Multiple sequence alignment - TraesCS7D01G332900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G332900 chr7D 100.000 7499 0 0 1 7499 424090156 424097654 0.000000e+00 13849.0
1 TraesCS7D01G332900 chr7D 92.523 107 7 1 2107 2212 318486599 318486493 1.300000e-32 152.0
2 TraesCS7D01G332900 chr7B 93.144 4711 218 41 2517 7187 441503337 441507982 0.000000e+00 6813.0
3 TraesCS7D01G332900 chr7B 90.836 1244 70 21 896 2115 441501862 441503085 0.000000e+00 1626.0
4 TraesCS7D01G332900 chr7B 90.715 657 37 13 182 837 441500978 441501611 0.000000e+00 854.0
5 TraesCS7D01G332900 chr7B 87.010 408 33 3 459 846 640720763 640720356 6.910000e-120 442.0
6 TraesCS7D01G332900 chr7B 85.122 410 41 6 457 846 732602200 732601791 1.170000e-107 401.0
7 TraesCS7D01G332900 chr7B 90.805 261 16 5 2196 2453 441503085 441503340 7.210000e-90 342.0
8 TraesCS7D01G332900 chr7B 85.804 317 33 8 7193 7499 441508502 441508816 7.260000e-85 326.0
9 TraesCS7D01G332900 chr7B 95.109 184 9 0 1 184 441456027 441456210 2.650000e-74 291.0
10 TraesCS7D01G332900 chr7A 85.102 3101 286 89 931 3943 509223643 509220631 0.000000e+00 3005.0
11 TraesCS7D01G332900 chr7A 92.909 1509 70 18 3947 5441 509220468 509218983 0.000000e+00 2159.0
12 TraesCS7D01G332900 chr7A 85.966 1247 116 28 5470 6696 509219015 509217808 0.000000e+00 1279.0
13 TraesCS7D01G332900 chr7A 81.013 316 37 12 7193 7499 509217018 509216717 5.850000e-56 230.0
14 TraesCS7D01G332900 chr7A 84.375 160 16 7 7024 7182 509217615 509217464 1.690000e-31 148.0
15 TraesCS7D01G332900 chr5B 87.136 412 28 7 459 847 356369591 356369182 1.920000e-120 444.0
16 TraesCS7D01G332900 chr5B 85.258 407 39 7 459 845 528937344 528936939 4.220000e-107 399.0
17 TraesCS7D01G332900 chr5B 83.793 290 43 4 82 368 447575518 447575806 9.590000e-69 272.0
18 TraesCS7D01G332900 chr5B 96.907 97 3 0 2107 2203 550925182 550925086 6.020000e-36 163.0
19 TraesCS7D01G332900 chr5B 95.918 98 3 1 2107 2204 24807275 24807179 2.800000e-34 158.0
20 TraesCS7D01G332900 chr3D 87.073 410 31 4 459 846 380180302 380179893 1.920000e-120 444.0
21 TraesCS7D01G332900 chr3D 85.817 416 35 8 455 848 433443727 433443314 3.240000e-113 420.0
22 TraesCS7D01G332900 chrUn 86.829 410 33 6 459 848 358260389 358260797 8.930000e-119 438.0
23 TraesCS7D01G332900 chr1B 86.553 409 35 4 459 847 437539722 437539314 4.160000e-117 433.0
24 TraesCS7D01G332900 chr1B 89.565 115 10 2 2096 2209 102141153 102141266 2.180000e-30 145.0
25 TraesCS7D01G332900 chr2B 85.749 407 39 2 459 846 100027396 100026990 5.410000e-111 412.0
26 TraesCS7D01G332900 chr2B 88.281 256 24 2 596 845 745840337 745840082 1.220000e-77 302.0
27 TraesCS7D01G332900 chr2B 85.106 188 24 4 82 265 177134022 177134209 9.930000e-44 189.0
28 TraesCS7D01G332900 chr2B 78.109 201 31 11 259 456 23324858 23324668 1.710000e-21 115.0
29 TraesCS7D01G332900 chr4D 85.012 407 40 7 459 845 399608304 399607899 1.960000e-105 394.0
30 TraesCS7D01G332900 chr4D 80.000 405 44 19 78 456 434065425 434065818 1.600000e-66 265.0
31 TraesCS7D01G332900 chr4D 96.875 96 3 0 2105 2200 71301592 71301687 2.170000e-35 161.0
32 TraesCS7D01G332900 chr1D 84.672 411 42 6 457 846 461344995 461344585 2.540000e-104 390.0
33 TraesCS7D01G332900 chr1D 86.875 160 18 3 77 234 198740251 198740093 7.730000e-40 176.0
34 TraesCS7D01G332900 chr6D 83.733 375 51 7 458 825 381384421 381384050 5.570000e-91 346.0
35 TraesCS7D01G332900 chr3A 83.389 301 45 5 82 379 736633071 736632773 2.670000e-69 274.0
36 TraesCS7D01G332900 chr3A 86.310 168 21 2 82 247 590715622 590715789 1.660000e-41 182.0
37 TraesCS7D01G332900 chr3B 83.498 303 36 12 78 378 792867506 792867796 3.450000e-68 270.0
38 TraesCS7D01G332900 chr3B 83.113 302 37 13 82 379 707446314 707446023 5.770000e-66 263.0
39 TraesCS7D01G332900 chr3B 97.826 92 2 0 2111 2202 732859132 732859041 7.790000e-35 159.0
40 TraesCS7D01G332900 chr3B 92.035 113 5 4 2105 2215 732859040 732859150 1.010000e-33 156.0
41 TraesCS7D01G332900 chr5A 79.540 391 50 14 92 456 11077914 11077528 1.250000e-62 252.0
42 TraesCS7D01G332900 chr6B 79.241 395 48 18 90 456 537436508 537436120 2.090000e-60 244.0
43 TraesCS7D01G332900 chr6B 84.706 85 10 3 373 454 198965772 198965856 1.730000e-11 82.4
44 TraesCS7D01G332900 chr5D 87.019 208 13 3 459 652 450384292 450384499 9.790000e-54 222.0
45 TraesCS7D01G332900 chr5D 87.952 83 7 3 373 453 484404998 484405079 2.230000e-15 95.3
46 TraesCS7D01G332900 chr2D 96.000 100 3 1 2109 2207 54963881 54963980 2.170000e-35 161.0
47 TraesCS7D01G332900 chr2A 93.333 105 6 1 2106 2210 659614680 659614577 3.620000e-33 154.0
48 TraesCS7D01G332900 chr4A 85.882 85 10 2 373 456 647110819 647110902 1.040000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G332900 chr7D 424090156 424097654 7498 False 13849.0 13849 100.0000 1 7499 1 chr7D.!!$F1 7498
1 TraesCS7D01G332900 chr7B 441500978 441508816 7838 False 1992.2 6813 90.2608 182 7499 5 chr7B.!!$F2 7317
2 TraesCS7D01G332900 chr7A 509216717 509223643 6926 True 1364.2 3005 85.8730 931 7499 5 chr7A.!!$R1 6568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 749 0.099436 GCGCTGGTTCTTTGCATAGG 59.901 55.000 0.00 0.0 0.00 2.57 F
2473 2734 0.250166 GGAACCACGCCAGTTAGTGT 60.250 55.000 0.00 0.0 36.69 3.55 F
2522 2783 1.377229 CGGAGGGGGTGCTTTACAA 59.623 57.895 0.00 0.0 0.00 2.41 F
4130 4599 1.683011 CGGCCAGTTGGAGGATTCAAT 60.683 52.381 2.24 0.0 35.00 2.57 F
5459 5941 1.073284 GTCACAGCTTTACCCTTGGGA 59.927 52.381 13.39 0.0 0.00 4.37 F
6236 6741 1.243902 TTGAAACGGGTGAAGATGCC 58.756 50.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2476 2737 0.177836 CTGCGACACATCACCCCATA 59.822 55.000 0.00 0.0 0.0 2.74 R
4050 4519 1.202758 ACTTCACGCATTCCTTGACCA 60.203 47.619 0.00 0.0 0.0 4.02 R
4520 4991 1.160137 CACTAACACCAGCCTTGCTC 58.840 55.000 0.00 0.0 36.4 4.26 R
5930 6434 0.036010 CAGTCCTTCCATCAACGCCT 60.036 55.000 0.00 0.0 0.0 5.52 R
6385 6891 0.173255 CGGCCACCATCAAACATTCC 59.827 55.000 2.24 0.0 0.0 3.01 R
7130 7644 1.812571 AGATCGCATTTGGGTGTGTTC 59.187 47.619 0.00 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.648725 AACTTATCTAGTTTTAGTGCAGCG 57.351 37.500 0.00 0.00 44.73 5.18
37 38 5.962433 ACTTATCTAGTTTTAGTGCAGCGA 58.038 37.500 0.00 0.00 31.29 4.93
38 39 5.805994 ACTTATCTAGTTTTAGTGCAGCGAC 59.194 40.000 0.00 0.00 31.29 5.19
39 40 3.653539 TCTAGTTTTAGTGCAGCGACA 57.346 42.857 0.00 0.00 0.00 4.35
40 41 3.985008 TCTAGTTTTAGTGCAGCGACAA 58.015 40.909 0.00 0.00 0.00 3.18
41 42 4.373527 TCTAGTTTTAGTGCAGCGACAAA 58.626 39.130 0.00 0.00 0.00 2.83
42 43 3.609103 AGTTTTAGTGCAGCGACAAAG 57.391 42.857 0.00 0.00 0.00 2.77
43 44 2.044135 GTTTTAGTGCAGCGACAAAGC 58.956 47.619 0.00 0.00 37.41 3.51
44 45 0.591170 TTTAGTGCAGCGACAAAGCC 59.409 50.000 0.00 0.00 38.01 4.35
45 46 0.533978 TTAGTGCAGCGACAAAGCCA 60.534 50.000 0.00 0.00 38.01 4.75
46 47 1.227999 TAGTGCAGCGACAAAGCCAC 61.228 55.000 0.00 0.00 38.01 5.01
47 48 2.203195 TGCAGCGACAAAGCCACT 60.203 55.556 0.00 0.00 38.01 4.00
48 49 1.070615 TGCAGCGACAAAGCCACTA 59.929 52.632 0.00 0.00 38.01 2.74
49 50 0.950555 TGCAGCGACAAAGCCACTAG 60.951 55.000 0.00 0.00 38.01 2.57
50 51 1.790387 CAGCGACAAAGCCACTAGC 59.210 57.895 0.00 0.00 44.25 3.42
51 52 1.376037 AGCGACAAAGCCACTAGCC 60.376 57.895 0.00 0.00 45.47 3.93
52 53 2.740714 GCGACAAAGCCACTAGCCG 61.741 63.158 0.00 0.00 45.47 5.52
53 54 1.374252 CGACAAAGCCACTAGCCGT 60.374 57.895 0.00 0.00 45.47 5.68
54 55 0.108992 CGACAAAGCCACTAGCCGTA 60.109 55.000 0.00 0.00 45.47 4.02
55 56 1.670674 CGACAAAGCCACTAGCCGTAA 60.671 52.381 0.00 0.00 45.47 3.18
56 57 2.419667 GACAAAGCCACTAGCCGTAAA 58.580 47.619 0.00 0.00 45.47 2.01
57 58 2.809696 GACAAAGCCACTAGCCGTAAAA 59.190 45.455 0.00 0.00 45.47 1.52
58 59 3.418047 ACAAAGCCACTAGCCGTAAAAT 58.582 40.909 0.00 0.00 45.47 1.82
59 60 3.190535 ACAAAGCCACTAGCCGTAAAATG 59.809 43.478 0.00 0.00 45.47 2.32
