Multiple sequence alignment - TraesCS7D01G332100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G332100 chr7D 100.000 3119 0 0 1 3119 423582983 423586101 0.000000e+00 5760
1 TraesCS7D01G332100 chr7B 91.958 1716 85 27 576 2262 440347622 440349313 0.000000e+00 2355
2 TraesCS7D01G332100 chr7B 91.373 255 22 0 2865 3119 440352080 440352334 1.780000e-92 350
3 TraesCS7D01G332100 chr7B 92.632 95 7 0 2777 2871 440350585 440350679 1.510000e-28 137
4 TraesCS7D01G332100 chr7A 91.073 1277 61 19 718 1960 509531610 509530353 0.000000e+00 1677
5 TraesCS7D01G332100 chr7A 92.437 357 23 4 1999 2352 509529824 509529469 9.980000e-140 507
6 TraesCS7D01G332100 chr7A 91.827 208 17 0 2777 2984 509529385 509529178 1.090000e-74 291
7 TraesCS7D01G332100 chr7A 87.783 221 13 6 450 667 509531814 509531605 2.400000e-61 246
8 TraesCS7D01G332100 chr3D 90.226 133 13 0 1048 1180 160912165 160912033 1.150000e-39 174
9 TraesCS7D01G332100 chr3B 90.226 133 13 0 1048 1180 237648051 237647919 1.150000e-39 174
10 TraesCS7D01G332100 chr3A 90.226 133 13 0 1048 1180 189276073 189276205 1.150000e-39 174
11 TraesCS7D01G332100 chr3A 85.235 149 21 1 1261 1409 189276328 189276475 5.390000e-33 152
12 TraesCS7D01G332100 chr3A 85.496 131 19 0 2498 2628 25734045 25734175 1.510000e-28 137
13 TraesCS7D01G332100 chr5A 85.827 127 18 0 2500 2626 652354405 652354279 5.430000e-28 135
14 TraesCS7D01G332100 chr2B 84.375 128 20 0 2492 2619 777141291 777141418 3.270000e-25 126
15 TraesCS7D01G332100 chr1D 85.039 127 10 9 2367 2490 108363289 108363409 1.520000e-23 121
16 TraesCS7D01G332100 chr6A 89.773 88 8 1 2498 2585 111404402 111404488 9.140000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G332100 chr7D 423582983 423586101 3118 False 5760.000000 5760 100.000000 1 3119 1 chr7D.!!$F1 3118
1 TraesCS7D01G332100 chr7B 440347622 440352334 4712 False 947.333333 2355 91.987667 576 3119 3 chr7B.!!$F1 2543
2 TraesCS7D01G332100 chr7A 509529178 509531814 2636 True 680.250000 1677 90.780000 450 2984 4 chr7A.!!$R1 2534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.035439 GCTTGCTACCACTTGGCCTA 60.035 55.0 3.32 0.00 39.32 3.93 F
473 474 0.035881 CATGGGATCGGAGTGGATGG 59.964 60.0 0.00 0.00 0.00 3.51 F
1192 1212 0.028505 CGAGGTCGGTGTACATACGG 59.971 60.0 18.68 4.35 35.37 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1139 0.458025 CGTTGTCGAGGCCTAGGAAC 60.458 60.0 14.75 11.62 39.71 3.62 R
1696 1767 0.938168 GCTTCGTCTCGTTGAACCGT 60.938 55.0 0.00 0.00 0.00 4.83 R
2703 4034 0.030638 GCACAAACATGCGGTTCACT 59.969 50.0 0.00 0.00 39.29 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.485418 TTTTTGCGTATTGTGTAGAGAAAGA 57.515 32.000 0.00 0.00 0.00 2.52
29 30 7.485418 TTTTGCGTATTGTGTAGAGAAAGAA 57.515 32.000 0.00 0.00 0.00 2.52
30 31 7.667043 TTTGCGTATTGTGTAGAGAAAGAAT 57.333 32.000 0.00 0.00 0.00 2.40
31 32 8.766000 TTTGCGTATTGTGTAGAGAAAGAATA 57.234 30.769 0.00 0.00 0.00 1.75
32 33 8.766000 TTGCGTATTGTGTAGAGAAAGAATAA 57.234 30.769 0.00 0.00 0.00 1.40
33 34 8.766000 TGCGTATTGTGTAGAGAAAGAATAAA 57.234 30.769 0.00 0.00 0.00 1.40
34 35 9.210329 TGCGTATTGTGTAGAGAAAGAATAAAA 57.790 29.630 0.00 0.00 0.00 1.52
91 92 9.659135 AAACATAAATCATTATCTGGGAATGGA 57.341 29.630 0.00 0.00 35.42 3.41
92 93 9.659135 AACATAAATCATTATCTGGGAATGGAA 57.341 29.630 0.00 0.00 35.42 3.53
93 94 9.659135 ACATAAATCATTATCTGGGAATGGAAA 57.341 29.630 0.00 0.00 35.42 3.13
96 97 7.976414 AATCATTATCTGGGAATGGAAAACA 57.024 32.000 0.00 0.00 35.42 2.83
97 98 6.773976 TCATTATCTGGGAATGGAAAACAC 57.226 37.500 0.00 0.00 35.42 3.32
98 99 6.252233 TCATTATCTGGGAATGGAAAACACA 58.748 36.000 0.00 0.00 35.42 3.72
99 100 6.723515 TCATTATCTGGGAATGGAAAACACAA 59.276 34.615 0.00 0.00 35.42 3.33
100 101 6.985653 TTATCTGGGAATGGAAAACACAAA 57.014 33.333 0.00 0.00 0.00 2.83
101 102 7.552050 TTATCTGGGAATGGAAAACACAAAT 57.448 32.000 0.00 0.00 0.00 2.32
102 103 8.657387 TTATCTGGGAATGGAAAACACAAATA 57.343 30.769 0.00 0.00 0.00 1.40
103 104 6.985653 TCTGGGAATGGAAAACACAAATAA 57.014 33.333 0.00 0.00 0.00 1.40
104 105 7.552050 TCTGGGAATGGAAAACACAAATAAT 57.448 32.000 0.00 0.00 0.00 1.28
105 106 7.385267 TCTGGGAATGGAAAACACAAATAATG 58.615 34.615 0.00 0.00 0.00 1.90
106 107 6.471146 TGGGAATGGAAAACACAAATAATGG 58.529 36.000 0.00 0.00 0.00 3.16
107 108 6.270927 TGGGAATGGAAAACACAAATAATGGA 59.729 34.615 0.00 0.00 0.00 3.41
108 109 7.037730 TGGGAATGGAAAACACAAATAATGGAT 60.038 33.333 0.00 0.00 0.00 3.41
109 110 7.280652 GGGAATGGAAAACACAAATAATGGATG 59.719 37.037 0.00 0.00 0.00 3.51
110 111 7.201635 GGAATGGAAAACACAAATAATGGATGC 60.202 37.037 0.00 0.00 0.00 3.91
111 112 5.486526 TGGAAAACACAAATAATGGATGCC 58.513 37.500 0.00 0.00 0.00 4.40
112 113 5.012458 TGGAAAACACAAATAATGGATGCCA 59.988 36.000 0.00 0.00 38.19 4.92
113 114 5.351189 GGAAAACACAAATAATGGATGCCAC 59.649 40.000 0.00 0.00 35.80 5.01
114 115 3.781079 ACACAAATAATGGATGCCACG 57.219 42.857 0.00 0.00 35.80 4.94
115 116 2.426738 ACACAAATAATGGATGCCACGG 59.573 45.455 0.00 0.00 35.80 4.94
116 117 1.408702 ACAAATAATGGATGCCACGGC 59.591 47.619 0.00 0.00 35.80 5.68
117 118 0.667993 AAATAATGGATGCCACGGCG 59.332 50.000 4.80 4.80 45.51 6.46
118 119 0.179032 AATAATGGATGCCACGGCGA 60.179 50.000 16.62 0.00 45.51 5.54
119 120 0.036732 ATAATGGATGCCACGGCGAT 59.963 50.000 16.62 0.00 45.51 4.58
120 121 0.602638 TAATGGATGCCACGGCGATC 60.603 55.000 16.62 5.73 45.51 3.69
121 122 4.889856 TGGATGCCACGGCGATCG 62.890 66.667 16.62 11.69 45.51 3.69
130 131 2.995482 CGGCGATCGTGCAACTAC 59.005 61.111 17.81 0.00 36.28 2.73
131 132 1.803922 CGGCGATCGTGCAACTACA 60.804 57.895 17.81 0.00 36.28 2.74
132 133 1.742900 CGGCGATCGTGCAACTACAG 61.743 60.000 17.81 0.00 36.28 2.74
133 134 0.736325 GGCGATCGTGCAACTACAGT 60.736 55.000 17.81 0.00 36.28 3.55
134 135 0.366871 GCGATCGTGCAACTACAGTG 59.633 55.000 17.81 0.00 34.15 3.66
135 136 0.992072 CGATCGTGCAACTACAGTGG 59.008 55.000 7.03 0.00 31.75 4.00
136 137 0.721718 GATCGTGCAACTACAGTGGC 59.278 55.000 1.54 1.54 45.10 5.01
140 141 3.169198 GCAACTACAGTGGCGCTC 58.831 61.111 7.64 0.45 34.97 5.03
141 142 2.730672 GCAACTACAGTGGCGCTCG 61.731 63.158 7.64 0.00 34.97 5.03
142 143 1.372997 CAACTACAGTGGCGCTCGT 60.373 57.895 7.64 2.95 0.00 4.18
143 144 0.109458 CAACTACAGTGGCGCTCGTA 60.109 55.000 7.64 4.03 0.00 3.43
144 145 0.599558 AACTACAGTGGCGCTCGTAA 59.400 50.000 7.64 0.00 0.00 3.18
145 146 0.170561 ACTACAGTGGCGCTCGTAAG 59.829 55.000 7.64 0.80 0.00 2.34
