 3.85
2885 4103 9.628500 AGTTTTAACAGAGGACTTCAATAGTTT 57.372 29.630 0.00 0.00 37.17 2.66
2890 4108 8.974060 AACAGAGGACTTCAATAGTTTACAAA 57.026 30.769 0.00 0.00 37.17 2.83
2891 4109 8.608844 ACAGAGGACTTCAATAGTTTACAAAG 57.391 34.615 0.00 0.00 37.17 2.77
2892 4110 7.661847 ACAGAGGACTTCAATAGTTTACAAAGG 59.338 37.037 0.00 0.00 37.17 3.11
2893 4111 7.119846 CAGAGGACTTCAATAGTTTACAAAGGG 59.880 40.741 0.00 0.00 37.17 3.95
2894 4112 5.710567 AGGACTTCAATAGTTTACAAAGGGC 59.289 40.000 0.00 0.00 37.17 5.19
2895 4113 5.710567 GGACTTCAATAGTTTACAAAGGGCT 59.289 40.000 0.00 0.00 37.17 5.19
2896 4114 6.208797 GGACTTCAATAGTTTACAAAGGGCTT 59.791 38.462 0.00 0.00 37.17 4.35
2897 4115 7.215719 ACTTCAATAGTTTACAAAGGGCTTC 57.784 36.000 0.00 0.00 31.29 3.86
2898 4116 6.775629 ACTTCAATAGTTTACAAAGGGCTTCA 59.224 34.615 0.00 0.00 31.29 3.02
2899 4117 7.451566 ACTTCAATAGTTTACAAAGGGCTTCAT 59.548 33.333 0.00 0.00 31.29 2.57
2900 4118 7.156876 TCAATAGTTTACAAAGGGCTTCATG 57.843 36.000 0.00 0.00 0.00 3.07
2901 4119 3.942130 AGTTTACAAAGGGCTTCATGC 57.058 42.857 0.00 0.00 41.94 4.06
2902 4120 3.230134 AGTTTACAAAGGGCTTCATGCA 58.770 40.909 0.00 0.00 45.15 3.96
2918 4136 2.664567 GCACAGGCACAACAACAAC 58.335 52.632 0.00 0.00 40.72 3.32
2919 4137 0.108898 GCACAGGCACAACAACAACA 60.109 50.000 0.00 0.00 40.72 3.33
2920 4138 1.671261 GCACAGGCACAACAACAACAA 60.671 47.619 0.00 0.00 40.72 2.83
2921 4139 1.991965 CACAGGCACAACAACAACAAC 59.008 47.619 0.00 0.00 0.00 3.32
2922 4140 1.615883 ACAGGCACAACAACAACAACA 59.384 42.857 0.00 0.00 0.00 3.33
2923 4141 2.036475 ACAGGCACAACAACAACAACAA 59.964 40.909 0.00 0.00 0.00 2.83
2924 4142 2.411409 CAGGCACAACAACAACAACAAC 59.589 45.455 0.00 0.00 0.00 3.32
2925 4143 2.036475 AGGCACAACAACAACAACAACA 59.964 40.909 0.00 0.00 0.00 3.33
2926 4144 2.802816 GGCACAACAACAACAACAACAA 59.197 40.909 0.00 0.00 0.00 2.83
2927 4145 3.363477 GGCACAACAACAACAACAACAAC 60.363 43.478 0.00 0.00 0.00 3.32
2928 4146 3.246226 GCACAACAACAACAACAACAACA 59.754 39.130 0.00 0.00 0.00 3.33
2929 4147 4.260375 GCACAACAACAACAACAACAACAA 60.260 37.500 0.00 0.00 0.00 2.83
2930 4148 5.193936 CACAACAACAACAACAACAACAAC 58.806 37.500 0.00 0.00 0.00 3.32
2931 4149 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2932 4150 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2933 4151 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2934 4152 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2935 4153 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2936 4154 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2937 4155 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2938 4156 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2939 4157 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
2940 4158 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
2941 4159 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
2942 4160 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2943 4161 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2944 4162 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.981225 AGTTTATGTTGCTGTGTCAATCTTTTT 59.019 29.630 0.00 0.00 0.00 1.94
41 42 7.491682 AGTTTATGTTGCTGTGTCAATCTTTT 58.508 30.769 0.00 0.00 0.00 2.27
42 43 7.042797 AGTTTATGTTGCTGTGTCAATCTTT 57.957 32.000 0.00 0.00 0.00 2.52
43 44 6.262944 TGAGTTTATGTTGCTGTGTCAATCTT 59.737 34.615 0.00 0.00 0.00 2.40
44 45 5.764686 TGAGTTTATGTTGCTGTGTCAATCT 59.235 36.000 0.00 0.00 0.00 2.40
45 46 6.000891 TGAGTTTATGTTGCTGTGTCAATC 57.999 37.500 0.00 0.00 0.00 2.67
46 47 6.207221 TGATGAGTTTATGTTGCTGTGTCAAT 59.793 34.615 0.00 0.00 0.00 2.57
47 48 5.530543 TGATGAGTTTATGTTGCTGTGTCAA 59.469 36.000 0.00 0.00 0.00 3.18
48 49 5.062528 TGATGAGTTTATGTTGCTGTGTCA 58.937 37.500 0.00 0.00 0.00 3.58