60 61 1.379527 AGCCACTAGCCGTAAAATGC 58.620 50.000 0.00 0.00 45.47 3.56
61 62 0.380733 GCCACTAGCCGTAAAATGCC 59.619 55.000 0.00 0.00 34.35 4.40
62 63 2.017113 GCCACTAGCCGTAAAATGCCT 61.017 52.381 0.00 0.00 34.35 4.75
63 64 2.743838 GCCACTAGCCGTAAAATGCCTA 60.744 50.000 0.00 0.00 34.35 3.93
64 65 2.870411 CCACTAGCCGTAAAATGCCTAC 59.130 50.000 0.00 0.00 0.00 3.18
65 66 3.527533 CACTAGCCGTAAAATGCCTACA 58.472 45.455 0.00 0.00 0.00 2.74
66 67 3.308866 CACTAGCCGTAAAATGCCTACAC 59.691 47.826 0.00 0.00 0.00 2.90
67 68 2.483014 AGCCGTAAAATGCCTACACA 57.517 45.000 0.00 0.00 0.00 3.72
68 69 2.356135 AGCCGTAAAATGCCTACACAG 58.644 47.619 0.00 0.00 0.00 3.66
69 70 2.027561 AGCCGTAAAATGCCTACACAGA 60.028 45.455 0.00 0.00 0.00 3.41
70 71 2.943033 GCCGTAAAATGCCTACACAGAT 59.057 45.455 0.00 0.00 0.00 2.90
71 72 3.377172 GCCGTAAAATGCCTACACAGATT 59.623 43.478 0.00 0.00 0.00 2.40
72 73 4.573201 GCCGTAAAATGCCTACACAGATTA 59.427 41.667 0.00 0.00 0.00 1.75
73 74 5.277345 GCCGTAAAATGCCTACACAGATTAG 60.277 44.000 0.00 0.00 0.00 1.73
74 75 5.236478 CCGTAAAATGCCTACACAGATTAGG 59.764 44.000 0.00 0.00 39.45 2.69
75 76 5.815740 CGTAAAATGCCTACACAGATTAGGT 59.184 40.000 0.00 0.00 38.77 3.08
76 77 6.315393 CGTAAAATGCCTACACAGATTAGGTT 59.685 38.462 0.00 0.00 38.77 3.50
77 78 7.148306 CGTAAAATGCCTACACAGATTAGGTTT 60.148 37.037 0.00 0.00 38.77 3.27
78 79 7.539034 AAAATGCCTACACAGATTAGGTTTT 57.461 32.000 0.00 0.00 38.77 2.43
79 80 7.539034 AAATGCCTACACAGATTAGGTTTTT 57.461 32.000 0.00 0.00 38.77 1.94
80 81 5.957842 TGCCTACACAGATTAGGTTTTTG 57.042 39.130 0.00 0.00 38.77 2.44
81 82 4.764823 TGCCTACACAGATTAGGTTTTTGG 59.235 41.667 0.00 0.00 38.77 3.28
82 83 5.007682 GCCTACACAGATTAGGTTTTTGGA 58.992 41.667 0.00 0.00 38.77 3.53
83 84 5.475564 GCCTACACAGATTAGGTTTTTGGAA 59.524 40.000 0.00 0.00 38.77 3.53
84 85 6.569801 GCCTACACAGATTAGGTTTTTGGAAC 60.570 42.308 0.00 0.00 38.77 3.62
85 86 5.784578 ACACAGATTAGGTTTTTGGAACC 57.215 39.130 0.00 0.00 40.58 3.62
86 87 5.205056 ACACAGATTAGGTTTTTGGAACCA 58.795 37.500 10.28 0.00 42.69 3.67
87 88 5.659079 ACACAGATTAGGTTTTTGGAACCAA 59.341 36.000 10.28 1.83 42.69 3.67
88 89 5.983118 CACAGATTAGGTTTTTGGAACCAAC 59.017 40.000 5.73 0.00 42.69 3.77
89 90 5.897250 ACAGATTAGGTTTTTGGAACCAACT 59.103 36.000 5.73 3.16 42.69 3.16
90 91 6.040504 ACAGATTAGGTTTTTGGAACCAACTC 59.959 38.462 5.73 3.89 42.69 3.01
91 92 5.538813 AGATTAGGTTTTTGGAACCAACTCC 59.461 40.000 5.73 8.74 42.69 3.85
92 93 3.108847 AGGTTTTTGGAACCAACTCCA 57.891 42.857 5.73 0.00 43.99 3.86
93 94 2.764010 AGGTTTTTGGAACCAACTCCAC 59.236 45.455 5.73 1.42 45.37 4.02
94 95 2.480587 GGTTTTTGGAACCAACTCCACG 60.481 50.000 5.73 0.00 45.37 4.94
95 96 2.131776 TTTTGGAACCAACTCCACGT 57.868 45.000 5.73 0.00 45.37 4.49
96 97 2.131776 TTTGGAACCAACTCCACGTT 57.868 45.000 5.73 0.00 45.37 3.99
97 98 3.278668 TTTGGAACCAACTCCACGTTA 57.721 42.857 5.73 0.00 45.37 3.18
98 99 3.278668 TTGGAACCAACTCCACGTTAA 57.721 42.857 1.83 0.00 45.37 2.01
99 100 3.495434 TGGAACCAACTCCACGTTAAT 57.505 42.857 0.00 0.00 40.71 1.40
100 101 3.142951 TGGAACCAACTCCACGTTAATG 58.857 45.455 0.00 0.00 40.71 1.90
101 102 3.143728 GGAACCAACTCCACGTTAATGT 58.856 45.455 0.00 0.00 35.36 2.71
102 103 4.202336 TGGAACCAACTCCACGTTAATGTA 60.202 41.667 0.00 0.00 40.71 2.29
103 104 4.152938 GGAACCAACTCCACGTTAATGTAC 59.847 45.833 0.00 0.00 35.36 2.90
104 105 4.612264 ACCAACTCCACGTTAATGTACT 57.388 40.909 0.00 0.00 33.63 2.73
105 106 4.964593 ACCAACTCCACGTTAATGTACTT 58.035 39.130 0.00 0.00 33.63 2.24
106 107 6.100404 ACCAACTCCACGTTAATGTACTTA 57.900 37.500 0.00 0.00 33.63 2.24
107 108 5.928264 ACCAACTCCACGTTAATGTACTTAC 59.072 40.000 0.00 0.00 33.63 2.34
108 109 5.349543 CCAACTCCACGTTAATGTACTTACC 59.650 44.000 0.00 0.00 33.63 2.85
109 110 5.726980 ACTCCACGTTAATGTACTTACCA 57.273 39.130 0.00 0.00 0.00 3.25
110 111 6.100404 ACTCCACGTTAATGTACTTACCAA 57.900 37.500 0.00 0.00 0.00 3.67
111 112 6.523840 ACTCCACGTTAATGTACTTACCAAA 58.476 36.000 0.00 0.00 0.00 3.28
112 113 6.424812 ACTCCACGTTAATGTACTTACCAAAC 59.575 38.462 0.00 0.00 0.00 2.93
113 114 6.523840 TCCACGTTAATGTACTTACCAAACT 58.476 36.000 0.00 0.00 0.00 2.66
114 115 6.991531 TCCACGTTAATGTACTTACCAAACTT 59.008 34.615 0.00 0.00 0.00 2.66
115 116 7.171337 TCCACGTTAATGTACTTACCAAACTTC 59.829 37.037 0.00 0.00 0.00 3.01
116 117 7.172019 CCACGTTAATGTACTTACCAAACTTCT 59.828 37.037 0.00 0.00 0.00 2.85
117 118 8.219105 CACGTTAATGTACTTACCAAACTTCTC 58.781 37.037 0.00 0.00 0.00 2.87
118 119 7.927629 ACGTTAATGTACTTACCAAACTTCTCA 59.072 33.333 0.00 0.00 0.00 3.27
119 120 8.932791 CGTTAATGTACTTACCAAACTTCTCAT 58.067 33.333 0.00 0.00 0.00 2.90
122 123 8.918202 AATGTACTTACCAAACTTCTCATCAA 57.082 30.769 0.00 0.00 0.00 2.57
123 124 8.918202 ATGTACTTACCAAACTTCTCATCAAA 57.082 30.769 0.00 0.00 0.00 2.69
124 125 8.740123 TGTACTTACCAAACTTCTCATCAAAA 57.260 30.769 0.00 0.00 0.00 2.44
125 126 8.617809 TGTACTTACCAAACTTCTCATCAAAAC 58.382 33.333 0.00 0.00 0.00 2.43
126 127 7.639113 ACTTACCAAACTTCTCATCAAAACA 57.361 32.000 0.00 0.00 0.00 2.83
127 128 8.237811 ACTTACCAAACTTCTCATCAAAACAT 57.762 30.769 0.00 0.00 0.00 2.71
128 129 9.349713 ACTTACCAAACTTCTCATCAAAACATA 57.650 29.630 0.00 0.00 0.00 2.29
130 131 9.959749 TTACCAAACTTCTCATCAAAACATAAC 57.040 29.630 0.00 0.00 0.00 1.89
131 132 8.237811 ACCAAACTTCTCATCAAAACATAACT 57.762 30.769 0.00 0.00 0.00 2.24
132 133 9.349713 ACCAAACTTCTCATCAAAACATAACTA 57.650 29.630 0.00 0.00 0.00 2.24
145 146 8.902806 TCAAAACATAACTAAATCATAGGCAGG 58.097 33.333 0.00 0.00 0.00 4.85
146 147 8.902806 CAAAACATAACTAAATCATAGGCAGGA 58.097 33.333 0.00 0.00 0.00 3.86
147 148 9.646522 AAAACATAACTAAATCATAGGCAGGAT 57.353 29.630 0.00 0.00 0.00 3.24
148 149 9.646522 AAACATAACTAAATCATAGGCAGGATT 57.353 29.630 0.00 0.00 36.76 3.01
149 150 9.646522 AACATAACTAAATCATAGGCAGGATTT 57.353 29.630 13.14 13.14 44.81 2.17
150 151 9.071276 ACATAACTAAATCATAGGCAGGATTTG 57.929 33.333 16.33 10.96 43.16 2.32
151 152 9.288576 CATAACTAAATCATAGGCAGGATTTGA 57.711 33.333 16.33 0.00 43.16 2.69
154 155 9.866655 AACTAAATCATAGGCAGGATTTGATAA 57.133 29.630 16.33 2.01 43.16 1.75
155 156 9.866655 ACTAAATCATAGGCAGGATTTGATAAA 57.133 29.630 16.33 0.00 43.16 1.40
157 158 8.537728 AAATCATAGGCAGGATTTGATAAACA 57.462 30.769 9.32 0.00 42.08 2.83
158 159 8.716674 AATCATAGGCAGGATTTGATAAACAT 57.283 30.769 0.00 0.00 31.26 2.71
159 160 8.716674 ATCATAGGCAGGATTTGATAAACATT 57.283 30.769 0.00 0.00 0.00 2.71
160 161 8.537728 TCATAGGCAGGATTTGATAAACATTT 57.462 30.769 0.00 0.00 0.00 2.32
161 162 9.639563 TCATAGGCAGGATTTGATAAACATTTA 57.360 29.630 0.00 0.00 0.00 1.40
165 166 9.603921 AGGCAGGATTTGATAAACATTTATTTG 57.396 29.630 0.00 0.00 33.72 2.32
166 167 8.337532 GGCAGGATTTGATAAACATTTATTTGC 58.662 33.333 0.00 0.00 33.72 3.68
167 168 8.881743 GCAGGATTTGATAAACATTTATTTGCA 58.118 29.630 0.00 0.00 33.72 4.08
169 170 9.941325 AGGATTTGATAAACATTTATTTGCACA 57.059 25.926 0.00 0.00 33.72 4.57
174 175 7.893824 TGATAAACATTTATTTGCACAATCGC 58.106 30.769 0.00 0.00 33.72 4.58
175 176 7.543520 TGATAAACATTTATTTGCACAATCGCA 59.456 29.630 0.00 0.00 35.34 5.10
176 177 6.724694 AAACATTTATTTGCACAATCGCAT 57.275 29.167 0.00 0.00 42.62 4.73
177 178 6.724694 AACATTTATTTGCACAATCGCATT 57.275 29.167 0.00 0.00 42.62 3.56
178 179 7.824704 AACATTTATTTGCACAATCGCATTA 57.175 28.000 0.00 0.00 42.62 1.90
179 180 7.824704 ACATTTATTTGCACAATCGCATTAA 57.175 28.000 0.00 0.00 42.62 1.40
180 181 8.422973 ACATTTATTTGCACAATCGCATTAAT 57.577 26.923 0.00 0.00 42.62 1.40
183 184 7.601881 TTATTTGCACAATCGCATTAATACG 57.398 32.000 1.44 1.44 42.62 3.06
186 187 3.001838 TGCACAATCGCATTAATACGGAC 59.998 43.478 8.18 0.00 36.86 4.79
203 204 3.259876 ACGGACAGGTAATCACAAGCTAA 59.740 43.478 0.00 0.00 0.00 3.09
204 205 4.081087 ACGGACAGGTAATCACAAGCTAAT 60.081 41.667 0.00 0.00 0.00 1.73
307 308 3.077556 CCTGCTAGGCGGAGTGGT 61.078 66.667 0.00 0.00 37.02 4.16
