Multiple sequence alignment - TraesCS7D01G333500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G333500 chr7D 100.000 4112 0 0 1 4112 424704857 424708968 0.000000e+00 7594.0
1 TraesCS7D01G333500 chr7D 85.484 124 14 4 3962 4083 424708939 424708818 4.320000e-25 126.0
2 TraesCS7D01G333500 chr7D 96.491 57 1 1 4030 4086 312564471 312564526 4.380000e-15 93.5
3 TraesCS7D01G333500 chr7B 95.632 2129 78 8 1504 3619 442372027 442374153 0.000000e+00 3402.0
4 TraesCS7D01G333500 chr7B 82.762 1108 126 41 301 1374 442370748 442371824 0.000000e+00 928.0
5 TraesCS7D01G333500 chr7A 92.398 1618 84 22 2363 3949 508578450 508576841 0.000000e+00 2270.0
6 TraesCS7D01G333500 chr7A 97.413 1005 26 0 1373 2377 508580332 508579328 0.000000e+00 1712.0
7 TraesCS7D01G333500 chr7A 86.223 842 80 22 366 1185 508581653 508580826 0.000000e+00 880.0
8 TraesCS7D01G333500 chr7A 96.923 65 2 0 3966 4030 433736426 433736490 4.350000e-20 110.0
9 TraesCS7D01G333500 chr4B 94.444 72 4 0 3959 4030 420202867 420202938 1.210000e-20 111.0
10 TraesCS7D01G333500 chr4B 93.333 60 3 1 4022 4080 420202897 420202956 2.040000e-13 87.9
11 TraesCS7D01G333500 chr3D 94.521 73 3 1 3958 4030 324311074 324311145 1.210000e-20 111.0
12 TraesCS7D01G333500 chr3D 93.333 60 3 1 4022 4080 324311104 324311163 2.040000e-13 87.9
13 TraesCS7D01G333500 chr3D 86.957 69 6 3 91 158 590531969 590532035 1.590000e-09 75.0
14 TraesCS7D01G333500 chr3B 94.521 73 3 1 3958 4030 394954639 394954568 1.210000e-20 111.0
15 TraesCS7D01G333500 chr3B 93.056 72 5 0 3958 4029 199529292 199529363 5.620000e-19 106.0
16 TraesCS7D01G333500 chr3A 94.521 73 3 1 3958 4030 397141463 397141392 1.210000e-20 111.0
17 TraesCS7D01G333500 chr3A 91.667 60 4 1 4022 4080 397141433 397141374 9.470000e-12 82.4
18 TraesCS7D01G333500 chr3A 77.778 126 15 7 789 905 479440627 479440748 9.540000e-07 65.8
19 TraesCS7D01G333500 chr1A 83.740 123 14 4 3962 4080 471320620 471320500 1.210000e-20 111.0
20 TraesCS7D01G333500 chr2B 92.308 78 4 2 3953 4030 26955694 26955619 4.350000e-20 110.0
21 TraesCS7D01G333500 chr5B 96.296 54 2 0 4031 4084 70094505 70094558 5.660000e-14 89.8
22 TraesCS7D01G333500 chr5A 96.296 54 2 0 4031 4084 48921441 48921388 5.660000e-14 89.8
23 TraesCS7D01G333500 chr5A 95.238 42 2 0 122 163 431664405 431664446 2.650000e-07 67.6
24 TraesCS7D01G333500 chr2D 91.667 60 4 1 4022 4080 159689006 159688947 9.470000e-12 82.4
25 TraesCS7D01G333500 chr5D 97.778 45 1 0 122 166 170387502 170387546 1.230000e-10 78.7
26 TraesCS7D01G333500 chr2A 97.368 38 1 0 871 908 94115362 94115325 9.540000e-07 65.8
27 TraesCS7D01G333500 chr4A 91.667 48 1 3 122 166 5563381 5563334 3.430000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G333500 chr7D 424704857 424708968 4111 False 7594.000000 7594 100.000000 1 4112 1 chr7D.!!$F2 4111
1 TraesCS7D01G333500 chr7B 442370748 442374153 3405 False 2165.000000 3402 89.197000 301 3619 2 chr7B.!!$F1 3318
2 TraesCS7D01G333500 chr7A 508576841 508581653 4812 True 1620.666667 2270 92.011333 366 3949 3 chr7A.!!$R1 3583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.035439 AAATCGTGTGGGGAAGCGAT 60.035 50.000 0.00 0.00 44.53 4.58 F
279 280 0.108662 TGTCTGCGCACATACAGAGG 60.109 55.000 5.66 0.00 43.30 3.69 F
290 291 0.179018 ATACAGAGGGGCGGATTTGC 60.179 55.000 0.00 0.00 0.00 3.68 F
541 554 0.757188 ACGGGACTAGGCAGATCCTG 60.757 60.000 0.00 0.29 46.98 3.86 F
1680 2143 1.138036 CGCCTTATCGTCGGACACA 59.862 57.895 9.10 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 2098 0.532862 CGGTTGTGAGGTCTGCAGTT 60.533 55.000 14.67 0.29 0.00 3.16 R
1731 2194 0.597637 CGTTGAGTGCCGACTTGAGT 60.598 55.000 0.00 0.00 30.16 3.41 R
1776 2239 1.007238 TCGAGATCCTTCTCCCTTGGT 59.993 52.381 0.00 0.00 44.76 3.67 R
2361 2824 1.122632 TGTTTCCTCCACTGGCGGTA 61.123 55.000 0.00 0.00 0.00 4.02 R
3218 4576 1.401552 CCATTGGTATTCCGCACACAG 59.598 52.381 0.00 0.00 36.30 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.606519 TGGGAGGAAGGACGTGGG 60.607 66.667 0.00 0.00 0.00 4.61
18 19 3.400054 GGGAGGAAGGACGTGGGG 61.400 72.222 0.00 0.00 0.00 4.96
19 20 2.284405 GGAGGAAGGACGTGGGGA 60.284 66.667 0.00 0.00 0.00 4.81
20 21 2.359967 GGAGGAAGGACGTGGGGAG 61.360 68.421 0.00 0.00 0.00 4.30
21 22 2.284699 AGGAAGGACGTGGGGAGG 60.285 66.667 0.00 0.00 0.00 4.30
22 23 2.606826 GGAAGGACGTGGGGAGGT 60.607 66.667 0.00 0.00 0.00 3.85
23 24 2.663196 GAAGGACGTGGGGAGGTG 59.337 66.667 0.00 0.00 0.00 4.00
24 25 2.928396 AAGGACGTGGGGAGGTGG 60.928 66.667 0.00 0.00 0.00 4.61
25 26 3.786866 AAGGACGTGGGGAGGTGGT 62.787 63.158 0.00 0.00 0.00 4.16
26 27 3.703127 GGACGTGGGGAGGTGGTC 61.703 72.222 0.00 0.00 0.00 4.02
27 28 2.920912 GACGTGGGGAGGTGGTCA 60.921 66.667 0.00 0.00 0.00 4.02
28 29 2.446994 ACGTGGGGAGGTGGTCAA 60.447 61.111 0.00 0.00 0.00 3.18
29 30 1.838073 GACGTGGGGAGGTGGTCAAT 61.838 60.000 0.00 0.00 0.00 2.57
30 31 1.078426 CGTGGGGAGGTGGTCAATC 60.078 63.158 0.00 0.00 0.00 2.67
31 32 1.836999 CGTGGGGAGGTGGTCAATCA 61.837 60.000 0.00 0.00 0.00 2.57
32 33 0.404040 GTGGGGAGGTGGTCAATCAA 59.596 55.000 0.00 0.00 0.00 2.57
33 34 0.698238 TGGGGAGGTGGTCAATCAAG 59.302 55.000 0.00 0.00 0.00 3.02
34 35 0.991920 GGGGAGGTGGTCAATCAAGA 59.008 55.000 0.00 0.00 0.00 3.02
35 36 1.065126 GGGGAGGTGGTCAATCAAGAG 60.065 57.143 0.00 0.00 0.00 2.85
36 37 1.909302 GGGAGGTGGTCAATCAAGAGA 59.091 52.381 0.00 0.00 0.00 3.10
37 38 2.305927 GGGAGGTGGTCAATCAAGAGAA 59.694 50.000 0.00 0.00 0.00 2.87
38 39 3.604582 GGAGGTGGTCAATCAAGAGAAG 58.395 50.000 0.00 0.00 0.00 2.85
39 40 3.008485 GGAGGTGGTCAATCAAGAGAAGT 59.992 47.826 0.00 0.00 0.00 3.01
40 41 4.223032 GGAGGTGGTCAATCAAGAGAAGTA 59.777 45.833 0.00 0.00 0.00 2.24
41 42 5.413309 AGGTGGTCAATCAAGAGAAGTAG 57.587 43.478 0.00 0.00 0.00 2.57
42 43 5.087323 AGGTGGTCAATCAAGAGAAGTAGA 58.913 41.667 0.00 0.00 0.00 2.59
43 44 5.544176 AGGTGGTCAATCAAGAGAAGTAGAA 59.456 40.000 0.00 0.00 0.00 2.10
44 45 6.043243 AGGTGGTCAATCAAGAGAAGTAGAAA 59.957 38.462 0.00 0.00 0.00 2.52
45 46 6.370166 GGTGGTCAATCAAGAGAAGTAGAAAG 59.630 42.308 0.00 0.00 0.00 2.62
46 47 5.934625 TGGTCAATCAAGAGAAGTAGAAAGC 59.065 40.000 0.00 0.00 0.00 3.51
47 48 5.352846 GGTCAATCAAGAGAAGTAGAAAGCC 59.647 44.000 0.00 0.00 0.00 4.35
48 49 5.934625 GTCAATCAAGAGAAGTAGAAAGCCA 59.065 40.000 0.00 0.00 0.00 4.75
49 50 6.091986 GTCAATCAAGAGAAGTAGAAAGCCAG 59.908 42.308 0.00 0.00 0.00 4.85
50 51 6.014242 TCAATCAAGAGAAGTAGAAAGCCAGA 60.014 38.462 0.00 0.00 0.00 3.86
51 52 5.808366 TCAAGAGAAGTAGAAAGCCAGAA 57.192 39.130 0.00 0.00 0.00 3.02
52 53 6.174720 TCAAGAGAAGTAGAAAGCCAGAAA 57.825 37.500 0.00 0.00 0.00 2.52
53 54 6.591935 TCAAGAGAAGTAGAAAGCCAGAAAA 58.408 36.000 0.00 0.00 0.00 2.29
54 55 7.054124 TCAAGAGAAGTAGAAAGCCAGAAAAA 58.946 34.615 0.00 0.00 0.00 1.94
55 56 7.721399 TCAAGAGAAGTAGAAAGCCAGAAAAAT 59.279 33.333 0.00 0.00 0.00 1.82
56 57 7.680442 AGAGAAGTAGAAAGCCAGAAAAATC 57.320 36.000 0.00 0.00 0.00 2.17
57 58 6.370166 AGAGAAGTAGAAAGCCAGAAAAATCG 59.630 38.462 0.00 0.00 0.00 3.34
58 59 5.998363 AGAAGTAGAAAGCCAGAAAAATCGT 59.002 36.000 0.00 0.00 0.00 3.73
59 60 5.613358 AGTAGAAAGCCAGAAAAATCGTG 57.387 39.130 0.00 0.00 0.00 4.35
60 61 5.063880 AGTAGAAAGCCAGAAAAATCGTGT 58.936 37.500 0.00 0.00 0.00 4.49
61 62 4.228912 AGAAAGCCAGAAAAATCGTGTG 57.771 40.909 0.00 0.00 0.00 3.82
62 63 3.004734 AGAAAGCCAGAAAAATCGTGTGG 59.995 43.478 0.00 0.00 0.00 4.17
63 64 1.247567 AGCCAGAAAAATCGTGTGGG 58.752 50.000 0.00 0.00 0.00 4.61
64 65 0.243636 GCCAGAAAAATCGTGTGGGG 59.756 55.000 0.00 0.00 0.00 4.96
65 66 1.904287 CCAGAAAAATCGTGTGGGGA 58.096 50.000 0.00 0.00 0.00 4.81
66 67 2.235016 CCAGAAAAATCGTGTGGGGAA 58.765 47.619 0.00 0.00 0.00 3.97
67 68 2.228822 CCAGAAAAATCGTGTGGGGAAG 59.771 50.000 0.00 0.00 0.00 3.46
68 69 1.886542 AGAAAAATCGTGTGGGGAAGC 59.113 47.619 0.00 0.00 0.00 3.86
69 70 0.596082 AAAAATCGTGTGGGGAAGCG 59.404 50.000 0.00 0.00 0.00 4.68
70 71 0.250553 AAAATCGTGTGGGGAAGCGA 60.251 50.000 0.00 0.00 37.76 4.93