49 50 5.409520 TCTGATGAGTTTATGTTGCTGTGTC 59.590 40.000 0.00 0.00 0.00 3.67
50 51 5.308014 TCTGATGAGTTTATGTTGCTGTGT 58.692 37.500 0.00 0.00 0.00 3.72
51 52 5.868043 TCTGATGAGTTTATGTTGCTGTG 57.132 39.130 0.00 0.00 0.00 3.66
52 53 5.587844 GGATCTGATGAGTTTATGTTGCTGT 59.412 40.000 0.00 0.00 0.00 4.40
53 54 5.587443 TGGATCTGATGAGTTTATGTTGCTG 59.413 40.000 0.00 0.00 0.00 4.41
54 55 5.748402 TGGATCTGATGAGTTTATGTTGCT 58.252 37.500 0.00 0.00 0.00 3.91
55 56 6.441093 TTGGATCTGATGAGTTTATGTTGC 57.559 37.500 0.00 0.00 0.00 4.17
63 64 9.863650 AGATTGATTATTTGGATCTGATGAGTT 57.136 29.630 0.00 0.00 0.00 3.01
64 65 9.286170 CAGATTGATTATTTGGATCTGATGAGT 57.714 33.333 5.90 0.00 43.93 3.41
65 66 8.237949 GCAGATTGATTATTTGGATCTGATGAG 58.762 37.037 13.98 0.00 43.93 2.90
66 67 7.094933 CGCAGATTGATTATTTGGATCTGATGA 60.095 37.037 13.98 0.00 43.93 2.92
67 68 7.021790 CGCAGATTGATTATTTGGATCTGATG 58.978 38.462 13.98 3.77 43.93 3.07
68 69 6.938596 TCGCAGATTGATTATTTGGATCTGAT 59.061 34.615 13.98 0.00 43.93 2.90
69 70 6.290605 TCGCAGATTGATTATTTGGATCTGA 58.709 36.000 13.98 0.00 43.93 3.27
70 71 6.348295 CCTCGCAGATTGATTATTTGGATCTG 60.348 42.308 7.17 7.17 43.99 2.90
71 72 5.704515 CCTCGCAGATTGATTATTTGGATCT 59.295 40.000 0.00 0.00 33.89 2.75
72 73 5.702670 TCCTCGCAGATTGATTATTTGGATC 59.297 40.000 0.00 0.00 33.89 3.36
73 74 5.471456 GTCCTCGCAGATTGATTATTTGGAT 59.529 40.000 0.00 0.00 33.89 3.41
74 75 4.816385 GTCCTCGCAGATTGATTATTTGGA 59.184 41.667 0.00 0.00 33.89 3.53
75 76 4.576053 TGTCCTCGCAGATTGATTATTTGG 59.424 41.667 0.00 0.00 33.89 3.28
76 77 5.739752 TGTCCTCGCAGATTGATTATTTG 57.260 39.130 0.00 0.00 33.89 2.32
77 78 8.450578 TTTATGTCCTCGCAGATTGATTATTT 57.549 30.769 0.00 0.00 33.89 1.40
78 79 8.345565 GTTTTATGTCCTCGCAGATTGATTATT 58.654 33.333 0.00 0.00 33.89 1.40
79 80 7.716998 AGTTTTATGTCCTCGCAGATTGATTAT 59.283 33.333 0.00 0.00 33.89 1.28
80 81 7.047891 AGTTTTATGTCCTCGCAGATTGATTA 58.952 34.615 0.00 0.00 33.89 1.75
81 82 5.882557 AGTTTTATGTCCTCGCAGATTGATT 59.117 36.000 0.00 0.00 33.89 2.57
82 83 5.431765 AGTTTTATGTCCTCGCAGATTGAT 58.568 37.500 0.00 0.00 33.89 2.57
83 84 4.832248 AGTTTTATGTCCTCGCAGATTGA 58.168 39.130 0.00 0.00 33.89 2.57
84 85 4.872691 AGAGTTTTATGTCCTCGCAGATTG 59.127 41.667 0.00 0.00 33.89 2.67
85 86 5.091261 AGAGTTTTATGTCCTCGCAGATT 57.909 39.130 0.00 0.00 33.89 2.40
86 87 4.744795 AGAGTTTTATGTCCTCGCAGAT 57.255 40.909 0.00 0.00 33.89 2.90
87 88 4.537135 AAGAGTTTTATGTCCTCGCAGA 57.463 40.909 0.00 0.00 0.00 4.26
88 89 6.402226 GGTTAAAGAGTTTTATGTCCTCGCAG 60.402 42.308 0.00 0.00 0.00 5.18
89 90 5.410439 GGTTAAAGAGTTTTATGTCCTCGCA 59.590 40.000 0.00 0.00 0.00 5.10
90 91 5.642491 AGGTTAAAGAGTTTTATGTCCTCGC 59.358 40.000 0.00 0.00 0.00 5.03
91 92 6.872020 TGAGGTTAAAGAGTTTTATGTCCTCG 59.128 38.462 0.00 0.00 40.10 4.63
92 93 8.669243 CATGAGGTTAAAGAGTTTTATGTCCTC 58.331 37.037 0.00 0.00 39.16 3.71
93 94 8.383175 TCATGAGGTTAAAGAGTTTTATGTCCT 58.617 33.333 0.00 0.00 32.56 3.85
94 95 8.561738 TCATGAGGTTAAAGAGTTTTATGTCC 57.438 34.615 0.00 0.00 0.00 4.02
95 96 9.436957 TCTCATGAGGTTAAAGAGTTTTATGTC 57.563 33.333 22.42 0.00 0.00 3.06
96 97 9.220767 GTCTCATGAGGTTAAAGAGTTTTATGT 57.779 33.333 22.42 0.00 0.00 2.29
97 98 8.669243 GGTCTCATGAGGTTAAAGAGTTTTATG 58.331 37.037 22.42 0.00 0.00 1.90
98 99 7.549488 CGGTCTCATGAGGTTAAAGAGTTTTAT 59.451 37.037 22.42 0.00 0.00 1.40
99 100 6.872020 CGGTCTCATGAGGTTAAAGAGTTTTA 59.128 38.462 22.42 0.00 0.00 1.52
100 101 5.701290 CGGTCTCATGAGGTTAAAGAGTTTT 59.299 40.000 22.42 0.00 0.00 2.43
101 102 5.221661 ACGGTCTCATGAGGTTAAAGAGTTT 60.222 40.000 22.42 0.00 0.00 2.66
102 103 4.283722 ACGGTCTCATGAGGTTAAAGAGTT 59.716 41.667 22.42 0.00 0.00 3.01
103 104 3.833070 ACGGTCTCATGAGGTTAAAGAGT 59.167 43.478 22.42 8.77 0.00 3.24