329 330 5.449999 GGTTCGTCCAACATTCCATATTTCC 60.450 44.000 0.00 0.00 36.61 3.13
336 337 4.184649 ACATTCCATATTTCCCCCTGAC 57.815 45.455 0.00 0.00 0.00 3.51
340 341 3.053077 TCCATATTTCCCCCTGACGATT 58.947 45.455 0.00 0.00 0.00 3.34
368 369 4.846779 TGAAAAGCGCCTTAATTGTCTT 57.153 36.364 2.29 0.00 0.00 3.01
476 478 3.792401 TGGTTGTCTACACAAGTGACAG 58.208 45.455 7.28 4.01 43.42 3.51
480 482 2.224042 TGTCTACACAAGTGACAGCTGG 60.224 50.000 19.93 0.72 33.74 4.85
483 485 1.959042 ACACAAGTGACAGCTGGAAG 58.041 50.000 19.93 4.07 0.00 3.46
545 547 2.924290 GTTCTGATTTTCTCCTCCGACG 59.076 50.000 0.00 0.00 0.00 5.12
590 592 1.736645 CGGAGTTCGATGGCGTGTT 60.737 57.895 0.00 0.00 42.43 3.32
592 594 1.683790 GGAGTTCGATGGCGTGTTCG 61.684 60.000 0.00 0.00 38.98 3.95
611 613 1.128692 CGCGGTCTGATTCTTTCAACC 59.871 52.381 0.00 0.00 34.66 3.77
648 650 4.134563 TCAGGCAAACTACTTTGGAGTTC 58.865 43.478 0.00 0.00 37.78 3.01
656 658 4.313282 ACTACTTTGGAGTTCCGTAAAGC 58.687 43.478 9.64 0.00 39.43 3.51
668 670 1.061131 CCGTAAAGCTGCTGATCAACG 59.939 52.381 1.35 8.98 0.00 4.10
672 674 1.376543 AAGCTGCTGATCAACGATGG 58.623 50.000 1.35 0.00 0.00 3.51
695 697 2.202492 CGTCGAGCTCGGGTGAAG 60.202 66.667 33.98 14.57 40.29 3.02
709 711 3.403968 GGGTGAAGAGTGTCTCCTTTTC 58.596 50.000 0.00 0.00 32.74 2.29
717 719 2.633481 AGTGTCTCCTTTTCCTTAGCGT 59.367 45.455 0.00 0.00 0.00 5.07
732 734 4.457496 CGTGGAGGGACATGCGCT 62.457 66.667 9.73 6.45 43.30 5.92
747 749 0.099436 GCGCTGGTTCTTTGCATAGG 59.901 55.000 0.00 0.00 0.00 2.57
753 755 5.334414 CGCTGGTTCTTTGCATAGGATTATC 60.334 44.000 4.23 0.00 0.00 1.75
771 773 7.740805 GGATTATCCTATCTTTTCAGTCCTGT 58.259 38.462 3.59 0.00 32.53 4.00
772 774 8.871125 GGATTATCCTATCTTTTCAGTCCTGTA 58.129 37.037 3.59 0.00 32.53 2.74
883 1035 3.121738 GCACGGGCAAATACCTAGTAT 57.878 47.619 3.77 0.00 40.72 2.12
884 1036 4.261578 GCACGGGCAAATACCTAGTATA 57.738 45.455 3.77 0.00 40.72 1.47
886 1038 4.689345 GCACGGGCAAATACCTAGTATAAG 59.311 45.833 3.77 0.00 40.72 1.73
887 1039 5.510179 GCACGGGCAAATACCTAGTATAAGA 60.510 44.000 3.77 0.00 40.72 2.10
888 1040 6.698380 CACGGGCAAATACCTAGTATAAGAT 58.302 40.000 0.00 0.00 0.00 2.40
889 1041 6.812160 CACGGGCAAATACCTAGTATAAGATC 59.188 42.308 0.00 0.00 0.00 2.75
891 1043 7.015877 ACGGGCAAATACCTAGTATAAGATCAA 59.984 37.037 0.00 0.00 0.00 2.57
892 1044 7.876068 CGGGCAAATACCTAGTATAAGATCAAA 59.124 37.037 0.00 0.00 0.00 2.69
893 1045 9.000486 GGGCAAATACCTAGTATAAGATCAAAC 58.000 37.037 0.00 0.00 0.00 2.93
1100 1295 3.885521 GCAGCAAGCATCCGCCTC 61.886 66.667 0.00 0.00 44.79 4.70
1110 1305 1.074167 ATCCGCCTCCCCATTCTCT 60.074 57.895 0.00 0.00 0.00 3.10
1266 1467 3.961414 TTTCCGCGCCTCCCCTTT 61.961 61.111 0.00 0.00 0.00 3.11
1276 1477 1.133761 GCCTCCCCTTTCCCTGTATTC 60.134 57.143 0.00 0.00 0.00 1.75
1293 1515 0.522180 TTCTCCGTGTCTTCTCGCTC 59.478 55.000 0.00 0.00 0.00 5.03
1314 1536 4.362677 TCCTAGGTTTTCAGATAGGCAGT 58.637 43.478 9.08 0.00 35.71 4.40
1316 1538 3.356529 AGGTTTTCAGATAGGCAGTGG 57.643 47.619 0.00 0.00 0.00 4.00
1329 1552 0.250467 GCAGTGGCTTGAACTCCTGA 60.250 55.000 0.00 0.00 36.96 3.86
1335 1558 1.363744 GCTTGAACTCCTGATGTCGG 58.636 55.000 0.00 0.00 0.00 4.79
1346 1569 3.576982 TCCTGATGTCGGAGTTTACTTGT 59.423 43.478 0.00 0.00 0.00 3.16
1351 1574 3.117794 TGTCGGAGTTTACTTGTTCACG 58.882 45.455 0.00 0.00 0.00 4.35
1370 1596 1.401552 CGCATGAATCCACGATTTGGT 59.598 47.619 0.00 0.00 46.97 3.67
1384 1610 4.111916 CGATTTGGTTTTGCTTGTTCAGT 58.888 39.130 0.00 0.00 0.00 3.41
1416 1642 8.699130 TGTTTCTTTGCTCTGATCTGATCTATA 58.301 33.333 17.82 3.65 0.00 1.31
1417 1643 9.709495 GTTTCTTTGCTCTGATCTGATCTATAT 57.291 33.333 17.82 0.00 0.00 0.86
1419 1645 8.647256 TCTTTGCTCTGATCTGATCTATATCA 57.353 34.615 17.82 7.43 39.87 2.15
1436 1662 8.812147 TCTATATCATTTCTGTTTATTCGCGT 57.188 30.769 5.77 0.00 0.00 6.01
1437 1663 9.256477 TCTATATCATTTCTGTTTATTCGCGTT 57.744 29.630 5.77 0.00 0.00 4.84
1464 1690 8.912787 TTTTCTTCTAATGTTGTGCGTTTTTA 57.087 26.923 0.00 0.00 0.00 1.52
1475 1701 5.814314 TGTGCGTTTTTATTTCGATTTGG 57.186 34.783 0.00 0.00 0.00 3.28
1499 1725 1.474879 GAGGACTCGTTGAAGAGGGAG 59.525 57.143 0.00 0.00 42.31 4.30
1502 1728 0.882474 ACTCGTTGAAGAGGGAGTCG 59.118 55.000 0.00 0.00 42.31 4.18
1576 1802 3.726607 AGTCTTGAGCTCTGTTTCACTG 58.273 45.455 16.19 0.00 0.00 3.66
1641 1867 1.334243 ACTCGCTAGATCGTAGCCAAC 59.666 52.381 14.61 0.00 37.26 3.77
1651 1877 1.289109 CGTAGCCAACCAGTTCACCG 61.289 60.000 0.00 0.00 0.00 4.94
1673 1899 3.120321 AGGATGCACGTTTCACTGTTA 57.880 42.857 0.00 0.00 0.00 2.41
1675 1901 4.072131 AGGATGCACGTTTCACTGTTAAT 58.928 39.130 0.00 0.00 0.00 1.40
1681 1910 2.292292 ACGTTTCACTGTTAATGCCACC 59.708 45.455 0.00 0.00 0.00 4.61
1722 1951 1.759445 TCCTAGCCAAGATGTCAGAGC 59.241 52.381 0.00 0.00 0.00 4.09
1821 2062 4.851639 ACCTTCAATTGACTATCTGGCT 57.148 40.909 7.89 0.00 0.00 4.75
1826 2067 5.885230 TCAATTGACTATCTGGCTGTTTG 57.115 39.130 3.38 0.00 0.00 2.93
1827 2068 4.701651 TCAATTGACTATCTGGCTGTTTGG 59.298 41.667 3.38 0.00 0.00 3.28
1828 2069 2.113860 TGACTATCTGGCTGTTTGGC 57.886 50.000 0.00 0.00 42.18 4.52
1861 2102 0.671251 TTTGCCACTGTTTTAGCCCG 59.329 50.000 0.00 0.00 0.00 6.13
1877 2118 4.015872 AGCCCGACAATCAAGAAGTTTA 57.984 40.909 0.00 0.00 0.00 2.01
1931 2173 6.923670 TCATTTACCTGTATCTCCTCCTAGT 58.076 40.000 0.00 0.00 0.00 2.57
1932 2174 6.778069 TCATTTACCTGTATCTCCTCCTAGTG 59.222 42.308 0.00 0.00 0.00 2.74
1933 2175 5.728937 TTACCTGTATCTCCTCCTAGTGT 57.271 43.478 0.00 0.00 0.00 3.55
1948 2195 6.483640 CCTCCTAGTGTTGGTAAATCTAATGC 59.516 42.308 0.00 0.00 0.00 3.56
2069 2316 8.976471 CATACTCTTAACATATTCTCTGCACTG 58.024 37.037 0.00 0.00 0.00 3.66
2071 2318 7.390027 ACTCTTAACATATTCTCTGCACTGTT 58.610 34.615 0.00 0.00 0.00 3.16
2123 2371 4.141088 TCCATACATAGTACTCCCTCCGTT 60.141 45.833 0.00 0.00 0.00 4.44
2124 2372 4.217983 CCATACATAGTACTCCCTCCGTTC 59.782 50.000 0.00 0.00 0.00 3.95
2132 2380 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2134 2382 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2138 2386 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2139 2387 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2140 2388 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2141 2389 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2142 2390 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2144 2392 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2146 2394 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2147 2395 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2153 2401 3.821033 AGATGACCCAACTTTGTGCTAAC 59.179 43.478 0.00 0.00 0.00 2.34
2154 2402 3.290948 TGACCCAACTTTGTGCTAACT 57.709 42.857 0.00 0.00 0.00 2.24
2156 2404 4.020543 TGACCCAACTTTGTGCTAACTTT 58.979 39.130 0.00 0.00 0.00 2.66
2157 2405 5.194432 TGACCCAACTTTGTGCTAACTTTA 58.806 37.500 0.00 0.00 0.00 1.85
2158 2406 5.298276 TGACCCAACTTTGTGCTAACTTTAG 59.702 40.000 0.00 0.00 0.00 1.85
2159 2407 5.198207 ACCCAACTTTGTGCTAACTTTAGT 58.802 37.500 0.00 0.00 33.32 2.24
2160 2408 6.358991 ACCCAACTTTGTGCTAACTTTAGTA 58.641 36.000 0.00 0.00 33.32 1.82
2161 2409 6.261603 ACCCAACTTTGTGCTAACTTTAGTAC 59.738 38.462 9.56 9.56 43.76 2.73
2170 2418 6.665465 GTGCTAACTTTAGTACAAAGTTGGG 58.335 40.000 27.85 23.13 46.41 4.12
2173 2421 6.484308 GCTAACTTTAGTACAAAGTTGGGTCA 59.516 38.462 27.85 16.53 46.41 4.02
2175 2423 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
2184 2432 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2187 2435 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2192 2440 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2204 2452 3.367806 GGAACGGAGGGAGTACTTGTTAC 60.368 52.174 0.00 0.00 0.00 2.50
2215 2464 5.242393 GGAGTACTTGTTACCAGAGTACACA 59.758 44.000 16.92 0.00 45.05 3.72
2217 2466 6.510536 AGTACTTGTTACCAGAGTACACAAC 58.489 40.000 16.92 0.00 45.05 3.32
2228 2477 3.056821 AGAGTACACAACGATAGCAAGCA 60.057 43.478 0.00 0.00 42.67 3.91