71 72 0.035439 AAATCGTGTGGGGAAGCGAT 60.035 50.000 0.00 0.00 44.53 4.58
72 73 0.744414 AATCGTGTGGGGAAGCGATG 60.744 55.000 0.00 0.00 42.27 3.84
73 74 2.593468 ATCGTGTGGGGAAGCGATGG 62.593 60.000 0.00 0.00 41.65 3.51
74 75 2.668632 GTGTGGGGAAGCGATGGA 59.331 61.111 0.00 0.00 0.00 3.41
75 76 1.745489 GTGTGGGGAAGCGATGGAC 60.745 63.158 0.00 0.00 0.00 4.02
76 77 2.220586 TGTGGGGAAGCGATGGACA 61.221 57.895 0.00 0.00 0.00 4.02
77 78 1.450312 GTGGGGAAGCGATGGACAG 60.450 63.158 0.00 0.00 0.00 3.51
78 79 1.612146 TGGGGAAGCGATGGACAGA 60.612 57.895 0.00 0.00 0.00 3.41
79 80 1.198094 TGGGGAAGCGATGGACAGAA 61.198 55.000 0.00 0.00 0.00 3.02
80 81 0.035439 GGGGAAGCGATGGACAGAAA 60.035 55.000 0.00 0.00 0.00 2.52
81 82 1.613255 GGGGAAGCGATGGACAGAAAA 60.613 52.381 0.00 0.00 0.00 2.29
82 83 2.159382 GGGAAGCGATGGACAGAAAAA 58.841 47.619 0.00 0.00 0.00 1.94
101 102 4.357918 AAAATGATGGGAGGAGGTATCG 57.642 45.455 0.00 0.00 0.00 2.92
102 103 3.260269 AATGATGGGAGGAGGTATCGA 57.740 47.619 0.00 0.00 0.00 3.59
103 104 3.481559 ATGATGGGAGGAGGTATCGAT 57.518 47.619 2.16 2.16 0.00 3.59
104 105 4.609866 ATGATGGGAGGAGGTATCGATA 57.390 45.455 0.00 0.00 0.00 2.92
105 106 3.969553 TGATGGGAGGAGGTATCGATAG 58.030 50.000 5.09 0.00 0.00 2.08
106 107 2.217510 TGGGAGGAGGTATCGATAGC 57.782 55.000 23.79 23.79 0.00 2.97
107 108 1.427753 TGGGAGGAGGTATCGATAGCA 59.572 52.381 30.32 10.27 33.40 3.49
108 109 2.043115 TGGGAGGAGGTATCGATAGCAT 59.957 50.000 30.32 18.55 33.40 3.79
109 110 3.268595 TGGGAGGAGGTATCGATAGCATA 59.731 47.826 30.32 10.17 33.40 3.14
110 111 4.264217 TGGGAGGAGGTATCGATAGCATAA 60.264 45.833 30.32 10.51 33.40 1.90
111 112 4.339814 GGGAGGAGGTATCGATAGCATAAG 59.660 50.000 30.32 0.00 33.40 1.73
112 113 4.339814 GGAGGAGGTATCGATAGCATAAGG 59.660 50.000 30.32 0.00 33.40 2.69
113 114 5.194432 GAGGAGGTATCGATAGCATAAGGA 58.806 45.833 30.32 0.00 33.40 3.36
114 115 5.197451 AGGAGGTATCGATAGCATAAGGAG 58.803 45.833 30.32 0.00 33.40 3.69
115 116 4.339814 GGAGGTATCGATAGCATAAGGAGG 59.660 50.000 30.32 0.00 33.40 4.30
116 117 4.936802 AGGTATCGATAGCATAAGGAGGT 58.063 43.478 30.32 8.96 33.40 3.85
117 118 4.707448 AGGTATCGATAGCATAAGGAGGTG 59.293 45.833 30.32 0.00 33.40 4.00
118 119 4.705507 GGTATCGATAGCATAAGGAGGTGA 59.294 45.833 25.68 0.00 0.00 4.02
119 120 5.361285 GGTATCGATAGCATAAGGAGGTGAT 59.639 44.000 25.68 0.00 0.00 3.06
120 121 5.590530 ATCGATAGCATAAGGAGGTGATC 57.409 43.478 0.00 0.00 0.00 2.92
121 122 3.440522 TCGATAGCATAAGGAGGTGATCG 59.559 47.826 0.00 0.00 37.01 3.69
122 123 3.440522 CGATAGCATAAGGAGGTGATCGA 59.559 47.826 0.00 0.00 37.68 3.59
123 124 4.082733 CGATAGCATAAGGAGGTGATCGAA 60.083 45.833 0.00 0.00 37.68 3.71
124 125 3.460857 AGCATAAGGAGGTGATCGAAC 57.539 47.619 0.00 0.00 0.00 3.95
125 126 2.103263 AGCATAAGGAGGTGATCGAACC 59.897 50.000 0.00 0.00 40.85 3.62
126 127 2.158957 GCATAAGGAGGTGATCGAACCA 60.159 50.000 8.93 0.00 43.20 3.67
127 128 3.495100 GCATAAGGAGGTGATCGAACCAT 60.495 47.826 8.93 0.00 43.20 3.55
128 129 2.990066 AAGGAGGTGATCGAACCATC 57.010 50.000 8.93 1.44 43.20 3.51
129 130 1.866015 AGGAGGTGATCGAACCATCA 58.134 50.000 8.93 0.00 43.20 3.07
134 135 0.914551 GTGATCGAACCATCACGACG 59.085 55.000 1.40 0.00 42.48 5.12
135 136 0.524414 TGATCGAACCATCACGACGT 59.476 50.000 0.00 0.00 41.17 4.34
136 137 1.068125 TGATCGAACCATCACGACGTT 60.068 47.619 0.00 0.00 41.17 3.99
137 138 1.990563 GATCGAACCATCACGACGTTT 59.009 47.619 0.00 0.00 41.17 3.60
138 139 1.133407 TCGAACCATCACGACGTTTG 58.867 50.000 0.00 0.00 33.62 2.93
139 140 1.133407 CGAACCATCACGACGTTTGA 58.867 50.000 0.00 3.54 0.00 2.69
140 141 1.724623 CGAACCATCACGACGTTTGAT 59.275 47.619 0.00 7.59 33.81 2.57
141 142 2.156891 CGAACCATCACGACGTTTGATT 59.843 45.455 10.13 0.00 30.98 2.57
142 143 3.720920 CGAACCATCACGACGTTTGATTC 60.721 47.826 10.13 1.12 30.98 2.52
143 144 3.040147 ACCATCACGACGTTTGATTCT 57.960 42.857 10.13 0.00 30.98 2.40
144 145 3.399330 ACCATCACGACGTTTGATTCTT 58.601 40.909 10.13 0.00 30.98 2.52
145 146 3.432252 ACCATCACGACGTTTGATTCTTC 59.568 43.478 10.13 0.00 30.98 2.87
146 147 3.679980 CCATCACGACGTTTGATTCTTCT 59.320 43.478 10.13 0.00 30.98 2.85
147 148 4.152402 CCATCACGACGTTTGATTCTTCTT 59.848 41.667 10.13 0.00 30.98 2.52
148 149 5.334105 CCATCACGACGTTTGATTCTTCTTT 60.334 40.000 10.13 0.00 30.98 2.52
149 150 6.128661 CCATCACGACGTTTGATTCTTCTTTA 60.129 38.462 10.13 0.00 30.98 1.85
150 151 6.831727 TCACGACGTTTGATTCTTCTTTAA 57.168 33.333 0.00 0.00 0.00 1.52
151 152 7.416154 TCACGACGTTTGATTCTTCTTTAAT 57.584 32.000 0.00 0.00 0.00 1.40
152 153 8.523523 TCACGACGTTTGATTCTTCTTTAATA 57.476 30.769 0.00 0.00 0.00 0.98
153 154 8.644619 TCACGACGTTTGATTCTTCTTTAATAG 58.355 33.333 0.00 0.00 0.00 1.73
154 155 8.433126 CACGACGTTTGATTCTTCTTTAATAGT 58.567 33.333 0.00 0.00 0.00 2.12
155 156 9.630098 ACGACGTTTGATTCTTCTTTAATAGTA 57.370 29.630 0.00 0.00 0.00 1.82
177 178 8.561738 AGTAGAAATTTGTATCATCAAACGGT 57.438 30.769 0.00 0.00 39.58 4.83
178 179 9.010029 AGTAGAAATTTGTATCATCAAACGGTT 57.990 29.630 0.00 0.00 39.58 4.44
179 180 9.061610 GTAGAAATTTGTATCATCAAACGGTTG 57.938 33.333 6.93 6.93 39.58 3.77
181 182 7.807907 AGAAATTTGTATCATCAAACGGTTGAC 59.192 33.333 20.01 6.52 46.40 3.18
182 183 4.655440 TTGTATCATCAAACGGTTGACG 57.345 40.909 20.01 11.24 46.40 4.35
191 192 3.561429 CGGTTGACGTGGATGTGG 58.439 61.111 0.00 0.00 37.93 4.17
192 193 1.301401 CGGTTGACGTGGATGTGGT 60.301 57.895 0.00 0.00 37.93 4.16
193 194 0.882927 CGGTTGACGTGGATGTGGTT 60.883 55.000 0.00 0.00 37.93 3.67
194 195 1.314730 GGTTGACGTGGATGTGGTTT 58.685 50.000 0.00 0.00 0.00 3.27
195 196 1.001815 GGTTGACGTGGATGTGGTTTG 60.002 52.381 0.00 0.00 0.00 2.93
196 197 0.665835 TTGACGTGGATGTGGTTTGC 59.334 50.000 0.00 0.00 0.00 3.68
197 198 0.464554 TGACGTGGATGTGGTTTGCA 60.465 50.000 0.00 0.00 0.00 4.08
198 199 0.881118 GACGTGGATGTGGTTTGCAT 59.119 50.000 0.00 0.00 0.00 3.96
199 200 0.597568 ACGTGGATGTGGTTTGCATG 59.402 50.000 0.00 0.00 0.00 4.06
200 201 0.109179 CGTGGATGTGGTTTGCATGG 60.109 55.000 0.00 0.00 0.00 3.66
201 202 1.255882 GTGGATGTGGTTTGCATGGA 58.744 50.000 0.00 0.00 0.00 3.41
202 203 1.826720 GTGGATGTGGTTTGCATGGAT 59.173 47.619 0.00 0.00 0.00 3.41
203 204 2.234414 GTGGATGTGGTTTGCATGGATT 59.766 45.455 0.00 0.00 0.00 3.01
204 205 2.905085 TGGATGTGGTTTGCATGGATTT 59.095 40.909 0.00 0.00 0.00 2.17
205 206 3.264104 GGATGTGGTTTGCATGGATTTG 58.736 45.455 0.00 0.00 0.00 2.32
206 207 3.055963 GGATGTGGTTTGCATGGATTTGA 60.056 43.478 0.00 0.00 0.00 2.69
207 208 4.563168 GGATGTGGTTTGCATGGATTTGAA 60.563 41.667 0.00 0.00 0.00 2.69
208 209 3.992643 TGTGGTTTGCATGGATTTGAAG 58.007 40.909 0.00 0.00 0.00 3.02
209 210 3.640498 TGTGGTTTGCATGGATTTGAAGA 59.360 39.130 0.00 0.00 0.00 2.87
210 211 4.283978 TGTGGTTTGCATGGATTTGAAGAT 59.716 37.500 0.00 0.00 0.00 2.40
211 212 5.221682 TGTGGTTTGCATGGATTTGAAGATT 60.222 36.000 0.00 0.00 0.00 2.40
212 213 5.702209 GTGGTTTGCATGGATTTGAAGATTT 59.298 36.000 0.00 0.00 0.00 2.17
213 214 5.701750 TGGTTTGCATGGATTTGAAGATTTG 59.298 36.000 0.00 0.00 0.00 2.32
214 215 5.933463 GGTTTGCATGGATTTGAAGATTTGA 59.067 36.000 0.00 0.00 0.00 2.69
215 216 6.427547 GGTTTGCATGGATTTGAAGATTTGAA 59.572 34.615 0.00 0.00 0.00 2.69
216 217 7.041235 GGTTTGCATGGATTTGAAGATTTGAAA 60.041 33.333 0.00 0.00 0.00 2.69
217 218 7.661127 TTGCATGGATTTGAAGATTTGAAAG 57.339 32.000 0.00 0.00 0.00 2.62
218 219 6.761312 TGCATGGATTTGAAGATTTGAAAGT 58.239 32.000 0.00 0.00 0.00 2.66
219 220 7.894708 TGCATGGATTTGAAGATTTGAAAGTA 58.105 30.769 0.00 0.00 0.00 2.24
220 221 8.366401 TGCATGGATTTGAAGATTTGAAAGTAA 58.634 29.630 0.00 0.00 0.00 2.24
221 222 8.866956 GCATGGATTTGAAGATTTGAAAGTAAG 58.133 33.333 0.00 0.00 0.00 2.34
222 223 9.362539 CATGGATTTGAAGATTTGAAAGTAAGG 57.637 33.333 0.00 0.00 0.00 2.69
223 224 7.895759 TGGATTTGAAGATTTGAAAGTAAGGG 58.104 34.615 0.00 0.00 0.00 3.95
224 225 7.728083 TGGATTTGAAGATTTGAAAGTAAGGGA 59.272 33.333 0.00 0.00 0.00 4.20