205 206 9.447157 AGGAAAATTGAAAGAAAATTTCACACA 57.553 25.926 8.55 2.16 38.05 3.72
213 214 9.190858 TGAAAGAAAATTTCACACAAATATCCG 57.809 29.630 8.55 0.00 33.90 4.18
214 215 9.191995 GAAAGAAAATTTCACACAAATATCCGT 57.808 29.630 8.55 0.00 0.00 4.69
215 216 8.519492 AAGAAAATTTCACACAAATATCCGTG 57.481 30.769 8.55 3.54 39.10 4.94
217 218 8.788806 AGAAAATTTCACACAAATATCCGTGTA 58.211 29.630 8.55 0.00 44.34 2.90
218 219 9.400638 GAAAATTTCACACAAATATCCGTGTAA 57.599 29.630 9.17 3.54 44.34 2.41
219 220 9.751542 AAAATTTCACACAAATATCCGTGTAAA 57.248 25.926 9.17 10.15 44.34 2.01
220 221 9.921637 AAATTTCACACAAATATCCGTGTAAAT 57.078 25.926 9.17 11.40 44.34 1.40
221 222 9.921637 AATTTCACACAAATATCCGTGTAAATT 57.078 25.926 17.88 17.88 44.34 1.82
222 223 8.958175 TTTCACACAAATATCCGTGTAAATTC 57.042 30.769 9.17 0.00 44.34 2.17
223 224 7.674471 TCACACAAATATCCGTGTAAATTCA 57.326 32.000 9.17 0.00 44.34 2.57
224 225 7.523219 TCACACAAATATCCGTGTAAATTCAC 58.477 34.615 9.17 0.00 44.34 3.18
225 226 7.173390 TCACACAAATATCCGTGTAAATTCACA 59.827 33.333 9.17 0.00 44.34 3.58
226 227 7.967854 CACACAAATATCCGTGTAAATTCACAT 59.032 33.333 9.17 0.00 44.34 3.21
227 228 7.967854 ACACAAATATCCGTGTAAATTCACATG 59.032 33.333 8.04 0.00 44.32 3.21
228 229 8.180920 CACAAATATCCGTGTAAATTCACATGA 58.819 33.333 2.23 0.00 37.59 3.07
229 230 8.735315 ACAAATATCCGTGTAAATTCACATGAA 58.265 29.630 2.23 0.00 37.59 2.57
230 231 9.734620 CAAATATCCGTGTAAATTCACATGAAT 57.265 29.630 2.23 1.11 45.91 2.57
233 234 9.778741 ATATCCGTGTAAATTCACATGAATAGT 57.221 29.630 7.52 2.47 43.41 2.12
235 236 9.607988 ATCCGTGTAAATTCACATGAATAGTAA 57.392 29.630 7.52 0.00 43.41 2.24
236 237 9.438228 TCCGTGTAAATTCACATGAATAGTAAA 57.562 29.630 7.52 0.00 43.41 2.01
260 261 9.918630 AAATCCATTCTTCTTTTACTTCATGTG 57.081 29.630 0.00 0.00 0.00 3.21
261 262 6.913170 TCCATTCTTCTTTTACTTCATGTGC 58.087 36.000 0.00 0.00 0.00 4.57
262 263 6.716628 TCCATTCTTCTTTTACTTCATGTGCT 59.283 34.615 0.00 0.00 0.00 4.40
263 264 6.805271 CCATTCTTCTTTTACTTCATGTGCTG 59.195 38.462 0.00 0.00 0.00 4.41
264 265 5.947228 TCTTCTTTTACTTCATGTGCTGG 57.053 39.130 0.00 0.00 0.00 4.85
265 266 4.761739 TCTTCTTTTACTTCATGTGCTGGG 59.238 41.667 0.00 0.00 0.00 4.45
266 267 2.819608 TCTTTTACTTCATGTGCTGGGC 59.180 45.455 0.00 0.00 0.00 5.36
267 268 1.164411 TTTACTTCATGTGCTGGGCG 58.836 50.000 0.00 0.00 0.00 6.13
268 269 1.305219 TTACTTCATGTGCTGGGCGC 61.305 55.000 0.00 0.00 39.75 6.53
269 270 2.184020 TACTTCATGTGCTGGGCGCT 62.184 55.000 7.64 0.00 40.03 5.92
270 271 2.747460 TTCATGTGCTGGGCGCTC 60.747 61.111 7.64 2.47 40.03 5.03
271 272 4.783621 TCATGTGCTGGGCGCTCC 62.784 66.667 3.94 6.36 40.03 4.70
272 273 4.790962 CATGTGCTGGGCGCTCCT 62.791 66.667 3.94 0.00 40.03 3.69
273 274 4.039092 ATGTGCTGGGCGCTCCTT 62.039 61.111 3.94 0.00 40.03 3.36
276 277 4.269523 TGCTGGGCGCTCCTTGTT 62.270 61.111 3.94 0.00 40.11 2.83
277 278 3.435186 GCTGGGCGCTCCTTGTTC 61.435 66.667 3.94 0.00 36.20 3.18
278 279 2.348998 CTGGGCGCTCCTTGTTCT 59.651 61.111 3.94 0.00 36.20 3.01
279 280 1.743252 CTGGGCGCTCCTTGTTCTC 60.743 63.158 3.94 0.00 36.20 2.87
280 281 2.436824 GGGCGCTCCTTGTTCTCC 60.437 66.667 7.64 0.00 0.00 3.71
281 282 2.347490 GGCGCTCCTTGTTCTCCA 59.653 61.111 7.64 0.00 0.00 3.86
282 283 1.743252 GGCGCTCCTTGTTCTCCAG 60.743 63.158 7.64 0.00 0.00 3.86
283 284 2.394563 GCGCTCCTTGTTCTCCAGC 61.395 63.158 0.00 0.00 0.00 4.85
284 285 1.004560 CGCTCCTTGTTCTCCAGCA 60.005 57.895 0.00 0.00 0.00 4.41
285 286 0.392193 CGCTCCTTGTTCTCCAGCAT 60.392 55.000 0.00 0.00 0.00 3.79
286 287 1.831580 GCTCCTTGTTCTCCAGCATT 58.168 50.000 0.00 0.00 0.00 3.56
287 288 2.165998 GCTCCTTGTTCTCCAGCATTT 58.834 47.619 0.00 0.00 0.00 2.32
288 289 2.560105 GCTCCTTGTTCTCCAGCATTTT 59.440 45.455 0.00 0.00 0.00 1.82
289 290 3.613432 GCTCCTTGTTCTCCAGCATTTTG 60.613 47.826 0.00 0.00 0.00 2.44
290 291 2.297033 TCCTTGTTCTCCAGCATTTTGC 59.703 45.455 0.00 0.00 45.46 3.68
301 302 2.730550 GCATTTTGCTTGCTACCACT 57.269 45.000 0.00 0.00 40.96 4.00
302 303 3.030668 GCATTTTGCTTGCTACCACTT 57.969 42.857 0.00 0.00 40.96 3.16
303 304 2.733026 GCATTTTGCTTGCTACCACTTG 59.267 45.455 0.00 0.00 40.96 3.16
304 305 3.319755 CATTTTGCTTGCTACCACTTGG 58.680 45.455 0.00 0.00 42.17 3.61
305 306 0.673437 TTTGCTTGCTACCACTTGGC 59.327 50.000 0.00 0.00 39.32 4.52
306 307 1.178534 TTGCTTGCTACCACTTGGCC 61.179 55.000 0.00 0.00 39.32 5.36
307 308 1.303643 GCTTGCTACCACTTGGCCT 60.304 57.895 3.32 0.00 39.32 5.19
308 309 0.035439 GCTTGCTACCACTTGGCCTA 60.035 55.000 3.32 0.00 39.32 3.93
309 310 1.408822 GCTTGCTACCACTTGGCCTAT 60.409 52.381 3.32 0.00 39.32 2.57
310 311 2.158813 GCTTGCTACCACTTGGCCTATA 60.159 50.000 3.32 0.00 39.32 1.31
311 312 3.467803 CTTGCTACCACTTGGCCTATAC 58.532 50.000 3.32 0.00 39.32 1.47
312 313 2.759355 TGCTACCACTTGGCCTATACT 58.241 47.619 3.32 0.00 39.32 2.12
313 314 3.112263 TGCTACCACTTGGCCTATACTT 58.888 45.455 3.32 0.00 39.32 2.24
314 315 4.291792 TGCTACCACTTGGCCTATACTTA 58.708 43.478 3.32 0.00 39.32 2.24
315 316 4.717778 TGCTACCACTTGGCCTATACTTAA 59.282 41.667 3.32 0.00 39.32 1.85
316 317 5.368523 TGCTACCACTTGGCCTATACTTAAT 59.631 40.000 3.32 0.00 39.32 1.40
317 318 6.126594 TGCTACCACTTGGCCTATACTTAATT 60.127 38.462 3.32 0.00 39.32 1.40
318 319 6.427242 GCTACCACTTGGCCTATACTTAATTC 59.573 42.308 3.32 0.00 39.32 2.17
319 320 6.576778 ACCACTTGGCCTATACTTAATTCT 57.423 37.500 3.32 0.00 39.32 2.40
320 321 6.970191 ACCACTTGGCCTATACTTAATTCTT 58.030 36.000 3.32 0.00 39.32 2.52
321 322 7.410991 ACCACTTGGCCTATACTTAATTCTTT 58.589 34.615 3.32 0.00 39.32 2.52
322 323 7.893833 ACCACTTGGCCTATACTTAATTCTTTT 59.106 33.333 3.32 0.00 39.32 2.27
323 324 9.403583 CCACTTGGCCTATACTTAATTCTTTTA 57.596 33.333 3.32 0.00 0.00 1.52
338 339 7.967890 AATTCTTTTATTTTTGTGCAGGAGG 57.032 32.000 0.00 0.00 0.00 4.30
339 340 6.478512 TTCTTTTATTTTTGTGCAGGAGGT 57.521 33.333 0.00 0.00 0.00 3.85
340 341 7.589958 TTCTTTTATTTTTGTGCAGGAGGTA 57.410 32.000 0.00 0.00 0.00 3.08
341 342 7.775053 TCTTTTATTTTTGTGCAGGAGGTAT 57.225 32.000 0.00 0.00 0.00 2.73
342 343 7.601856 TCTTTTATTTTTGTGCAGGAGGTATG 58.398 34.615 0.00 0.00 0.00 2.39
343 344 6.909550 TTTATTTTTGTGCAGGAGGTATGT 57.090 33.333 0.00 0.00 0.00 2.29
344 345 8.410673 TTTTATTTTTGTGCAGGAGGTATGTA 57.589 30.769 0.00 0.00 0.00 2.29
345 346 5.897377 ATTTTTGTGCAGGAGGTATGTAC 57.103 39.130 0.00 0.00 34.31 2.90
346 347 4.634012 TTTTGTGCAGGAGGTATGTACT 57.366 40.909 0.00 0.00 34.74 2.73
347 348 4.634012 TTTGTGCAGGAGGTATGTACTT 57.366 40.909 0.00 0.00 34.74 2.24