2383 2642 7.584108 TGTATCAACAGCTTTAACTCATTGTG 58.416 34.615 0.00 0.00 0.00 3.33
2390 2651 8.628882 ACAGCTTTAACTCATTGTGTTTTTAC 57.371 30.769 9.18 0.00 0.00 2.01
2416 2677 7.099266 TCCCTTAATTGCACAACTATCATTG 57.901 36.000 0.00 0.00 35.59 2.82
2442 2703 1.717032 TTGGGACAGTACAGTGCTCT 58.283 50.000 9.67 0.00 42.39 4.09
2455 2716 9.847706 CAGTACAGTGCTCTATATAGTTTATGG 57.152 37.037 9.58 0.79 0.00 2.74
2461 2722 8.368668 AGTGCTCTATATAGTTTATGGAACCAC 58.631 37.037 9.58 8.18 39.13 4.16
2463 2724 6.310711 GCTCTATATAGTTTATGGAACCACGC 59.689 42.308 9.58 0.00 39.13 5.34
2469 2730 3.075884 GTTTATGGAACCACGCCAGTTA 58.924 45.455 0.00 0.00 39.11 2.24
2470 2731 2.684001 TATGGAACCACGCCAGTTAG 57.316 50.000 0.00 0.00 39.11 2.34
2473 2734 0.250166 GGAACCACGCCAGTTAGTGT 60.250 55.000 0.00 0.00 36.69 3.55
2476 2737 3.332034 GAACCACGCCAGTTAGTGTAAT 58.668 45.455 0.00 0.00 36.69 1.89
2482 2743 3.181458 ACGCCAGTTAGTGTAATATGGGG 60.181 47.826 12.53 12.53 41.67 4.96
2489 2750 6.483307 CAGTTAGTGTAATATGGGGTGATGTG 59.517 42.308 0.00 0.00 0.00 3.21
2492 2753 3.807622 GTGTAATATGGGGTGATGTGTCG 59.192 47.826 0.00 0.00 0.00 4.35
2497 2758 1.448540 GGGGTGATGTGTCGCAGAG 60.449 63.158 0.00 0.00 36.95 3.35
2501 2762 2.464865 GGTGATGTGTCGCAGAGTATC 58.535 52.381 0.00 0.00 36.95 2.24
2502 2763 2.112522 GTGATGTGTCGCAGAGTATCG 58.887 52.381 0.00 0.00 42.67 2.92
2512 2773 3.303928 GAGTATCGGCGGAGGGGG 61.304 72.222 7.21 0.00 0.00 5.40
2522 2783 1.377229 CGGAGGGGGTGCTTTACAA 59.623 57.895 0.00 0.00 0.00 2.41
2556 2817 6.195141 ACAAATGTGTCGAGGGTAGATCCC 62.195 50.000 0.00 0.00 45.63 3.85
2655 2916 5.466393 GGCTTATTTGTGTCAAAATGCTTGT 59.534 36.000 0.00 0.00 32.16 3.16
2668 2929 6.972328 TCAAAATGCTTGTGTCTTGTACTTTC 59.028 34.615 0.00 0.00 0.00 2.62
2703 2964 6.764308 ACTTCACATCTGAAATTACCATGG 57.236 37.500 11.19 11.19 35.92 3.66
2716 2977 1.935799 ACCATGGGTAATTGCTTGCA 58.064 45.000 18.09 0.00 32.11 4.08
2772 3054 8.576442 CACCACTCTGGAGTTAATTTTACATTT 58.424 33.333 0.00 0.00 40.96 2.32
3130 3417 4.725359 TGATGTTTTCTGTGATGCATTCG 58.275 39.130 0.00 0.00 0.00 3.34
3240 3529 7.407337 CGAGGTCAATAAACTTTGCTATAACC 58.593 38.462 0.00 0.00 0.00 2.85
3241 3530 7.065324 CGAGGTCAATAAACTTTGCTATAACCA 59.935 37.037 0.00 0.00 0.00 3.67
3243 3532 8.686334 AGGTCAATAAACTTTGCTATAACCATG 58.314 33.333 0.00 0.00 0.00 3.66
3267 3556 8.463930 TGAATTCTGTTTCTGGTCAAACTAAT 57.536 30.769 7.05 0.00 37.20 1.73
3365 3673 8.932791 TCTTTGTAGCTAAGTGTACTAAATTGC 58.067 33.333 0.00 0.00 0.00 3.56
3366 3674 7.605410 TTGTAGCTAAGTGTACTAAATTGCC 57.395 36.000 0.00 0.00 0.00 4.52
3377 3685 4.519540 ACTAAATTGCCGCACTTCAAAT 57.480 36.364 0.00 0.00 0.00 2.32
3387 3695 5.102313 GCCGCACTTCAAATTTTAAGCTAT 58.898 37.500 11.24 0.00 0.00 2.97
3433 3741 5.950544 TCAGTAGCCAGGAAGCTTATTTA 57.049 39.130 0.00 0.00 41.41 1.40
3538 3846 3.452627 AGAACTACCATCCCACTGTCATC 59.547 47.826 0.00 0.00 0.00 2.92
3564 3872 4.355437 CGAGGTAGTTACTTGATGCTCAG 58.645 47.826 0.00 0.00 0.00 3.35
3565 3873 4.116238 GAGGTAGTTACTTGATGCTCAGC 58.884 47.826 0.00 0.00 0.00 4.26
3568 3876 5.422331 AGGTAGTTACTTGATGCTCAGCTTA 59.578 40.000 0.00 0.00 0.00 3.09
3570 3878 7.287927 AGGTAGTTACTTGATGCTCAGCTTATA 59.712 37.037 0.00 0.00 0.00 0.98
3765 4073 6.906157 ACATTGTCATTGTTCTTCTGGAAT 57.094 33.333 0.00 0.00 36.24 3.01
3978 4447 9.659135 TCACTTGATGGGATAAATTTATGGATT 57.341 29.630 15.39 0.00 0.00 3.01
4130 4599 1.683011 CGGCCAGTTGGAGGATTCAAT 60.683 52.381 2.24 0.00 35.00 2.57
4327 4796 6.204852 TCAAATTCTCCTGCCCATATGTAT 57.795 37.500 1.24 0.00 0.00 2.29
4337 4806 5.470098 CCTGCCCATATGTATTGTGAACTAC 59.530 44.000 1.24 0.00 0.00 2.73
4520 4991 5.918576 CAGTGACATGGCTATGCATTATTTG 59.081 40.000 10.37 0.00 37.85 2.32
4562 5033 4.737055 GCAATCCGTAGACTTAGGAAGACC 60.737 50.000 3.17 0.00 37.62 3.85
4852 5323 3.845781 AGAACTGCTCTCAACCTTTCA 57.154 42.857 0.00 0.00 0.00 2.69
4854 5325 2.262423 ACTGCTCTCAACCTTTCACC 57.738 50.000 0.00 0.00 0.00 4.02
4981 5452 6.049263 ACACTAAAGCAAAAGAGTTCTTCG 57.951 37.500 0.00 0.00 34.61 3.79
5060 5531 5.520748 AATGAAGTCATTTAGGTGGAGGT 57.479 39.130 0.54 0.00 43.48 3.85
5096 5567 2.237643 ACACAAGTCCACACTACCACAA 59.762 45.455 0.00 0.00 30.14 3.33
5117 5588 9.128107 CCACAACATACTGAATAAAATGTGTTC 57.872 33.333 0.00 0.00 35.17 3.18
5138 5610 1.489481 TTGTGTGTTTGGGGCATTGA 58.511 45.000 0.00 0.00 0.00 2.57
5200 5676 9.646427 AGTATCTGATTACTCTCTGTTTGTTTC 57.354 33.333 0.00 0.00 0.00 2.78
5203 5679 9.646427 ATCTGATTACTCTCTGTTTGTTTCTAC 57.354 33.333 0.00 0.00 0.00 2.59
5323 5799 5.339282 GCTCCAGGGAAAGGTAATAACTCTT 60.339 44.000 0.00 0.00 0.00 2.85
5367 5843 5.712917 TCCAGTGACCTTGTTAAAAAGTTGT 59.287 36.000 4.68 0.00 0.00 3.32
5369 5845 6.349777 CCAGTGACCTTGTTAAAAAGTTGTCA 60.350 38.462 11.39 11.39 30.63 3.58
5399 5875 7.149202 AGGGAGTCCAGCATTTTATATACAA 57.851 36.000 12.30 0.00 34.83 2.41
5449 5931 3.760580 AGCTAGAAGTGTCACAGCTTT 57.239 42.857 9.20 0.00 39.92 3.51
5451 5933 4.561105 AGCTAGAAGTGTCACAGCTTTAC 58.439 43.478 9.20 0.00 39.92 2.01
5452 5934 3.680458 GCTAGAAGTGTCACAGCTTTACC 59.320 47.826 5.62 0.00 33.48 2.85
5453 5935 3.127425 AGAAGTGTCACAGCTTTACCC 57.873 47.619 5.62 0.00 0.00 3.69
5458 5940 1.202879 TGTCACAGCTTTACCCTTGGG 60.203 52.381 3.77 3.77 0.00 4.12
5459 5941 1.073284 GTCACAGCTTTACCCTTGGGA 59.927 52.381 13.39 0.00 0.00 4.37
5460 5942 1.073284 TCACAGCTTTACCCTTGGGAC 59.927 52.381 13.39 0.00 0.00 4.46
5462 5944 1.780919 ACAGCTTTACCCTTGGGACTT 59.219 47.619 13.39 0.00 0.00 3.01
5464 5946 3.396611 ACAGCTTTACCCTTGGGACTTAA 59.603 43.478 13.39 0.00 0.00 1.85
5465 5947 4.010349 CAGCTTTACCCTTGGGACTTAAG 58.990 47.826 13.39 0.00 0.00 1.85
5466 5948 3.914435 AGCTTTACCCTTGGGACTTAAGA 59.086 43.478 13.39 0.00 0.00 2.10
5467 5949 4.540502 AGCTTTACCCTTGGGACTTAAGAT 59.459 41.667 13.39 5.89 0.00 2.40
5469 5951 5.339282 GCTTTACCCTTGGGACTTAAGATCT 60.339 44.000 13.39 0.00 0.00 2.75
5514 5996 2.152016 GGAAGTGTCACAGCTTTACCC 58.848 52.381 5.62 0.00 0.00 3.69
5528 6010 2.859165 TTACCCTTGGACTTGAGCTG 57.141 50.000 0.00 0.00 0.00 4.24
5548 6030 5.420104 AGCTGTGGAAATTGCTTAGCTTTAT 59.580 36.000 5.60 0.00 36.72 1.40
5552 6034 7.090173 TGTGGAAATTGCTTAGCTTTATGTTC 58.910 34.615 5.60 1.11 0.00 3.18
5656 6139 8.854614 AGCTTTGATACAGTACTTCAAGATTT 57.145 30.769 8.17 0.00 31.54 2.17
5704 6187 8.494433 ACTGTGGGATTATCTACAACAATACAT 58.506 33.333 0.00 0.00 0.00 2.29
5705 6188 8.675705 TGTGGGATTATCTACAACAATACATG 57.324 34.615 0.00 0.00 0.00 3.21
5724 6207 4.630069 ACATGTAACGAACTGCATTCCTAC 59.370 41.667 0.00 0.00 33.26 3.18
5755 6238 4.158384 CAGCACATAACTTTTAACTGCGG 58.842 43.478 0.00 0.00 0.00 5.69
5823 6308 9.689501 CCCCAAAACCAGTTAATACTTTATCTA 57.310 33.333 0.00 0.00 30.26 1.98
5930 6434 3.414269 GAACGGTGAAAATCCTTGGGTA 58.586 45.455 0.00 0.00 0.00 3.69
6053 6558 1.369692 CACGTCTAAGCACCCCACA 59.630 57.895 0.00 0.00 0.00 4.17
6203 6708 3.007920 CCTGGCTCTGGTGCTCCT 61.008 66.667 6.34 0.00 34.23 3.69
6236 6741 1.243902 TTGAAACGGGTGAAGATGCC 58.756 50.000 0.00 0.00 0.00 4.40
6385 6891 0.109597 GTCGCCTGGTTGCATTTCTG 60.110 55.000 0.00 0.00 0.00 3.02
6441 6949 9.230932 GTCGTCTAGTATTAGTTTGGATTGTAC 57.769 37.037 0.00 0.00 0.00 2.90
6442 6950 9.182214 TCGTCTAGTATTAGTTTGGATTGTACT 57.818 33.333 0.00 0.00 0.00 2.73
6512 7020 4.557301 GTGTATTTGTATCAGCGTTTTGGC 59.443 41.667 0.00 0.00 0.00 4.52
6521 7029 2.076100 CAGCGTTTTGGCATCTGACTA 58.924 47.619 0.00 0.00 34.64 2.59
6529 7037 3.564053 TGGCATCTGACTATTGCATGA 57.436 42.857 0.00 0.00 38.12 3.07
6576 7084 4.813027 TGGACTTTGTACTGAACGGATAC 58.187 43.478 0.00 0.00 0.00 2.24
6615 7123 2.943033 AGCAAAACTAGCTTTGTGACGT 59.057 40.909 17.54 0.00 39.87 4.34
6658 7166 2.480555 CAACGCGATGCCAGTTCC 59.519 61.111 15.93 0.00 0.00 3.62
6668 7176 2.467826 GCCAGTTCCTCGATGCTGC 61.468 63.158 0.00 0.00 0.00 5.25
6692 7200 3.440522 GTGGCACTACCTGAATTTTCTCC 59.559 47.826 11.13 0.00 40.22 3.71