225 226 8.029522 GGATTTGAAGATTTGAAAGTAAGGGAC 58.970 37.037 0.00 0.00 0.00 4.46
226 227 7.889873 TTTGAAGATTTGAAAGTAAGGGACA 57.110 32.000 0.00 0.00 0.00 4.02
227 228 8.477419 TTTGAAGATTTGAAAGTAAGGGACAT 57.523 30.769 0.00 0.00 0.00 3.06
228 229 7.452880 TGAAGATTTGAAAGTAAGGGACATG 57.547 36.000 0.00 0.00 0.00 3.21
229 230 6.434028 TGAAGATTTGAAAGTAAGGGACATGG 59.566 38.462 0.00 0.00 0.00 3.66
230 231 5.892348 AGATTTGAAAGTAAGGGACATGGT 58.108 37.500 0.00 0.00 0.00 3.55
231 232 6.314917 AGATTTGAAAGTAAGGGACATGGTT 58.685 36.000 0.00 0.00 0.00 3.67
232 233 5.782893 TTTGAAAGTAAGGGACATGGTTG 57.217 39.130 0.00 0.00 0.00 3.77
233 234 3.153919 TGAAAGTAAGGGACATGGTTGC 58.846 45.455 0.00 0.00 0.00 4.17
234 235 2.969821 AAGTAAGGGACATGGTTGCA 57.030 45.000 0.00 0.00 0.00 4.08
235 236 2.200373 AGTAAGGGACATGGTTGCAC 57.800 50.000 0.00 0.00 0.00 4.57
236 237 0.802494 GTAAGGGACATGGTTGCACG 59.198 55.000 0.00 0.00 0.00 5.34
237 238 0.322098 TAAGGGACATGGTTGCACGG 60.322 55.000 0.00 0.00 0.00 4.94
238 239 2.033448 GGGACATGGTTGCACGGA 59.967 61.111 0.00 0.00 0.00 4.69
239 240 2.332654 GGGACATGGTTGCACGGAC 61.333 63.158 0.00 0.00 0.00 4.79
240 241 2.677003 GGACATGGTTGCACGGACG 61.677 63.158 0.00 0.00 0.00 4.79
241 242 1.666553 GACATGGTTGCACGGACGA 60.667 57.895 0.00 0.00 0.00 4.20
242 243 1.225376 GACATGGTTGCACGGACGAA 61.225 55.000 0.00 0.00 0.00 3.85
243 244 1.206578 CATGGTTGCACGGACGAAC 59.793 57.895 0.00 0.00 0.00 3.95
244 245 1.227704 ATGGTTGCACGGACGAACA 60.228 52.632 0.00 0.00 0.00 3.18
245 246 0.605319 ATGGTTGCACGGACGAACAT 60.605 50.000 0.00 0.00 0.00 2.71
246 247 0.816018 TGGTTGCACGGACGAACATT 60.816 50.000 0.00 0.00 0.00 2.71
247 248 0.309612 GGTTGCACGGACGAACATTT 59.690 50.000 0.00 0.00 0.00 2.32
248 249 1.532007 GGTTGCACGGACGAACATTTA 59.468 47.619 0.00 0.00 0.00 1.40
249 250 2.031857 GGTTGCACGGACGAACATTTAA 60.032 45.455 0.00 0.00 0.00 1.52
250 251 3.223157 GTTGCACGGACGAACATTTAAG 58.777 45.455 0.00 0.00 0.00 1.85
251 252 1.801771 TGCACGGACGAACATTTAAGG 59.198 47.619 0.00 0.00 0.00 2.69
252 253 1.129811 GCACGGACGAACATTTAAGGG 59.870 52.381 0.00 0.00 0.00 3.95
253 254 1.735571 CACGGACGAACATTTAAGGGG 59.264 52.381 0.00 0.00 0.00 4.79
254 255 1.339342 ACGGACGAACATTTAAGGGGG 60.339 52.381 0.00 0.00 0.00 5.40
255 256 1.065998 CGGACGAACATTTAAGGGGGA 60.066 52.381 0.00 0.00 0.00 4.81
256 257 2.616001 CGGACGAACATTTAAGGGGGAA 60.616 50.000 0.00 0.00 0.00 3.97
257 258 2.751259 GGACGAACATTTAAGGGGGAAC 59.249 50.000 0.00 0.00 0.00 3.62
258 259 2.417586 GACGAACATTTAAGGGGGAACG 59.582 50.000 0.00 0.00 0.00 3.95
259 260 1.131693 CGAACATTTAAGGGGGAACGC 59.868 52.381 0.00 0.00 45.13 4.84
275 276 3.874873 GCTGTCTGCGCACATACA 58.125 55.556 5.66 10.70 32.53 2.29
278 279 3.423848 TGTCTGCGCACATACAGAG 57.576 52.632 5.66 0.00 43.30 3.35
279 280 0.108662 TGTCTGCGCACATACAGAGG 60.109 55.000 5.66 0.00 43.30 3.69
280 281 0.807667 GTCTGCGCACATACAGAGGG 60.808 60.000 5.66 0.00 43.30 4.30
281 282 1.522355 CTGCGCACATACAGAGGGG 60.522 63.158 5.66 0.00 35.90 4.79
282 283 2.897350 GCGCACATACAGAGGGGC 60.897 66.667 0.30 0.00 0.00 5.80
283 284 2.586079 CGCACATACAGAGGGGCG 60.586 66.667 0.00 0.00 38.45 6.13
284 285 2.203070 GCACATACAGAGGGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
285 286 2.731571 GCACATACAGAGGGGCGGA 61.732 63.158 0.00 0.00 0.00 5.54
286 287 2.044806 GCACATACAGAGGGGCGGAT 62.045 60.000 0.00 0.00 0.00 4.18
287 288 0.469917 CACATACAGAGGGGCGGATT 59.530 55.000 0.00 0.00 0.00 3.01
288 289 1.134098 CACATACAGAGGGGCGGATTT 60.134 52.381 0.00 0.00 0.00 2.17
289 290 1.134098 ACATACAGAGGGGCGGATTTG 60.134 52.381 0.00 0.00 0.00 2.32
290 291 0.179018 ATACAGAGGGGCGGATTTGC 60.179 55.000 0.00 0.00 0.00 3.68
299 300 3.531073 GCGGATTTGCCCAATGTTT 57.469 47.368 0.00 0.00 0.00 2.83
300 301 1.077915 GCGGATTTGCCCAATGTTTG 58.922 50.000 0.00 0.00 0.00 2.93
301 302 1.607767 GCGGATTTGCCCAATGTTTGT 60.608 47.619 0.00 0.00 0.00 2.83
302 303 2.353208 GCGGATTTGCCCAATGTTTGTA 60.353 45.455 0.00 0.00 0.00 2.41
303 304 3.510719 CGGATTTGCCCAATGTTTGTAG 58.489 45.455 0.00 0.00 0.00 2.74
304 305 3.192422 CGGATTTGCCCAATGTTTGTAGA 59.808 43.478 0.00 0.00 0.00 2.59
324 325 5.382618 AGATGCTCTTACAAGCCAAAAAG 57.617 39.130 0.00 0.00 41.77 2.27
326 327 5.302823 AGATGCTCTTACAAGCCAAAAAGTT 59.697 36.000 0.00 0.00 41.77 2.66
327 328 4.932146 TGCTCTTACAAGCCAAAAAGTTC 58.068 39.130 0.00 0.00 41.77 3.01
330 331 4.932146 TCTTACAAGCCAAAAAGTTCTGC 58.068 39.130 0.00 0.00 0.00 4.26
337 338 5.337578 AGCCAAAAAGTTCTGCTGTAAAA 57.662 34.783 0.00 0.00 0.00 1.52
338 339 5.729510 AGCCAAAAAGTTCTGCTGTAAAAA 58.270 33.333 0.00 0.00 0.00 1.94
339 340 6.348498 AGCCAAAAAGTTCTGCTGTAAAAAT 58.652 32.000 0.00 0.00 0.00 1.82
340 341 6.479990 AGCCAAAAAGTTCTGCTGTAAAAATC 59.520 34.615 0.00 0.00 0.00 2.17
341 342 6.257630 GCCAAAAAGTTCTGCTGTAAAAATCA 59.742 34.615 0.00 0.00 0.00 2.57
342 343 7.517259 GCCAAAAAGTTCTGCTGTAAAAATCAG 60.517 37.037 0.00 0.00 36.18 2.90
343 344 7.706179 CCAAAAAGTTCTGCTGTAAAAATCAGA 59.294 33.333 0.00 0.00 35.20 3.27
344 345 9.252962 CAAAAAGTTCTGCTGTAAAAATCAGAT 57.747 29.630 0.00 0.00 35.74 2.90
345 346 8.807667 AAAAGTTCTGCTGTAAAAATCAGATG 57.192 30.769 0.00 0.00 35.74 2.90
346 347 7.750229 AAGTTCTGCTGTAAAAATCAGATGA 57.250 32.000 0.00 0.00 35.74 2.92
348 349 7.983307 AGTTCTGCTGTAAAAATCAGATGATC 58.017 34.615 0.00 0.00 35.74 2.92
363 364 6.247676 TCAGATGATCTGGATTTTGGTTTGA 58.752 36.000 21.27 0.00 44.39 2.69
364 365 6.720748 TCAGATGATCTGGATTTTGGTTTGAA 59.279 34.615 21.27 0.00 44.39 2.69
381 382 5.393461 GGTTTGAAGTTAGATTGGATGGCTG 60.393 44.000 0.00 0.00 0.00 4.85
393 394 3.654021 TGGCTGTGGAGACAACCA 58.346 55.556 0.00 0.00 44.52 3.67
447 448 1.623311 CCATATGGGTCATGCCTCGTA 59.377 52.381 14.52 0.00 37.43 3.43
471 484 1.764134 ACGGAATTTAGGCCCGACATA 59.236 47.619 9.30 0.00 45.58 2.29
481 494 4.602259 CCGACATATGCCCGGCGT 62.602 66.667 19.78 9.62 36.62 5.68
487 500 4.805231 TATGCCCGGCGTGACACG 62.805 66.667 23.43 23.43 45.88 4.49
501 514 3.561503 GTGACACGCCATTAAAAAGGTC 58.438 45.455 0.00 0.00 0.00 3.85
504 517 1.135517 CACGCCATTAAAAAGGTCGGG 60.136 52.381 0.00 0.00 0.00 5.14
508 521 2.442413 CCATTAAAAAGGTCGGGCTGA 58.558 47.619 0.00 0.00 0.00 4.26
526 539 4.157120 CCTTCGGCCTACCACGGG 62.157 72.222 0.00 0.00 34.57 5.28
529 542 3.892104 TTCGGCCTACCACGGGACT 62.892 63.158 0.00 0.00 34.57 3.85
541 554 0.757188 ACGGGACTAGGCAGATCCTG 60.757 60.000 0.00 0.29 46.98 3.86
546 559 3.034635 GGACTAGGCAGATCCTGAAAGA 58.965 50.000 0.00 0.00 46.98 2.52
573 586 2.419011 TAAGGCCGGGCACAACACAT 62.419 55.000 31.59 3.02 0.00 3.21
581 594 3.049206 CGGGCACAACACATACTTTTTG 58.951 45.455 0.00 0.00 0.00 2.44
750 808 5.524281 TGAATTTTCTAAAAACAAACGGCCC 59.476 36.000 0.00 0.00 0.00 5.80
769 827 3.412386 CCCAGAAGACCGAGAAACAATT 58.588 45.455 0.00 0.00 0.00 2.32
1005 1089 3.943137 AACCTCCCCTCCGATGCCA 62.943 63.158 0.00 0.00 0.00 4.92
1039 1123 3.701604 CTTCGCCGTCTTCTCCCCG 62.702 68.421 0.00 0.00 0.00 5.73
1554 2017 1.144057 CCGATTCTCCCCCAAGTCG 59.856 63.158 0.00 0.00 0.00 4.18
1635 2098 1.410004 CCGGCTACCTCTGGTTCATA 58.590 55.000 0.00 0.00 37.09 2.15
1680 2143 1.138036 CGCCTTATCGTCGGACACA 59.862 57.895 9.10 0.00 0.00 3.72
1731 2194 2.289382 TGATCGCAAGGTGCTGTCTTTA 60.289 45.455 0.00 0.00 42.25 1.85
1743 2206 2.866460 GCTGTCTTTACTCAAGTCGGCA 60.866 50.000 7.50 0.00 46.51 5.69
1818 2281 1.486726 GGGCTAAGCAAGAAGAGGCTA 59.513 52.381 0.00 0.00 40.01 3.93
1887 2350 3.334054 GAGCCCAAGCCAGACCCT 61.334 66.667 0.00 0.00 41.25 4.34
1977 2440 4.041075 TGCGGGATAATTAGTCCATTGCTA 59.959 41.667 12.91 0.00 37.49 3.49
2118 2581 1.214175 TCTTGGCCTGAGTTTGTTCCA 59.786 47.619 3.32 0.00 0.00 3.53
2175 2638 4.774124 TCCTTAGATTTGGCTCTCATGTG 58.226 43.478 0.00 0.00 0.00 3.21
2277 2740 1.266178 TGAGGCCAGAGAATTCGTCA 58.734 50.000 5.01 0.00 0.00 4.35
2361 2824 3.646162 TCATCTACCCAACCTTGCGATAT 59.354 43.478 0.00 0.00 0.00 1.63
2376 3731 1.629043 GATATACCGCCAGTGGAGGA 58.371 55.000 35.71 20.32 45.77 3.71