104 105 4.425520 GACGGTCTCATGAGGTTAAAGAG 58.574 47.826 22.42 8.21 0.00 2.85
105 106 3.119602 CGACGGTCTCATGAGGTTAAAGA 60.120 47.826 22.42 0.00 0.00 2.52
106 107 3.179830 CGACGGTCTCATGAGGTTAAAG 58.820 50.000 22.42 10.56 0.00 1.85
107 108 2.094390 CCGACGGTCTCATGAGGTTAAA 60.094 50.000 22.42 0.00 0.00 1.52
108 109 1.475280 CCGACGGTCTCATGAGGTTAA 59.525 52.381 22.42 0.00 0.00 2.01
109 110 1.100510 CCGACGGTCTCATGAGGTTA 58.899 55.000 22.42 0.19 0.00 2.85
110 111 0.611062 TCCGACGGTCTCATGAGGTT 60.611 55.000 22.42 4.56 0.00 3.50
111 112 0.611062 TTCCGACGGTCTCATGAGGT 60.611 55.000 22.42 12.51 0.00 3.85
112 113 0.530744 TTTCCGACGGTCTCATGAGG 59.469 55.000 22.42 9.26 0.00 3.86
113 114 2.363788 TTTTCCGACGGTCTCATGAG 57.636 50.000 17.07 17.07 0.00 2.90
114 115 2.823924 TTTTTCCGACGGTCTCATGA 57.176 45.000 14.79 0.00 0.00 3.07
115 116 4.034048 CCTTATTTTTCCGACGGTCTCATG 59.966 45.833 14.79 0.00 0.00 3.07
116 117 4.081309 TCCTTATTTTTCCGACGGTCTCAT 60.081 41.667 14.79 5.31 0.00 2.90
117 118 3.258872 TCCTTATTTTTCCGACGGTCTCA 59.741 43.478 14.79 0.00 0.00 3.27
118 119 3.853475 TCCTTATTTTTCCGACGGTCTC 58.147 45.455 14.79 0.00 0.00 3.36
119 120 3.967332 TCCTTATTTTTCCGACGGTCT 57.033 42.857 14.79 0.00 0.00 3.85
120 121 5.361135 TTTTCCTTATTTTTCCGACGGTC 57.639 39.130 14.79 0.00 0.00 4.79
121 122 5.970317 ATTTTCCTTATTTTTCCGACGGT 57.030 34.783 14.79 0.00 0.00 4.83
122 123 8.920509 ATAAATTTTCCTTATTTTTCCGACGG 57.079 30.769 7.84 7.84 0.00 4.79
150 151 9.516314 CGTCTAGTGATCATAATAGTTTTGTGA 57.484 33.333 0.00 0.00 0.00 3.58
151 152 9.302345 ACGTCTAGTGATCATAATAGTTTTGTG 57.698 33.333 0.00 0.00 0.00 3.33
152 153 9.871238 AACGTCTAGTGATCATAATAGTTTTGT 57.129 29.630 0.00 0.00 0.00 2.83
155 156 9.517609 GTCAACGTCTAGTGATCATAATAGTTT 57.482 33.333 0.00 0.00 0.00 2.66
156 157 8.683615 TGTCAACGTCTAGTGATCATAATAGTT 58.316 33.333 0.00 0.00 0.00 2.24
157 158 8.221965 TGTCAACGTCTAGTGATCATAATAGT 57.778 34.615 0.00 0.00 0.00 2.12
158 159 9.516314 TTTGTCAACGTCTAGTGATCATAATAG 57.484 33.333 0.00 2.56 0.00 1.73
159 160 9.516314 CTTTGTCAACGTCTAGTGATCATAATA 57.484 33.333 0.00 0.00 0.00 0.98
160 161 8.251026 TCTTTGTCAACGTCTAGTGATCATAAT 58.749 33.333 0.00 0.00 0.00 1.28
161 162 7.599171 TCTTTGTCAACGTCTAGTGATCATAA 58.401 34.615 0.00 0.00 0.00 1.90
162 163 7.153217 TCTTTGTCAACGTCTAGTGATCATA 57.847 36.000 0.00 0.00 0.00 2.15
163 164 6.025749 TCTTTGTCAACGTCTAGTGATCAT 57.974 37.500 0.00 0.00 0.00 2.45
164 165 5.447624 TCTTTGTCAACGTCTAGTGATCA 57.552 39.130 0.00 0.00 0.00 2.92
165 166 6.764877 TTTCTTTGTCAACGTCTAGTGATC 57.235 37.500 0.00 0.00 0.00 2.92
166 167 6.761714 ACTTTTCTTTGTCAACGTCTAGTGAT 59.238 34.615 0.00 0.00 0.00 3.06
167 168 6.103997 ACTTTTCTTTGTCAACGTCTAGTGA 58.896 36.000 0.00 0.00 0.00 3.41
168 169 6.255887 AGACTTTTCTTTGTCAACGTCTAGTG 59.744 38.462 0.00 0.00 35.81 2.74
169 170 6.338937 AGACTTTTCTTTGTCAACGTCTAGT 58.661 36.000 0.00 0.00 35.81 2.57
170 171 6.830114 AGACTTTTCTTTGTCAACGTCTAG 57.170 37.500 0.00 0.00 35.81 2.43
171 172 8.706492 TTAAGACTTTTCTTTGTCAACGTCTA 57.294 30.769 0.00 0.00 39.17 2.59
172 173 7.605410 TTAAGACTTTTCTTTGTCAACGTCT 57.395 32.000 0.00 0.00 39.17 4.18
173 174 8.120465 TCATTAAGACTTTTCTTTGTCAACGTC 58.880 33.333 0.00 0.00 39.17 4.34
174 175 7.981142 TCATTAAGACTTTTCTTTGTCAACGT 58.019 30.769 0.00 0.00 39.17 3.99
175 176 9.107367 GATCATTAAGACTTTTCTTTGTCAACG 57.893 33.333 0.00 0.00 39.17 4.10
176 177 9.399403 GGATCATTAAGACTTTTCTTTGTCAAC 57.601 33.333 0.00 0.00 39.17 3.18
177 178 8.289618 CGGATCATTAAGACTTTTCTTTGTCAA 58.710 33.333 0.00 0.00 39.17 3.18
178 179 7.659799 TCGGATCATTAAGACTTTTCTTTGTCA 59.340 33.333 0.00 0.00 39.17 3.58
179 180 8.029642 TCGGATCATTAAGACTTTTCTTTGTC 57.970 34.615 0.00 0.00 39.17 3.18