348 349 4.634012 TTGTGCAGGAGGTATGTACTTT 57.366 40.909 0.00 0.00 34.74 2.66
349 350 3.937814 TGTGCAGGAGGTATGTACTTTG 58.062 45.455 0.00 0.00 34.74 2.77
350 351 3.326588 TGTGCAGGAGGTATGTACTTTGT 59.673 43.478 0.00 0.00 34.74 2.83
351 352 4.202419 TGTGCAGGAGGTATGTACTTTGTT 60.202 41.667 0.00 0.00 34.74 2.83
352 353 4.392138 GTGCAGGAGGTATGTACTTTGTTC 59.608 45.833 0.00 0.00 31.44 3.18
353 354 4.286032 TGCAGGAGGTATGTACTTTGTTCT 59.714 41.667 0.00 0.00 0.00 3.01
354 355 5.221843 TGCAGGAGGTATGTACTTTGTTCTT 60.222 40.000 0.00 0.00 0.00 2.52
355 356 5.705905 GCAGGAGGTATGTACTTTGTTCTTT 59.294 40.000 0.00 0.00 0.00 2.52
356 357 6.128254 GCAGGAGGTATGTACTTTGTTCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
357 358 7.162082 CAGGAGGTATGTACTTTGTTCTTTCT 58.838 38.462 0.00 0.00 0.00 2.52
358 359 8.311836 CAGGAGGTATGTACTTTGTTCTTTCTA 58.688 37.037 0.00 0.00 0.00 2.10
359 360 8.312564 AGGAGGTATGTACTTTGTTCTTTCTAC 58.687 37.037 0.00 0.00 0.00 2.59
360 361 8.312564 GGAGGTATGTACTTTGTTCTTTCTACT 58.687 37.037 0.00 0.00 0.00 2.57
416 417 9.970553 ATCTAATAATAGAATGGACATGCATGT 57.029 29.630 31.82 31.82 41.38 3.21
437 438 6.993786 TGTAATGAGTTCACACACAAAAGA 57.006 33.333 0.00 0.00 0.00 2.52
438 439 7.384439 TGTAATGAGTTCACACACAAAAGAA 57.616 32.000 0.00 0.00 0.00 2.52
439 440 7.821652 TGTAATGAGTTCACACACAAAAGAAA 58.178 30.769 0.00 0.00 0.00 2.52
440 441 8.300286 TGTAATGAGTTCACACACAAAAGAAAA 58.700 29.630 0.00 0.00 0.00 2.29
441 442 9.134734 GTAATGAGTTCACACACAAAAGAAAAA 57.865 29.630 0.00 0.00 0.00 1.94
473 474 0.035881 CATGGGATCGGAGTGGATGG 59.964 60.000 0.00 0.00 0.00 3.51
481 482 1.848388 TCGGAGTGGATGGTAGACCTA 59.152 52.381 0.00 0.00 36.82 3.08
505 509 2.910688 ACTACAACACCTGTCCAGTG 57.089 50.000 0.00 0.00 39.64 3.66
506 510 1.416401 ACTACAACACCTGTCCAGTGG 59.584 52.381 1.40 1.40 39.64 4.00
507 511 1.416401 CTACAACACCTGTCCAGTGGT 59.584 52.381 9.54 0.00 39.64 4.16
508 512 1.502690 ACAACACCTGTCCAGTGGTA 58.497 50.000 9.54 0.00 29.87 3.25
509 513 1.841277 ACAACACCTGTCCAGTGGTAA 59.159 47.619 9.54 0.00 29.87 2.85
510 514 2.218603 CAACACCTGTCCAGTGGTAAC 58.781 52.381 9.54 1.02 34.79 2.50
511 515 0.391597 ACACCTGTCCAGTGGTAACG 59.608 55.000 9.54 0.00 42.51 3.18
512 516 0.391597 CACCTGTCCAGTGGTAACGT 59.608 55.000 9.54 0.00 42.51 3.99
513 517 1.125633 ACCTGTCCAGTGGTAACGTT 58.874 50.000 9.54 5.88 42.51 3.99
514 518 1.069668 ACCTGTCCAGTGGTAACGTTC 59.930 52.381 2.82 0.00 42.51 3.95
515 519 1.607251 CCTGTCCAGTGGTAACGTTCC 60.607 57.143 2.82 6.96 42.51 3.62
547 551 2.226437 CCGCTGCTGTCTGTTGTTAATT 59.774 45.455 0.00 0.00 0.00 1.40
664 668 0.178861 AGACCCATGGTGGACTCCTT 60.179 55.000 11.73 0.00 40.96 3.36
694 698 3.278574 CCAATTTCTTGTCCGGCAGATA 58.721 45.455 0.00 0.00 0.00 1.98
695 699 3.065371 CCAATTTCTTGTCCGGCAGATAC 59.935 47.826 0.00 0.00 0.00 2.24
696 700 3.627395 ATTTCTTGTCCGGCAGATACA 57.373 42.857 0.00 0.00 0.00 2.29
697 701 3.627395 TTTCTTGTCCGGCAGATACAT 57.373 42.857 0.00 0.00 0.00 2.29
707 711 3.187227 CCGGCAGATACATAAACTCATGC 59.813 47.826 0.00 0.00 0.00 4.06
769 773 2.586635 ACGAAGACGCGCAAACCA 60.587 55.556 5.73 0.00 43.96 3.67
817 821 2.613474 CCACCACCGTCCGATCTAAAAA 60.613 50.000 0.00 0.00 0.00 1.94
833 837 4.910585 AATCACCGCGCCCGATCC 62.911 66.667 0.00 0.00 36.29 3.36
874 878 2.342279 CGTTGCGGACTCCTCCAA 59.658 61.111 0.00 0.00 36.12 3.53
905 909 3.388024 ACTTCTCATCCGGCAAGCTATAA 59.612 43.478 0.00 0.00 0.00 0.98
908 912 4.127171 TCTCATCCGGCAAGCTATAAAAC 58.873 43.478 0.00 0.00 0.00 2.43
909 913 3.211045 TCATCCGGCAAGCTATAAAACC 58.789 45.455 0.00 0.00 0.00 3.27
987 1000 2.395690 CACGAAATCGCGCAGACC 59.604 61.111 8.75 0.00 44.43 3.85
988 1001 3.179265 ACGAAATCGCGCAGACCG 61.179 61.111 8.75 12.32 44.43 4.79
989 1002 2.878991 CGAAATCGCGCAGACCGA 60.879 61.111 8.75 0.00 40.02 4.69
990 1003 2.849966 CGAAATCGCGCAGACCGAG 61.850 63.158 8.75 0.00 40.02 4.63
991 1004 3.144120 GAAATCGCGCAGACCGAGC 62.144 63.158 8.75 0.00 40.02 5.03
992 1005 3.932580 AAATCGCGCAGACCGAGCA 62.933 57.895 8.75 0.00 41.10 4.26
999 1012 4.662961 CAGACCGAGCACGCACCA 62.663 66.667 0.00 0.00 38.29 4.17
1020 1033 2.162338 AACGATCCCGGTTCGCTTCA 62.162 55.000 20.29 0.00 40.19 3.02
1021 1034 1.878522 CGATCCCGGTTCGCTTCAG 60.879 63.158 10.62 0.00 0.00 3.02
1039 1059 2.756691 TAGCTAACTCGCCGCCCA 60.757 61.111 0.00 0.00 0.00 5.36
1192 1212 0.028505 CGAGGTCGGTGTACATACGG 59.971 60.000 18.68 4.35 35.37 4.02
1259 1280 1.226746 GTTCTTGTGTTACGCCTGCT 58.773 50.000 0.00 0.00 0.00 4.24
1268 1289 1.135689 GTTACGCCTGCTGATTGGTTG 60.136 52.381 0.00 0.00 0.00 3.77
1277 1298 2.089980 GCTGATTGGTTGTGCAGAGAT 58.910 47.619 0.00 0.00 0.00 2.75
1490 1547 9.144085 CGTACGAATATCTTGTTTTGCTTAATC 57.856 33.333 10.44 0.00 0.00 1.75
1517 1574 7.840342 TCTTAATCTGAACAGAGCTTCAATC 57.160 36.000 10.26 0.00 41.33 2.67
1518 1575 6.533012 TCTTAATCTGAACAGAGCTTCAATCG 59.467 38.462 10.26 0.00 41.33 3.34
1586 1643 3.768757 TGAACCTTTGGGATGGCATAAAG 59.231 43.478 12.30 12.30 36.25 1.85
1660 1731 4.592942 TCTTATCTTGCTTGCAGGTTGAT 58.407 39.130 4.72 2.11 0.00 2.57
1981 2399 6.039829 TGTCGCAGTACATCAAATAGAGAGAT 59.960 38.462 0.00 0.00 0.00 2.75
1988 2406 6.669125 ACATCAAATAGAGAGATCAGAGGG 57.331 41.667 0.00 0.00 0.00 4.30
1991 2409 7.346698 ACATCAAATAGAGAGATCAGAGGGAAA 59.653 37.037 0.00 0.00 0.00 3.13
2097 2657 5.240844 TGGCTAGTTTGGCTTAGTCTTTTTC 59.759 40.000 0.00 0.00 0.00 2.29
2165 2725 5.596361 TGACTCCTGCTTTGGTTAAATTTCA 59.404 36.000 0.00 0.00 0.00 2.69
2166 2726 5.842907 ACTCCTGCTTTGGTTAAATTTCAC 58.157 37.500 0.00 0.00 0.00 3.18
2173 2733 5.117135 GCTTTGGTTAAATTTCACGAGCTTC 59.883 40.000 12.85 0.00 0.00 3.86
2225 2786 8.131847 TCCCAATGATGTCAAAATATTTGTGA 57.868 30.769 0.39 5.40 0.00 3.58
2230 2791 7.156876 TGATGTCAAAATATTTGTGAGGGTC 57.843 36.000 0.39 6.91 0.00 4.46
2264 2826 4.344102 GGTGGTCAGAGTAGGCAATATGTA 59.656 45.833 0.00 0.00 0.00 2.29
2270 2832 5.538813 TCAGAGTAGGCAATATGTATCGGTT 59.461 40.000 0.00 0.00 0.00 4.44
2407 3684 2.056906 ATTACCCGGGCCTCTGCATC 62.057 60.000 24.08 0.00 40.13 3.91
2413 3690 1.679139 CGGGCCTCTGCATCAAAATA 58.321 50.000 0.84 0.00 40.13 1.40
2496 3804 2.102588 ACGCAAAGTCACCTTAGTGTCT 59.897 45.455 0.00 0.00 43.06 3.41
2498 3806 3.059597 CGCAAAGTCACCTTAGTGTCTTG 60.060 47.826 6.49 4.26 47.00 3.02
2508 3816 3.325870 CTTAGTGTCTTGACCGCATCAA 58.674 45.455 0.83 0.83 45.39 2.57
2509 3817 1.512926 AGTGTCTTGACCGCATCAAC 58.487 50.000 0.00 0.00 42.62 3.18