2394 3749 4.453819 GGAGGAAACATTGTGAGTGAGAAG 59.546 45.833 0.00 0.00 0.00 2.85
2658 4013 3.861886 GCTCTTTGGCAAAGCTTTATGCA 60.862 43.478 30.40 13.08 44.32 3.96
2892 4247 2.749076 TCACCATGAGCTTGTATTGCAC 59.251 45.455 0.00 0.00 0.00 4.57
3226 4584 5.351465 ACAAATAGTCCTAATTCTGTGTGCG 59.649 40.000 0.00 0.00 0.00 5.34
3233 4591 3.560068 CCTAATTCTGTGTGCGGAATACC 59.440 47.826 2.56 0.00 46.76 2.73
3239 4597 1.003696 TGTGTGCGGAATACCAATGGA 59.996 47.619 6.16 0.00 35.59 3.41
3240 4598 1.400494 GTGTGCGGAATACCAATGGAC 59.600 52.381 6.16 0.00 35.59 4.02
3248 4606 4.388773 CGGAATACCAATGGACGATGTATG 59.611 45.833 6.16 0.00 35.59 2.39
3259 4617 3.314635 GGACGATGTATGAACGACCTACT 59.685 47.826 0.00 0.00 38.37 2.57
3269 4627 6.963083 ATGAACGACCTACTAGCTAAAGAT 57.037 37.500 0.00 0.00 0.00 2.40
3276 4634 6.913673 CGACCTACTAGCTAAAGATCAAGAAC 59.086 42.308 0.00 0.00 0.00 3.01
3278 4636 8.002984 ACCTACTAGCTAAAGATCAAGAACTC 57.997 38.462 0.00 0.00 0.00 3.01
3301 4666 4.566360 CGGGCAAATATTTGGATGTTCAAC 59.434 41.667 25.61 8.70 38.57 3.18
3338 4703 9.465199 TGAACATGTACTACAATACTACACCTA 57.535 33.333 0.00 0.00 0.00 3.08
3451 4816 7.129622 TGTTCTTGCAAACTTATGTTTCTACG 58.870 34.615 0.00 0.00 43.75 3.51
3468 4833 8.575589 TGTTTCTACGGTAGTAAGAATGTGTTA 58.424 33.333 14.45 0.00 31.59 2.41
3490 4855 9.687210 TGTTATTTGTAGTTACTGTGACACTAG 57.313 33.333 7.20 5.43 0.00 2.57
3502 4867 1.419762 TGACACTAGCAAAGCTGGGAA 59.580 47.619 7.28 0.00 41.48 3.97
3655 5031 9.764363 CATATACTTTTTGTGCTCATAGGTAGA 57.236 33.333 0.00 0.00 0.00 2.59
3664 5040 6.524734 TGTGCTCATAGGTAGACAATAATGG 58.475 40.000 0.00 0.00 0.00 3.16
3672 5048 5.538877 AGGTAGACAATAATGGGAGGAAGA 58.461 41.667 0.00 0.00 0.00 2.87
3673 5049 5.604650 AGGTAGACAATAATGGGAGGAAGAG 59.395 44.000 0.00 0.00 0.00 2.85
3674 5050 4.429854 AGACAATAATGGGAGGAAGAGC 57.570 45.455 0.00 0.00 0.00 4.09
3686 5062 3.573967 GGAGGAAGAGCCATTGTTTTTGA 59.426 43.478 0.00 0.00 40.02 2.69
3697 5073 5.391843 GCCATTGTTTTTGAAAGTTTGCTGT 60.392 36.000 0.00 0.00 0.00 4.40
3709 5085 3.848726 AGTTTGCTGTTGTTTGGAAGTG 58.151 40.909 0.00 0.00 0.00 3.16
3713 5089 1.668751 GCTGTTGTTTGGAAGTGACGA 59.331 47.619 0.00 0.00 0.00 4.20
3730 5106 9.862371 GAAGTGACGATGGATAGTTTCATATAT 57.138 33.333 0.00 0.00 0.00 0.86
3734 5110 8.802267 TGACGATGGATAGTTTCATATATGTGA 58.198 33.333 12.42 0.00 0.00 3.58
3737 5113 9.591792 CGATGGATAGTTTCATATATGTGATGT 57.408 33.333 12.42 0.00 0.00 3.06
3773 5149 5.707298 TCTCAAGGCTTGTTCTTAGGATTTG 59.293 40.000 25.39 0.00 0.00 2.32
3774 5150 4.766891 TCAAGGCTTGTTCTTAGGATTTGG 59.233 41.667 25.39 0.00 0.00 3.28
3775 5151 4.657814 AGGCTTGTTCTTAGGATTTGGA 57.342 40.909 0.00 0.00 0.00 3.53
3805 5183 7.510685 ACTGATAAAGAGTATAAGCTCATGGGA 59.489 37.037 0.00 0.00 37.94 4.37
3810 5188 8.829373 AAAGAGTATAAGCTCATGGGAAATTT 57.171 30.769 0.00 0.00 37.94 1.82
3817 5195 4.559153 AGCTCATGGGAAATTTTGTTTCG 58.441 39.130 0.00 0.00 0.00 3.46
3820 5198 5.107491 GCTCATGGGAAATTTTGTTTCGTTC 60.107 40.000 0.00 0.00 0.00 3.95
3867 5245 3.243839 GCTTTTTCTGTTGCAGGATTCCA 60.244 43.478 5.29 0.00 31.51 3.53
3879 5257 3.444742 GCAGGATTCCATGTGACATTCAA 59.555 43.478 5.29 0.00 0.00 2.69
3975 5360 9.771140 ATATAAAGAAATATCTACTCCCTCCGT 57.229 33.333 0.00 0.00 33.77 4.69
3976 5361 6.408107 AAAGAAATATCTACTCCCTCCGTC 57.592 41.667 0.00 0.00 33.77 4.79
3977 5362 4.409187 AGAAATATCTACTCCCTCCGTCC 58.591 47.826 0.00 0.00 32.88 4.79
3978 5363 2.903375 ATATCTACTCCCTCCGTCCC 57.097 55.000 0.00 0.00 0.00 4.46
3979 5364 1.526315 TATCTACTCCCTCCGTCCCA 58.474 55.000 0.00 0.00 0.00 4.37
3980 5365 0.106116 ATCTACTCCCTCCGTCCCAC 60.106 60.000 0.00 0.00 0.00 4.61
3981 5366 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
3982 5367 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
3983 5368 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
3984 5369 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
3985 5370 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
3986 5371 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
3987 5372 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
3988 5373 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
3989 5374 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3990 5375 3.583086 CCCTCCGTCCCACAATATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
3991 5376 4.322801 CCCTCCGTCCCACAATATAAGATC 60.323 50.000 0.00 0.00 0.00 2.75
3992 5377 4.486090 CTCCGTCCCACAATATAAGATCG 58.514 47.826 0.00 0.00 0.00 3.69
3993 5378 3.893200 TCCGTCCCACAATATAAGATCGT 59.107 43.478 0.00 0.00 0.00 3.73
3994 5379 4.342951 TCCGTCCCACAATATAAGATCGTT 59.657 41.667 0.00 0.00 0.00 3.85
3995 5380 5.054477 CCGTCCCACAATATAAGATCGTTT 58.946 41.667 0.00 0.00 0.00 3.60
3996 5381 5.526111 CCGTCCCACAATATAAGATCGTTTT 59.474 40.000 0.00 0.00 0.00 2.43
3997 5382 6.037830 CCGTCCCACAATATAAGATCGTTTTT 59.962 38.462 0.00 0.00 0.00 1.94
3998 5383 7.123830 CGTCCCACAATATAAGATCGTTTTTC 58.876 38.462 0.00 0.00 0.00 2.29
3999 5384 7.201574 CGTCCCACAATATAAGATCGTTTTTCA 60.202 37.037 0.00 0.00 0.00 2.69
4000 5385 8.455682 GTCCCACAATATAAGATCGTTTTTCAA 58.544 33.333 0.00 0.00 0.00 2.69
4001 5386 8.673711 TCCCACAATATAAGATCGTTTTTCAAG 58.326 33.333 0.00 0.00 0.00 3.02
4002 5387 7.432252 CCCACAATATAAGATCGTTTTTCAAGC 59.568 37.037 0.00 0.00 0.00 4.01
4003 5388 8.184192 CCACAATATAAGATCGTTTTTCAAGCT 58.816 33.333 0.00 0.00 0.00 3.74
4011 5396 7.907214 AGATCGTTTTTCAAGCTATGTTAGT 57.093 32.000 0.00 0.00 0.00 2.24
4012 5397 8.324163 AGATCGTTTTTCAAGCTATGTTAGTT 57.676 30.769 0.00 0.00 0.00 2.24
4013 5398 8.784043 AGATCGTTTTTCAAGCTATGTTAGTTT 58.216 29.630 0.00 0.00 0.00 2.66
4014 5399 8.728088 ATCGTTTTTCAAGCTATGTTAGTTTG 57.272 30.769 5.15 5.15 45.01 2.93
4023 5408 8.728088 CAAGCTATGTTAGTTTGAAAAACGAT 57.272 30.769 5.49 0.00 46.07 3.73
4024 5409 8.840867 CAAGCTATGTTAGTTTGAAAAACGATC 58.159 33.333 5.49 0.00 46.07 3.69
4025 5410 8.324163 AGCTATGTTAGTTTGAAAAACGATCT 57.676 30.769 0.00 0.00 0.00 2.75
4026 5411 8.784043 AGCTATGTTAGTTTGAAAAACGATCTT 58.216 29.630 0.00 0.00 0.00 2.40
4034 5419 8.950403 AGTTTGAAAAACGATCTTATACAAGC 57.050 30.769 0.00 0.00 0.00 4.01
4035 5420 8.784043 AGTTTGAAAAACGATCTTATACAAGCT 58.216 29.630 0.00 0.00 0.00 3.74
4039 5424 9.378551 TGAAAAACGATCTTATACAAGCTATGT 57.621 29.630 6.74 6.74 46.36 2.29
4053 5438 7.908193 ACAAGCTATGTTAGTTTGAAAAACG 57.092 32.000 15.22 0.00 46.07 3.60
4054 5439 7.699566 ACAAGCTATGTTAGTTTGAAAAACGA 58.300 30.769 15.22 0.00 46.07 3.85
4055 5440 8.349983 ACAAGCTATGTTAGTTTGAAAAACGAT 58.650 29.630 15.22 0.00 46.07 3.73
4056 5441 8.840867 CAAGCTATGTTAGTTTGAAAAACGATC 58.159 33.333 5.49 0.00 46.07 3.69
4057 5442 8.324163 AGCTATGTTAGTTTGAAAAACGATCT 57.676 30.769 0.00 0.00 0.00 2.75
4058 5443 8.784043 AGCTATGTTAGTTTGAAAAACGATCTT 58.216 29.630 0.00 0.00 0.00 2.40
4067 5452 9.840427 AGTTTGAAAAACGATCTTATATTGTGG 57.160 29.630 0.00 0.00 0.00 4.17
4068 5453 9.072294 GTTTGAAAAACGATCTTATATTGTGGG 57.928 33.333 0.00 0.00 0.00 4.61
4069 5454 8.568676 TTGAAAAACGATCTTATATTGTGGGA 57.431 30.769 0.00 0.00 0.00 4.37
4070 5455 7.981142 TGAAAAACGATCTTATATTGTGGGAC 58.019 34.615 0.00 0.00 0.00 4.46
4071 5456 6.598753 AAAACGATCTTATATTGTGGGACG 57.401 37.500 0.00 0.00 0.00 4.79
4072 5457 4.252971 ACGATCTTATATTGTGGGACGG 57.747 45.455 0.00 0.00 0.00 4.79
4073 5458 3.893200 ACGATCTTATATTGTGGGACGGA 59.107 43.478 0.00 0.00 0.00 4.69
4074 5459 4.022242 ACGATCTTATATTGTGGGACGGAG 60.022 45.833 0.00 0.00 0.00 4.63
4075 5460 4.618460 CGATCTTATATTGTGGGACGGAGG 60.618 50.000 0.00 0.00 0.00 4.30
4076 5461 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4077 5462 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4078 5463 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4079 5464 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
4080 5465 1.553690 ATTGTGGGACGGAGGGAGTG 61.554 60.000 0.00 0.00 0.00 3.51
4081 5466 2.283676 GTGGGACGGAGGGAGTGA 60.284 66.667 0.00 0.00 0.00 3.41