180 181 7.119846 CCTCGGATCATTAAGACTTTTCTTTGT 59.880 37.037 0.00 0.00 39.17 2.83
181 182 7.119846 ACCTCGGATCATTAAGACTTTTCTTTG 59.880 37.037 0.00 0.00 39.17 2.77
182 183 7.168905 ACCTCGGATCATTAAGACTTTTCTTT 58.831 34.615 0.00 0.00 39.17 2.52
183 184 6.712276 ACCTCGGATCATTAAGACTTTTCTT 58.288 36.000 0.00 0.00 44.70 2.52
184 185 6.301169 ACCTCGGATCATTAAGACTTTTCT 57.699 37.500 0.00 0.00 0.00 2.52
185 186 5.524281 GGACCTCGGATCATTAAGACTTTTC 59.476 44.000 0.00 0.00 0.00 2.29
186 187 5.429130 GGACCTCGGATCATTAAGACTTTT 58.571 41.667 0.00 0.00 0.00 2.27
187 188 4.141688 GGGACCTCGGATCATTAAGACTTT 60.142 45.833 0.00 0.00 0.00 2.66
188 189 3.388350 GGGACCTCGGATCATTAAGACTT 59.612 47.826 0.00 0.00 0.00 3.01
189 190 2.966516 GGGACCTCGGATCATTAAGACT 59.033 50.000 0.00 0.00 0.00 3.24
190 191 3.388345 GGGACCTCGGATCATTAAGAC 57.612 52.381 0.00 0.00 0.00 3.01
212 213 1.129437 GTCATTTTGACGCTGAGAGGC 59.871 52.381 0.00 0.00 37.67 4.70
222 223 4.323515 CGCCTCCAGCTGTCATTTTGAC 62.324 54.545 13.81 0.69 40.85 3.18
223 224 1.538047 GCCTCCAGCTGTCATTTTGA 58.462 50.000 13.81 0.00 38.99 2.69
224 225 0.169672 CGCCTCCAGCTGTCATTTTG 59.830 55.000 13.81 0.00 40.39 2.44
225 226 0.036732 TCGCCTCCAGCTGTCATTTT 59.963 50.000 13.81 0.00 40.39 1.82
226 227 0.392193 CTCGCCTCCAGCTGTCATTT 60.392 55.000 13.81 0.00 40.39 2.32
227 228 1.220206 CTCGCCTCCAGCTGTCATT 59.780 57.895 13.81 0.00 40.39 2.57
228 229 1.674764 CTCTCGCCTCCAGCTGTCAT 61.675 60.000 13.81 0.00 40.39 3.06
229 230 2.283173 TCTCGCCTCCAGCTGTCA 60.283 61.111 13.81 0.00 40.39 3.58
230 231 2.493973 CTCTCGCCTCCAGCTGTC 59.506 66.667 13.81 0.00 40.39 3.51
231 232 3.073735 CCTCTCGCCTCCAGCTGT 61.074 66.667 13.81 0.00 40.39 4.40
232 233 2.757508 TCCTCTCGCCTCCAGCTG 60.758 66.667 6.78 6.78 40.39 4.24
233 234 2.441901 CTCCTCTCGCCTCCAGCT 60.442 66.667 0.00 0.00 40.39 4.24
234 235 4.219999 GCTCCTCTCGCCTCCAGC 62.220 72.222 0.00 0.00 38.52 4.85
235 236 0.753479 TTAGCTCCTCTCGCCTCCAG 60.753 60.000 0.00 0.00 0.00 3.86
236 237 0.753479 CTTAGCTCCTCTCGCCTCCA 60.753 60.000 0.00 0.00 0.00 3.86
237 238 0.466555 TCTTAGCTCCTCTCGCCTCC 60.467 60.000 0.00 0.00 0.00 4.30
238 239 0.951558 CTCTTAGCTCCTCTCGCCTC 59.048 60.000 0.00 0.00 0.00 4.70
239 240 1.106944 GCTCTTAGCTCCTCTCGCCT 61.107 60.000 0.00 0.00 38.45 5.52
240 241 1.362355 GCTCTTAGCTCCTCTCGCC 59.638 63.158 0.00 0.00 38.45 5.54
241 242 0.673437 ATGCTCTTAGCTCCTCTCGC 59.327 55.000 0.00 0.00 42.97 5.03
242 243 4.782019 ATTATGCTCTTAGCTCCTCTCG 57.218 45.455 0.00 0.00 42.97 4.04
243 244 5.221621 ACCAATTATGCTCTTAGCTCCTCTC 60.222 44.000 0.00 0.00 42.97 3.20
244 245 4.657969 ACCAATTATGCTCTTAGCTCCTCT 59.342 41.667 0.00 0.00 42.97 3.69
245 246 4.967036 ACCAATTATGCTCTTAGCTCCTC 58.033 43.478 0.00 0.00 42.97 3.71
246 247 5.379706 AACCAATTATGCTCTTAGCTCCT 57.620 39.130 0.00 0.00 42.97 3.69
247 248 5.734503 GCAAACCAATTATGCTCTTAGCTCC 60.735 44.000 0.00 0.00 42.97 4.70
248 249 5.067023 AGCAAACCAATTATGCTCTTAGCTC 59.933 40.000 0.00 0.00 46.98 4.09
249 250 4.952335 AGCAAACCAATTATGCTCTTAGCT 59.048 37.500 0.00 0.00 46.98 3.32
250 251 5.039333 CAGCAAACCAATTATGCTCTTAGC 58.961 41.667 0.00 0.00 46.98 3.09
251 252 5.039333 GCAGCAAACCAATTATGCTCTTAG 58.961 41.667 0.00 0.00 46.98 2.18
252 253 4.142182 GGCAGCAAACCAATTATGCTCTTA 60.142 41.667 0.00 0.00 46.98 2.10
253 254 3.368739 GGCAGCAAACCAATTATGCTCTT 60.369 43.478 0.00 0.00 46.98 2.85
254 255 2.167075 GGCAGCAAACCAATTATGCTCT 59.833 45.455 0.00 0.00 46.98 4.09
255 256 2.094078 TGGCAGCAAACCAATTATGCTC 60.094 45.455 0.00 0.00 46.98 4.26
257 258 2.383368 TGGCAGCAAACCAATTATGC 57.617 45.000 0.00 0.00 40.34 3.14
258 259 5.686159 TTTTTGGCAGCAAACCAATTATG 57.314 34.783 6.01 0.00 46.25 1.90
259 260 6.294620 CCAATTTTTGGCAGCAAACCAATTAT 60.295 34.615 6.01 1.48 46.25 1.28