2524 3832 3.627577 GCATCAACGGACACCATCTAATT 59.372 43.478 0.00 0.00 0.00 1.40
2525 3833 4.260784 GCATCAACGGACACCATCTAATTC 60.261 45.833 0.00 0.00 0.00 2.17
2526 3834 4.545208 TCAACGGACACCATCTAATTCA 57.455 40.909 0.00 0.00 0.00 2.57
2533 3841 2.578021 ACACCATCTAATTCAGTGGCCT 59.422 45.455 3.32 0.00 35.11 5.19
2536 3844 3.266772 ACCATCTAATTCAGTGGCCTCAA 59.733 43.478 3.32 0.00 35.11 3.02
2548 3856 2.750350 CCTCAAGAAGCCACCCGT 59.250 61.111 0.00 0.00 0.00 5.28
2561 3869 2.032528 CCCGTCTGGCAAGCTGAA 59.967 61.111 0.00 0.00 0.00 3.02
2562 3870 1.600636 CCCGTCTGGCAAGCTGAAA 60.601 57.895 0.00 0.00 0.00 2.69
2563 3871 1.580845 CCCGTCTGGCAAGCTGAAAG 61.581 60.000 0.00 0.00 0.00 2.62
2564 3872 0.886490 CCGTCTGGCAAGCTGAAAGT 60.886 55.000 0.00 0.00 35.30 2.66
2565 3873 1.608025 CCGTCTGGCAAGCTGAAAGTA 60.608 52.381 0.00 0.00 35.30 2.24
2566 3874 1.461127 CGTCTGGCAAGCTGAAAGTAC 59.539 52.381 0.00 0.00 35.30 2.73
2567 3875 2.772287 GTCTGGCAAGCTGAAAGTACT 58.228 47.619 0.00 0.00 35.30 2.73
2568 3876 3.614150 CGTCTGGCAAGCTGAAAGTACTA 60.614 47.826 0.00 0.00 35.30 1.82
2570 3878 4.152580 GTCTGGCAAGCTGAAAGTACTAAC 59.847 45.833 0.00 0.00 35.30 2.34
2571 3879 4.040461 TCTGGCAAGCTGAAAGTACTAACT 59.960 41.667 0.00 0.00 37.65 2.24
2572 3880 5.245301 TCTGGCAAGCTGAAAGTACTAACTA 59.755 40.000 0.00 0.00 33.75 2.24
2573 3881 5.479306 TGGCAAGCTGAAAGTACTAACTAG 58.521 41.667 0.00 0.00 33.75 2.57
2574 3882 5.011738 TGGCAAGCTGAAAGTACTAACTAGT 59.988 40.000 0.00 0.00 40.24 2.57
2575 3883 5.577554 GGCAAGCTGAAAGTACTAACTAGTC 59.422 44.000 0.00 0.00 37.73 2.59
2576 3884 6.391537 GCAAGCTGAAAGTACTAACTAGTCT 58.608 40.000 0.00 0.00 37.73 3.24
2577 3885 7.362747 GGCAAGCTGAAAGTACTAACTAGTCTA 60.363 40.741 0.00 0.00 37.73 2.59
2578 3886 7.698970 GCAAGCTGAAAGTACTAACTAGTCTAG 59.301 40.741 5.27 5.27 37.73 2.43
2579 3887 7.868906 AGCTGAAAGTACTAACTAGTCTAGG 57.131 40.000 11.61 0.00 37.73 3.02
2580 3888 6.319405 AGCTGAAAGTACTAACTAGTCTAGGC 59.681 42.308 11.61 0.00 37.73 3.93
2590 3899 3.277715 ACTAGTCTAGGCGTCCTACAAC 58.722 50.000 11.61 4.35 34.61 3.32
2602 3911 0.738063 CCTACAACGCACACCGCATA 60.738 55.000 0.00 0.00 42.60 3.14
2611 3920 1.736645 ACACCGCATACGCACACTC 60.737 57.895 0.00 0.00 38.40 3.51
2619 3928 2.034685 GCATACGCACACTCTAGGATCA 59.965 50.000 0.00 0.00 38.36 2.92
2623 3932 0.249238 GCACACTCTAGGATCAGCCG 60.249 60.000 0.00 0.00 43.43 5.52
2624 3933 0.249238 CACACTCTAGGATCAGCCGC 60.249 60.000 0.00 0.00 43.43 6.53
2626 3935 2.196925 ACTCTAGGATCAGCCGCCG 61.197 63.158 0.00 0.00 43.43 6.46
2627 3936 3.565910 CTCTAGGATCAGCCGCCGC 62.566 68.421 0.00 0.00 43.43 6.53
2647 3978 4.142752 CCGCTGGATCATTGCATAAGTATG 60.143 45.833 0.00 0.00 36.78 2.39
2661 3992 7.537715 TGCATAAGTATGTGGTCTTCAAAATG 58.462 34.615 0.54 0.00 36.11 2.32
2674 4005 6.654582 GGTCTTCAAAATGTTATTTTGGCCAT 59.345 34.615 20.56 0.00 39.25 4.40
2675 4006 7.174772 GGTCTTCAAAATGTTATTTTGGCCATT 59.825 33.333 20.56 0.00 39.25 3.16
2676 4007 9.213799 GTCTTCAAAATGTTATTTTGGCCATTA 57.786 29.630 20.56 0.00 39.25 1.90
2677 4008 9.784531 TCTTCAAAATGTTATTTTGGCCATTAA 57.215 25.926 20.56 4.49 39.25 1.40
2685 4016 9.956640 ATGTTATTTTGGCCATTAATTTCAAGA 57.043 25.926 6.09 0.74 0.00 3.02
2686 4017 9.956640 TGTTATTTTGGCCATTAATTTCAAGAT 57.043 25.926 6.09 0.00 0.00 2.40
2689 4020 8.647143 ATTTTGGCCATTAATTTCAAGATACG 57.353 30.769 6.09 0.00 0.00 3.06
2690 4021 6.767524 TTGGCCATTAATTTCAAGATACGT 57.232 33.333 6.09 0.00 0.00 3.57
2691 4022 6.130298 TGGCCATTAATTTCAAGATACGTG 57.870 37.500 0.00 0.00 0.00 4.49
2692 4023 5.650266 TGGCCATTAATTTCAAGATACGTGT 59.350 36.000 0.00 0.00 0.00 4.49
2693 4024 6.824196 TGGCCATTAATTTCAAGATACGTGTA 59.176 34.615 0.00 0.00 0.00 2.90
2694 4025 7.500892 TGGCCATTAATTTCAAGATACGTGTAT 59.499 33.333 0.00 0.00 0.00 2.29
2695 4026 8.995220 GGCCATTAATTTCAAGATACGTGTATA 58.005 33.333 0.00 0.00 0.00 1.47
2701 4032 6.897259 TTTCAAGATACGTGTATAACTGGC 57.103 37.500 0.00 0.00 0.00 4.85
2702 4033 5.585820 TCAAGATACGTGTATAACTGGCA 57.414 39.130 0.00 0.00 0.00 4.92
2703 4034 5.968254 TCAAGATACGTGTATAACTGGCAA 58.032 37.500 0.00 0.00 0.00 4.52
2704 4035 6.040247 TCAAGATACGTGTATAACTGGCAAG 58.960 40.000 0.00 0.00 0.00 4.01
2705 4036 5.593679 AGATACGTGTATAACTGGCAAGT 57.406 39.130 0.00 0.00 38.71 3.16
2706 4037 5.348986 AGATACGTGTATAACTGGCAAGTG 58.651 41.667 0.00 0.00 36.51 3.16
2707 4038 3.671008 ACGTGTATAACTGGCAAGTGA 57.329 42.857 0.00 0.00 36.51 3.41
2708 4039 3.997762 ACGTGTATAACTGGCAAGTGAA 58.002 40.909 0.00 0.00 36.51 3.18
2709 4040 3.744426 ACGTGTATAACTGGCAAGTGAAC 59.256 43.478 0.00 0.00 36.51 3.18
2710 4041 3.124636 CGTGTATAACTGGCAAGTGAACC 59.875 47.826 0.00 0.00 36.51 3.62
2711 4042 3.124636 GTGTATAACTGGCAAGTGAACCG 59.875 47.826 0.00 0.00 36.51 4.44
2712 4043 1.165270 ATAACTGGCAAGTGAACCGC 58.835 50.000 0.00 0.00 36.51 5.68
2713 4044 0.179043 TAACTGGCAAGTGAACCGCA 60.179 50.000 0.00 0.00 36.51 5.69
2714 4045 0.823356 AACTGGCAAGTGAACCGCAT 60.823 50.000 0.00 0.00 36.51 4.73
2715 4046 1.210931 CTGGCAAGTGAACCGCATG 59.789 57.895 0.00 0.00 0.00 4.06
2716 4047 1.518056 CTGGCAAGTGAACCGCATGT 61.518 55.000 0.00 0.00 0.00 3.21
2717 4048 1.106351 TGGCAAGTGAACCGCATGTT 61.106 50.000 0.00 0.00 40.81 2.71
2718 4049 0.031994 GGCAAGTGAACCGCATGTTT 59.968 50.000 0.00 0.00 37.29 2.83
2719 4050 1.130955 GCAAGTGAACCGCATGTTTG 58.869 50.000 0.00 0.00 37.29 2.93
2720 4051 1.535860 GCAAGTGAACCGCATGTTTGT 60.536 47.619 0.00 0.00 37.29 2.83
2721 4052 2.118683 CAAGTGAACCGCATGTTTGTG 58.881 47.619 0.00 0.00 37.29 3.33
2722 4053 0.030638 AGTGAACCGCATGTTTGTGC 59.969 50.000 0.00 0.00 37.29 4.57
2879 5676 7.719778 TCATGGTCTTTCATAATGATCTTCG 57.280 36.000 0.00 0.00 0.00 3.79
2880 5677 7.500141 TCATGGTCTTTCATAATGATCTTCGA 58.500 34.615 0.00 0.00 0.00 3.71
2910 5707 3.676646 ACTTTTATCGTTCGCCACACTAC 59.323 43.478 0.00 0.00 0.00 2.73
2930 5727 7.352739 CACTACAGTGGTGTTTTTCTATTGAC 58.647 38.462 8.88 0.00 42.10 3.18
2989 5786 2.686915 TGTGCATGTGTGTGTCATTTGA 59.313 40.909 0.00 0.00 0.00 2.69
3061 5858 6.989169 GCCATAACATTCTCTCTTACTCACAT 59.011 38.462 0.00 0.00 0.00 3.21
3075 5872 8.846943 TCTTACTCACATTTGTCACATATTGT 57.153 30.769 0.00 0.00 0.00 2.71
3089 5886 7.822334 TGTCACATATTGTTTCTTTCTATCCGT 59.178 33.333 0.00 0.00 0.00 4.69
3094 5891 8.883731 CATATTGTTTCTTTCTATCCGTGTCTT 58.116 33.333 0.00 0.00 0.00 3.01
3099 5896 6.780706 TTCTTTCTATCCGTGTCTTTGTTC 57.219 37.500 0.00 0.00 0.00 3.18