4082 5467 1.686110 GTGGGACGGAGGGAGTGAT 60.686 63.158 0.00 0.00 0.00 3.06
4083 5468 1.080354 TGGGACGGAGGGAGTGATT 59.920 57.895 0.00 0.00 0.00 2.57
4084 5469 0.337082 TGGGACGGAGGGAGTGATTA 59.663 55.000 0.00 0.00 0.00 1.75
4085 5470 1.273381 TGGGACGGAGGGAGTGATTAA 60.273 52.381 0.00 0.00 0.00 1.40
4086 5471 1.413077 GGGACGGAGGGAGTGATTAAG 59.587 57.143 0.00 0.00 0.00 1.85
4087 5472 2.385803 GGACGGAGGGAGTGATTAAGA 58.614 52.381 0.00 0.00 0.00 2.10
4088 5473 2.764572 GGACGGAGGGAGTGATTAAGAA 59.235 50.000 0.00 0.00 0.00 2.52
4089 5474 3.430513 GGACGGAGGGAGTGATTAAGAAC 60.431 52.174 0.00 0.00 0.00 3.01
4090 5475 3.170717 ACGGAGGGAGTGATTAAGAACA 58.829 45.455 0.00 0.00 0.00 3.18
4091 5476 3.775316 ACGGAGGGAGTGATTAAGAACAT 59.225 43.478 0.00 0.00 0.00 2.71
4092 5477 4.960469 ACGGAGGGAGTGATTAAGAACATA 59.040 41.667 0.00 0.00 0.00 2.29
4093 5478 5.602978 ACGGAGGGAGTGATTAAGAACATAT 59.397 40.000 0.00 0.00 0.00 1.78
4094 5479 6.781014 ACGGAGGGAGTGATTAAGAACATATA 59.219 38.462 0.00 0.00 0.00 0.86
4095 5480 7.039644 ACGGAGGGAGTGATTAAGAACATATAG 60.040 40.741 0.00 0.00 0.00 1.31
4096 5481 7.039644 CGGAGGGAGTGATTAAGAACATATAGT 60.040 40.741 0.00 0.00 0.00 2.12
4097 5482 8.308207 GGAGGGAGTGATTAAGAACATATAGTC 58.692 40.741 0.00 0.00 0.00 2.59
4098 5483 8.783660 AGGGAGTGATTAAGAACATATAGTCA 57.216 34.615 0.00 0.00 0.00 3.41
4099 5484 9.386122 AGGGAGTGATTAAGAACATATAGTCAT 57.614 33.333 0.00 0.00 0.00 3.06
4100 5485 9.646427 GGGAGTGATTAAGAACATATAGTCATC 57.354 37.037 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.606519 CCCACGTCCTTCCTCCCA 60.607 66.667 0.00 0.00 0.00 4.37
1 2 3.400054 CCCCACGTCCTTCCTCCC 61.400 72.222 0.00 0.00 0.00 4.30
2 3 2.284405 TCCCCACGTCCTTCCTCC 60.284 66.667 0.00 0.00 0.00 4.30
5 6 2.606826 ACCTCCCCACGTCCTTCC 60.607 66.667 0.00 0.00 0.00 3.46
6 7 2.663196 CACCTCCCCACGTCCTTC 59.337 66.667 0.00 0.00 0.00 3.46
7 8 2.928396 CCACCTCCCCACGTCCTT 60.928 66.667 0.00 0.00 0.00 3.36
8 9 4.250170 ACCACCTCCCCACGTCCT 62.250 66.667 0.00 0.00 0.00 3.85
9 10 3.703127 GACCACCTCCCCACGTCC 61.703 72.222 0.00 0.00 0.00 4.79
10 11 1.838073 ATTGACCACCTCCCCACGTC 61.838 60.000 0.00 0.00 0.00 4.34
11 12 1.838073 GATTGACCACCTCCCCACGT 61.838 60.000 0.00 0.00 0.00 4.49
12 13 1.078426 GATTGACCACCTCCCCACG 60.078 63.158 0.00 0.00 0.00 4.94
13 14 0.404040 TTGATTGACCACCTCCCCAC 59.596 55.000 0.00 0.00 0.00 4.61
14 15 0.698238 CTTGATTGACCACCTCCCCA 59.302 55.000 0.00 0.00 0.00 4.96
15 16 0.991920 TCTTGATTGACCACCTCCCC 59.008 55.000 0.00 0.00 0.00 4.81
16 17 1.909302 TCTCTTGATTGACCACCTCCC 59.091 52.381 0.00 0.00 0.00 4.30
17 18 3.008485 ACTTCTCTTGATTGACCACCTCC 59.992 47.826 0.00 0.00 0.00 4.30
18 19 4.278975 ACTTCTCTTGATTGACCACCTC 57.721 45.455 0.00 0.00 0.00 3.85
19 20 5.087323 TCTACTTCTCTTGATTGACCACCT 58.913 41.667 0.00 0.00 0.00 4.00
20 21 5.407407 TCTACTTCTCTTGATTGACCACC 57.593 43.478 0.00 0.00 0.00 4.61
21 22 6.128418 GCTTTCTACTTCTCTTGATTGACCAC 60.128 42.308 0.00 0.00 0.00 4.16
22 23 5.934625 GCTTTCTACTTCTCTTGATTGACCA 59.065 40.000 0.00 0.00 0.00 4.02
23 24 5.352846 GGCTTTCTACTTCTCTTGATTGACC 59.647 44.000 0.00 0.00 0.00 4.02
24 25 5.934625 TGGCTTTCTACTTCTCTTGATTGAC 59.065 40.000 0.00 0.00 0.00 3.18
25 26 6.014242 TCTGGCTTTCTACTTCTCTTGATTGA 60.014 38.462 0.00 0.00 0.00 2.57
26 27 6.169094 TCTGGCTTTCTACTTCTCTTGATTG 58.831 40.000 0.00 0.00 0.00 2.67
27 28 6.365970 TCTGGCTTTCTACTTCTCTTGATT 57.634 37.500 0.00 0.00 0.00 2.57
28 29 6.365970 TTCTGGCTTTCTACTTCTCTTGAT 57.634 37.500 0.00 0.00 0.00 2.57
29 30 5.808366 TTCTGGCTTTCTACTTCTCTTGA 57.192 39.130 0.00 0.00 0.00 3.02
30 31 6.867662 TTTTCTGGCTTTCTACTTCTCTTG 57.132 37.500 0.00 0.00 0.00 3.02
31 32 7.095017 CGATTTTTCTGGCTTTCTACTTCTCTT 60.095 37.037 0.00 0.00 0.00 2.85
32 33 6.370166 CGATTTTTCTGGCTTTCTACTTCTCT 59.630 38.462 0.00 0.00 0.00 3.10
33 34 6.147985 ACGATTTTTCTGGCTTTCTACTTCTC 59.852 38.462 0.00 0.00 0.00 2.87
34 35 5.998363 ACGATTTTTCTGGCTTTCTACTTCT 59.002 36.000 0.00 0.00 0.00 2.85
35 36 6.080406 CACGATTTTTCTGGCTTTCTACTTC 58.920 40.000 0.00 0.00 0.00 3.01
36 37 5.531287 ACACGATTTTTCTGGCTTTCTACTT 59.469 36.000 0.00 0.00 0.00 2.24
37 38 5.049405 CACACGATTTTTCTGGCTTTCTACT 60.049 40.000 0.00 0.00 0.00 2.57
38 39 5.147162 CACACGATTTTTCTGGCTTTCTAC 58.853 41.667 0.00 0.00 0.00 2.59
39 40 4.215399 CCACACGATTTTTCTGGCTTTCTA 59.785 41.667 0.00 0.00 0.00 2.10
40 41 3.004734 CCACACGATTTTTCTGGCTTTCT 59.995 43.478 0.00 0.00 0.00 2.52
41 42 3.308530 CCACACGATTTTTCTGGCTTTC 58.691 45.455 0.00 0.00 0.00 2.62
42 43 2.035832 CCCACACGATTTTTCTGGCTTT 59.964 45.455 0.00 0.00 0.00 3.51
43 44 1.613437 CCCACACGATTTTTCTGGCTT 59.387 47.619 0.00 0.00 0.00 4.35
44 45 1.247567 CCCACACGATTTTTCTGGCT 58.752 50.000 0.00 0.00 0.00 4.75
45 46 0.243636 CCCCACACGATTTTTCTGGC 59.756 55.000 0.00 0.00 0.00 4.85
46 47 1.904287 TCCCCACACGATTTTTCTGG 58.096 50.000 0.00 0.00 0.00 3.86
47 48 2.351738 GCTTCCCCACACGATTTTTCTG 60.352 50.000 0.00 0.00 0.00 3.02
48 49 1.886542 GCTTCCCCACACGATTTTTCT 59.113 47.619 0.00 0.00 0.00 2.52
49 50 1.401018 CGCTTCCCCACACGATTTTTC 60.401 52.381 0.00 0.00 0.00 2.29
50 51 0.596082 CGCTTCCCCACACGATTTTT 59.404 50.000 0.00 0.00 0.00 1.94
51 52 0.250553 TCGCTTCCCCACACGATTTT 60.251 50.000 0.00 0.00 0.00 1.82
52 53 0.035439 ATCGCTTCCCCACACGATTT 60.035 50.000 0.00 0.00 42.18 2.17
53 54 0.744414 CATCGCTTCCCCACACGATT 60.744 55.000 0.00 0.00 42.92 3.34
54 55 1.153369 CATCGCTTCCCCACACGAT 60.153 57.895 0.00 0.00 45.45 3.73
55 56 2.264480 CATCGCTTCCCCACACGA 59.736 61.111 0.00 0.00 39.11 4.35
56 57 2.819595 CCATCGCTTCCCCACACG 60.820 66.667 0.00 0.00 0.00 4.49
57 58 1.745489 GTCCATCGCTTCCCCACAC 60.745 63.158 0.00 0.00 0.00 3.82
58 59 2.184020 CTGTCCATCGCTTCCCCACA 62.184 60.000 0.00 0.00 0.00 4.17
59 60 1.450312 CTGTCCATCGCTTCCCCAC 60.450 63.158 0.00 0.00 0.00 4.61
60 61 1.198094 TTCTGTCCATCGCTTCCCCA 61.198 55.000 0.00 0.00 0.00 4.96
61 62 0.035439 TTTCTGTCCATCGCTTCCCC 60.035 55.000 0.00 0.00 0.00 4.81
62 63 1.821216 TTTTCTGTCCATCGCTTCCC 58.179 50.000 0.00 0.00 0.00 3.97
79 80 4.412199 TCGATACCTCCTCCCATCATTTTT 59.588 41.667 0.00 0.00 0.00 1.94
80 81 3.973973 TCGATACCTCCTCCCATCATTTT 59.026 43.478 0.00 0.00 0.00 1.82
81 82 3.587498 TCGATACCTCCTCCCATCATTT 58.413 45.455 0.00 0.00 0.00 2.32
82 83 3.260269 TCGATACCTCCTCCCATCATT 57.740 47.619 0.00 0.00 0.00 2.57
83 84 3.481559 ATCGATACCTCCTCCCATCAT 57.518 47.619 0.00 0.00 0.00 2.45
84 85 3.878131 GCTATCGATACCTCCTCCCATCA 60.878 52.174 0.00 0.00 0.00 3.07
85 86 2.691011 GCTATCGATACCTCCTCCCATC 59.309 54.545 0.00 0.00 0.00 3.51
86 87 2.043115 TGCTATCGATACCTCCTCCCAT 59.957 50.000 0.00 0.00 0.00 4.00
87 88 1.427753 TGCTATCGATACCTCCTCCCA 59.572 52.381 0.00 0.00 0.00 4.37
88 89 2.217510 TGCTATCGATACCTCCTCCC 57.782 55.000 0.00 0.00 0.00 4.30
89 90 4.339814 CCTTATGCTATCGATACCTCCTCC 59.660 50.000 0.00 0.00 0.00 4.30
90 91 5.194432 TCCTTATGCTATCGATACCTCCTC 58.806 45.833 0.00 0.00 0.00 3.71
91 92 5.194473 TCCTTATGCTATCGATACCTCCT 57.806 43.478 0.00 0.00 0.00 3.69
92 93 4.339814 CCTCCTTATGCTATCGATACCTCC 59.660 50.000 0.00 0.00 0.00 4.30
93 94 4.951094 ACCTCCTTATGCTATCGATACCTC 59.049 45.833 0.00 0.00 0.00 3.85
94 95 4.707448 CACCTCCTTATGCTATCGATACCT 59.293 45.833 0.00 0.00 0.00 3.08
95 96 4.705507 TCACCTCCTTATGCTATCGATACC 59.294 45.833 0.00 0.00 0.00 2.73
96 97 5.899120 TCACCTCCTTATGCTATCGATAC 57.101 43.478 0.00 0.00 0.00 2.24
97 98 5.297029 CGATCACCTCCTTATGCTATCGATA 59.703 44.000 4.78 4.78 37.71 2.92
98 99 4.097135 CGATCACCTCCTTATGCTATCGAT 59.903 45.833 2.16 2.16 37.71 3.59
99 100 3.440522 CGATCACCTCCTTATGCTATCGA 59.559 47.826 0.00 0.00 37.71 3.59
100 101 3.440522 TCGATCACCTCCTTATGCTATCG 59.559 47.826 0.00 0.00 37.05 2.92
101 102 5.164954 GTTCGATCACCTCCTTATGCTATC 58.835 45.833 0.00 0.00 0.00 2.08
102 103 4.021016 GGTTCGATCACCTCCTTATGCTAT 60.021 45.833 0.00 0.00 33.50 2.97
103 104 3.321111 GGTTCGATCACCTCCTTATGCTA 59.679 47.826 0.00 0.00 33.50 3.49