6798 7306 2.796245 AAATCTTTGAACGCGCCGCC 62.796 55.000 5.73 0.00 0.00 6.13
6826 7334 9.766277 TTGTTTGTTTTGTTTTGAATGCTTATC 57.234 25.926 0.00 0.00 0.00 1.75
6852 7360 5.815222 AGTGTTCAAAAACCTTACAAATGCC 59.185 36.000 0.00 0.00 34.28 4.40
6855 7363 4.376146 TCAAAAACCTTACAAATGCCTGC 58.624 39.130 0.00 0.00 0.00 4.85
6857 7365 2.309136 AACCTTACAAATGCCTGCCT 57.691 45.000 0.00 0.00 0.00 4.75
6871 7379 5.028549 TGCCTGCCTAAAATCAAAACAAA 57.971 34.783 0.00 0.00 0.00 2.83
6872 7380 5.431765 TGCCTGCCTAAAATCAAAACAAAA 58.568 33.333 0.00 0.00 0.00 2.44
6925 7433 4.682860 CCAATGCATATCAAGCCGAATTTC 59.317 41.667 0.00 0.00 0.00 2.17
6932 7440 3.536158 TCAAGCCGAATTTCGAAACAG 57.464 42.857 19.91 7.38 43.74 3.16
6933 7441 2.225491 TCAAGCCGAATTTCGAAACAGG 59.775 45.455 19.91 16.70 43.74 4.00
6978 7490 7.344612 TCATATCTTGCCATATATTACCTCCGT 59.655 37.037 0.00 0.00 0.00 4.69
6980 7492 5.084519 TCTTGCCATATATTACCTCCGTCT 58.915 41.667 0.00 0.00 0.00 4.18
6998 7510 8.726988 CCTCCGTCTCAAATTACAAATTTAAGA 58.273 33.333 0.00 0.00 0.00 2.10
6999 7511 9.543018 CTCCGTCTCAAATTACAAATTTAAGAC 57.457 33.333 14.46 14.46 0.00 3.01
7022 7534 5.970640 ACAAGTAATTAGGGATGGAGGAAGA 59.029 40.000 0.00 0.00 0.00 2.87
7085 7599 2.346099 ATGTTTGTCCGATTTTGGCG 57.654 45.000 0.00 0.00 0.00 5.69
7104 7618 4.280677 TGGCGACAAAAAGAATGGAGAAAT 59.719 37.500 0.00 0.00 37.44 2.17
7148 7662 1.269448 GTGAACACACCCAAATGCGAT 59.731 47.619 0.00 0.00 0.00 4.58
7150 7664 1.812571 GAACACACCCAAATGCGATCT 59.187 47.619 0.00 0.00 0.00 2.75
7188 7703 9.840427 ATCTGACAAAAATAAACCTTCATAACG 57.160 29.630 0.00 0.00 0.00 3.18
7189 7704 8.293867 TCTGACAAAAATAAACCTTCATAACGG 58.706 33.333 0.00 0.00 0.00 4.44
7191 7706 5.859648 ACAAAAATAAACCTTCATAACGGCG 59.140 36.000 4.80 4.80 0.00 6.46
7202 8241 4.603231 TCATAACGGCGAAACAAATACC 57.397 40.909 16.62 0.00 0.00 2.73
7205 8244 1.595466 ACGGCGAAACAAATACCACA 58.405 45.000 16.62 0.00 0.00 4.17
7209 8248 4.215827 ACGGCGAAACAAATACCACAAATA 59.784 37.500 16.62 0.00 0.00 1.40
7273 8312 7.962373 TCAAGTCAAAGTGCGAAATATATTGTG 59.038 33.333 0.00 0.00 0.00 3.33
7335 8374 4.851558 GCCTCAAACACAACACGAAATATC 59.148 41.667 0.00 0.00 0.00 1.63
7416 8462 4.670896 TCCAGGCCAAAAAGAAAGAAAG 57.329 40.909 5.01 0.00 0.00 2.62
7418 8464 4.714308 TCCAGGCCAAAAAGAAAGAAAGAA 59.286 37.500 5.01 0.00 0.00 2.52
7420 8466 5.294306 CCAGGCCAAAAAGAAAGAAAGAAAC 59.706 40.000 5.01 0.00 0.00 2.78
7421 8467 5.294306 CAGGCCAAAAAGAAAGAAAGAAACC 59.706 40.000 5.01 0.00 0.00 3.27
7422 8468 4.574828 GGCCAAAAAGAAAGAAAGAAACCC 59.425 41.667 0.00 0.00 0.00 4.11
7424 8470 5.064707 GCCAAAAAGAAAGAAAGAAACCCAC 59.935 40.000 0.00 0.00 0.00 4.61
7425 8471 6.406370 CCAAAAAGAAAGAAAGAAACCCACT 58.594 36.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.805994 GTCGCTGCACTAAAACTAGATAAGT 59.194 40.000 0.00 0.00 41.49 2.24
15 16 5.805486 TGTCGCTGCACTAAAACTAGATAAG 59.195 40.000 0.00 0.00 0.00 1.73
16 17 5.716094 TGTCGCTGCACTAAAACTAGATAA 58.284 37.500 0.00 0.00 0.00 1.75
17 18 5.319140 TGTCGCTGCACTAAAACTAGATA 57.681 39.130 0.00 0.00 0.00 1.98
18 19 4.188247 TGTCGCTGCACTAAAACTAGAT 57.812 40.909 0.00 0.00 0.00 1.98
19 20 3.653539 TGTCGCTGCACTAAAACTAGA 57.346 42.857 0.00 0.00 0.00 2.43
20 21 4.702392 CTTTGTCGCTGCACTAAAACTAG 58.298 43.478 0.00 0.00 0.00 2.57
21 22 3.059188 GCTTTGTCGCTGCACTAAAACTA 60.059 43.478 0.00 0.00 0.00 2.24
22 23 2.287009 GCTTTGTCGCTGCACTAAAACT 60.287 45.455 0.00 0.00 0.00 2.66
23 24 2.044135 GCTTTGTCGCTGCACTAAAAC 58.956 47.619 0.00 0.00 0.00 2.43
24 25 1.001815 GGCTTTGTCGCTGCACTAAAA 60.002 47.619 0.00 0.00 0.00 1.52
25 26 0.591170 GGCTTTGTCGCTGCACTAAA 59.409 50.000 0.00 0.00 0.00 1.85
26 27 0.533978 TGGCTTTGTCGCTGCACTAA 60.534 50.000 0.00 0.30 0.00 2.24
27 28 1.070615 TGGCTTTGTCGCTGCACTA 59.929 52.632 0.00 0.00 0.00 2.74
28 29 2.203195 TGGCTTTGTCGCTGCACT 60.203 55.556 0.00 0.00 0.00 4.40
29 30 1.227999 TAGTGGCTTTGTCGCTGCAC 61.228 55.000 0.00 0.00 0.00 4.57
30 31 0.950555 CTAGTGGCTTTGTCGCTGCA 60.951 55.000 0.00 0.00 0.00 4.41
31 32 1.790387 CTAGTGGCTTTGTCGCTGC 59.210 57.895 0.00 0.00 0.00 5.25
32 33 1.639298 GGCTAGTGGCTTTGTCGCTG 61.639 60.000 0.00 0.00 41.46 5.18
33 34 1.376037 GGCTAGTGGCTTTGTCGCT 60.376 57.895 0.00 0.00 41.46 4.93
34 35 2.740714 CGGCTAGTGGCTTTGTCGC 61.741 63.158 0.00 0.00 41.46 5.19
35 36 0.108992 TACGGCTAGTGGCTTTGTCG 60.109 55.000 0.00 0.00 41.46 4.35
36 37 2.088950 TTACGGCTAGTGGCTTTGTC 57.911 50.000 0.00 0.00 41.46 3.18
37 38 2.554370 TTTACGGCTAGTGGCTTTGT 57.446 45.000 0.00 0.00 41.46 2.83
38 39 3.758300 CATTTTACGGCTAGTGGCTTTG 58.242 45.455 0.00 0.00 41.46 2.77
39 40 2.163613 GCATTTTACGGCTAGTGGCTTT 59.836 45.455 0.00 0.00 41.46 3.51
40 41 1.743394 GCATTTTACGGCTAGTGGCTT 59.257 47.619 0.00 0.00 41.46 4.35
41 42 1.379527 GCATTTTACGGCTAGTGGCT 58.620 50.000 0.00 0.00 41.46 4.75
42 43 0.380733 GGCATTTTACGGCTAGTGGC 59.619 55.000 0.00 0.00 40.90 5.01
43 44 2.038387 AGGCATTTTACGGCTAGTGG 57.962 50.000 0.00 0.00 37.53 4.00
44 45 3.308866 GTGTAGGCATTTTACGGCTAGTG 59.691 47.826 0.00 0.00 41.64 2.74
45 46 3.055675 TGTGTAGGCATTTTACGGCTAGT 60.056 43.478 0.00 0.00 41.64 2.57
46 47 3.527533 TGTGTAGGCATTTTACGGCTAG 58.472 45.455 0.00 0.00 41.64 3.42
47 48 3.196039 TCTGTGTAGGCATTTTACGGCTA 59.804 43.478 0.00 0.00 40.25 3.93
48 49 2.027561 TCTGTGTAGGCATTTTACGGCT 60.028 45.455 0.00 0.00 42.68 5.52
49 50 2.352388 TCTGTGTAGGCATTTTACGGC 58.648 47.619 0.00 0.00 0.00 5.68
50 51 5.236478 CCTAATCTGTGTAGGCATTTTACGG 59.764 44.000 0.00 0.00 32.07 4.02
51 52 5.815740 ACCTAATCTGTGTAGGCATTTTACG 59.184 40.000 6.39 0.00 41.74 3.18
52 53 7.625828 AACCTAATCTGTGTAGGCATTTTAC 57.374 36.000 6.39 0.00 41.74 2.01
53 54 8.644374 AAAACCTAATCTGTGTAGGCATTTTA 57.356 30.769 6.39 0.00 41.74 1.52
54 55 7.539034 AAAACCTAATCTGTGTAGGCATTTT 57.461 32.000 6.39 4.98 41.74 1.82
55 56 7.378181 CAAAAACCTAATCTGTGTAGGCATTT 58.622 34.615 6.39 5.98 41.74 2.32
56 57 6.071391 CCAAAAACCTAATCTGTGTAGGCATT 60.071 38.462 6.39 1.49 41.74 3.56
57 58 5.418840 CCAAAAACCTAATCTGTGTAGGCAT 59.581 40.000 6.39 0.00 41.74 4.40
58 59 4.764823 CCAAAAACCTAATCTGTGTAGGCA 59.235 41.667 6.39 0.00 41.74 4.75
59 60 5.007682 TCCAAAAACCTAATCTGTGTAGGC 58.992 41.667 6.39 0.00 41.74 3.93
60 61 6.072119 GGTTCCAAAAACCTAATCTGTGTAGG 60.072 42.308 0.00 0.00 43.37 3.18
61 62 6.488683 TGGTTCCAAAAACCTAATCTGTGTAG 59.511 38.462 8.31 0.00 40.88 2.74
62 63 6.366340 TGGTTCCAAAAACCTAATCTGTGTA 58.634 36.000 8.31 0.00 40.88 2.90
63 64 5.205056 TGGTTCCAAAAACCTAATCTGTGT 58.795 37.500 8.31 0.00 40.88 3.72
64 65 5.782893 TGGTTCCAAAAACCTAATCTGTG 57.217 39.130 8.31 0.00 40.88 3.66
65 66 5.897250 AGTTGGTTCCAAAAACCTAATCTGT 59.103 36.000 5.81 0.00 40.88 3.41
66 67 6.405278 AGTTGGTTCCAAAAACCTAATCTG 57.595 37.500 5.81 0.00 40.88 2.90
67 68 5.538813 GGAGTTGGTTCCAAAAACCTAATCT 59.461 40.000 14.85 6.29 39.10 2.40
68 69 5.303333 TGGAGTTGGTTCCAAAAACCTAATC 59.697 40.000 5.81 8.88 44.09 1.75
69 70 5.212745 TGGAGTTGGTTCCAAAAACCTAAT 58.787 37.500 5.81 0.22 44.09 1.73
70 71 4.611367 TGGAGTTGGTTCCAAAAACCTAA 58.389 39.130 5.81 0.00 44.09 2.69
71 72 4.252570 TGGAGTTGGTTCCAAAAACCTA 57.747 40.909 5.81 0.00 44.09 3.08
72 73 3.108847 TGGAGTTGGTTCCAAAAACCT 57.891 42.857 5.81 0.00 44.09 3.50
79 80 3.142951 CATTAACGTGGAGTTGGTTCCA 58.857 45.455 0.00 0.00 44.84 3.53
80 81 3.143728 ACATTAACGTGGAGTTGGTTCC 58.856 45.455 0.00 0.00 44.01 3.62
81 82 4.992951 AGTACATTAACGTGGAGTTGGTTC 59.007 41.667 0.00 0.00 44.01 3.62
82 83 4.964593 AGTACATTAACGTGGAGTTGGTT 58.035 39.130 0.00 0.00 44.01 3.67
83 84 4.612264 AGTACATTAACGTGGAGTTGGT 57.388 40.909 0.00 0.00 44.01 3.67
84 85 5.349543 GGTAAGTACATTAACGTGGAGTTGG 59.650 44.000 0.00 0.00 44.01 3.77
85 86 5.927689 TGGTAAGTACATTAACGTGGAGTTG 59.072 40.000 0.00 0.00 44.01 3.16
86 87 6.100404 TGGTAAGTACATTAACGTGGAGTT 57.900 37.500 0.00 0.00 46.36 3.01
87 88 5.726980 TGGTAAGTACATTAACGTGGAGT 57.273 39.130 0.00 0.00 33.39 3.85