3104 5901 6.539649 TCTATCCGTGTCTTTGTTCTTTTG 57.460 37.500 0.00 0.00 0.00 2.44
3106 5903 5.576447 ATCCGTGTCTTTGTTCTTTTGTT 57.424 34.783 0.00 0.00 0.00 2.83
3107 5904 4.728534 TCCGTGTCTTTGTTCTTTTGTTG 58.271 39.130 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.485418 TCTTTCTCTACACAATACGCAAAAA 57.515 32.000 0.00 0.00 0.00 1.94
6 7 7.667043 ATTCTTTCTCTACACAATACGCAAA 57.333 32.000 0.00 0.00 0.00 3.68
7 8 8.766000 TTATTCTTTCTCTACACAATACGCAA 57.234 30.769 0.00 0.00 0.00 4.85
8 9 8.766000 TTTATTCTTTCTCTACACAATACGCA 57.234 30.769 0.00 0.00 0.00 5.24
65 66 9.659135 TCCATTCCCAGATAATGATTTATGTTT 57.341 29.630 0.00 0.00 36.61 2.83
66 67 9.659135 TTCCATTCCCAGATAATGATTTATGTT 57.341 29.630 0.00 0.00 36.61 2.71
67 68 9.659135 TTTCCATTCCCAGATAATGATTTATGT 57.341 29.630 0.00 0.00 36.61 2.29
70 71 9.486123 TGTTTTCCATTCCCAGATAATGATTTA 57.514 29.630 0.00 0.00 36.61 1.40
71 72 8.260114 GTGTTTTCCATTCCCAGATAATGATTT 58.740 33.333 0.00 0.00 36.61 2.17
72 73 7.399765 TGTGTTTTCCATTCCCAGATAATGATT 59.600 33.333 0.00 0.00 36.61 2.57
73 74 6.896860 TGTGTTTTCCATTCCCAGATAATGAT 59.103 34.615 0.00 0.00 36.61 2.45
74 75 6.252233 TGTGTTTTCCATTCCCAGATAATGA 58.748 36.000 0.00 0.00 36.61 2.57
75 76 6.528537 TGTGTTTTCCATTCCCAGATAATG 57.471 37.500 0.00 0.00 34.71 1.90
76 77 7.552050 TTTGTGTTTTCCATTCCCAGATAAT 57.448 32.000 0.00 0.00 0.00 1.28
77 78 6.985653 TTTGTGTTTTCCATTCCCAGATAA 57.014 33.333 0.00 0.00 0.00 1.75
78 79 8.657387 TTATTTGTGTTTTCCATTCCCAGATA 57.343 30.769 0.00 0.00 0.00 1.98
79 80 7.552050 TTATTTGTGTTTTCCATTCCCAGAT 57.448 32.000 0.00 0.00 0.00 2.90
80 81 6.985653 TTATTTGTGTTTTCCATTCCCAGA 57.014 33.333 0.00 0.00 0.00 3.86
81 82 6.594937 CCATTATTTGTGTTTTCCATTCCCAG 59.405 38.462 0.00 0.00 0.00 4.45
82 83 6.270927 TCCATTATTTGTGTTTTCCATTCCCA 59.729 34.615 0.00 0.00 0.00 4.37
83 84 6.706295 TCCATTATTTGTGTTTTCCATTCCC 58.294 36.000 0.00 0.00 0.00 3.97
84 85 7.201635 GCATCCATTATTTGTGTTTTCCATTCC 60.202 37.037 0.00 0.00 0.00 3.01
85 86 7.201635 GGCATCCATTATTTGTGTTTTCCATTC 60.202 37.037 0.00 0.00 0.00 2.67
86 87 6.598850 GGCATCCATTATTTGTGTTTTCCATT 59.401 34.615 0.00 0.00 0.00 3.16
87 88 6.114767 GGCATCCATTATTTGTGTTTTCCAT 58.885 36.000 0.00 0.00 0.00 3.41
88 89 5.012458 TGGCATCCATTATTTGTGTTTTCCA 59.988 36.000 0.00 0.00 0.00 3.53
89 90 5.351189 GTGGCATCCATTATTTGTGTTTTCC 59.649 40.000 0.00 0.00 35.28 3.13
90 91 5.062058 CGTGGCATCCATTATTTGTGTTTTC 59.938 40.000 0.00 0.00 35.28 2.29
91 92 4.928615 CGTGGCATCCATTATTTGTGTTTT 59.071 37.500 0.00 0.00 35.28 2.43
92 93 4.493547 CGTGGCATCCATTATTTGTGTTT 58.506 39.130 0.00 0.00 35.28 2.83
93 94 3.119173 CCGTGGCATCCATTATTTGTGTT 60.119 43.478 0.00 0.00 35.28 3.32
94 95 2.426738 CCGTGGCATCCATTATTTGTGT 59.573 45.455 0.00 0.00 35.28 3.72
95 96 2.799207 GCCGTGGCATCCATTATTTGTG 60.799 50.000 5.89 0.00 41.49 3.33
96 97 1.408702 GCCGTGGCATCCATTATTTGT 59.591 47.619 5.89 0.00 41.49 2.83
97 98 1.600164 CGCCGTGGCATCCATTATTTG 60.600 52.381 12.06 0.00 42.06 2.32
98 99 0.667993 CGCCGTGGCATCCATTATTT 59.332 50.000 12.06 0.00 42.06 1.40
99 100 0.179032 TCGCCGTGGCATCCATTATT 60.179 50.000 12.06 0.00 42.06 1.40
100 101 0.036732 ATCGCCGTGGCATCCATTAT 59.963 50.000 12.06 0.00 42.06 1.28
101 102 0.602638 GATCGCCGTGGCATCCATTA 60.603 55.000 12.06 0.00 42.06 1.90
102 103 1.893808 GATCGCCGTGGCATCCATT 60.894 57.895 12.06 0.00 42.06 3.16
103 104 2.281070 GATCGCCGTGGCATCCAT 60.281 61.111 12.06 0.00 42.06 3.41
104 105 4.889856 CGATCGCCGTGGCATCCA 62.890 66.667 12.06 0.00 42.06 3.41
113 114 1.742900 CTGTAGTTGCACGATCGCCG 61.743 60.000 16.60 7.99 45.44 6.46
114 115 0.736325 ACTGTAGTTGCACGATCGCC 60.736 55.000 16.60 7.25 0.00 5.54
115 116 0.366871 CACTGTAGTTGCACGATCGC 59.633 55.000 16.60 0.00 0.00 4.58
116 117 0.992072 CCACTGTAGTTGCACGATCG 59.008 55.000 14.88 14.88 0.00 3.69
117 118 0.721718 GCCACTGTAGTTGCACGATC 59.278 55.000 3.49 0.00 36.77 3.69
118 119 1.014044 CGCCACTGTAGTTGCACGAT 61.014 55.000 8.54 0.00 36.60 3.73
119 120 1.663388 CGCCACTGTAGTTGCACGA 60.663 57.895 8.54 0.00 36.60 4.35
120 121 2.853210 CGCCACTGTAGTTGCACG 59.147 61.111 8.54 0.00 36.60 5.34
121 122 1.901650 GAGCGCCACTGTAGTTGCAC 61.902 60.000 2.29 0.00 36.60 4.57
122 123 1.667830 GAGCGCCACTGTAGTTGCA 60.668 57.895 2.29 0.00 36.60 4.08
123 124 2.730672 CGAGCGCCACTGTAGTTGC 61.731 63.158 2.29 0.00 33.83 4.17
124 125 0.109458 TACGAGCGCCACTGTAGTTG 60.109 55.000 2.29 0.00 0.00 3.16
125 126 0.599558 TTACGAGCGCCACTGTAGTT 59.400 50.000 2.29 0.00 0.00 2.24
126 127 0.170561 CTTACGAGCGCCACTGTAGT 59.829 55.000 2.29 0.00 0.00 2.73
127 128 0.450583 TCTTACGAGCGCCACTGTAG 59.549 55.000 2.29 0.00 0.00 2.74
128 129 0.883153 TTCTTACGAGCGCCACTGTA 59.117 50.000 2.29 0.00 0.00 2.74
129 130 0.032952 TTTCTTACGAGCGCCACTGT 59.967 50.000 2.29 0.00 0.00 3.55
130 131 1.144969 TTTTCTTACGAGCGCCACTG 58.855 50.000 2.29 0.00 0.00 3.66
131 132 1.873698 TTTTTCTTACGAGCGCCACT 58.126 45.000 2.29 0.00 0.00 4.00
132 133 2.158841 TCATTTTTCTTACGAGCGCCAC 59.841 45.455 2.29 0.00 0.00 5.01
133 134 2.418692 TCATTTTTCTTACGAGCGCCA 58.581 42.857 2.29 0.00 0.00 5.69
134 135 3.124636 TCTTCATTTTTCTTACGAGCGCC 59.875 43.478 2.29 0.00 0.00 6.53
135 136 4.322101 TCTTCATTTTTCTTACGAGCGC 57.678 40.909 0.00 0.00 0.00 5.92
136 137 5.080068 GGTTCTTCATTTTTCTTACGAGCG 58.920 41.667 0.00 0.00 0.00 5.03
137 138 5.048991 TGGGTTCTTCATTTTTCTTACGAGC 60.049 40.000 0.00 0.00 0.00 5.03
138 139 6.554334 TGGGTTCTTCATTTTTCTTACGAG 57.446 37.500 0.00 0.00 0.00 4.18
139 140 8.801882 ATATGGGTTCTTCATTTTTCTTACGA 57.198 30.769 0.00 0.00 0.00 3.43
179 180 9.447157 TGTGTGAAATTTTCTTTCAATTTTCCT 57.553 25.926 10.33 0.00 39.76 3.36
187 188 9.190858 CGGATATTTGTGTGAAATTTTCTTTCA 57.809 29.630 10.33 4.88 36.21 2.69
188 189 9.191995 ACGGATATTTGTGTGAAATTTTCTTTC 57.808 29.630 10.33 2.66 0.00 2.62
189 190 8.977505 CACGGATATTTGTGTGAAATTTTCTTT 58.022 29.630 10.33 0.00 34.29 2.52
190 191 8.141268 ACACGGATATTTGTGTGAAATTTTCTT 58.859 29.630 11.72 0.00 46.87 2.52
191 192 7.657336 ACACGGATATTTGTGTGAAATTTTCT 58.343 30.769 11.72 0.00 46.87 2.52
192 193 7.867445 ACACGGATATTTGTGTGAAATTTTC 57.133 32.000 11.72 2.05 46.87 2.29
202 203 8.180920 TCATGTGAATTTACACGGATATTTGTG 58.819 33.333 5.03 6.70 42.86 3.33
203 204 8.275015 TCATGTGAATTTACACGGATATTTGT 57.725 30.769 5.03 0.00 42.86 2.83
204 205 9.734620 ATTCATGTGAATTTACACGGATATTTG 57.265 29.630 5.03 0.00 41.64 2.32
207 208 9.778741 ACTATTCATGTGAATTTACACGGATAT 57.221 29.630 12.95 6.17 41.64 1.63