104 105 2.103263 GGTTCGATCACCTCCTTATGCT 59.897 50.000 0.00 0.00 33.50 3.79
105 106 2.158957 TGGTTCGATCACCTCCTTATGC 60.159 50.000 7.76 0.00 37.75 3.14
106 107 3.819564 TGGTTCGATCACCTCCTTATG 57.180 47.619 7.76 0.00 37.75 1.90
107 108 3.967326 TGATGGTTCGATCACCTCCTTAT 59.033 43.478 7.76 0.00 37.75 1.73
108 109 3.132289 GTGATGGTTCGATCACCTCCTTA 59.868 47.826 14.11 0.00 44.44 2.69
109 110 2.093447 GTGATGGTTCGATCACCTCCTT 60.093 50.000 14.11 0.00 44.44 3.36
110 111 1.482593 GTGATGGTTCGATCACCTCCT 59.517 52.381 14.11 0.00 44.44 3.69
111 112 1.802880 CGTGATGGTTCGATCACCTCC 60.803 57.143 17.53 2.50 46.52 4.30
112 113 1.134367 TCGTGATGGTTCGATCACCTC 59.866 52.381 17.53 5.43 46.52 3.85
113 114 1.135083 GTCGTGATGGTTCGATCACCT 60.135 52.381 17.53 0.00 46.52 4.00
114 115 1.278238 GTCGTGATGGTTCGATCACC 58.722 55.000 17.53 5.41 46.52 4.02
115 116 0.914551 CGTCGTGATGGTTCGATCAC 59.085 55.000 14.77 14.77 46.00 3.06
116 117 0.524414 ACGTCGTGATGGTTCGATCA 59.476 50.000 0.00 0.00 38.32 2.92
117 118 1.625616 AACGTCGTGATGGTTCGATC 58.374 50.000 0.00 0.00 38.32 3.69
118 119 1.724623 CAAACGTCGTGATGGTTCGAT 59.275 47.619 0.00 0.00 38.32 3.59
119 120 1.133407 CAAACGTCGTGATGGTTCGA 58.867 50.000 0.00 0.00 0.00 3.71
120 121 1.133407 TCAAACGTCGTGATGGTTCG 58.867 50.000 0.00 0.00 0.00 3.95
121 122 3.432252 AGAATCAAACGTCGTGATGGTTC 59.568 43.478 21.19 21.19 35.87 3.62
122 123 3.399330 AGAATCAAACGTCGTGATGGTT 58.601 40.909 13.69 9.06 35.87 3.67
123 124 3.040147 AGAATCAAACGTCGTGATGGT 57.960 42.857 13.69 0.00 35.87 3.55
124 125 3.679980 AGAAGAATCAAACGTCGTGATGG 59.320 43.478 13.69 0.00 35.87 3.51
125 126 4.910746 AGAAGAATCAAACGTCGTGATG 57.089 40.909 13.69 1.52 35.87 3.07
126 127 5.924475 AAAGAAGAATCAAACGTCGTGAT 57.076 34.783 0.00 8.49 37.31 3.06
127 128 6.831727 TTAAAGAAGAATCAAACGTCGTGA 57.168 33.333 0.00 4.53 0.00 4.35
128 129 8.433126 ACTATTAAAGAAGAATCAAACGTCGTG 58.567 33.333 0.00 0.00 0.00 4.35
129 130 8.530269 ACTATTAAAGAAGAATCAAACGTCGT 57.470 30.769 0.00 0.00 0.00 4.34
151 152 9.661563 ACCGTTTGATGATACAAATTTCTACTA 57.338 29.630 0.00 0.00 40.91 1.82
152 153 8.561738 ACCGTTTGATGATACAAATTTCTACT 57.438 30.769 0.00 0.00 40.91 2.57
153 154 9.061610 CAACCGTTTGATGATACAAATTTCTAC 57.938 33.333 0.00 0.00 40.91 2.59
154 155 9.004717 TCAACCGTTTGATGATACAAATTTCTA 57.995 29.630 0.00 0.00 40.91 2.10
155 156 7.807907 GTCAACCGTTTGATGATACAAATTTCT 59.192 33.333 0.00 0.00 43.72 2.52
156 157 7.938743 GTCAACCGTTTGATGATACAAATTTC 58.061 34.615 0.00 0.00 43.72 2.17
157 158 7.867445 GTCAACCGTTTGATGATACAAATTT 57.133 32.000 0.00 0.00 43.72 1.82
174 175 0.882927 AACCACATCCACGTCAACCG 60.883 55.000 0.00 0.00 44.03 4.44
175 176 1.001815 CAAACCACATCCACGTCAACC 60.002 52.381 0.00 0.00 0.00 3.77
176 177 1.599419 GCAAACCACATCCACGTCAAC 60.599 52.381 0.00 0.00 0.00 3.18
177 178 0.665835 GCAAACCACATCCACGTCAA 59.334 50.000 0.00 0.00 0.00 3.18
178 179 0.464554 TGCAAACCACATCCACGTCA 60.465 50.000 0.00 0.00 0.00 4.35
179 180 0.881118 ATGCAAACCACATCCACGTC 59.119 50.000 0.00 0.00 0.00 4.34
180 181 0.597568 CATGCAAACCACATCCACGT 59.402 50.000 0.00 0.00 0.00 4.49
181 182 0.109179 CCATGCAAACCACATCCACG 60.109 55.000 0.00 0.00 0.00 4.94
182 183 1.255882 TCCATGCAAACCACATCCAC 58.744 50.000 0.00 0.00 0.00 4.02
183 184 2.234896 ATCCATGCAAACCACATCCA 57.765 45.000 0.00 0.00 0.00 3.41
184 185 3.055963 TCAAATCCATGCAAACCACATCC 60.056 43.478 0.00 0.00 0.00 3.51
185 186 4.191033 TCAAATCCATGCAAACCACATC 57.809 40.909 0.00 0.00 0.00 3.06
186 187 4.283978 TCTTCAAATCCATGCAAACCACAT 59.716 37.500 0.00 0.00 0.00 3.21
187 188 3.640498 TCTTCAAATCCATGCAAACCACA 59.360 39.130 0.00 0.00 0.00 4.17
188 189 4.255833 TCTTCAAATCCATGCAAACCAC 57.744 40.909 0.00 0.00 0.00 4.16
189 190 5.486735 AATCTTCAAATCCATGCAAACCA 57.513 34.783 0.00 0.00 0.00 3.67
190 191 5.933463 TCAAATCTTCAAATCCATGCAAACC 59.067 36.000 0.00 0.00 0.00 3.27
191 192 7.424227 TTCAAATCTTCAAATCCATGCAAAC 57.576 32.000 0.00 0.00 0.00 2.93
192 193 7.716123 ACTTTCAAATCTTCAAATCCATGCAAA 59.284 29.630 0.00 0.00 0.00 3.68
193 194 7.218614 ACTTTCAAATCTTCAAATCCATGCAA 58.781 30.769 0.00 0.00 0.00 4.08
194 195 6.761312 ACTTTCAAATCTTCAAATCCATGCA 58.239 32.000 0.00 0.00 0.00 3.96
195 196 8.761575 TTACTTTCAAATCTTCAAATCCATGC 57.238 30.769 0.00 0.00 0.00 4.06
196 197 9.362539 CCTTACTTTCAAATCTTCAAATCCATG 57.637 33.333 0.00 0.00 0.00 3.66
197 198 8.534496 CCCTTACTTTCAAATCTTCAAATCCAT 58.466 33.333 0.00 0.00 0.00 3.41
198 199 7.728083 TCCCTTACTTTCAAATCTTCAAATCCA 59.272 33.333 0.00 0.00 0.00 3.41
199 200 8.029522 GTCCCTTACTTTCAAATCTTCAAATCC 58.970 37.037 0.00 0.00 0.00 3.01
200 201 8.576442 TGTCCCTTACTTTCAAATCTTCAAATC 58.424 33.333 0.00 0.00 0.00 2.17
201 202 8.477419 TGTCCCTTACTTTCAAATCTTCAAAT 57.523 30.769 0.00 0.00 0.00 2.32
202 203 7.889873 TGTCCCTTACTTTCAAATCTTCAAA 57.110 32.000 0.00 0.00 0.00 2.69
203 204 7.039784 CCATGTCCCTTACTTTCAAATCTTCAA 60.040 37.037 0.00 0.00 0.00 2.69
204 205 6.434028 CCATGTCCCTTACTTTCAAATCTTCA 59.566 38.462 0.00 0.00 0.00 3.02
205 206 6.434340 ACCATGTCCCTTACTTTCAAATCTTC 59.566 38.462 0.00 0.00 0.00 2.87
206 207 6.314917 ACCATGTCCCTTACTTTCAAATCTT 58.685 36.000 0.00 0.00 0.00 2.40
207 208 5.892348 ACCATGTCCCTTACTTTCAAATCT 58.108 37.500 0.00 0.00 0.00 2.40
208 209 6.389906 CAACCATGTCCCTTACTTTCAAATC 58.610 40.000 0.00 0.00 0.00 2.17
209 210 5.279456 GCAACCATGTCCCTTACTTTCAAAT 60.279 40.000 0.00 0.00 0.00 2.32
210 211 4.038642 GCAACCATGTCCCTTACTTTCAAA 59.961 41.667 0.00 0.00 0.00 2.69
211 212 3.572255 GCAACCATGTCCCTTACTTTCAA 59.428 43.478 0.00 0.00 0.00 2.69
212 213 3.153919 GCAACCATGTCCCTTACTTTCA 58.846 45.455 0.00 0.00 0.00 2.69
213 214 3.057526 GTGCAACCATGTCCCTTACTTTC 60.058 47.826 0.00 0.00 0.00 2.62
214 215 2.890945 GTGCAACCATGTCCCTTACTTT 59.109 45.455 0.00 0.00 0.00 2.66
215 216 2.514803 GTGCAACCATGTCCCTTACTT 58.485 47.619 0.00 0.00 0.00 2.24
216 217 1.610624 CGTGCAACCATGTCCCTTACT 60.611 52.381 0.00 0.00 0.00 2.24
217 218 0.802494 CGTGCAACCATGTCCCTTAC 59.198 55.000 0.00 0.00 0.00 2.34
218 219 0.322098 CCGTGCAACCATGTCCCTTA 60.322 55.000 0.00 0.00 0.00 2.69
219 220 1.603455 CCGTGCAACCATGTCCCTT 60.603 57.895 0.00 0.00 0.00 3.95
220 221 2.034066 CCGTGCAACCATGTCCCT 59.966 61.111 0.00 0.00 0.00 4.20
221 222 2.033448 TCCGTGCAACCATGTCCC 59.967 61.111 0.00 0.00 0.00 4.46
222 223 2.677003 CGTCCGTGCAACCATGTCC 61.677 63.158 0.00 0.00 0.00 4.02
223 224 1.225376 TTCGTCCGTGCAACCATGTC 61.225 55.000 0.00 0.00 0.00 3.06
224 225 1.227704 TTCGTCCGTGCAACCATGT 60.228 52.632 0.00 0.00 0.00 3.21
225 226 1.206578 GTTCGTCCGTGCAACCATG 59.793 57.895 0.00 0.00 0.00 3.66
226 227 0.605319 ATGTTCGTCCGTGCAACCAT 60.605 50.000 0.00 0.00 0.00 3.55
227 228 0.816018 AATGTTCGTCCGTGCAACCA 60.816 50.000 0.00 0.00 0.00 3.67
228 229 0.309612 AAATGTTCGTCCGTGCAACC 59.690 50.000 0.00 0.00 0.00 3.77
229 230 2.953640 TAAATGTTCGTCCGTGCAAC 57.046 45.000 0.00 0.00 0.00 4.17
230 231 2.224549 CCTTAAATGTTCGTCCGTGCAA 59.775 45.455 0.00 0.00 0.00 4.08
231 232 1.801771 CCTTAAATGTTCGTCCGTGCA 59.198 47.619 0.00 0.00 0.00 4.57
232 233 1.129811 CCCTTAAATGTTCGTCCGTGC 59.870 52.381 0.00 0.00 0.00 5.34
233 234 1.735571 CCCCTTAAATGTTCGTCCGTG 59.264 52.381 0.00 0.00 0.00 4.94
234 235 1.339342 CCCCCTTAAATGTTCGTCCGT 60.339 52.381 0.00 0.00 0.00 4.69
235 236 1.065998 TCCCCCTTAAATGTTCGTCCG 60.066 52.381 0.00 0.00 0.00 4.79
236 237 2.751259 GTTCCCCCTTAAATGTTCGTCC 59.249 50.000 0.00 0.00 0.00 4.79
237 238 2.417586 CGTTCCCCCTTAAATGTTCGTC 59.582 50.000 0.00 0.00 0.00 4.20
238 239 2.429478 CGTTCCCCCTTAAATGTTCGT 58.571 47.619 0.00 0.00 0.00 3.85
239 240 1.131693 GCGTTCCCCCTTAAATGTTCG 59.868 52.381 0.00 0.00 0.00 3.95
240 241 2.163613 CAGCGTTCCCCCTTAAATGTTC 59.836 50.000 0.00 0.00 0.00 3.18
241 242 2.167662 CAGCGTTCCCCCTTAAATGTT 58.832 47.619 0.00 0.00 0.00 2.71
242 243 1.074889 ACAGCGTTCCCCCTTAAATGT 59.925 47.619 0.00 0.00 0.00 2.71
243 244 1.743394 GACAGCGTTCCCCCTTAAATG 59.257 52.381 0.00 0.00 0.00 2.32