260 261 5.009410 CCAATTTTTGGCAGCAAACCAATTA 59.991 36.000 6.01 0.00 46.25 1.40
261 262 4.202131 CCAATTTTTGGCAGCAAACCAATT 60.202 37.500 6.01 0.00 46.25 2.32
262 263 3.318557 CCAATTTTTGGCAGCAAACCAAT 59.681 39.130 6.01 0.00 46.25 3.16
263 264 2.686915 CCAATTTTTGGCAGCAAACCAA 59.313 40.909 0.00 1.35 45.17 3.67
264 265 2.295885 CCAATTTTTGGCAGCAAACCA 58.704 42.857 0.00 0.00 45.17 3.67
279 280 2.037121 GCCAACCAAGTAGTTGCCAATT 59.963 45.455 4.65 0.00 44.71 2.32
299 300 7.010183 TGTGAGATAAGCAAAATAACTCGTAGC 59.990 37.037 0.00 0.00 0.00 3.58
371 372 3.323115 TGGCTTGTCAAATGTTGGCATTA 59.677 39.130 0.00 0.00 45.87 1.90
422 1600 3.629398 GTCCATCGCCATCTGAGAAATTT 59.371 43.478 0.00 0.00 0.00 1.82
423 1601 3.209410 GTCCATCGCCATCTGAGAAATT 58.791 45.455 0.00 0.00 0.00 1.82
424 1602 2.171237 TGTCCATCGCCATCTGAGAAAT 59.829 45.455 0.00 0.00 0.00 2.17
425 1603 1.554617 TGTCCATCGCCATCTGAGAAA 59.445 47.619 0.00 0.00 0.00 2.52
451 1631 4.009370 ACTTCTAGTGAGGGTTTCTTGC 57.991 45.455 0.00 0.00 0.00 4.01
453 1633 5.841783 AGAGAACTTCTAGTGAGGGTTTCTT 59.158 40.000 0.00 0.00 33.23 2.52
466 1646 2.161808 CGAGCAACCGAGAGAACTTCTA 59.838 50.000 0.00 0.00 35.87 2.10
646 1836 0.920438 AGGAGAGCCGGAGAGACTTA 59.080 55.000 5.05 0.00 39.96 2.24
667 1857 4.115199 CTGGGCGAAGGGGAAGGG 62.115 72.222 0.00 0.00 0.00 3.95
668 1858 4.803908 GCTGGGCGAAGGGGAAGG 62.804 72.222 0.00 0.00 0.00 3.46
669 1859 3.984193 CTGCTGGGCGAAGGGGAAG 62.984 68.421 0.00 0.00 0.00 3.46
670 1860 4.033776 CTGCTGGGCGAAGGGGAA 62.034 66.667 0.00 0.00 0.00 3.97
865 2065 3.292159 GAAACCGGGCCAAAGCGT 61.292 61.111 6.32 0.00 41.24 5.07
882 2082 2.262915 GTGGACGTGGAGCTGAGG 59.737 66.667 0.00 0.00 0.00 3.86
935 2135 2.157668 CGACGACCAAGGTTCTGATTTG 59.842 50.000 0.00 0.00 0.00 2.32
951 2151 3.872728 CGATCGCCCAGTCGACGA 61.873 66.667 10.46 3.44 41.62 4.20
1083 2283 4.816984 ACGGAGGCGGATCGGAGT 62.817 66.667 4.16 0.00 0.00 3.85
1118 2318 4.838486 GGAGCGCAGAGACCGTCG 62.838 72.222 11.47 0.00 0.00 5.12
1141 2341 2.268076 ATGCAGGGCAAACACCGAC 61.268 57.895 0.00 0.00 43.62 4.79
1167 2367 3.375299 CAGTGCAATAGAGTAAACAGGGC 59.625 47.826 0.00 0.00 0.00 5.19
1227 2430 0.973632 TGTAGGCCTTTCGCTCTGAA 59.026 50.000 12.58 0.00 37.74 3.02
1230 2433 1.192146 TGGTGTAGGCCTTTCGCTCT 61.192 55.000 12.58 0.00 37.74 4.09
1251 2454 0.195096 TGGGAGGTTCAGGTAAGGGT 59.805 55.000 0.00 0.00 0.00 4.34
1255 2458 2.983192 TGTTGATGGGAGGTTCAGGTAA 59.017 45.455 0.00 0.00 0.00 2.85
1257 2460 1.444933 TGTTGATGGGAGGTTCAGGT 58.555 50.000 0.00 0.00 0.00 4.00
1310 2513 3.128242 CAGGTCAGACTTTTCATCCATGC 59.872 47.826 0.00 0.00 0.00 4.06
1348 2551 1.271001 TGCAATCCTGTCACCAGTGAG 60.271 52.381 0.00 0.00 40.75 3.51
1682 2888 3.884895 TCGGTCATTGCATAGAACCATT 58.115 40.909 8.29 0.00 0.00 3.16
1741 2947 4.574599 AAACTCTTTTGTGGATGACAGC 57.425 40.909 0.00 0.00 35.44 4.40
1887 3099 9.382275 AGCAAAATCTTGTACACTTCAATTTTT 57.618 25.926 0.00 0.00 34.79 1.94
1982 3198 9.658799 TCTGAATAATCCTTCACACTAAAGAAG 57.341 33.333 0.00 0.00 40.64 2.85
2189 3405 5.823045 AGGAGAAGTTGAAACAGTACCTTTG 59.177 40.000 0.00 0.00 0.00 2.77
2258 3476 8.579850 AATTAAATGAGAGAATGGTTGCTGTA 57.420 30.769 0.00 0.00 0.00 2.74
2524 3742 2.222007 GTGCAAAACACTGCCATTGA 57.778 45.000 0.00 0.00 46.41 2.57
2648 3866 3.071457 TGAGCATGTCAGGTATGGGTATG 59.929 47.826 0.00 0.00 0.00 2.39
2649 3867 3.317406 TGAGCATGTCAGGTATGGGTAT 58.683 45.455 0.00 0.00 0.00 2.73
2650 3868 2.758130 TGAGCATGTCAGGTATGGGTA 58.242 47.619 0.00 0.00 0.00 3.69
2651 3869 1.583556 TGAGCATGTCAGGTATGGGT 58.416 50.000 0.00 0.00 0.00 4.51
2652 3870 2.501261 CATGAGCATGTCAGGTATGGG 58.499 52.381 2.34 0.00 39.07 4.00
2663 3881 3.305131 GGATATTGGCACACATGAGCATG 60.305 47.826 8.82 8.82 44.15 4.06
2664 3882 2.889045 GGATATTGGCACACATGAGCAT 59.111 45.455 0.00 0.00 39.29 3.79