209 210 9.607988 TTACTATTCATGTGAATTTACACGGAT 57.392 29.630 12.95 0.04 41.64 4.18
210 211 9.438228 TTTACTATTCATGTGAATTTACACGGA 57.562 29.630 12.95 4.04 41.64 4.69
234 235 9.918630 CACATGAAGTAAAAGAAGAATGGATTT 57.081 29.630 0.00 0.00 0.00 2.17
235 236 8.031277 GCACATGAAGTAAAAGAAGAATGGATT 58.969 33.333 0.00 0.00 0.00 3.01
236 237 7.395489 AGCACATGAAGTAAAAGAAGAATGGAT 59.605 33.333 0.00 0.00 0.00 3.41
237 238 6.716628 AGCACATGAAGTAAAAGAAGAATGGA 59.283 34.615 0.00 0.00 0.00 3.41
238 239 6.805271 CAGCACATGAAGTAAAAGAAGAATGG 59.195 38.462 0.00 0.00 0.00 3.16
239 240 6.805271 CCAGCACATGAAGTAAAAGAAGAATG 59.195 38.462 0.00 0.00 0.00 2.67
240 241 6.071728 CCCAGCACATGAAGTAAAAGAAGAAT 60.072 38.462 0.00 0.00 0.00 2.40
241 242 5.241506 CCCAGCACATGAAGTAAAAGAAGAA 59.758 40.000 0.00 0.00 0.00 2.52
242 243 4.761739 CCCAGCACATGAAGTAAAAGAAGA 59.238 41.667 0.00 0.00 0.00 2.87
243 244 4.616835 GCCCAGCACATGAAGTAAAAGAAG 60.617 45.833 0.00 0.00 0.00 2.85
244 245 3.255642 GCCCAGCACATGAAGTAAAAGAA 59.744 43.478 0.00 0.00 0.00 2.52
245 246 2.819608 GCCCAGCACATGAAGTAAAAGA 59.180 45.455 0.00 0.00 0.00 2.52
246 247 2.414559 CGCCCAGCACATGAAGTAAAAG 60.415 50.000 0.00 0.00 0.00 2.27
247 248 1.539388 CGCCCAGCACATGAAGTAAAA 59.461 47.619 0.00 0.00 0.00 1.52
248 249 1.164411 CGCCCAGCACATGAAGTAAA 58.836 50.000 0.00 0.00 0.00 2.01
249 250 2.853159 CGCCCAGCACATGAAGTAA 58.147 52.632 0.00 0.00 0.00 2.24
250 251 4.615901 CGCCCAGCACATGAAGTA 57.384 55.556 0.00 0.00 0.00 2.24
261 262 1.743252 GAGAACAAGGAGCGCCCAG 60.743 63.158 15.92 10.60 37.41 4.45
262 263 2.347490 GAGAACAAGGAGCGCCCA 59.653 61.111 15.92 0.00 37.41 5.36
263 264 2.436824 GGAGAACAAGGAGCGCCC 60.437 66.667 2.29 5.07 33.31 6.13
264 265 1.743252 CTGGAGAACAAGGAGCGCC 60.743 63.158 2.29 0.00 0.00 6.53
265 266 2.394563 GCTGGAGAACAAGGAGCGC 61.395 63.158 0.00 0.00 0.00 5.92
266 267 0.392193 ATGCTGGAGAACAAGGAGCG 60.392 55.000 0.00 0.00 32.05 5.03
267 268 1.831580 AATGCTGGAGAACAAGGAGC 58.168 50.000 0.00 0.00 0.00 4.70
268 269 3.613432 GCAAAATGCTGGAGAACAAGGAG 60.613 47.826 0.00 0.00 40.96 3.69
269 270 2.297033 GCAAAATGCTGGAGAACAAGGA 59.703 45.455 0.00 0.00 40.96 3.36
270 271 2.680577 GCAAAATGCTGGAGAACAAGG 58.319 47.619 0.00 0.00 40.96 3.61
282 283 2.730550 AGTGGTAGCAAGCAAAATGC 57.269 45.000 0.00 0.00 45.46 3.56
283 284 3.319755 CCAAGTGGTAGCAAGCAAAATG 58.680 45.455 0.00 0.00 34.25 2.32
284 285 2.289010 GCCAAGTGGTAGCAAGCAAAAT 60.289 45.455 0.00 0.00 37.57 1.82
285 286 1.068434 GCCAAGTGGTAGCAAGCAAAA 59.932 47.619 0.00 0.00 37.57 2.44
286 287 0.673437 GCCAAGTGGTAGCAAGCAAA 59.327 50.000 0.00 0.00 37.57 3.68
287 288 1.178534 GGCCAAGTGGTAGCAAGCAA 61.179 55.000 0.00 0.00 37.57 3.91
288 289 1.603455 GGCCAAGTGGTAGCAAGCA 60.603 57.895 0.00 0.00 37.57 3.91
289 290 0.035439 TAGGCCAAGTGGTAGCAAGC 60.035 55.000 5.01 0.00 37.57 4.01
290 291 2.717639 ATAGGCCAAGTGGTAGCAAG 57.282 50.000 5.01 0.00 37.57 4.01
291 292 3.112263 AGTATAGGCCAAGTGGTAGCAA 58.888 45.455 5.01 0.00 37.57 3.91
292 293 2.759355 AGTATAGGCCAAGTGGTAGCA 58.241 47.619 5.01 0.00 37.57 3.49
293 294 3.840124 AAGTATAGGCCAAGTGGTAGC 57.160 47.619 5.01 0.00 37.57 3.58
294 295 7.736893 AGAATTAAGTATAGGCCAAGTGGTAG 58.263 38.462 5.01 0.00 37.57 3.18
295 296 7.685849 AGAATTAAGTATAGGCCAAGTGGTA 57.314 36.000 5.01 0.00 37.57 3.25
296 297 6.576778 AGAATTAAGTATAGGCCAAGTGGT 57.423 37.500 5.01 0.00 37.57 4.16
297 298 7.881775 AAAGAATTAAGTATAGGCCAAGTGG 57.118 36.000 5.01 0.00 38.53 4.00
312 313 9.487790 CCTCCTGCACAAAAATAAAAGAATTAA 57.512 29.630 0.00 0.00 0.00 1.40
313 314 8.646900 ACCTCCTGCACAAAAATAAAAGAATTA 58.353 29.630 0.00 0.00 0.00 1.40
314 315 7.508687 ACCTCCTGCACAAAAATAAAAGAATT 58.491 30.769 0.00 0.00 0.00 2.17
315 316 7.066307 ACCTCCTGCACAAAAATAAAAGAAT 57.934 32.000 0.00 0.00 0.00 2.40
316 317 6.478512 ACCTCCTGCACAAAAATAAAAGAA 57.521 33.333 0.00 0.00 0.00 2.52
317 318 7.232534 ACATACCTCCTGCACAAAAATAAAAGA 59.767 33.333 0.00 0.00 0.00 2.52
318 319 7.378181 ACATACCTCCTGCACAAAAATAAAAG 58.622 34.615 0.00 0.00 0.00 2.27
319 320 7.296628 ACATACCTCCTGCACAAAAATAAAA 57.703 32.000 0.00 0.00 0.00 1.52
320 321 6.909550 ACATACCTCCTGCACAAAAATAAA 57.090 33.333 0.00 0.00 0.00 1.40
321 322 7.172342 AGTACATACCTCCTGCACAAAAATAA 58.828 34.615 0.00 0.00 0.00 1.40
322 323 6.717289 AGTACATACCTCCTGCACAAAAATA 58.283 36.000 0.00 0.00 0.00 1.40
323 324 5.570320 AGTACATACCTCCTGCACAAAAAT 58.430 37.500 0.00 0.00 0.00 1.82
324 325 4.980573 AGTACATACCTCCTGCACAAAAA 58.019 39.130 0.00 0.00 0.00 1.94
325 326 4.634012 AGTACATACCTCCTGCACAAAA 57.366 40.909 0.00 0.00 0.00 2.44
326 327 4.634012 AAGTACATACCTCCTGCACAAA 57.366 40.909 0.00 0.00 0.00 2.83
327 328 4.202419 ACAAAGTACATACCTCCTGCACAA 60.202 41.667 0.00 0.00 0.00 3.33
328 329 3.326588 ACAAAGTACATACCTCCTGCACA 59.673 43.478 0.00 0.00 0.00 4.57
329 330 3.939066 ACAAAGTACATACCTCCTGCAC 58.061 45.455 0.00 0.00 0.00 4.57
330 331 4.286032 AGAACAAAGTACATACCTCCTGCA 59.714 41.667 0.00 0.00 0.00 4.41
331 332 4.833390 AGAACAAAGTACATACCTCCTGC 58.167 43.478 0.00 0.00 0.00 4.85
332 333 7.162082 AGAAAGAACAAAGTACATACCTCCTG 58.838 38.462 0.00 0.00 0.00 3.86
333 334 7.317722 AGAAAGAACAAAGTACATACCTCCT 57.682 36.000 0.00 0.00 0.00 3.69
334 335 8.312564 AGTAGAAAGAACAAAGTACATACCTCC 58.687 37.037 0.00 0.00 0.00 4.30
390 391 9.970553 ACATGCATGTCCATTCTATTATTAGAT 57.029 29.630 26.61 0.00 35.87 1.98
395 396 9.743581 TCATTACATGCATGTCCATTCTATTAT 57.256 29.630 34.54 9.12 41.97 1.28
396 397 9.223099 CTCATTACATGCATGTCCATTCTATTA 57.777 33.333 34.54 11.46 41.97 0.98
397 398 7.722728 ACTCATTACATGCATGTCCATTCTATT 59.277 33.333 34.54 9.86 41.97 1.73
398 399 7.229308 ACTCATTACATGCATGTCCATTCTAT 58.771 34.615 34.54 14.62 41.97 1.98
399 400 6.594744 ACTCATTACATGCATGTCCATTCTA 58.405 36.000 34.54 13.77 41.97 2.10
400 401 5.443283 ACTCATTACATGCATGTCCATTCT 58.557 37.500 34.54 12.12 41.97 2.40
401 402 5.762825 ACTCATTACATGCATGTCCATTC 57.237 39.130 34.54 0.00 41.97 2.67
402 403 5.653330 TGAACTCATTACATGCATGTCCATT 59.347 36.000 34.54 20.17 41.97 3.16
403 404 5.066893 GTGAACTCATTACATGCATGTCCAT 59.933 40.000 34.54 23.86 41.97 3.41
404 405 4.395854 GTGAACTCATTACATGCATGTCCA 59.604 41.667 34.54 22.73 41.97 4.02
405 406 4.395854 TGTGAACTCATTACATGCATGTCC 59.604 41.667 34.54 14.70 41.97 4.02
406 407 5.106594 TGTGTGAACTCATTACATGCATGTC 60.107 40.000 34.54 18.25 41.97 3.06
407 408 4.761227 TGTGTGAACTCATTACATGCATGT 59.239 37.500 33.20 33.20 44.48 3.21