244 245 1.633945 AGACAGCGTTCCCCCTTAAAT 59.366 47.619 0.00 0.00 0.00 1.40
245 246 1.061546 AGACAGCGTTCCCCCTTAAA 58.938 50.000 0.00 0.00 0.00 1.52
246 247 0.323629 CAGACAGCGTTCCCCCTTAA 59.676 55.000 0.00 0.00 0.00 1.85
247 248 1.980052 CAGACAGCGTTCCCCCTTA 59.020 57.895 0.00 0.00 0.00 2.69
248 249 2.750350 CAGACAGCGTTCCCCCTT 59.250 61.111 0.00 0.00 0.00 3.95
249 250 4.021925 GCAGACAGCGTTCCCCCT 62.022 66.667 0.00 0.00 0.00 4.79
258 259 3.874873 TGTATGTGCGCAGACAGC 58.125 55.556 22.89 3.89 41.30 4.40
260 261 0.108662 CCTCTGTATGTGCGCAGACA 60.109 55.000 24.74 24.74 43.58 3.41
261 262 0.807667 CCCTCTGTATGTGCGCAGAC 60.808 60.000 17.83 17.83 36.89 3.51
262 263 1.517361 CCCTCTGTATGTGCGCAGA 59.483 57.895 12.22 11.37 39.17 4.26
263 264 1.522355 CCCCTCTGTATGTGCGCAG 60.522 63.158 12.22 0.00 0.00 5.18
264 265 2.584064 CCCCTCTGTATGTGCGCA 59.416 61.111 5.66 5.66 0.00 6.09
265 266 2.897350 GCCCCTCTGTATGTGCGC 60.897 66.667 0.00 0.00 0.00 6.09
266 267 2.586079 CGCCCCTCTGTATGTGCG 60.586 66.667 0.00 0.00 35.81 5.34
267 268 2.044806 ATCCGCCCCTCTGTATGTGC 62.045 60.000 0.00 0.00 0.00 4.57
268 269 0.469917 AATCCGCCCCTCTGTATGTG 59.530 55.000 0.00 0.00 0.00 3.21
269 270 1.134098 CAAATCCGCCCCTCTGTATGT 60.134 52.381 0.00 0.00 0.00 2.29
270 271 1.597742 CAAATCCGCCCCTCTGTATG 58.402 55.000 0.00 0.00 0.00 2.39
271 272 0.179018 GCAAATCCGCCCCTCTGTAT 60.179 55.000 0.00 0.00 0.00 2.29
272 273 1.223487 GCAAATCCGCCCCTCTGTA 59.777 57.895 0.00 0.00 0.00 2.74
273 274 2.044946 GCAAATCCGCCCCTCTGT 60.045 61.111 0.00 0.00 0.00 3.41
281 282 1.077915 CAAACATTGGGCAAATCCGC 58.922 50.000 0.00 0.00 34.94 5.54
282 283 2.453983 ACAAACATTGGGCAAATCCG 57.546 45.000 0.00 0.00 34.94 4.18
283 284 4.799564 TCTACAAACATTGGGCAAATCC 57.200 40.909 0.00 0.00 34.12 3.01
284 285 4.567959 GCATCTACAAACATTGGGCAAATC 59.432 41.667 0.00 0.00 34.12 2.17
285 286 4.223477 AGCATCTACAAACATTGGGCAAAT 59.777 37.500 0.00 0.00 34.12 2.32
286 287 3.577848 AGCATCTACAAACATTGGGCAAA 59.422 39.130 0.00 0.00 34.12 3.68
287 288 3.164268 AGCATCTACAAACATTGGGCAA 58.836 40.909 0.00 0.00 34.12 4.52
288 289 2.754552 GAGCATCTACAAACATTGGGCA 59.245 45.455 0.00 0.00 34.12 5.36
289 290 3.427161 GAGCATCTACAAACATTGGGC 57.573 47.619 0.00 0.00 34.12 5.36
303 304 5.126396 ACTTTTTGGCTTGTAAGAGCATC 57.874 39.130 0.00 0.00 44.49 3.91
304 305 5.302823 AGAACTTTTTGGCTTGTAAGAGCAT 59.697 36.000 0.00 0.00 44.49 3.79
324 325 7.983307 AGATCATCTGATTTTTACAGCAGAAC 58.017 34.615 0.00 0.00 40.38 3.01
340 341 6.519679 TCAAACCAAAATCCAGATCATCTG 57.480 37.500 7.79 7.79 43.91 2.90
341 342 6.723052 ACTTCAAACCAAAATCCAGATCATCT 59.277 34.615 0.00 0.00 0.00 2.90
342 343 6.928520 ACTTCAAACCAAAATCCAGATCATC 58.071 36.000 0.00 0.00 0.00 2.92
343 344 6.923199 ACTTCAAACCAAAATCCAGATCAT 57.077 33.333 0.00 0.00 0.00 2.45
344 345 6.729690 AACTTCAAACCAAAATCCAGATCA 57.270 33.333 0.00 0.00 0.00 2.92
345 346 8.110860 TCTAACTTCAAACCAAAATCCAGATC 57.889 34.615 0.00 0.00 0.00 2.75
346 347 8.655935 ATCTAACTTCAAACCAAAATCCAGAT 57.344 30.769 0.00 0.00 0.00 2.90
348 349 7.599998 CCAATCTAACTTCAAACCAAAATCCAG 59.400 37.037 0.00 0.00 0.00 3.86
363 364 3.266772 TCCACAGCCATCCAATCTAACTT 59.733 43.478 0.00 0.00 0.00 2.66
364 365 2.846206 TCCACAGCCATCCAATCTAACT 59.154 45.455 0.00 0.00 0.00 2.24
412 413 0.322098 TATGGCCAGGTTTGGTGTCG 60.322 55.000 13.05 0.00 46.80 4.35
447 448 1.076995 GGGCCTAAATTCCGTGCCT 60.077 57.895 0.84 0.00 41.84 4.75
460 473 3.941188 CGGGCATATGTCGGGCCT 61.941 66.667 0.84 0.00 46.79 5.19
481 494 2.224549 CGACCTTTTTAATGGCGTGTCA 59.775 45.455 0.00 0.00 0.00 3.58
487 500 1.135112 CAGCCCGACCTTTTTAATGGC 60.135 52.381 0.00 0.00 37.68 4.40
489 502 3.487563 GTCAGCCCGACCTTTTTAATG 57.512 47.619 0.00 0.00 38.85 1.90
514 527 2.132352 CCTAGTCCCGTGGTAGGCC 61.132 68.421 0.00 0.00 0.00 5.19
519 532 1.001760 ATCTGCCTAGTCCCGTGGT 59.998 57.895 0.00 0.00 0.00 4.16
553 566 1.677633 GTGTTGTGCCCGGCCTTAT 60.678 57.895 7.03 0.00 0.00 1.73
573 586 4.808364 GTGTTGGCAAGCAATCAAAAAGTA 59.192 37.500 0.00 0.00 0.00 2.24
581 594 4.557942 CCGTGTTGGCAAGCAATC 57.442 55.556 0.00 0.00 0.00 2.67
603 616 6.509656 AGATAAATGATAGTTACGCGTTGGA 58.490 36.000 20.78 0.28 0.00 3.53
723 781 6.292649 GCCGTTTGTTTTTAGAAAATTCAGGG 60.293 38.462 0.00 0.00 0.00 4.45
735 793 3.067040 GTCTTCTGGGCCGTTTGTTTTTA 59.933 43.478 0.00 0.00 0.00 1.52
750 808 5.390991 GGCTAAATTGTTTCTCGGTCTTCTG 60.391 44.000 0.00 0.00 0.00 3.02
769 827 3.026431 GCACTACAGGCCGGGCTAA 62.026 63.158 32.31 20.44 0.00 3.09
869 935 2.673687 CCGGCCCGGCTGTAAAAA 60.674 61.111 10.42 0.00 41.17 1.94
909 985 1.668867 GCTAGGCTAGGCTAGGTGC 59.331 63.158 39.31 28.67 41.94 5.01
911 987 4.957057 GGCTAGGCTAGGCTAGGT 57.043 61.111 39.31 16.44 46.78 3.08
1635 2098 0.532862 CGGTTGTGAGGTCTGCAGTT 60.533 55.000 14.67 0.29 0.00 3.16
1680 2143 2.304180 CCTCTCCACACAGGACAGAATT 59.696 50.000 0.00 0.00 43.07 2.17
1700 2163 3.371097 TTGCGATCAGAGACGGCCC 62.371 63.158 0.00 0.00 0.00 5.80
1731 2194 0.597637 CGTTGAGTGCCGACTTGAGT 60.598 55.000 0.00 0.00 30.16 3.41
1743 2206 4.003788 CGGACTGGGGCGTTGAGT 62.004 66.667 0.00 0.00 0.00 3.41
1776 2239 1.007238 TCGAGATCCTTCTCCCTTGGT 59.993 52.381 0.00 0.00 44.76 3.67
1818 2281 3.117512 TCTTCCTGAGCACCTTCCTTTTT 60.118 43.478 0.00 0.00 0.00 1.94
1887 2350 4.761739 CCAAAGAACAGTCTCAGCCAATAA 59.238 41.667 0.00 0.00 30.70 1.40
2118 2581 2.192263 GTCTTCTCCCTCCCACTTGAT 58.808 52.381 0.00 0.00 0.00 2.57
2175 2638 2.044352 CCCCGGACCCCAATCAAC 60.044 66.667 0.73 0.00 0.00 3.18
2277 2740 2.303890 TGTGATGTGCTCAATCTCCACT 59.696 45.455 0.00 0.00 35.07 4.00
2361 2824 1.122632 TGTTTCCTCCACTGGCGGTA 61.123 55.000 0.00 0.00 0.00 4.02
2376 3731 4.170468 ACCCTTCTCACTCACAATGTTT 57.830 40.909 0.00 0.00 0.00 2.83
2394 3749 6.601613 TGACAGATAACAATGTTCCAATACCC 59.398 38.462 0.22 0.00 0.00 3.69
2634 3989 2.521105 AAAGCTTTGCCAAAGAGCTG 57.479 45.000 21.00 0.00 45.42 4.24
2658 4013 5.365895 ACGGGATTTTAGTCTATACCTTGCT 59.634 40.000 0.00 0.00 0.00 3.91
2892 4247 5.985530 TGGATCTTGCAGTTTGATATACTCG 59.014 40.000 0.00 0.00 0.00 4.18
3148 4503 6.454795 TCTGCTTATGTGCAATCGATGTATA 58.545 36.000 0.00 0.00 42.83 1.47
3218 4576 1.401552 CCATTGGTATTCCGCACACAG 59.598 52.381 0.00 0.00 36.30 3.66
3226 4584 5.547465 TCATACATCGTCCATTGGTATTCC 58.453 41.667 1.86 0.00 0.00 3.01
3233 4591 3.245284 GGTCGTTCATACATCGTCCATTG 59.755 47.826 0.00 0.00 34.22 2.82
3239 4597 4.024218 GCTAGTAGGTCGTTCATACATCGT 60.024 45.833 0.00 0.00 35.99 3.73
3240 4598 4.213694 AGCTAGTAGGTCGTTCATACATCG 59.786 45.833 0.00 0.00 35.99 3.84
3248 4606 6.374565 TGATCTTTAGCTAGTAGGTCGTTC 57.625 41.667 4.85 2.19 0.00 3.95
3259 4617 4.441634 GCCCGAGTTCTTGATCTTTAGCTA 60.442 45.833 0.00 0.00 0.00 3.32
3269 4627 4.157656 CCAAATATTTGCCCGAGTTCTTGA 59.842 41.667 20.67 0.00 36.86 3.02
3276 4634 4.097741 TGAACATCCAAATATTTGCCCGAG 59.902 41.667 20.67 8.51 36.86 4.63
3278 4636 4.383850 TGAACATCCAAATATTTGCCCG 57.616 40.909 20.67 13.13 36.86 6.13
3338 4703 5.407407 ACACATGAGTTTACCTCGAGATT 57.593 39.130 15.71 2.53 43.64 2.40
3406 4771 6.703165 AGAACATCAAACAGAAAAAGAATGGC 59.297 34.615 0.00 0.00 0.00 4.40
3468 4833 6.755206 TGCTAGTGTCACAGTAACTACAAAT 58.245 36.000 5.62 0.00 0.00 2.32
3479 4844 1.802960 CCAGCTTTGCTAGTGTCACAG 59.197 52.381 5.62 2.18 36.40 3.66
3490 4855 4.454728 TTCATTGTATTCCCAGCTTTGC 57.545 40.909 0.00 0.00 0.00 3.68
3554 4928 5.621193 ACTGTGTAAGGCTTGAATAAGTGT 58.379 37.500 10.69 0.00 36.27 3.55
3628 5002 9.547753 CTACCTATGAGCACAAAAAGTATATGT 57.452 33.333 0.00 0.00 0.00 2.29
3633 5007 6.999950 TGTCTACCTATGAGCACAAAAAGTA 58.000 36.000 0.00 0.00 0.00 2.24
3638 5014 7.498900 CCATTATTGTCTACCTATGAGCACAAA 59.501 37.037 0.00 0.00 0.00 2.83
3641 5017 5.934625 CCCATTATTGTCTACCTATGAGCAC 59.065 44.000 0.00 0.00 0.00 4.40
3646 5022 6.935240 TCCTCCCATTATTGTCTACCTATG 57.065 41.667 0.00 0.00 0.00 2.23
3650 5026 5.743422 GCTCTTCCTCCCATTATTGTCTACC 60.743 48.000 0.00 0.00 0.00 3.18