2665 3883 2.300433 GGATATTGGCACACATGAGCA 58.700 47.619 0.00 0.00 39.29 4.26
2666 3884 2.033801 GTGGATATTGGCACACATGAGC 59.966 50.000 0.00 0.00 39.29 4.26
2667 3885 2.620115 GGTGGATATTGGCACACATGAG 59.380 50.000 0.00 0.00 39.29 2.90
2668 3886 2.653726 GGTGGATATTGGCACACATGA 58.346 47.619 0.00 0.00 39.29 3.07
2669 3887 1.682854 GGGTGGATATTGGCACACATG 59.317 52.381 7.38 0.00 39.29 3.21
2670 3888 1.287442 TGGGTGGATATTGGCACACAT 59.713 47.619 7.38 0.00 39.29 3.21
2671 3889 0.701147 TGGGTGGATATTGGCACACA 59.299 50.000 7.38 0.00 39.29 3.72
2672 3890 2.071778 ATGGGTGGATATTGGCACAC 57.928 50.000 0.00 0.00 39.29 3.82
2673 3891 2.158534 GGTATGGGTGGATATTGGCACA 60.159 50.000 0.00 0.00 0.00 4.57
2674 3892 2.514803 GGTATGGGTGGATATTGGCAC 58.485 52.381 0.00 0.00 0.00 5.01
2675 3893 1.427368 GGGTATGGGTGGATATTGGCA 59.573 52.381 0.00 0.00 0.00 4.92
2676 3894 1.427368 TGGGTATGGGTGGATATTGGC 59.573 52.381 0.00 0.00 0.00 4.52
2677 3895 3.700538 CATGGGTATGGGTGGATATTGG 58.299 50.000 0.00 0.00 0.00 3.16
2678 3896 3.091545 GCATGGGTATGGGTGGATATTG 58.908 50.000 0.00 0.00 34.79 1.90
2679 3897 2.042979 GGCATGGGTATGGGTGGATATT 59.957 50.000 0.00 0.00 34.79 1.28
2680 3898 1.640670 GGCATGGGTATGGGTGGATAT 59.359 52.381 0.00 0.00 34.79 1.63
2681 3899 1.072266 GGCATGGGTATGGGTGGATA 58.928 55.000 0.00 0.00 34.79 2.59
2682 3900 1.729267 GGGCATGGGTATGGGTGGAT 61.729 60.000 0.00 0.00 34.79 3.41
2683 3901 2.391130 GGGCATGGGTATGGGTGGA 61.391 63.158 0.00 0.00 34.79 4.02
2684 3902 2.198426 GGGCATGGGTATGGGTGG 59.802 66.667 0.00 0.00 34.79 4.61
2685 3903 2.198426 GGGGCATGGGTATGGGTG 59.802 66.667 0.00 0.00 34.79 4.61
2686 3904 3.110031 GGGGGCATGGGTATGGGT 61.110 66.667 0.00 0.00 34.79 4.51
2687 3905 4.284550 CGGGGGCATGGGTATGGG 62.285 72.222 0.00 0.00 34.79 4.00
2688 3906 4.284550 CCGGGGGCATGGGTATGG 62.285 72.222 0.00 0.00 34.79 2.74
2689 3907 4.284550 CCCGGGGGCATGGGTATG 62.285 72.222 14.71 0.00 40.76 2.39
2694 3912 3.289583 TTTGTACCCGGGGGCATGG 62.290 63.158 27.92 0.00 39.32 3.66
2695 3913 1.752694 CTTTGTACCCGGGGGCATG 60.753 63.158 27.92 14.19 39.32 4.06
2696 3914 2.680965 CTTTGTACCCGGGGGCAT 59.319 61.111 27.92 5.89 39.32 4.40
2697 3915 4.354162 GCTTTGTACCCGGGGGCA 62.354 66.667 27.92 20.27 39.32 5.36
2699 3917 2.914310 AAGGCTTTGTACCCGGGGG 61.914 63.158 27.92 5.70 42.03 5.40
2700 3918 1.677633 CAAGGCTTTGTACCCGGGG 60.678 63.158 27.92 12.73 0.00 5.73
2701 3919 2.340328 GCAAGGCTTTGTACCCGGG 61.340 63.158 22.25 22.25 36.65 5.73
2702 3920 2.340328 GGCAAGGCTTTGTACCCGG 61.340 63.158 10.54 0.00 36.65 5.73
2703 3921 0.965363 ATGGCAAGGCTTTGTACCCG 60.965 55.000 10.54 0.00 36.65 5.28
2704 3922 0.532115 CATGGCAAGGCTTTGTACCC 59.468 55.000 10.54 3.72 36.65 3.69
2705 3923 0.108662 GCATGGCAAGGCTTTGTACC 60.109 55.000 10.54 4.44 36.65 3.34
2706 3924 0.108662 GGCATGGCAAGGCTTTGTAC 60.109 55.000 15.47 4.60 36.65 2.90
2707 3925 1.257055 GGGCATGGCAAGGCTTTGTA 61.257 55.000 22.06 0.41 36.65 2.41
2708 3926 2.586293 GGGCATGGCAAGGCTTTGT 61.586 57.895 22.06 0.00 36.65 2.83
2709 3927 1.906105 ATGGGCATGGCAAGGCTTTG 61.906 55.000 22.06 3.80 37.36 2.77
2710 3928 0.325484 TATGGGCATGGCAAGGCTTT 60.325 50.000 22.06 6.51 32.40 3.51
2711 3929 1.044790 GTATGGGCATGGCAAGGCTT 61.045 55.000 22.06 6.84 32.40 4.35
2712 3930 1.456331 GTATGGGCATGGCAAGGCT 60.456 57.895 22.06 0.00 32.40 4.58
2713 3931 2.501602 GGTATGGGCATGGCAAGGC 61.502 63.158 22.06 7.85 0.00 4.35
2714 3932 1.833934 GGGTATGGGCATGGCAAGG 60.834 63.158 22.06 0.00 0.00 3.61
2715 3933 1.076118 TGGGTATGGGCATGGCAAG 60.076 57.895 22.06 0.00 0.00 4.01
2716 3934 1.076118 CTGGGTATGGGCATGGCAA 60.076 57.895 22.06 10.89 0.00 4.52
2717 3935 1.873178 AACTGGGTATGGGCATGGCA 61.873 55.000 22.06 7.72 0.00 4.92