408 409 5.090757 GTGTGTGAACTCATTACATGCATG 58.909 41.667 25.09 25.09 31.75 4.06
409 410 4.761227 TGTGTGTGAACTCATTACATGCAT 59.239 37.500 0.00 0.00 31.75 3.96
410 411 4.133078 TGTGTGTGAACTCATTACATGCA 58.867 39.130 0.00 0.00 31.75 3.96
411 412 4.747540 TGTGTGTGAACTCATTACATGC 57.252 40.909 0.00 0.00 31.75 4.06
412 413 7.416817 TCTTTTGTGTGTGAACTCATTACATG 58.583 34.615 0.00 0.00 31.75 3.21
413 414 7.566760 TCTTTTGTGTGTGAACTCATTACAT 57.433 32.000 3.94 0.00 31.75 2.29
414 415 6.993786 TCTTTTGTGTGTGAACTCATTACA 57.006 33.333 0.00 0.00 0.00 2.41
415 416 8.682128 TTTTCTTTTGTGTGTGAACTCATTAC 57.318 30.769 0.00 0.00 0.00 1.89
438 439 6.625532 ATCCCATGGCTTTCATTACTTTTT 57.374 33.333 6.09 0.00 32.92 1.94
439 440 5.163519 CGATCCCATGGCTTTCATTACTTTT 60.164 40.000 6.09 0.00 32.92 2.27
440 441 4.339247 CGATCCCATGGCTTTCATTACTTT 59.661 41.667 6.09 0.00 32.92 2.66
441 442 3.885297 CGATCCCATGGCTTTCATTACTT 59.115 43.478 6.09 0.00 32.92 2.24
442 443 3.480470 CGATCCCATGGCTTTCATTACT 58.520 45.455 6.09 0.00 32.92 2.24
443 444 2.554032 CCGATCCCATGGCTTTCATTAC 59.446 50.000 6.09 0.00 32.92 1.89
444 445 2.441375 TCCGATCCCATGGCTTTCATTA 59.559 45.455 6.09 0.00 32.92 1.90
445 446 1.215173 TCCGATCCCATGGCTTTCATT 59.785 47.619 6.09 0.00 32.92 2.57
446 447 0.846015 TCCGATCCCATGGCTTTCAT 59.154 50.000 6.09 0.00 36.31 2.57
447 448 0.181114 CTCCGATCCCATGGCTTTCA 59.819 55.000 6.09 0.00 0.00 2.69
448 449 0.181350 ACTCCGATCCCATGGCTTTC 59.819 55.000 6.09 1.34 0.00 2.62
500 504 0.250124 TGCAGGAACGTTACCACTGG 60.250 55.000 6.97 0.00 0.00 4.00
501 505 1.148310 CTGCAGGAACGTTACCACTG 58.852 55.000 6.97 11.50 0.00 3.66
503 507 1.429463 CTCTGCAGGAACGTTACCAC 58.571 55.000 15.13 0.00 0.00 4.16
505 509 0.606604 TCCTCTGCAGGAACGTTACC 59.393 55.000 15.13 7.75 46.84 2.85
529 533 5.382303 CGGTTAATTAACAACAGACAGCAG 58.618 41.667 25.59 0.00 37.92 4.24
532 536 5.351233 TGCGGTTAATTAACAACAGACAG 57.649 39.130 25.59 9.93 37.92 3.51
541 545 4.561213 GCAACTCCAATGCGGTTAATTAAC 59.439 41.667 18.30 18.30 33.57 2.01
547 551 0.963355 GGGCAACTCCAATGCGGTTA 60.963 55.000 0.00 0.00 44.75 2.85
580 584 0.979187 GACGGTGGTGGGGGATAAGA 60.979 60.000 0.00 0.00 0.00 2.10
644 648 0.911525 AGGAGTCCACCATGGGTCTG 60.912 60.000 18.09 5.17 38.32 3.51
664 668 2.622942 GACAAGAAATTGGTGTGGCTGA 59.377 45.455 0.00 0.00 0.00 4.26
694 698 3.935203 CGAGGTTCTGCATGAGTTTATGT 59.065 43.478 0.00 0.00 0.00 2.29
695 699 3.242543 GCGAGGTTCTGCATGAGTTTATG 60.243 47.826 0.00 0.00 0.00 1.90
696 700 2.939103 GCGAGGTTCTGCATGAGTTTAT 59.061 45.455 0.00 0.00 0.00 1.40
697 701 2.346803 GCGAGGTTCTGCATGAGTTTA 58.653 47.619 0.00 0.00 0.00 2.01
707 711 0.603707 TGCTTTGAGGCGAGGTTCTG 60.604 55.000 0.00 0.00 34.52 3.02
765 769 2.417243 GCTTTCAAGTGTGTGCTTGGTT 60.417 45.455 6.06 0.00 44.26 3.67
769 773 3.924238 CGCTTTCAAGTGTGTGCTT 57.076 47.368 0.00 0.00 0.00 3.91
874 878 2.504367 CGGATGAGAAGTTGGTTTGGT 58.496 47.619 0.00 0.00 0.00 3.67
905 909 0.322546 GCGAGGTTCTCCATGGGTTT 60.323 55.000 13.02 0.00 35.89 3.27
908 912 2.190578 GGCGAGGTTCTCCATGGG 59.809 66.667 13.02 2.57 35.89 4.00
909 913 1.144936 GAGGCGAGGTTCTCCATGG 59.855 63.158 4.97 4.97 35.89 3.66
987 1000 2.170260 ATCGTTTTGGTGCGTGCTCG 62.170 55.000 3.31 3.31 40.37 5.03
988 1001 0.452784 GATCGTTTTGGTGCGTGCTC 60.453 55.000 0.00 0.00 0.00 4.26
989 1002 1.574428 GATCGTTTTGGTGCGTGCT 59.426 52.632 0.00 0.00 0.00 4.40
990 1003 1.442017 GGATCGTTTTGGTGCGTGC 60.442 57.895 0.00 0.00 0.00 5.34
991 1004 1.209127 GGGATCGTTTTGGTGCGTG 59.791 57.895 0.00 0.00 0.00 5.34
992 1005 2.322081 CGGGATCGTTTTGGTGCGT 61.322 57.895 0.00 0.00 0.00 5.24
993 1006 2.478746 CGGGATCGTTTTGGTGCG 59.521 61.111 0.00 0.00 0.00 5.34
994 1007 1.520600 AACCGGGATCGTTTTGGTGC 61.521 55.000 6.32 0.00 32.14 5.01
995 1008 0.519961 GAACCGGGATCGTTTTGGTG 59.480 55.000 6.32 0.00 32.14 4.17
999 1012 0.604511 AAGCGAACCGGGATCGTTTT 60.605 50.000 24.64 17.21 40.11 2.43
1020 1033 2.783288 GGGCGGCGAGTTAGCTACT 61.783 63.158 12.98 0.00 40.71 2.57
1021 1034 2.279318 GGGCGGCGAGTTAGCTAC 60.279 66.667 12.98 0.00 37.29 3.58
1039 1059 2.267961 GAGAAACATCCCGGCGGT 59.732 61.111 26.32 4.29 0.00 5.68
1119 1139 0.458025 CGTTGTCGAGGCCTAGGAAC 60.458 60.000 14.75 11.62 39.71 3.62
1259 1280 2.821378 CCAATCTCTGCACAACCAATCA 59.179 45.455 0.00 0.00 0.00 2.57
1268 1289 2.789917 CTGCGCCAATCTCTGCAC 59.210 61.111 4.18 0.00 33.12 4.57
1490 1547 6.111382 TGAAGCTCTGTTCAGATTAAGATGG 58.889 40.000 2.89 0.00 32.54 3.51
1500 1557 4.580855 CTTCGATTGAAGCTCTGTTCAG 57.419 45.455 9.80 0.00 44.70 3.02
1660 1731 2.913578 ACCAGGTACACGACGGCA 60.914 61.111 0.00 0.00 0.00 5.69
1696 1767 0.938168 GCTTCGTCTCGTTGAACCGT 60.938 55.000 0.00 0.00 0.00 4.83
1981 2399 2.260639 AGAGATGCCTTTCCCTCTGA 57.739 50.000 0.00 0.00 34.96 3.27
1988 2406 5.240403 ACAAGAAGAAACAGAGATGCCTTTC 59.760 40.000 0.00 0.00 0.00 2.62
1991 2409 4.070716 CACAAGAAGAAACAGAGATGCCT 58.929 43.478 0.00 0.00 0.00 4.75
2097 2657 7.271511 AGGCTTCAAGAATATAACAGACTGAG 58.728 38.462 10.08 0.00 0.00 3.35
2134 2694 3.883489 ACCAAAGCAGGAGTCAAAAGTAC 59.117 43.478 0.00 0.00 0.00 2.73
2165 2725 3.243336 GCGGAAATATATCGAAGCTCGT 58.757 45.455 0.00 0.00 41.35 4.18
2166 2726 3.242518 TGCGGAAATATATCGAAGCTCG 58.757 45.455 0.00 0.00 42.10 5.03
2183 2743 4.916983 TGGGAATTTTCAGAATATGCGG 57.083 40.909 0.00 0.00 0.00 5.69
2230 2791 4.088762 GACCACCACATGTGCGCG 62.089 66.667 20.81 9.59 44.01 6.86
2270 2832 6.324512 TGGCTGAGTATAGGGTTAAAACGATA 59.675 38.462 0.00 0.00 0.00 2.92
2308 2870 7.337436 TGGGTTTATTTTCACCGGTCTAATAAG 59.663 37.037 2.59 0.00 33.34 1.73
2311 2873 5.572252 TGGGTTTATTTTCACCGGTCTAAT 58.428 37.500 2.59 7.36 33.34 1.73
2378 3654 1.212195 GCCCGGGTAATCCTCTTTTCT 59.788 52.381 24.63 0.00 0.00 2.52
2379 3655 1.676746 GCCCGGGTAATCCTCTTTTC 58.323 55.000 24.63 0.00 0.00 2.29
2382 3658 1.004361 AGGCCCGGGTAATCCTCTT 59.996 57.895 24.63 0.00 0.00 2.85
2407 3684 9.701098 ATAAAGATGGCTACATGCATTATTTTG 57.299 29.630 0.00 0.00 45.15 2.44
2413 3690 8.469309 ACTTAATAAAGATGGCTACATGCATT 57.531 30.769 0.00 0.00 38.75 3.56
2483 3763 1.000506 GCGGTCAAGACACTAAGGTGA 59.999 52.381 2.29 0.00 45.61 4.02
2508 3816 3.369471 CCACTGAATTAGATGGTGTCCGT 60.369 47.826 0.00 0.00 0.00 4.69
2509 3817 3.198068 CCACTGAATTAGATGGTGTCCG 58.802 50.000 0.00 0.00 0.00 4.79
2511 3819 2.945668 GGCCACTGAATTAGATGGTGTC 59.054 50.000 0.00 0.00 33.06 3.67
2524 3832 1.376466 GGCTTCTTGAGGCCACTGA 59.624 57.895 17.21 0.00 46.84 3.41