3655 5031 2.852449 TGGCTCTTCCTCCCATTATTGT 59.148 45.455 0.00 0.00 35.26 2.71
3664 5040 3.573967 TCAAAAACAATGGCTCTTCCTCC 59.426 43.478 0.00 0.00 35.26 4.30
3672 5048 4.943093 AGCAAACTTTCAAAAACAATGGCT 59.057 33.333 0.00 0.00 0.00 4.75
3673 5049 5.029654 CAGCAAACTTTCAAAAACAATGGC 58.970 37.500 0.00 0.00 0.00 4.40
3674 5050 6.180771 ACAGCAAACTTTCAAAAACAATGG 57.819 33.333 0.00 0.00 0.00 3.16
3686 5062 4.690280 CACTTCCAAACAACAGCAAACTTT 59.310 37.500 0.00 0.00 0.00 2.66
3697 5073 3.201353 TCCATCGTCACTTCCAAACAA 57.799 42.857 0.00 0.00 0.00 2.83
3709 5085 9.809096 ATCACATATATGAAACTATCCATCGTC 57.191 33.333 19.63 0.00 30.82 4.20
3739 5115 7.781056 AGAACAAGCCTTGAGAATTTACAAAA 58.219 30.769 12.25 0.00 0.00 2.44
3773 5149 9.471084 GAGCTTATACTCTTTATCAGTTCTTCC 57.529 37.037 0.00 0.00 33.69 3.46
3796 5174 4.306600 ACGAAACAAAATTTCCCATGAGC 58.693 39.130 0.00 0.00 0.00 4.26
3835 5213 4.445385 GCAACAGAAAAAGCACCAGTATTG 59.555 41.667 0.00 0.00 0.00 1.90
3847 5225 4.344679 ACATGGAATCCTGCAACAGAAAAA 59.655 37.500 0.00 0.00 32.44 1.94
3949 5334 9.771140 ACGGAGGGAGTAGATATTTCTTTATAT 57.229 33.333 0.00 0.00 33.17 0.86
3950 5335 9.240734 GACGGAGGGAGTAGATATTTCTTTATA 57.759 37.037 0.00 0.00 33.17 0.98
3951 5336 7.178805 GGACGGAGGGAGTAGATATTTCTTTAT 59.821 40.741 0.00 0.00 33.17 1.40
3952 5337 6.492772 GGACGGAGGGAGTAGATATTTCTTTA 59.507 42.308 0.00 0.00 33.17 1.85
3953 5338 5.304871 GGACGGAGGGAGTAGATATTTCTTT 59.695 44.000 0.00 0.00 33.17 2.52
3954 5339 4.833938 GGACGGAGGGAGTAGATATTTCTT 59.166 45.833 0.00 0.00 33.17 2.52
3955 5340 4.409187 GGACGGAGGGAGTAGATATTTCT 58.591 47.826 0.00 0.00 35.90 2.52
3956 5341 3.510753 GGGACGGAGGGAGTAGATATTTC 59.489 52.174 0.00 0.00 0.00 2.17
3957 5342 3.116862 TGGGACGGAGGGAGTAGATATTT 60.117 47.826 0.00 0.00 0.00 1.40
3958 5343 2.449730 TGGGACGGAGGGAGTAGATATT 59.550 50.000 0.00 0.00 0.00 1.28
3959 5344 2.071372 TGGGACGGAGGGAGTAGATAT 58.929 52.381 0.00 0.00 0.00 1.63
3960 5345 1.144503 GTGGGACGGAGGGAGTAGATA 59.855 57.143 0.00 0.00 0.00 1.98
3961 5346 0.106116 GTGGGACGGAGGGAGTAGAT 60.106 60.000 0.00 0.00 0.00 1.98
3962 5347 1.305623 GTGGGACGGAGGGAGTAGA 59.694 63.158 0.00 0.00 0.00 2.59
3963 5348 0.613853 TTGTGGGACGGAGGGAGTAG 60.614 60.000 0.00 0.00 0.00 2.57
3964 5349 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
3965 5350 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
3966 5351 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3967 5352 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3968 5353 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3969 5354 4.618460 CGATCTTATATTGTGGGACGGAGG 60.618 50.000 0.00 0.00 0.00 4.30
3970 5355 4.022242 ACGATCTTATATTGTGGGACGGAG 60.022 45.833 0.00 0.00 0.00 4.63
3971 5356 3.893200 ACGATCTTATATTGTGGGACGGA 59.107 43.478 0.00 0.00 0.00 4.69
3972 5357 4.252971 ACGATCTTATATTGTGGGACGG 57.747 45.455 0.00 0.00 0.00 4.79
3973 5358 6.598753 AAAACGATCTTATATTGTGGGACG 57.401 37.500 0.00 0.00 0.00 4.79
3974 5359 7.981142 TGAAAAACGATCTTATATTGTGGGAC 58.019 34.615 0.00 0.00 0.00 4.46
3975 5360 8.568676 TTGAAAAACGATCTTATATTGTGGGA 57.431 30.769 0.00 0.00 0.00 4.37
3976 5361 7.432252 GCTTGAAAAACGATCTTATATTGTGGG 59.568 37.037 0.00 0.00 0.00 4.61
3977 5362 8.184192 AGCTTGAAAAACGATCTTATATTGTGG 58.816 33.333 0.00 0.00 0.00 4.17
3985 5370 9.431887 ACTAACATAGCTTGAAAAACGATCTTA 57.568 29.630 0.00 0.00 0.00 2.10
3986 5371 8.324163 ACTAACATAGCTTGAAAAACGATCTT 57.676 30.769 0.00 0.00 0.00 2.40
3987 5372 7.907214 ACTAACATAGCTTGAAAAACGATCT 57.093 32.000 0.00 0.00 0.00 2.75
3988 5373 8.840867 CAAACTAACATAGCTTGAAAAACGATC 58.159 33.333 0.00 0.00 34.61 3.69
3989 5374 8.564574 TCAAACTAACATAGCTTGAAAAACGAT 58.435 29.630 0.00 0.00 37.79 3.73
3990 5375 7.921787 TCAAACTAACATAGCTTGAAAAACGA 58.078 30.769 0.00 0.00 37.79 3.85
3991 5376 8.555166 TTCAAACTAACATAGCTTGAAAAACG 57.445 30.769 11.51 0.00 43.75 3.60
3996 5381 8.399425 TCGTTTTTCAAACTAACATAGCTTGAA 58.601 29.630 10.37 10.37 44.52 2.69
3997 5382 7.921787 TCGTTTTTCAAACTAACATAGCTTGA 58.078 30.769 0.00 0.38 38.65 3.02
3998 5383 8.728088 ATCGTTTTTCAAACTAACATAGCTTG 57.272 30.769 0.00 0.00 34.13 4.01
3999 5384 8.784043 AGATCGTTTTTCAAACTAACATAGCTT 58.216 29.630 0.00 0.00 0.00 3.74
4000 5385 8.324163 AGATCGTTTTTCAAACTAACATAGCT 57.676 30.769 0.00 0.00 0.00 3.32
4001 5386 8.950403 AAGATCGTTTTTCAAACTAACATAGC 57.050 30.769 0.00 0.00 0.00 2.97
4009 5394 8.784043 AGCTTGTATAAGATCGTTTTTCAAACT 58.216 29.630 3.01 0.00 35.92 2.66
4010 5395 8.950403 AGCTTGTATAAGATCGTTTTTCAAAC 57.050 30.769 3.01 0.00 35.92 2.93
4013 5398 9.378551 ACATAGCTTGTATAAGATCGTTTTTCA 57.621 29.630 3.01 0.00 36.57 2.69
4027 5412 9.607285 CGTTTTTCAAACTAACATAGCTTGTAT 57.393 29.630 0.00 0.00 37.68 2.29
4028 5413 8.828644 TCGTTTTTCAAACTAACATAGCTTGTA 58.171 29.630 0.00 0.00 37.68 2.41
4029 5414 7.699566 TCGTTTTTCAAACTAACATAGCTTGT 58.300 30.769 0.00 0.00 41.53 3.16
4030 5415 8.728088 ATCGTTTTTCAAACTAACATAGCTTG 57.272 30.769 0.00 0.00 34.13 4.01
4031 5416 8.784043 AGATCGTTTTTCAAACTAACATAGCTT 58.216 29.630 0.00 0.00 0.00 3.74
4032 5417 8.324163 AGATCGTTTTTCAAACTAACATAGCT 57.676 30.769 0.00 0.00 0.00 3.32
4033 5418 8.950403 AAGATCGTTTTTCAAACTAACATAGC 57.050 30.769 0.00 0.00 0.00 2.97
4041 5426 9.840427 CCACAATATAAGATCGTTTTTCAAACT 57.160 29.630 0.00 0.00 0.00 2.66
4042 5427 9.072294 CCCACAATATAAGATCGTTTTTCAAAC 57.928 33.333 0.00 0.00 0.00 2.93
4043 5428 9.015367 TCCCACAATATAAGATCGTTTTTCAAA 57.985 29.630 0.00 0.00 0.00 2.69
4044 5429 8.455682 GTCCCACAATATAAGATCGTTTTTCAA 58.544 33.333 0.00 0.00 0.00 2.69
4045 5430 7.201574 CGTCCCACAATATAAGATCGTTTTTCA 60.202 37.037 0.00 0.00 0.00 2.69
4046 5431 7.123830 CGTCCCACAATATAAGATCGTTTTTC 58.876 38.462 0.00 0.00 0.00 2.29
4047 5432 6.037830 CCGTCCCACAATATAAGATCGTTTTT 59.962 38.462 0.00 0.00 0.00 1.94
4048 5433 5.526111 CCGTCCCACAATATAAGATCGTTTT 59.474 40.000 0.00 0.00 0.00 2.43
4049 5434 5.054477 CCGTCCCACAATATAAGATCGTTT 58.946 41.667 0.00 0.00 0.00 3.60
4050 5435 4.342951 TCCGTCCCACAATATAAGATCGTT 59.657 41.667 0.00 0.00 0.00 3.85
4051 5436 3.893200 TCCGTCCCACAATATAAGATCGT 59.107 43.478 0.00 0.00 0.00 3.73
4052 5437 4.486090 CTCCGTCCCACAATATAAGATCG 58.514 47.826 0.00 0.00 0.00 3.69
4053 5438 4.322801 CCCTCCGTCCCACAATATAAGATC 60.323 50.000 0.00 0.00 0.00 2.75
4054 5439 3.583086 CCCTCCGTCCCACAATATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
4055 5440 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4056 5441 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
4057 5442 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
4058 5443 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
4059 5444 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
4060 5445 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
4061 5446 1.229529 ACTCCCTCCGTCCCACAAT 60.230 57.895 0.00 0.00 0.00 2.71
4062 5447 2.203182 ACTCCCTCCGTCCCACAA 59.797 61.111 0.00 0.00 0.00 3.33
4063 5448 2.455960 ATCACTCCCTCCGTCCCACA 62.456 60.000 0.00 0.00 0.00 4.17
4064 5449 1.265454 AATCACTCCCTCCGTCCCAC 61.265 60.000 0.00 0.00 0.00 4.61
4065 5450 0.337082 TAATCACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
4066 5451 1.413077 CTTAATCACTCCCTCCGTCCC 59.587 57.143 0.00 0.00 0.00 4.46
4067 5452 2.385803 TCTTAATCACTCCCTCCGTCC 58.614 52.381 0.00 0.00 0.00 4.79
4068 5453 3.194968 TGTTCTTAATCACTCCCTCCGTC 59.805 47.826 0.00 0.00 0.00 4.79
4069 5454 3.170717 TGTTCTTAATCACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
4070 5455 3.887621 TGTTCTTAATCACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
4071 5456 8.196378 ACTATATGTTCTTAATCACTCCCTCC 57.804 38.462 0.00 0.00 0.00 4.30
4072 5457 8.861086 TGACTATATGTTCTTAATCACTCCCTC 58.139 37.037 0.00 0.00 0.00 4.30
4073 5458 8.783660 TGACTATATGTTCTTAATCACTCCCT 57.216 34.615 0.00 0.00 0.00 4.20
4074 5459 9.646427 GATGACTATATGTTCTTAATCACTCCC 57.354 37.037 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.