2718 3936 1.076044 AACTGGGTATGGGCATGGC 60.076 57.895 11.56 11.56 0.00 4.40
2719 3937 0.756442 CCAACTGGGTATGGGCATGG 60.756 60.000 0.00 0.00 32.87 3.66
2720 3938 2.811307 CCAACTGGGTATGGGCATG 58.189 57.895 0.00 0.00 32.87 4.06
2738 3956 2.507407 TTGAGCTTCCCATTGGGTAC 57.493 50.000 21.31 11.72 44.74 3.34
2739 3957 3.785887 ACTATTGAGCTTCCCATTGGGTA 59.214 43.478 21.31 11.30 44.74 3.69
2740 3958 2.582636 ACTATTGAGCTTCCCATTGGGT 59.417 45.455 21.31 1.52 44.74 4.51
2741 3959 3.217626 GACTATTGAGCTTCCCATTGGG 58.782 50.000 16.26 16.26 46.11 4.12
2742 3960 3.889815 TGACTATTGAGCTTCCCATTGG 58.110 45.455 0.00 0.00 0.00 3.16
2743 3961 6.543465 TGTATTGACTATTGAGCTTCCCATTG 59.457 38.462 0.00 0.00 0.00 2.82
2744 3962 6.543831 GTGTATTGACTATTGAGCTTCCCATT 59.456 38.462 0.00 0.00 0.00 3.16
2745 3963 6.058183 GTGTATTGACTATTGAGCTTCCCAT 58.942 40.000 0.00 0.00 0.00 4.00
2746 3964 5.428253 GTGTATTGACTATTGAGCTTCCCA 58.572 41.667 0.00 0.00 0.00 4.37
2747 3965 4.816925 GGTGTATTGACTATTGAGCTTCCC 59.183 45.833 0.00 0.00 0.00 3.97
2748 3966 5.675538 AGGTGTATTGACTATTGAGCTTCC 58.324 41.667 0.00 0.00 0.00 3.46
2749 3967 8.894768 AATAGGTGTATTGACTATTGAGCTTC 57.105 34.615 0.00 0.00 36.39 3.86
2806 4024 9.280174 TGAAACTAGGTTCAATTTCGTATTTCT 57.720 29.630 20.91 0.00 34.59 2.52
2808 4026 9.840427 CATGAAACTAGGTTCAATTTCGTATTT 57.160 29.630 26.27 3.76 40.76 1.40
2809 4027 9.226606 TCATGAAACTAGGTTCAATTTCGTATT 57.773 29.630 26.27 4.51 40.76 1.89
2810 4028 8.665685 GTCATGAAACTAGGTTCAATTTCGTAT 58.334 33.333 26.27 5.25 40.76 3.06
2811 4029 7.658167 TGTCATGAAACTAGGTTCAATTTCGTA 59.342 33.333 26.27 7.51 40.76 3.43
2812 4030 6.485313 TGTCATGAAACTAGGTTCAATTTCGT 59.515 34.615 26.27 6.76 40.76 3.85
2813 4031 6.898041 TGTCATGAAACTAGGTTCAATTTCG 58.102 36.000 26.27 12.71 40.76 3.46
2814 4032 7.756722 CCATGTCATGAAACTAGGTTCAATTTC 59.243 37.037 26.27 16.44 40.76 2.17
2815 4033 7.233348 ACCATGTCATGAAACTAGGTTCAATTT 59.767 33.333 26.27 8.29 40.76 1.82
2816 4034 6.721208 ACCATGTCATGAAACTAGGTTCAATT 59.279 34.615 26.27 9.05 40.76 2.32
2817 4035 6.248433 ACCATGTCATGAAACTAGGTTCAAT 58.752 36.000 26.27 12.87 40.76 2.57
2818 4036 5.630121 ACCATGTCATGAAACTAGGTTCAA 58.370 37.500 26.27 11.03 40.76 2.69
2819 4037 5.241403 ACCATGTCATGAAACTAGGTTCA 57.759 39.130 24.88 24.88 41.59 3.18
2820 4038 7.681939 TTTACCATGTCATGAAACTAGGTTC 57.318 36.000 13.89 13.89 32.11 3.62
2821 4039 7.942341 TCTTTTACCATGTCATGAAACTAGGTT 59.058 33.333 14.67 0.00 32.11 3.50
2822 4040 7.458397 TCTTTTACCATGTCATGAAACTAGGT 58.542 34.615 14.67 10.42 33.57 3.08
2823 4041 7.921786 TCTTTTACCATGTCATGAAACTAGG 57.078 36.000 14.67 0.00 0.00 3.02
2824 4042 8.454106 CCTTCTTTTACCATGTCATGAAACTAG 58.546 37.037 14.67 6.21 0.00 2.57
2825 4043 8.160765 TCCTTCTTTTACCATGTCATGAAACTA 58.839 33.333 14.67 0.00 0.00 2.24
2826 4044 7.004086 TCCTTCTTTTACCATGTCATGAAACT 58.996 34.615 14.67 0.00 0.00 2.66
2827 4045 7.040409 AGTCCTTCTTTTACCATGTCATGAAAC 60.040 37.037 14.67 0.00 0.00 2.78
2828 4046 7.004086 AGTCCTTCTTTTACCATGTCATGAAA 58.996 34.615 14.67 5.10 0.00 2.69
2829 4047 6.542821 AGTCCTTCTTTTACCATGTCATGAA 58.457 36.000 14.67 0.00 0.00 2.57
2830 4048 6.126863 AGTCCTTCTTTTACCATGTCATGA 57.873 37.500 14.67 0.00 0.00 3.07
2831 4049 6.824305 AAGTCCTTCTTTTACCATGTCATG 57.176 37.500 5.79 5.79 31.57 3.07
2832 4050 8.934023 TTTAAGTCCTTCTTTTACCATGTCAT 57.066 30.769 0.00 0.00 37.56 3.06
2833 4051 8.934023 ATTTAAGTCCTTCTTTTACCATGTCA 57.066 30.769 0.00 0.00 37.56 3.58
2848 4066 9.722184 GTCCTCTGTTAAAACTATTTAAGTCCT 57.278 33.333 0.00 0.00 40.65 3.85
2849 4067 9.722184 AGTCCTCTGTTAAAACTATTTAAGTCC 57.278 33.333 0.00 0.00 40.65 3.85
2859 4077 9.628500 AAACTATTGAAGTCCTCTGTTAAAACT 57.372 29.630 0.00 0.00 37.50 2.66
2865 4083 8.974060 TTTGTAAACTATTGAAGTCCTCTGTT 57.026 30.769 0.00 0.00 37.50 3.16