88 89 6.647895 AGTTTGGTAAGTACATTAACGTGGAG 59.352 38.462 0.00 0.00 33.39 3.86
89 90 6.523840 AGTTTGGTAAGTACATTAACGTGGA 58.476 36.000 0.00 0.00 33.39 4.02
90 91 6.790285 AGTTTGGTAAGTACATTAACGTGG 57.210 37.500 0.00 0.00 33.39 4.94
91 92 8.080083 AGAAGTTTGGTAAGTACATTAACGTG 57.920 34.615 0.00 0.00 33.39 4.49
92 93 7.927629 TGAGAAGTTTGGTAAGTACATTAACGT 59.072 33.333 0.00 0.00 33.39 3.99
93 94 8.301730 TGAGAAGTTTGGTAAGTACATTAACG 57.698 34.615 0.00 0.00 33.39 3.18
97 98 8.918202 TTGATGAGAAGTTTGGTAAGTACATT 57.082 30.769 0.00 0.00 0.00 2.71
98 99 8.918202 TTTGATGAGAAGTTTGGTAAGTACAT 57.082 30.769 0.00 0.00 0.00 2.29
99 100 8.617809 GTTTTGATGAGAAGTTTGGTAAGTACA 58.382 33.333 0.00 0.00 0.00 2.90
100 101 8.617809 TGTTTTGATGAGAAGTTTGGTAAGTAC 58.382 33.333 0.00 0.00 0.00 2.73
101 102 8.740123 TGTTTTGATGAGAAGTTTGGTAAGTA 57.260 30.769 0.00 0.00 0.00 2.24
102 103 7.639113 TGTTTTGATGAGAAGTTTGGTAAGT 57.361 32.000 0.00 0.00 0.00 2.24
104 105 9.959749 GTTATGTTTTGATGAGAAGTTTGGTAA 57.040 29.630 0.00 0.00 0.00 2.85
105 106 9.349713 AGTTATGTTTTGATGAGAAGTTTGGTA 57.650 29.630 0.00 0.00 0.00 3.25
106 107 8.237811 AGTTATGTTTTGATGAGAAGTTTGGT 57.762 30.769 0.00 0.00 0.00 3.67
119 120 8.902806 CCTGCCTATGATTTAGTTATGTTTTGA 58.097 33.333 0.00 0.00 0.00 2.69
120 121 8.902806 TCCTGCCTATGATTTAGTTATGTTTTG 58.097 33.333 0.00 0.00 0.00 2.44
121 122 9.646522 ATCCTGCCTATGATTTAGTTATGTTTT 57.353 29.630 0.00 0.00 0.00 2.43
122 123 9.646522 AATCCTGCCTATGATTTAGTTATGTTT 57.353 29.630 0.00 0.00 0.00 2.83
123 124 9.646522 AAATCCTGCCTATGATTTAGTTATGTT 57.353 29.630 0.00 0.00 38.93 2.71
124 125 9.071276 CAAATCCTGCCTATGATTTAGTTATGT 57.929 33.333 0.00 0.00 38.73 2.29
125 126 9.288576 TCAAATCCTGCCTATGATTTAGTTATG 57.711 33.333 0.00 0.00 38.73 1.90
128 129 9.866655 TTATCAAATCCTGCCTATGATTTAGTT 57.133 29.630 0.00 0.00 38.73 2.24
129 130 9.866655 TTTATCAAATCCTGCCTATGATTTAGT 57.133 29.630 0.00 0.00 38.73 2.24
131 132 9.639563 TGTTTATCAAATCCTGCCTATGATTTA 57.360 29.630 0.00 0.00 38.73 1.40
132 133 8.537728 TGTTTATCAAATCCTGCCTATGATTT 57.462 30.769 0.00 0.00 40.79 2.17
133 134 8.716674 ATGTTTATCAAATCCTGCCTATGATT 57.283 30.769 0.00 0.00 33.17 2.57
134 135 8.716674 AATGTTTATCAAATCCTGCCTATGAT 57.283 30.769 0.00 0.00 35.15 2.45
135 136 8.537728 AAATGTTTATCAAATCCTGCCTATGA 57.462 30.769 0.00 0.00 0.00 2.15
139 140 9.603921 CAAATAAATGTTTATCAAATCCTGCCT 57.396 29.630 0.00 0.00 32.46 4.75
140 141 8.337532 GCAAATAAATGTTTATCAAATCCTGCC 58.662 33.333 0.00 0.00 32.46 4.85
141 142 8.881743 TGCAAATAAATGTTTATCAAATCCTGC 58.118 29.630 0.00 0.00 32.46 4.85
143 144 9.941325 TGTGCAAATAAATGTTTATCAAATCCT 57.059 25.926 0.00 0.00 32.46 3.24
148 149 8.379161 GCGATTGTGCAAATAAATGTTTATCAA 58.621 29.630 0.00 0.46 31.80 2.57
149 150 7.543520 TGCGATTGTGCAAATAAATGTTTATCA 59.456 29.630 0.00 0.00 43.02 2.15
150 151 7.893824 TGCGATTGTGCAAATAAATGTTTATC 58.106 30.769 0.00 0.00 43.02 1.75
151 152 7.824704 TGCGATTGTGCAAATAAATGTTTAT 57.175 28.000 0.00 0.00 43.02 1.40
165 166 3.001838 TGTCCGTATTAATGCGATTGTGC 59.998 43.478 24.90 9.85 38.16 4.57
166 167 4.318760 CCTGTCCGTATTAATGCGATTGTG 60.319 45.833 24.90 9.65 38.16 3.33
167 168 3.807622 CCTGTCCGTATTAATGCGATTGT 59.192 43.478 24.90 0.00 38.16 2.71
168 169 3.807622 ACCTGTCCGTATTAATGCGATTG 59.192 43.478 24.90 10.32 38.16 2.67
169 170 4.067972 ACCTGTCCGTATTAATGCGATT 57.932 40.909 24.90 2.17 38.16 3.34
170 171 3.746045 ACCTGTCCGTATTAATGCGAT 57.254 42.857 24.90 2.98 38.16 4.58
171 172 4.652421 TTACCTGTCCGTATTAATGCGA 57.348 40.909 24.90 10.07 38.16 5.10
172 173 4.986034 TGATTACCTGTCCGTATTAATGCG 59.014 41.667 17.74 17.74 35.63 4.73
173 174 5.756347 TGTGATTACCTGTCCGTATTAATGC 59.244 40.000 0.00 0.00 0.00 3.56
174 175 7.518370 GCTTGTGATTACCTGTCCGTATTAATG 60.518 40.741 0.00 0.00 0.00 1.90
175 176 6.482308 GCTTGTGATTACCTGTCCGTATTAAT 59.518 38.462 0.00 0.00 0.00 1.40
176 177 5.813672 GCTTGTGATTACCTGTCCGTATTAA 59.186 40.000 0.00 0.00 0.00 1.40
177 178 5.128171 AGCTTGTGATTACCTGTCCGTATTA 59.872 40.000 0.00 0.00 0.00 0.98
178 179 4.081087 AGCTTGTGATTACCTGTCCGTATT 60.081 41.667 0.00 0.00 0.00 1.89
179 180 3.451178 AGCTTGTGATTACCTGTCCGTAT 59.549 43.478 0.00 0.00 0.00 3.06
180 181 2.829720 AGCTTGTGATTACCTGTCCGTA 59.170 45.455 0.00 0.00 0.00 4.02
183 184 5.186198 ACATTAGCTTGTGATTACCTGTCC 58.814 41.667 0.00 0.00 0.00 4.02
186 187 8.414003 TCTAGTACATTAGCTTGTGATTACCTG 58.586 37.037 1.14 0.00 0.00 4.00
280 281 1.339151 CGCCTAGCAGGAAAAGGAACT 60.339 52.381 6.40 0.00 37.93 3.01
307 308 4.642885 GGGAAATATGGAATGTTGGACGAA 59.357 41.667 0.00 0.00 0.00 3.85
329 330 3.838244 TCAAGGAATAATCGTCAGGGG 57.162 47.619 0.00 0.00 0.00 4.79
336 337 3.065371 AGGCGCTTTTCAAGGAATAATCG 59.935 43.478 7.64 0.00 0.00 3.34
340 341 6.071616 ACAATTAAGGCGCTTTTCAAGGAATA 60.072 34.615 11.00 0.00 0.00 1.75
421 422 7.275560 GTGTGAATAAATGTTTGCCAACTATCC 59.724 37.037 2.01 0.00 33.58 2.59
458 460 3.457234 CAGCTGTCACTTGTGTAGACAA 58.543 45.455 5.25 5.22 41.27 3.18
499 501 2.426024 CAGCCTCCAATCACAAATCCAG 59.574 50.000 0.00 0.00 0.00 3.86
503 505 3.087031 CTGTCAGCCTCCAATCACAAAT 58.913 45.455 0.00 0.00 0.00 2.32
510 512 1.980765 TCAGAACTGTCAGCCTCCAAT 59.019 47.619 0.00 0.00 0.00 3.16
545 547 0.949105 CACCCCTGCACGACTACAAC 60.949 60.000 0.00 0.00 0.00 3.32
590 592 2.066262 GTTGAAAGAATCAGACCGCGA 58.934 47.619 8.23 0.00 39.77 5.87
592 594 1.128692 CGGTTGAAAGAATCAGACCGC 59.871 52.381 14.45 0.00 45.99 5.68
612 614 1.150827 GCCTGAAGCAAAACCATTGC 58.849 50.000 5.06 5.06 45.22 3.56
623 625 2.884639 TCCAAAGTAGTTTGCCTGAAGC 59.115 45.455 16.26 0.00 41.64 3.86
642 644 1.079503 CAGCAGCTTTACGGAACTCC 58.920 55.000 0.00 0.00 0.00 3.85
648 650 1.061131 CGTTGATCAGCAGCTTTACGG 59.939 52.381 10.36 0.00 0.00 4.02
656 658 0.935898 GCTCCATCGTTGATCAGCAG 59.064 55.000 10.36 3.07 29.89 4.24
685 687 0.528470 GGAGACACTCTTCACCCGAG 59.472 60.000 0.00 0.00 34.70 4.63
689 691 3.071747 AGGAAAAGGAGACACTCTTCACC 59.928 47.826 0.00 0.00 0.00 4.02
695 697 3.254892 CGCTAAGGAAAAGGAGACACTC 58.745 50.000 0.00 0.00 0.00 3.51
709 711 0.179073 CATGTCCCTCCACGCTAAGG 60.179 60.000 0.00 0.00 0.00 2.69
717 719 4.100084 CCAGCGCATGTCCCTCCA 62.100 66.667 11.47 0.00 0.00 3.86
730 732 5.048434 GGATAATCCTATGCAAAGAACCAGC 60.048 44.000 0.00 0.00 32.53 4.85
731 733 6.566197 GGATAATCCTATGCAAAGAACCAG 57.434 41.667 0.00 0.00 32.53 4.00
753 755 7.331026 TGACATTACAGGACTGAAAAGATAGG 58.669 38.462 6.29 0.00 0.00 2.57
757 759 6.998074 ACATTGACATTACAGGACTGAAAAGA 59.002 34.615 6.29 0.00 0.00 2.52
758 760 7.206981 ACATTGACATTACAGGACTGAAAAG 57.793 36.000 6.29 0.00 0.00 2.27
759 761 7.581213 AACATTGACATTACAGGACTGAAAA 57.419 32.000 6.29 0.73 0.00 2.29
760 762 7.581213 AAACATTGACATTACAGGACTGAAA 57.419 32.000 6.29 0.00 0.00 2.69
761 763 8.684386 TTAAACATTGACATTACAGGACTGAA 57.316 30.769 6.29 0.00 0.00 3.02
762 764 7.936847 ACTTAAACATTGACATTACAGGACTGA 59.063 33.333 6.29 0.00 0.00 3.41
763 765 8.017373 CACTTAAACATTGACATTACAGGACTG 58.983 37.037 0.00 0.00 0.00 3.51
764 766 7.174946 CCACTTAAACATTGACATTACAGGACT 59.825 37.037 0.00 0.00 0.00 3.85
765 767 7.305474 CCACTTAAACATTGACATTACAGGAC 58.695 38.462 0.00 0.00 0.00 3.85
766 768 6.432783 CCCACTTAAACATTGACATTACAGGA 59.567 38.462 0.00 0.00 0.00 3.86
767 769 6.208599 ACCCACTTAAACATTGACATTACAGG 59.791 38.462 0.00 0.00 0.00 4.00
768 770 7.214467 ACCCACTTAAACATTGACATTACAG 57.786 36.000 0.00 0.00 0.00 2.74
769 771 7.068839 ACAACCCACTTAAACATTGACATTACA 59.931 33.333 0.00 0.00 0.00 2.41
770 772 7.430441 ACAACCCACTTAAACATTGACATTAC 58.570 34.615 0.00 0.00 0.00 1.89
771 773 7.589958 ACAACCCACTTAAACATTGACATTA 57.410 32.000 0.00 0.00 0.00 1.90
772 774 6.478512 ACAACCCACTTAAACATTGACATT 57.521 33.333 0.00 0.00 0.00 2.71
773 775 7.430441 GTTACAACCCACTTAAACATTGACAT 58.570 34.615 0.00 0.00 0.00 3.06
774 776 6.183360 GGTTACAACCCACTTAAACATTGACA 60.183 38.462 0.00 0.00 43.43 3.58