2525 3833 3.993535 GGCTTCTTGAGGCCACTG 58.006 61.111 17.21 0.00 46.84 3.66
2533 3841 1.371183 CAGACGGGTGGCTTCTTGA 59.629 57.895 0.00 0.00 0.00 3.02
2548 3856 4.040461 AGTTAGTACTTTCAGCTTGCCAGA 59.960 41.667 0.00 0.00 0.00 3.86
2561 3869 5.104569 AGGACGCCTAGACTAGTTAGTACTT 60.105 44.000 0.00 0.00 31.31 2.24
2562 3870 4.408596 AGGACGCCTAGACTAGTTAGTACT 59.591 45.833 8.68 0.00 31.31 2.73
2563 3871 4.702831 AGGACGCCTAGACTAGTTAGTAC 58.297 47.826 8.68 6.15 31.31 2.73
2564 3872 5.363868 TGTAGGACGCCTAGACTAGTTAGTA 59.636 44.000 8.68 0.00 36.71 1.82
2565 3873 3.929955 AGGACGCCTAGACTAGTTAGT 57.070 47.619 8.68 5.31 33.11 2.24
2566 3874 4.701765 TGTAGGACGCCTAGACTAGTTAG 58.298 47.826 8.68 1.25 36.71 2.34
2567 3875 4.760530 TGTAGGACGCCTAGACTAGTTA 57.239 45.455 8.68 0.00 36.71 2.24
2568 3876 3.641434 TGTAGGACGCCTAGACTAGTT 57.359 47.619 8.68 0.00 36.71 2.24
2570 3878 2.287373 CGTTGTAGGACGCCTAGACTAG 59.713 54.545 2.18 2.18 36.71 2.57
2571 3879 2.283298 CGTTGTAGGACGCCTAGACTA 58.717 52.381 5.94 0.00 36.71 2.59
2572 3880 1.093159 CGTTGTAGGACGCCTAGACT 58.907 55.000 5.94 0.00 36.71 3.24
2573 3881 3.618774 CGTTGTAGGACGCCTAGAC 57.381 57.895 5.94 7.30 36.71 2.59
2580 3888 2.369629 CGGTGTGCGTTGTAGGACG 61.370 63.158 0.00 0.00 45.40 4.79
2602 3911 0.457851 GCTGATCCTAGAGTGTGCGT 59.542 55.000 0.00 0.00 0.00 5.24
2623 3932 0.953727 TTATGCAATGATCCAGCGGC 59.046 50.000 0.00 0.00 0.00 6.53
2624 3933 2.224606 ACTTATGCAATGATCCAGCGG 58.775 47.619 0.00 0.00 0.00 5.52
2626 3935 5.335426 CCACATACTTATGCAATGATCCAGC 60.335 44.000 2.39 0.00 37.19 4.85
2627 3936 5.766670 ACCACATACTTATGCAATGATCCAG 59.233 40.000 2.39 0.00 37.19 3.86
2628 3937 5.693961 ACCACATACTTATGCAATGATCCA 58.306 37.500 2.39 0.00 37.19 3.41
2631 3940 7.056006 TGAAGACCACATACTTATGCAATGAT 58.944 34.615 2.39 0.00 37.19 2.45
2632 3941 6.413892 TGAAGACCACATACTTATGCAATGA 58.586 36.000 2.39 0.00 37.19 2.57
2633 3942 6.682423 TGAAGACCACATACTTATGCAATG 57.318 37.500 0.00 0.00 37.19 2.82
2634 3943 7.701539 TTTGAAGACCACATACTTATGCAAT 57.298 32.000 0.00 0.00 37.19 3.56
2647 3978 6.073276 GGCCAAAATAACATTTTGAAGACCAC 60.073 38.462 20.53 5.90 40.73 4.16
2675 4006 9.037737 GCCAGTTATACACGTATCTTGAAATTA 57.962 33.333 0.00 0.00 0.00 1.40
2676 4007 7.551262 TGCCAGTTATACACGTATCTTGAAATT 59.449 33.333 0.00 0.00 0.00 1.82
2677 4008 7.045416 TGCCAGTTATACACGTATCTTGAAAT 58.955 34.615 0.00 0.00 0.00 2.17
2678 4009 6.399743 TGCCAGTTATACACGTATCTTGAAA 58.600 36.000 0.00 0.00 0.00 2.69
2679 4010 5.968254 TGCCAGTTATACACGTATCTTGAA 58.032 37.500 0.00 0.00 0.00 2.69
2680 4011 5.585820 TGCCAGTTATACACGTATCTTGA 57.414 39.130 0.00 0.00 0.00 3.02
2681 4012 5.810587 ACTTGCCAGTTATACACGTATCTTG 59.189 40.000 0.00 0.00 0.00 3.02
2682 4013 5.810587 CACTTGCCAGTTATACACGTATCTT 59.189 40.000 0.00 0.00 0.00 2.40
2683 4014 5.126545 TCACTTGCCAGTTATACACGTATCT 59.873 40.000 0.00 0.00 0.00 1.98
2684 4015 5.345702 TCACTTGCCAGTTATACACGTATC 58.654 41.667 0.00 0.00 0.00 2.24
2685 4016 5.333299 TCACTTGCCAGTTATACACGTAT 57.667 39.130 0.00 0.00 0.00 3.06
2686 4017 4.787260 TCACTTGCCAGTTATACACGTA 57.213 40.909 0.00 0.00 0.00 3.57
2687 4018 3.671008 TCACTTGCCAGTTATACACGT 57.329 42.857 0.00 0.00 0.00 4.49
2688 4019 3.124636 GGTTCACTTGCCAGTTATACACG 59.875 47.826 0.00 0.00 0.00 4.49
2689 4020 3.124636 CGGTTCACTTGCCAGTTATACAC 59.875 47.826 0.00 0.00 0.00 2.90
2690 4021 3.331150 CGGTTCACTTGCCAGTTATACA 58.669 45.455 0.00 0.00 0.00 2.29
2691 4022 2.095372 GCGGTTCACTTGCCAGTTATAC 59.905 50.000 0.00 0.00 0.00 1.47
2692 4023 2.289756 TGCGGTTCACTTGCCAGTTATA 60.290 45.455 0.00 0.00 0.00 0.98
2693 4024 1.165270 GCGGTTCACTTGCCAGTTAT 58.835 50.000 0.00 0.00 0.00 1.89
2694 4025 0.179043 TGCGGTTCACTTGCCAGTTA 60.179 50.000 0.00 0.00 0.00 2.24
2695 4026 0.823356 ATGCGGTTCACTTGCCAGTT 60.823 50.000 0.00 0.00 0.00 3.16
2696 4027 1.228245 ATGCGGTTCACTTGCCAGT 60.228 52.632 0.00 0.00 0.00 4.00
2697 4028 1.210931 CATGCGGTTCACTTGCCAG 59.789 57.895 0.00 0.00 0.00 4.85
2698 4029 1.106351 AACATGCGGTTCACTTGCCA 61.106 50.000 0.00 0.00 33.35 4.92
2699 4030 0.031994 AAACATGCGGTTCACTTGCC 59.968 50.000 0.00 0.00 39.29 4.52
2700 4031 1.130955 CAAACATGCGGTTCACTTGC 58.869 50.000 0.00 0.00 39.29 4.01
2701 4032 2.118683 CACAAACATGCGGTTCACTTG 58.881 47.619 0.00 0.00 39.29 3.16
2702 4033 1.535860 GCACAAACATGCGGTTCACTT 60.536 47.619 0.00 0.00 39.29 3.16
2703 4034 0.030638 GCACAAACATGCGGTTCACT 59.969 50.000 0.00 0.00 39.29 3.41
2704 4035 2.505447 GCACAAACATGCGGTTCAC 58.495 52.632 0.00 0.00 39.29 3.18
2711 4042 2.282701 ATCAATCCGCACAAACATGC 57.717 45.000 0.00 0.00 42.48 4.06
2712 4043 4.236147 TCAAATCAATCCGCACAAACATG 58.764 39.130 0.00 0.00 0.00 3.21
2713 4044 4.517952 TCAAATCAATCCGCACAAACAT 57.482 36.364 0.00 0.00 0.00 2.71
2714 4045 3.998099 TCAAATCAATCCGCACAAACA 57.002 38.095 0.00 0.00 0.00 2.83
2715 4046 5.398169 TGTATCAAATCAATCCGCACAAAC 58.602 37.500 0.00 0.00 0.00 2.93
2716 4047 5.635417 TGTATCAAATCAATCCGCACAAA 57.365 34.783 0.00 0.00 0.00 2.83
2717 4048 5.125257 ACATGTATCAAATCAATCCGCACAA 59.875 36.000 0.00 0.00 0.00 3.33
2718 4049 4.639755 ACATGTATCAAATCAATCCGCACA 59.360 37.500 0.00 0.00 0.00 4.57
2719 4050 5.173774 ACATGTATCAAATCAATCCGCAC 57.826 39.130 0.00 0.00 0.00 5.34
2720 4051 5.125257 ACAACATGTATCAAATCAATCCGCA 59.875 36.000 0.00 0.00 0.00 5.69
2721 4052 5.581605 ACAACATGTATCAAATCAATCCGC 58.418 37.500 0.00 0.00 0.00 5.54
2748 4079 8.853077 ATATGTCAAATGATGGTCGATTGTAT 57.147 30.769 0.00 0.00 0.00 2.29
2838 4228 6.494491 AGACCATGATTTCAAACAAAGATCCA 59.506 34.615 0.00 0.00 0.00 3.41
2871 4261 4.351874 AAAGTGGGAAAGTCGAAGATCA 57.648 40.909 0.00 0.00 40.67 2.92
2879 5676 4.668431 GCGAACGATAAAAGTGGGAAAGTC 60.668 45.833 0.00 0.00 0.00 3.01
2880 5677 3.187842 GCGAACGATAAAAGTGGGAAAGT 59.812 43.478 0.00 0.00 0.00 2.66
2910 5707 7.173907 AGAGATGTCAATAGAAAAACACCACTG 59.826 37.037 0.00 0.00 0.00 3.66
2930 5727 4.926238 GCGGTGTGGAAATATCTAGAGATG 59.074 45.833 0.00 0.00 36.05 2.90
2989 5786 2.361789 GCATTGCCTTGCATCCATTTT 58.638 42.857 0.00 0.00 42.31 1.82
3012 5809 8.629158 GGCAATTGAAGGTAATATGTATCAACA 58.371 33.333 10.34 0.00 40.69 3.33
3031 5828 8.218338 AGTAAGAGAGAATGTTATGGCAATTG 57.782 34.615 0.00 0.00 0.00 2.32
3075 5872 6.990349 AGAACAAAGACACGGATAGAAAGAAA 59.010 34.615 0.00 0.00 0.00 2.52
3086 5883 4.728534 TCAACAAAAGAACAAAGACACGG 58.271 39.130 0.00 0.00 0.00 4.94
3087 5884 6.027131 TCATCAACAAAAGAACAAAGACACG 58.973 36.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.