2866 4084 7.661847 CCTTTGTAAACTATTGAAGTCCTCTGT 59.338 37.037 0.00 0.00 37.50 3.41
2867 4085 7.119846 CCCTTTGTAAACTATTGAAGTCCTCTG 59.880 40.741 0.00 0.00 37.50 3.35
2868 4086 7.168905 CCCTTTGTAAACTATTGAAGTCCTCT 58.831 38.462 0.00 0.00 37.50 3.69
2869 4087 6.127980 GCCCTTTGTAAACTATTGAAGTCCTC 60.128 42.308 0.00 0.00 37.50 3.71
2870 4088 5.710567 GCCCTTTGTAAACTATTGAAGTCCT 59.289 40.000 0.00 0.00 37.50 3.85
2871 4089 5.710567 AGCCCTTTGTAAACTATTGAAGTCC 59.289 40.000 0.00 0.00 37.50 3.85
2872 4090 6.819397 AGCCCTTTGTAAACTATTGAAGTC 57.181 37.500 0.00 0.00 37.50 3.01
2873 4091 6.775629 TGAAGCCCTTTGTAAACTATTGAAGT 59.224 34.615 0.00 0.00 41.49 3.01
2874 4092 7.214467 TGAAGCCCTTTGTAAACTATTGAAG 57.786 36.000 0.00 0.00 0.00 3.02
2875 4093 7.601856 CATGAAGCCCTTTGTAAACTATTGAA 58.398 34.615 0.00 0.00 0.00 2.69
2876 4094 6.350110 GCATGAAGCCCTTTGTAAACTATTGA 60.350 38.462 0.00 0.00 37.23 2.57
2877 4095 5.807011 GCATGAAGCCCTTTGTAAACTATTG 59.193 40.000 0.00 0.00 37.23 1.90
2878 4096 5.480073 TGCATGAAGCCCTTTGTAAACTATT 59.520 36.000 0.00 0.00 44.83 1.73
2879 4097 5.016173 TGCATGAAGCCCTTTGTAAACTAT 58.984 37.500 0.00 0.00 44.83 2.12
2880 4098 4.217550 GTGCATGAAGCCCTTTGTAAACTA 59.782 41.667 0.00 0.00 44.83 2.24
2881 4099 3.005791 GTGCATGAAGCCCTTTGTAAACT 59.994 43.478 0.00 0.00 44.83 2.66
2882 4100 3.243704 TGTGCATGAAGCCCTTTGTAAAC 60.244 43.478 0.00 0.00 44.83 2.01
2883 4101 2.961741 TGTGCATGAAGCCCTTTGTAAA 59.038 40.909 0.00 0.00 44.83 2.01
2884 4102 2.557924 CTGTGCATGAAGCCCTTTGTAA 59.442 45.455 0.00 0.00 44.83 2.41
2885 4103 2.161855 CTGTGCATGAAGCCCTTTGTA 58.838 47.619 0.00 0.00 44.83 2.41
2886 4104 0.963962 CTGTGCATGAAGCCCTTTGT 59.036 50.000 0.00 0.00 44.83 2.83
2887 4105 0.245539 CCTGTGCATGAAGCCCTTTG 59.754 55.000 0.00 0.00 44.83 2.77
2888 4106 1.538687 GCCTGTGCATGAAGCCCTTT 61.539 55.000 0.00 0.00 44.83 3.11
2889 4107 1.980772 GCCTGTGCATGAAGCCCTT 60.981 57.895 0.00 0.00 44.83 3.95
2890 4108 2.362120 GCCTGTGCATGAAGCCCT 60.362 61.111 0.00 0.00 44.83 5.19
2891 4109 2.677524 TGCCTGTGCATGAAGCCC 60.678 61.111 0.00 0.00 44.23 5.19
2900 4118 0.108898 TGTTGTTGTTGTGCCTGTGC 60.109 50.000 0.00 0.00 38.26 4.57
2901 4119 1.991965 GTTGTTGTTGTTGTGCCTGTG 59.008 47.619 0.00 0.00 0.00 3.66
2902 4120 1.615883 TGTTGTTGTTGTTGTGCCTGT 59.384 42.857 0.00 0.00 0.00 4.00
2903 4121 2.360553 TGTTGTTGTTGTTGTGCCTG 57.639 45.000 0.00 0.00 0.00 4.85
2904 4122 2.036475 TGTTGTTGTTGTTGTTGTGCCT 59.964 40.909 0.00 0.00 0.00 4.75
2905 4123 2.408050 TGTTGTTGTTGTTGTTGTGCC 58.592 42.857 0.00 0.00 0.00 5.01
2906 4124 3.246226 TGTTGTTGTTGTTGTTGTTGTGC 59.754 39.130 0.00 0.00 0.00 4.57
2907 4125 5.193936 GTTGTTGTTGTTGTTGTTGTTGTG 58.806 37.500 0.00 0.00 0.00 3.33
2908 4126 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2909 4127 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2910 4128 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2911 4129 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2912 4130 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2913 4131 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2914 4132 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2915 4133 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2916 4134 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
2917 4135 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
2918 4136 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
2919 4137 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2920 4138 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2921 4139 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2922 4140 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2923 4141 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.