848 850 1.540363 CCGTGCATATGGGTGGTCTAC 60.540 57.143 4.56 0.00 0.00 2.59
849 851 0.756294 CCGTGCATATGGGTGGTCTA 59.244 55.000 4.56 0.00 0.00 2.59
850 852 1.526887 CCGTGCATATGGGTGGTCT 59.473 57.895 4.56 0.00 0.00 3.85
851 853 1.525995 CCCGTGCATATGGGTGGTC 60.526 63.158 12.24 0.00 46.47 4.02
852 854 2.595095 CCCGTGCATATGGGTGGT 59.405 61.111 12.24 0.00 46.47 4.16
858 860 7.846593 TATACTAGGTATTTGCCCGTGCATATG 60.847 40.741 6.10 0.00 39.16 1.78
859 861 6.155565 TATACTAGGTATTTGCCCGTGCATAT 59.844 38.462 0.00 0.00 41.27 1.78
902 1097 8.992073 CGAGGGATTTTCTTTTTCATTTCAAAT 58.008 29.630 0.00 0.00 0.00 2.32
903 1098 7.440856 CCGAGGGATTTTCTTTTTCATTTCAAA 59.559 33.333 0.00 0.00 0.00 2.69
906 1101 5.348724 GCCGAGGGATTTTCTTTTTCATTTC 59.651 40.000 0.00 0.00 0.00 2.17
911 1106 2.826128 AGGCCGAGGGATTTTCTTTTTC 59.174 45.455 0.00 0.00 0.00 2.29
1089 1284 3.099170 AATGGGGAGGCGGATGCT 61.099 61.111 0.00 0.00 42.25 3.79
1100 1295 1.135960 GGAGGGAGAAGAGAATGGGG 58.864 60.000 0.00 0.00 0.00 4.96
1241 1442 4.851179 GGCGCGGAAACCCTAGGG 62.851 72.222 27.36 27.36 42.03 3.53
1266 1467 2.526888 AGACACGGAGAATACAGGGA 57.473 50.000 0.00 0.00 0.00 4.20
1270 1471 2.159421 GCGAGAAGACACGGAGAATACA 60.159 50.000 0.00 0.00 0.00 2.29
1276 1477 1.137825 GGAGCGAGAAGACACGGAG 59.862 63.158 0.00 0.00 0.00 4.63
1293 1515 4.446371 CACTGCCTATCTGAAAACCTAGG 58.554 47.826 7.41 7.41 34.97 3.02
1314 1536 1.338105 CGACATCAGGAGTTCAAGCCA 60.338 52.381 0.00 0.00 0.00 4.75
1316 1538 1.066858 TCCGACATCAGGAGTTCAAGC 60.067 52.381 0.00 0.00 33.19 4.01
1329 1552 3.739300 CGTGAACAAGTAAACTCCGACAT 59.261 43.478 0.00 0.00 0.00 3.06
1335 1558 4.725556 TCATGCGTGAACAAGTAAACTC 57.274 40.909 6.04 0.00 0.00 3.01
1384 1610 9.671279 TCAGATCAGAGCAAAGAAACAATATAA 57.329 29.630 0.00 0.00 0.00 0.98
1416 1642 7.867445 AAAAACGCGAATAAACAGAAATGAT 57.133 28.000 15.93 0.00 0.00 2.45
1443 1669 8.147172 CGAAATAAAAACGCACAACATTAGAAG 58.853 33.333 0.00 0.00 0.00 2.85
1464 1690 2.025887 AGTCCTCTGCCCAAATCGAAAT 60.026 45.455 0.00 0.00 0.00 2.17
1475 1701 0.603569 TCTTCAACGAGTCCTCTGCC 59.396 55.000 0.00 0.00 0.00 4.85
1508 1734 0.961019 TGTTGCCATGCTGAACCTTC 59.039 50.000 0.00 0.00 0.00 3.46
1576 1802 3.357079 CCAGCACCCAACTGACGC 61.357 66.667 0.00 0.00 37.32 5.19
1641 1867 0.249120 TGCATCCTACGGTGAACTGG 59.751 55.000 0.00 0.00 0.00 4.00
1651 1877 2.413837 ACAGTGAAACGTGCATCCTAC 58.586 47.619 0.00 0.00 45.86 3.18
1673 1899 2.610479 CGCAGATCTATACGGTGGCATT 60.610 50.000 0.00 0.00 0.00 3.56
1675 1901 0.313987 CGCAGATCTATACGGTGGCA 59.686 55.000 0.00 0.00 0.00 4.92
1681 1910 3.000082 TCACTTGCGCAGATCTATACG 58.000 47.619 11.31 0.87 0.00 3.06
1722 1951 3.881688 CAGGGCAAGGAGATAACAGATTG 59.118 47.826 0.00 0.00 0.00 2.67
1821 2062 0.457851 CAAAACCGACCTGCCAAACA 59.542 50.000 0.00 0.00 0.00 2.83
1826 2067 0.249280 CAAACCAAAACCGACCTGCC 60.249 55.000 0.00 0.00 0.00 4.85
1827 2068 0.874175 GCAAACCAAAACCGACCTGC 60.874 55.000 0.00 0.00 0.00 4.85
1828 2069 0.249280 GGCAAACCAAAACCGACCTG 60.249 55.000 0.00 0.00 35.26 4.00
1829 2070 0.684805 TGGCAAACCAAAACCGACCT 60.685 50.000 0.00 0.00 45.37 3.85
1830 2071 1.817209 TGGCAAACCAAAACCGACC 59.183 52.632 0.00 0.00 45.37 4.79
1877 2118 6.828785 ACTAGTCCTCACAAGACACAAATTTT 59.171 34.615 0.00 0.00 36.68 1.82
1931 2173 9.853555 CACATAAAAGCATTAGATTTACCAACA 57.146 29.630 0.00 0.00 30.96 3.33
1932 2174 8.807581 GCACATAAAAGCATTAGATTTACCAAC 58.192 33.333 0.00 0.00 30.96 3.77
1933 2175 8.526978 TGCACATAAAAGCATTAGATTTACCAA 58.473 29.630 0.00 0.00 35.51 3.67
1948 2195 2.553602 TGACACAGCCTGCACATAAAAG 59.446 45.455 0.00 0.00 0.00 2.27
2069 2316 4.743644 GTGTAACATCGGCTGGAGTATAAC 59.256 45.833 0.00 0.00 36.32 1.89
2071 2318 4.212716 AGTGTAACATCGGCTGGAGTATA 58.787 43.478 0.00 0.00 41.43 1.47
2075 2322 1.478510 AGAGTGTAACATCGGCTGGAG 59.521 52.381 0.00 0.00 41.43 3.86
2076 2323 1.204704 CAGAGTGTAACATCGGCTGGA 59.795 52.381 0.00 0.00 41.43 3.86
2123 2371 6.015519 CACAAAGTTGGGTCATCTATTTTGGA 60.016 38.462 0.00 0.00 0.00 3.53
2124 2372 6.158598 CACAAAGTTGGGTCATCTATTTTGG 58.841 40.000 0.00 0.00 0.00 3.28
2132 2380 3.821033 AGTTAGCACAAAGTTGGGTCATC 59.179 43.478 0.00 0.00 33.05 2.92
2134 2382 3.290948 AGTTAGCACAAAGTTGGGTCA 57.709 42.857 0.00 0.00 33.05 4.02
2138 2386 7.254227 TGTACTAAAGTTAGCACAAAGTTGG 57.746 36.000 2.29 0.00 34.88 3.77
2144 2392 7.201750 CCCAACTTTGTACTAAAGTTAGCACAA 60.202 37.037 23.56 11.25 45.57 3.33
2146 2394 6.261603 ACCCAACTTTGTACTAAAGTTAGCAC 59.738 38.462 23.56 0.00 45.57 4.40
2147 2395 6.358991 ACCCAACTTTGTACTAAAGTTAGCA 58.641 36.000 23.56 0.00 45.57 3.49
2153 2401 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
2154 2402 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2156 2404 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2157 2405 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2158 2406 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2159 2407 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2160 2408 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2161 2409 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2162 2410 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2165 2413 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2166 2414 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2167 2415 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2168 2416 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2169 2417 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2170 2418 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2173 2421 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2175 2423 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2184 2432 2.564504 GGTAACAAGTACTCCCTCCGTT 59.435 50.000 0.00 0.00 32.80 4.44
2204 2452 3.503827 TGCTATCGTTGTGTACTCTGG 57.496 47.619 0.00 0.00 0.00 3.86
2215 2464 7.710907 TCTTTAACAGATATGCTTGCTATCGTT 59.289 33.333 15.78 15.78 32.07 3.85
2217 2466 7.643528 TCTTTAACAGATATGCTTGCTATCG 57.356 36.000 0.00 0.00 32.07 2.92
2377 2636 7.117667 GCAATTAAGGGAGGTAAAAACACAATG 59.882 37.037 0.00 0.00 0.00 2.82
2383 2642 6.091718 TGTGCAATTAAGGGAGGTAAAAAC 57.908 37.500 0.00 0.00 0.00 2.43
2390 2651 5.192927 TGATAGTTGTGCAATTAAGGGAGG 58.807 41.667 0.00 0.00 0.00 4.30
2416 2677 3.127548 CACTGTACTGTCCCAAATGCATC 59.872 47.826 0.00 0.00 0.00 3.91
2442 2703 6.042322 ACTGGCGTGGTTCCATAAACTATATA 59.958 38.462 0.00 0.00 38.02 0.86
2455 2716 2.443887 TACACTAACTGGCGTGGTTC 57.556 50.000 0.00 0.00 35.51 3.62
2461 2722 3.181458 ACCCCATATTACACTAACTGGCG 60.181 47.826 0.00 0.00 0.00 5.69
2463 2724 5.623956 TCACCCCATATTACACTAACTGG 57.376 43.478 0.00 0.00 0.00 4.00
2469 2730 4.442893 CGACACATCACCCCATATTACACT 60.443 45.833 0.00 0.00 0.00 3.55
2470 2731 3.807622 CGACACATCACCCCATATTACAC 59.192 47.826 0.00 0.00 0.00 2.90
2473 2734 2.436173 TGCGACACATCACCCCATATTA 59.564 45.455 0.00 0.00 0.00 0.98
2476 2737 0.177836 CTGCGACACATCACCCCATA 59.822 55.000 0.00 0.00 0.00 2.74
2482 2743 2.112522 CGATACTCTGCGACACATCAC 58.887 52.381 0.00 0.00 0.00 3.06
2492 2753 2.336809 CCTCCGCCGATACTCTGC 59.663 66.667 0.00 0.00 0.00 4.26
2497 2758 3.925090 CACCCCCTCCGCCGATAC 61.925 72.222 0.00 0.00 0.00 2.24
2502 2763 3.723922 TAAAGCACCCCCTCCGCC 61.724 66.667 0.00 0.00 0.00 6.13
2512 2773 4.157656 TGTCTATGGGCATTTGTAAAGCAC 59.842 41.667 0.00 0.00 0.00 4.40
2556 2817 9.643693 ATCAATTAAGCAAAACCAGTTCATAAG 57.356 29.630 0.00 0.00 0.00 1.73
2668 2929 7.060600 TCAGATGTGAAGTTATAAGCAAACG 57.939 36.000 0.00 0.00 32.00 3.60
2703 2964 6.572519 TCTCCAATAAATGCAAGCAATTACC 58.427 36.000 4.82 0.00 0.00 2.85
2843 3126 3.605634 AGCATTGCCATCGTTAGTAACA 58.394 40.909 13.33 1.33 0.00 2.41
2987 3274 9.739276 AGTTAGATTGAACATAGTTTCATCCAA 57.261 29.630 0.00 0.00 35.42 3.53
3091 3378 7.539712 AAACATCATACCTAGAACAATGACG 57.460 36.000 0.00 0.00 31.56 4.35
3190 3479 7.367285 GGATGGCATGCTTACGAAAATAATAA 58.633 34.615 18.92 0.00 0.00 1.40
3201 3490 0.179045 ACCTCGGATGGCATGCTTAC 60.179 55.000 18.92 5.47 0.00 2.34
3240 3529 6.742109 AGTTTGACCAGAAACAGAATTCATG 58.258 36.000 8.44 5.85 38.14 3.07
3241 3530 6.966534 AGTTTGACCAGAAACAGAATTCAT 57.033 33.333 8.44 0.00 38.14 2.57
3243 3532 8.567948 TGATTAGTTTGACCAGAAACAGAATTC 58.432 33.333 0.00 0.00 38.14 2.17
3308 3615 4.273480 ACAGACCAGAAACAGAATTTGACG 59.727 41.667 0.00 0.00 0.00 4.35
3365 3673 6.321717 TGATAGCTTAAAATTTGAAGTGCGG 58.678 36.000 15.41 0.00 0.00 5.69
3366 3674 7.750458 TCTTGATAGCTTAAAATTTGAAGTGCG 59.250 33.333 15.41 0.00 0.00 5.34
3433 3741 8.762481 AGTACAAAAGAATAAAGTCCCAAACT 57.238 30.769 0.00 0.00 41.10 2.66
3538 3846 3.448686 CATCAAGTAACTACCTCGGCAG 58.551 50.000 0.00 0.00 0.00 4.85
3585 3893 9.927081 AGATACATAAATCACCAAAGGAAGAAT 57.073 29.630 0.00 0.00 0.00 2.40
3751 4059 7.645058 AGAGAACAAAATTCCAGAAGAACAA 57.355 32.000 0.00 0.00 37.29 2.83
3800 4110 5.118990 ACATCCCAACTGAATCAGATTACG 58.881 41.667 18.20 1.79 35.18 3.18
3945 4255 9.699410 AAATTTATCCCATCAAGTGAATCTACA 57.301 29.630 0.00 0.00 0.00 2.74
4050 4519 1.202758 ACTTCACGCATTCCTTGACCA 60.203 47.619 0.00 0.00 0.00 4.02
4130 4599 4.141135 TGAACATGACCCCTTTAAGAACCA 60.141 41.667 0.00 0.00 0.00 3.67
4224 4693 4.410883 TCTCCCTTTTTGTACTCAACAGGA 59.589 41.667 10.53 3.18 39.87 3.86
4337 4806 7.604164 ACCGATAGCAACTCAATAGGATTAATG 59.396 37.037 0.00 0.00 0.00 1.90
4439 4910 7.040494 TGAATTTCAAAATTTGCACACAGAGA 58.960 30.769 0.00 0.00 38.64 3.10
4520 4991 1.160137 CACTAACACCAGCCTTGCTC 58.840 55.000 0.00 0.00 36.40 4.26
4562 5033 5.266242 GCTTTAGCAATCCTGTTGTTATCG 58.734 41.667 0.00 0.00 41.59 2.92
4763 5234 1.132849 TGAAGGTTCCTCTCCACCTCA 60.133 52.381 0.00 0.00 43.05 3.86
4862 5333 1.067060 CATGGCATCCTGTGAATGCAG 59.933 52.381 9.97 0.00 42.65 4.41
4981 5452 6.569801 GCAATACCTTTTCTACACCTTCAACC 60.570 42.308 0.00 0.00 0.00 3.77
5054 5525 4.469586 TGTGAATGCACTAATAGACCTCCA 59.530 41.667 5.18 0.00 45.36 3.86
5060 5531 5.874810 GGACTTGTGTGAATGCACTAATAGA 59.125 40.000 5.18 0.00 45.36 1.98
5117 5588 2.158986 TCAATGCCCCAAACACACAAAG 60.159 45.455 0.00 0.00 0.00 2.77
5200 5676 2.171448 AGCTTCATAAGGCCACTGGTAG 59.829 50.000 5.01 0.00 0.00 3.18
5203 5679 1.386533 CAGCTTCATAAGGCCACTGG 58.613 55.000 5.01 0.00 0.00 4.00
5367 5843 1.774254 TGCTGGACTCCCTTTCTTTGA 59.226 47.619 0.00 0.00 0.00 2.69
5369 5845 3.532641 AATGCTGGACTCCCTTTCTTT 57.467 42.857 0.00 0.00 0.00 2.52
5399 5875 8.791327 AACAAAAACATGTCAAAAAGGATCTT 57.209 26.923 0.00 0.00 31.81 2.40
5442 5924 1.446016 AGTCCCAAGGGTAAAGCTGT 58.554 50.000 4.80 0.00 36.47 4.40
5449 5931 5.788533 TCAAAGATCTTAAGTCCCAAGGGTA 59.211 40.000 8.75 0.00 36.47 3.69
5451 5933 4.944317 GTCAAAGATCTTAAGTCCCAAGGG 59.056 45.833 8.75 0.00 0.00 3.95
5452 5934 5.560724 TGTCAAAGATCTTAAGTCCCAAGG 58.439 41.667 8.75 0.00 0.00 3.61
5453 5935 6.656693 ACATGTCAAAGATCTTAAGTCCCAAG 59.343 38.462 8.75 0.73 0.00 3.61
5464 5946 8.697507 AGGTAAGAAAAACATGTCAAAGATCT 57.302 30.769 0.00 0.00 0.00 2.75
5466 5948 8.515414 GCTAGGTAAGAAAAACATGTCAAAGAT 58.485 33.333 0.00 0.00 0.00 2.40
5467 5949 7.719633 AGCTAGGTAAGAAAAACATGTCAAAGA 59.280 33.333 0.00 0.00 0.00 2.52
5469 5951 7.255451 CCAGCTAGGTAAGAAAAACATGTCAAA 60.255 37.037 0.00 0.00 0.00 2.69
5487 5969 1.674221 GCTGTGACACTTCCAGCTAGG 60.674 57.143 7.20 0.00 46.23 3.02
5488 5970 1.719600 GCTGTGACACTTCCAGCTAG 58.280 55.000 7.20 0.00 46.23 3.42
5514 5996 2.260844 TTCCACAGCTCAAGTCCAAG 57.739 50.000 0.00 0.00 0.00 3.61
5528 6010 7.315890 AGAACATAAAGCTAAGCAATTTCCAC 58.684 34.615 0.00 0.00 0.00 4.02
5584 6067 2.079925 GCCTTCTTACAACTGGCTCAG 58.920 52.381 0.00 1.16 40.36 3.35
5631 6114 8.854614 AAATCTTGAAGTACTGTATCAAAGCT 57.145 30.769 9.23 0.00 33.08 3.74
5681 6164 8.677148 ACATGTATTGTTGTAGATAATCCCAC 57.323 34.615 0.00 0.00 33.74 4.61
5704 6187 4.260139 TGTAGGAATGCAGTTCGTTACA 57.740 40.909 0.00 6.65 37.73 2.41
5705 6188 5.808540 TGTATGTAGGAATGCAGTTCGTTAC 59.191 40.000 0.00 4.44 37.73 2.50
5708 6191 4.433615 CTGTATGTAGGAATGCAGTTCGT 58.566 43.478 0.00 1.16 36.04 3.85
5724 6207 4.952262 AAGTTATGTGCTGCACTGTATG 57.048 40.909 30.43 0.00 35.11 2.39
5755 6238 7.762382 AGCTTTAATTACTGTAAGCACCAATC 58.238 34.615 17.59 0.00 44.08 2.67
5868 6368 6.097554 ACAATGGAATTTAACCAACACTCACA 59.902 34.615 0.00 0.00 40.93 3.58
5870 6370 6.723298 ACAATGGAATTTAACCAACACTCA 57.277 33.333 0.00 0.00 40.93 3.41
5930 6434 0.036010 CAGTCCTTCCATCAACGCCT 60.036 55.000 0.00 0.00 0.00 5.52
6006 6511 3.189287 CACAATACAAGTGAAGGGACAGC 59.811 47.826 0.00 0.00 39.30 4.40
6053 6558 7.706179 CAGATCTACAACACCAACAACAAAAAT 59.294 33.333 0.00 0.00 0.00 1.82
6203 6708 2.817258 CGTTTCAATCTGGGGTTGCTTA 59.183 45.455 0.00 0.00 0.00 3.09
6236 6741 2.544685 GGGATCATCTGTTCAGTGTCG 58.455 52.381 0.00 0.00 0.00 4.35
6385 6891 0.173255 CGGCCACCATCAAACATTCC 59.827 55.000 2.24 0.00 0.00 3.01
6441 6949 5.237344 CCATCCGAACATAGGAAAAAGCTAG 59.763 44.000 0.00 0.00 41.69 3.42
6442 6950 5.123227 CCATCCGAACATAGGAAAAAGCTA 58.877 41.667 0.00 0.00 41.69 3.32
6443 6951 3.947834 CCATCCGAACATAGGAAAAAGCT 59.052 43.478 0.00 0.00 41.69 3.74
6512 7020 6.206498 CAACCATTCATGCAATAGTCAGATG 58.794 40.000 0.00 0.00 0.00 2.90
6521 7029 3.592059 GAACAGCAACCATTCATGCAAT 58.408 40.909 0.00 0.00 44.95 3.56
6529 7037 2.167487 ACAAAACCGAACAGCAACCATT 59.833 40.909 0.00 0.00 0.00 3.16
6576 7084 7.492344 AGTTTTGCTGTTAAATTCAAGTTCTGG 59.508 33.333 0.00 0.00 0.00 3.86
6641 7149 1.970917 GAGGAACTGGCATCGCGTTG 61.971 60.000 12.78 12.78 41.55 4.10
6644 7152 2.960957 ATCGAGGAACTGGCATCGCG 62.961 60.000 0.00 0.00 41.55 5.87
6658 7166 2.435410 TGCCACAGCAGCATCGAG 60.435 61.111 0.00 0.00 46.52 4.04
6668 7176 4.074970 AGAAAATTCAGGTAGTGCCACAG 58.925 43.478 0.00 0.00 40.61 3.66
6798 7306 8.450385 AAGCATTCAAAACAAAACAAACAATG 57.550 26.923 0.00 0.00 0.00 2.82
6826 7334 7.169140 GGCATTTGTAAGGTTTTTGAACACTAG 59.831 37.037 0.00 0.00 0.00 2.57
6830 7338 5.814705 CAGGCATTTGTAAGGTTTTTGAACA 59.185 36.000 0.00 0.00 0.00 3.18
6852 7360 9.786105 AAAATGTTTTGTTTTGATTTTAGGCAG 57.214 25.926 0.00 0.00 0.00 4.85
6887 7395 6.743575 ATGCATTGGTAGACTCAACTTTAC 57.256 37.500 0.00 0.00 0.00 2.01
6925 7433 8.932791 ACTTTGACACTATTTATACCTGTTTCG 58.067 33.333 0.00 0.00 0.00 3.46
6998 7510 5.970640 TCTTCCTCCATCCCTAATTACTTGT 59.029 40.000 0.00 0.00 0.00 3.16
6999 7511 6.500589 TCTTCCTCCATCCCTAATTACTTG 57.499 41.667 0.00 0.00 0.00 3.16
7130 7644 1.812571 AGATCGCATTTGGGTGTGTTC 59.187 47.619 0.00 0.00 0.00 3.18
7175 7690 2.879646 TGTTTCGCCGTTATGAAGGTTT 59.120 40.909 0.00 0.00 0.00 3.27
7187 7702 2.690173 TTGTGGTATTTGTTTCGCCG 57.310 45.000 0.00 0.00 0.00 6.46
7188 7703 7.589574 AAATATTTGTGGTATTTGTTTCGCC 57.410 32.000 0.00 0.00 32.19 5.54
7205 8244 9.953697 TGCTTTCGCCGTTATAAATAAATATTT 57.046 25.926 5.89 5.89 36.23 1.40
7209 8248 6.787225 TGTGCTTTCGCCGTTATAAATAAAT 58.213 32.000 0.00 0.00 34.43 1.40
7225 8264 8.477984 TTGATATGCCTTTTATTTGTGCTTTC 57.522 30.769 0.00 0.00 0.00 2.62
7234 8273 7.761249 GCACTTTGACTTGATATGCCTTTTATT 59.239 33.333 0.00 0.00 0.00 1.40
7239 8278 3.127548 CGCACTTTGACTTGATATGCCTT 59.872 43.478 0.00 0.00 0.00 4.35
7298 8337 7.414436 TGTGTTTGAGGCGCTTAATATAATTC 58.586 34.615 7.64 0.00 0.00 2.17
7301 8340 6.149640 TGTTGTGTTTGAGGCGCTTAATATAA 59.850 34.615 7.64 0.00 0.00 0.98
7397 8443 5.294306 GGTTTCTTTCTTTCTTTTTGGCCTG 59.706 40.000 3.32 0.00 0.00 4.85
7416 8462 9.614792 ATTCAAACAGATATACTAGTGGGTTTC 57.385 33.333 5.39 0.00 0.00 2.78
7418 8464 9.975218 AAATTCAAACAGATATACTAGTGGGTT 57.025 29.630 5.39 0.00 0.00 4.11
7420 8466 8.840321 CCAAATTCAAACAGATATACTAGTGGG 58.160 37.037 5.39 0.00 0.00 4.61
7421 8467 9.396022 ACCAAATTCAAACAGATATACTAGTGG 57.604 33.333 5.39 0.00 0.00 4.00
7424 8470 8.345565 GCCACCAAATTCAAACAGATATACTAG 58.654 37.037 0.00 0.00 0.00 2.57
7425 8471 7.011950 CGCCACCAAATTCAAACAGATATACTA 59.988 37.037 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.